@aws-sdk/client-omics 3.1014.0 → 3.1015.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +56 -7
- package/dist-cjs/index.js +141 -14
- package/dist-cjs/schemas/schemas_0.js +230 -32
- package/dist-es/Omics.js +18 -0
- package/dist-es/commands/CancelRunBatchCommand.js +16 -0
- package/dist-es/commands/DeleteBatchCommand.js +16 -0
- package/dist-es/commands/DeleteRunBatchCommand.js +16 -0
- package/dist-es/commands/GetBatchCommand.js +16 -0
- package/dist-es/commands/ListBatchCommand.js +16 -0
- package/dist-es/commands/ListRunsInBatchCommand.js +16 -0
- package/dist-es/commands/StartRunBatchCommand.js +16 -0
- package/dist-es/commands/index.js +7 -0
- package/dist-es/models/enums.js +33 -14
- package/dist-es/pagination/ListBatchPaginator.js +4 -0
- package/dist-es/pagination/ListRunsInBatchPaginator.js +4 -0
- package/dist-es/pagination/index.js +2 -0
- package/dist-es/schemas/schemas_0.js +222 -24
- package/dist-types/Omics.d.ts +64 -0
- package/dist-types/OmicsClient.d.ts +9 -2
- package/dist-types/commands/CancelAnnotationImportJobCommand.d.ts +1 -1
- package/dist-types/commands/CancelRunBatchCommand.d.ts +96 -0
- package/dist-types/commands/CancelVariantImportJobCommand.d.ts +1 -1
- package/dist-types/commands/CreateAnnotationStoreCommand.d.ts +1 -1
- package/dist-types/commands/CreateVariantStoreCommand.d.ts +1 -1
- package/dist-types/commands/DeleteAnnotationStoreCommand.d.ts +1 -1
- package/dist-types/commands/DeleteBatchCommand.d.ts +96 -0
- package/dist-types/commands/DeleteRunBatchCommand.d.ts +96 -0
- package/dist-types/commands/DeleteVariantStoreCommand.d.ts +1 -1
- package/dist-types/commands/GetAnnotationImportJobCommand.d.ts +1 -1
- package/dist-types/commands/GetAnnotationStoreCommand.d.ts +1 -1
- package/dist-types/commands/GetBatchCommand.d.ts +146 -0
- package/dist-types/commands/GetRunCommand.d.ts +1 -0
- package/dist-types/commands/GetVariantImportJobCommand.d.ts +1 -1
- package/dist-types/commands/GetVariantStoreCommand.d.ts +1 -1
- package/dist-types/commands/ListAnnotationImportJobsCommand.d.ts +1 -1
- package/dist-types/commands/ListAnnotationStoresCommand.d.ts +1 -1
- package/dist-types/commands/ListBatchCommand.d.ts +103 -0
- package/dist-types/commands/ListRunsCommand.d.ts +2 -0
- package/dist-types/commands/ListRunsInBatchCommand.d.ts +114 -0
- package/dist-types/commands/ListVariantImportJobsCommand.d.ts +1 -1
- package/dist-types/commands/ListVariantStoresCommand.d.ts +1 -1
- package/dist-types/commands/StartAnnotationImportJobCommand.d.ts +1 -1
- package/dist-types/commands/StartRunBatchCommand.d.ts +144 -0
- package/dist-types/commands/StartVariantImportJobCommand.d.ts +1 -1
- package/dist-types/commands/UpdateAnnotationStoreCommand.d.ts +1 -1
- package/dist-types/commands/UpdateVariantStoreCommand.d.ts +1 -1
- package/dist-types/commands/index.d.ts +7 -0
- package/dist-types/models/enums.d.ts +73 -38
- package/dist-types/models/models_0.d.ts +648 -2
- package/dist-types/pagination/ListBatchPaginator.d.ts +7 -0
- package/dist-types/pagination/ListRunsInBatchPaginator.d.ts +7 -0
- package/dist-types/pagination/index.d.ts +2 -0
- package/dist-types/schemas/schemas_0.d.ts +27 -0
- package/dist-types/ts3.4/Omics.d.ts +134 -0
- package/dist-types/ts3.4/OmicsClient.d.ts +42 -0
- package/dist-types/ts3.4/commands/CancelRunBatchCommand.d.ts +50 -0
- package/dist-types/ts3.4/commands/DeleteBatchCommand.d.ts +45 -0
- package/dist-types/ts3.4/commands/DeleteRunBatchCommand.d.ts +50 -0
- package/dist-types/ts3.4/commands/GetBatchCommand.d.ts +47 -0
- package/dist-types/ts3.4/commands/ListBatchCommand.d.ts +47 -0
- package/dist-types/ts3.4/commands/ListRunsInBatchCommand.d.ts +50 -0
- package/dist-types/ts3.4/commands/StartRunBatchCommand.d.ts +50 -0
- package/dist-types/ts3.4/commands/index.d.ts +7 -0
- package/dist-types/ts3.4/models/enums.d.ts +40 -18
- package/dist-types/ts3.4/models/models_0.d.ts +164 -0
- package/dist-types/ts3.4/pagination/ListBatchPaginator.d.ts +11 -0
- package/dist-types/ts3.4/pagination/ListRunsInBatchPaginator.d.ts +11 -0
- package/dist-types/ts3.4/pagination/index.d.ts +2 -0
- package/dist-types/ts3.4/schemas/schemas_0.d.ts +27 -0
- package/package.json +5 -5
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@@ -27,7 +27,7 @@ declare const GetAnnotationImportJobCommand_base: {
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getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
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};
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/**
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* <important> <p>Amazon Web Services HealthOmics variant stores and annotation stores
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* <important> <p>Amazon Web Services HealthOmics variant stores and annotation stores are no longer open to new customers. Existing customers can continue to use the service as normal. For more information, see <a href="https://docs.aws.amazon.com/omics/latest/dev/variant-store-availability-change.html"> Amazon Web Services HealthOmics variant store and annotation store availability change</a>.</p> </important> <p>Gets information about an annotation import job.</p>
