@aws-sdk/client-omics 3.329.0 → 3.332.0

package/dist-cjs/models/models_0.js

@@ -1,6 +1,6 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.GetReferenceResponseFilterSensitiveLog = exports.GetReadSetResponseFilterSensitiveLog = exports.WorkflowExport = exports.TaskStatus = exports.WorkflowType = exports.RunStatus = exports.RunLogLevel = exports.RunExport = exports.ReferenceStatus = exports.ReferenceImportJobStatus = exports.ReferenceImportJobItemStatus = exports.ReferenceFile = exports.ReadSetStatus = exports.ReadSetImportJobStatus = exports.ReadSetImportJobItemStatus = exports.RangeNotSatisfiableException = exports.ReadSetFile = exports.FileType = exports.ReadSetExportJobStatus = exports.ReadSetExportJobItemStatus = exports.WorkflowStatus = exports.WorkflowEngine = exports.RequestTimeoutException = exports.StoreStatus = exports.StoreOptions = exports.SchemaValueType = exports.FormatToHeaderKey = exports.AnnotationType = exports.StoreFormat = exports.EncryptionType = exports.ReferenceItem = exports.ConflictException = exports.ServiceQuotaExceededException = exports.FormatOptions = exports.ValidationException = exports.ThrottlingException = exports.ResourceNotFoundException = exports.InternalServerException = exports.JobStatus = exports.ReadSetActivationJobItemStatus = exports.ReadSetActivationJobStatus = exports.AccessDeniedException = void 0;
+exports.UploadReadSetPartRequestFilterSensitiveLog = exports.GetReferenceResponseFilterSensitiveLog = exports.GetReadSetResponseFilterSensitiveLog = exports.WorkflowExport = exports.TaskStatus = exports.WorkflowType = exports.RunStatus = exports.RunLogLevel = exports.RunExport = exports.ReferenceStatus = exports.ReferenceImportJobStatus = exports.ReferenceImportJobItemStatus = exports.ReferenceFile = exports.ReadSetStatus = exports.ReadSetImportJobStatus = exports.ReadSetImportJobItemStatus = exports.RangeNotSatisfiableException = exports.ReadSetFile = exports.ReadSetExportJobStatus = exports.ReadSetExportJobItemStatus = exports.WorkflowStatus = exports.WorkflowEngine = exports.FileType = exports.ReadSetPartSource = exports.StoreStatus = exports.StoreOptions = exports.SchemaValueType = exports.FormatToHeaderKey = exports.AnnotationType = exports.StoreFormat = exports.EncryptionType = exports.ReferenceItem = exports.ConflictException = exports.FormatOptions = exports.JobStatus = exports.ReadSetActivationJobItemStatus = exports.ReadSetActivationJobStatus = exports.Accelerators = exports.ValidationException = exports.ThrottlingException = exports.ServiceQuotaExceededException = exports.ResourceNotFoundException = exports.RequestTimeoutException = exports.NotSupportedOperationException = exports.InternalServerException = exports.AccessDeniedException = void 0;
 const OmicsServiceException_1 = require("./OmicsServiceException");
 class AccessDeniedException extends OmicsServiceException_1.OmicsServiceException {
     constructor(opts) {
@@ -15,29 +15,6 @@ class AccessDeniedException extends OmicsServiceException_1.OmicsServiceExceptio
     }
 }
 exports.AccessDeniedException = AccessDeniedException;
-exports.ReadSetActivationJobStatus = {
-    CANCELLED: "CANCELLED",
-    CANCELLING: "CANCELLING",
-    COMPLETED: "COMPLETED",
-    COMPLETED_WITH_FAILURES: "COMPLETED_WITH_FAILURES",
-    FAILED: "FAILED",
-    IN_PROGRESS: "IN_PROGRESS",
-    SUBMITTED: "SUBMITTED",
-};
-exports.ReadSetActivationJobItemStatus = {
-    FAILED: "FAILED",
-    FINISHED: "FINISHED",
-    IN_PROGRESS: "IN_PROGRESS",
-    NOT_STARTED: "NOT_STARTED",
-};
-exports.JobStatus = {
-    CANCELLED: "CANCELLED",
-    COMPLETED: "COMPLETED",
-    COMPLETED_WITH_FAILURES: "COMPLETED_WITH_FAILURES",
-    FAILED: "FAILED",
-    IN_PROGRESS: "IN_PROGRESS",
-    SUBMITTED: "SUBMITTED",
-};
 class InternalServerException extends OmicsServiceException_1.OmicsServiceException {
     constructor(opts) {
         super({
@@ -52,6 +29,32 @@ class InternalServerException extends OmicsServiceException_1.OmicsServiceExcept
     }
 }
 exports.InternalServerException = InternalServerException;
+class NotSupportedOperationException extends OmicsServiceException_1.OmicsServiceException {
+    constructor(opts) {
+        super({
+            name: "NotSupportedOperationException",
+            $fault: "client",
+            ...opts,
+        });
+        this.name = "NotSupportedOperationException";
+        this.$fault = "client";
+        Object.setPrototypeOf(this, NotSupportedOperationException.prototype);
+    }
+}
+exports.NotSupportedOperationException = NotSupportedOperationException;
+class RequestTimeoutException extends OmicsServiceException_1.OmicsServiceException {
+    constructor(opts) {
+        super({
+            name: "RequestTimeoutException",
+            $fault: "client",
+            ...opts,
+        });
+        this.name = "RequestTimeoutException";
+        this.$fault = "client";
+        Object.setPrototypeOf(this, RequestTimeoutException.prototype);
+    }
+}
+exports.RequestTimeoutException = RequestTimeoutException;
 class ResourceNotFoundException extends OmicsServiceException_1.OmicsServiceException {
     constructor(opts) {
         super({
@@ -65,6 +68,19 @@ class ResourceNotFoundException extends OmicsServiceException_1.OmicsServiceExce
     }
 }
 exports.ResourceNotFoundException = ResourceNotFoundException;
+class ServiceQuotaExceededException extends OmicsServiceException_1.OmicsServiceException {
+    constructor(opts) {
+        super({
+            name: "ServiceQuotaExceededException",
+            $fault: "client",
+            ...opts,
+        });
+        this.name = "ServiceQuotaExceededException";
+        this.$fault = "client";
+        Object.setPrototypeOf(this, ServiceQuotaExceededException.prototype);
+    }
+}
+exports.ServiceQuotaExceededException = ServiceQuotaExceededException;
 class ThrottlingException extends OmicsServiceException_1.OmicsServiceException {
     constructor(opts) {
         super({
@@ -94,6 +110,32 @@ class ValidationException extends OmicsServiceException_1.OmicsServiceException
     }
 }
 exports.ValidationException = ValidationException;
+exports.Accelerators = {
+    GPU: "GPU",
+};
+exports.ReadSetActivationJobStatus = {
+    CANCELLED: "CANCELLED",
+    CANCELLING: "CANCELLING",
+    COMPLETED: "COMPLETED",
+    COMPLETED_WITH_FAILURES: "COMPLETED_WITH_FAILURES",
+    FAILED: "FAILED",
+    IN_PROGRESS: "IN_PROGRESS",
+    SUBMITTED: "SUBMITTED",
+};
+exports.ReadSetActivationJobItemStatus = {
+    FAILED: "FAILED",
+    FINISHED: "FINISHED",
+    IN_PROGRESS: "IN_PROGRESS",
+    NOT_STARTED: "NOT_STARTED",
+};
+exports.JobStatus = {
+    CANCELLED: "CANCELLED",
+    COMPLETED: "COMPLETED",
+    COMPLETED_WITH_FAILURES: "COMPLETED_WITH_FAILURES",
+    FAILED: "FAILED",
+    IN_PROGRESS: "IN_PROGRESS",
+    SUBMITTED: "SUBMITTED",
+};
 var FormatOptions;
 (function (FormatOptions) {
     FormatOptions.visit = (value, visitor) => {
@@ -104,19 +146,6 @@ var FormatOptions;
         return visitor._(value.$unknown[0], value.$unknown[1]);
     };
 })(FormatOptions = exports.FormatOptions || (exports.FormatOptions = {}));
-class ServiceQuotaExceededException extends OmicsServiceException_1.OmicsServiceException {
-    constructor(opts) {
-        super({
-            name: "ServiceQuotaExceededException",
-            $fault: "client",
-            ...opts,
-        });
-        this.name = "ServiceQuotaExceededException";
-        this.$fault = "client";
-        Object.setPrototypeOf(this, ServiceQuotaExceededException.prototype);
-    }
-}
-exports.ServiceQuotaExceededException = ServiceQuotaExceededException;
 class ConflictException extends OmicsServiceException_1.OmicsServiceException {
     constructor(opts) {
         super({
@@ -186,19 +215,15 @@ exports.StoreStatus = {
     FAILED: "FAILED",
     UPDATING: "UPDATING",
 };
-class RequestTimeoutException extends OmicsServiceException_1.OmicsServiceException {
-    constructor(opts) {
-        super({
-            name: "RequestTimeoutException",
-            $fault: "client",
-            ...opts,
-        });
-        this.name = "RequestTimeoutException";
-        this.$fault = "client";
-        Object.setPrototypeOf(this, RequestTimeoutException.prototype);
-    }
-}
-exports.RequestTimeoutException = RequestTimeoutException;
+exports.ReadSetPartSource = {
+    SOURCE1: "SOURCE1",
+    SOURCE2: "SOURCE2",
+};
+exports.FileType = {
+    BAM: "BAM",
+    CRAM: "CRAM",
+    FASTQ: "FASTQ",
+};
 exports.WorkflowEngine = {
     NEXTFLOW: "NEXTFLOW",
     WDL: "WDL",
@@ -208,6 +233,7 @@ exports.WorkflowStatus = {
     CREATING: "CREATING",
     DELETED: "DELETED",
     FAILED: "FAILED",
+    INACTIVE: "INACTIVE",
     UPDATING: "UPDATING",
 };
 exports.ReadSetExportJobItemStatus = {
@@ -225,11 +251,6 @@ exports.ReadSetExportJobStatus = {
     IN_PROGRESS: "IN_PROGRESS",
     SUBMITTED: "SUBMITTED",
 };
-exports.FileType = {
-    BAM: "BAM",
-    CRAM: "CRAM",
-    FASTQ: "FASTQ",
-};
 exports.ReadSetFile = {
     INDEX: "INDEX",
     SOURCE1: "SOURCE1",
@@ -270,6 +291,8 @@ exports.ReadSetStatus = {
     ARCHIVED: "ARCHIVED",
     DELETED: "DELETED",
     DELETING: "DELETING",
+    PROCESSING_UPLOAD: "PROCESSING_UPLOAD",
+    UPLOAD_FAILED: "UPLOAD_FAILED",
 };
 exports.ReferenceFile = {
     INDEX: "INDEX",
@@ -316,6 +339,7 @@ exports.RunStatus = {
 };
 exports.WorkflowType = {
     PRIVATE: "PRIVATE",
+    READY2RUN: "READY2RUN",
 };
 exports.TaskStatus = {
     CANCELLED: "CANCELLED",
@@ -337,3 +361,7 @@ const GetReferenceResponseFilterSensitiveLog = (obj) => ({
     ...obj,
 });
 exports.GetReferenceResponseFilterSensitiveLog = GetReferenceResponseFilterSensitiveLog;
+const UploadReadSetPartRequestFilterSensitiveLog = (obj) => ({
+    ...obj,
+});
+exports.UploadReadSetPartRequestFilterSensitiveLog = UploadReadSetPartRequestFilterSensitiveLog;

package/dist-cjs/pagination/ListMultipartReadSetUploadsPaginator.js

@@ -0,0 +1,29 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.paginateListMultipartReadSetUploads = void 0;
+const ListMultipartReadSetUploadsCommand_1 = require("../commands/ListMultipartReadSetUploadsCommand");
+const OmicsClient_1 = require("../OmicsClient");
+const makePagedClientRequest = async (client, input, ...args) => {
+    return await client.send(new ListMultipartReadSetUploadsCommand_1.ListMultipartReadSetUploadsCommand(input), ...args);
+};
+async function* paginateListMultipartReadSetUploads(config, input, ...additionalArguments) {
+    let token = config.startingToken || undefined;
+    let hasNext = true;
+    let page;
+    while (hasNext) {
+        input.nextToken = token;
+        input["maxResults"] = config.pageSize;
+        if (config.client instanceof OmicsClient_1.OmicsClient) {
+            page = await makePagedClientRequest(config.client, input, ...additionalArguments);
+        }
+        else {
+            throw new Error("Invalid client, expected Omics | OmicsClient");
+        }
+        yield page;
+        const prevToken = token;
+        token = page.nextToken;
+        hasNext = !!(token && (!config.stopOnSameToken || token !== prevToken));
+    }
+    return undefined;
+}
+exports.paginateListMultipartReadSetUploads = paginateListMultipartReadSetUploads;

package/dist-cjs/pagination/ListReadSetUploadPartsPaginator.js

@@ -0,0 +1,29 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.paginateListReadSetUploadParts = void 0;
+const ListReadSetUploadPartsCommand_1 = require("../commands/ListReadSetUploadPartsCommand");
+const OmicsClient_1 = require("../OmicsClient");
+const makePagedClientRequest = async (client, input, ...args) => {
+    return await client.send(new ListReadSetUploadPartsCommand_1.ListReadSetUploadPartsCommand(input), ...args);
+};
+async function* paginateListReadSetUploadParts(config, input, ...additionalArguments) {
+    let token = config.startingToken || undefined;
+    let hasNext = true;
+    let page;
+    while (hasNext) {
+        input.nextToken = token;
+        input["maxResults"] = config.pageSize;
+        if (config.client instanceof OmicsClient_1.OmicsClient) {
+            page = await makePagedClientRequest(config.client, input, ...additionalArguments);
+        }
+        else {
+            throw new Error("Invalid client, expected Omics | OmicsClient");
+        }
+        yield page;
+        const prevToken = token;
+        token = page.nextToken;
+        hasNext = !!(token && (!config.stopOnSameToken || token !== prevToken));
+    }
+    return undefined;
+}
+exports.paginateListReadSetUploadParts = paginateListReadSetUploadParts;

package/dist-cjs/pagination/index.js

@@ -4,9 +4,11 @@ const tslib_1 = require("tslib");
 tslib_1.__exportStar(require("./Interfaces"), exports);
 tslib_1.__exportStar(require("./ListAnnotationImportJobsPaginator"), exports);
 tslib_1.__exportStar(require("./ListAnnotationStoresPaginator"), exports);
+tslib_1.__exportStar(require("./ListMultipartReadSetUploadsPaginator"), exports);
 tslib_1.__exportStar(require("./ListReadSetActivationJobsPaginator"), exports);
 tslib_1.__exportStar(require("./ListReadSetExportJobsPaginator"), exports);
 tslib_1.__exportStar(require("./ListReadSetImportJobsPaginator"), exports);
+tslib_1.__exportStar(require("./ListReadSetUploadPartsPaginator"), exports);
 tslib_1.__exportStar(require("./ListReadSetsPaginator"), exports);
 tslib_1.__exportStar(require("./ListReferenceImportJobsPaginator"), exports);
 tslib_1.__exportStar(require("./ListReferenceStoresPaginator"), exports);