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* @example
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* Use a bare-bones client and the command you need to make an API call.
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* ```javascript
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@@ -27,7 +27,7 @@ declare const GetAnnotationStoreCommand_base: {
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getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
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};
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/**
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* <important> <p>Amazon Web Services HealthOmics variant stores and annotation stores
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* <important> <p>Amazon Web Services HealthOmics variant stores and annotation stores are no longer open to new customers. Existing customers can continue to use the service as normal. For more information, see <a href="https://docs.aws.amazon.com/omics/latest/dev/variant-store-availability-change.html"> Amazon Web Services HealthOmics variant store and annotation store availability change</a>.</p> </important> <p>Gets information about an annotation store.</p>
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* @example
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* Use a bare-bones client and the command you need to make an API call.
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* ```javascript
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@@ -0,0 +1,146 @@
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import { Command as $Command } from "@smithy/smithy-client";
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import type { MetadataBearer as __MetadataBearer } from "@smithy/types";
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import type { GetBatchRequest, GetBatchResponse } from "../models/models_0";
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import type { OmicsClientResolvedConfig, ServiceInputTypes, ServiceOutputTypes } from "../OmicsClient";
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/**
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* @public
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*/
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export type { __MetadataBearer };
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export { $Command };
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/**
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* @public
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*
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* The input for {@link GetBatchCommand}.
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*/
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export interface GetBatchCommandInput extends GetBatchRequest {
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}
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/**
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* @public
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*
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* The output of {@link GetBatchCommand}.
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*/
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export interface GetBatchCommandOutput extends GetBatchResponse, __MetadataBearer {
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}
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declare const GetBatchCommand_base: {
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new (input: GetBatchCommandInput): import("@smithy/smithy-client").CommandImpl<GetBatchCommandInput, GetBatchCommandOutput, OmicsClientResolvedConfig, ServiceInputTypes, ServiceOutputTypes>;
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new (input: GetBatchCommandInput): import("@smithy/smithy-client").CommandImpl<GetBatchCommandInput, GetBatchCommandOutput, OmicsClientResolvedConfig, ServiceInputTypes, ServiceOutputTypes>;
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getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
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};
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/**
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* <p>Retrieves details and current status for a specific run batch, including submission progress and run execution counts.</p>
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* @example
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* Use a bare-bones client and the command you need to make an API call.
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* ```javascript
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* import { OmicsClient, GetBatchCommand } from "@aws-sdk/client-omics"; // ES Modules import
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* // const { OmicsClient, GetBatchCommand } = require("@aws-sdk/client-omics"); // CommonJS import
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* // import type { OmicsClientConfig } from "@aws-sdk/client-omics";
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* const config = {}; // type is OmicsClientConfig
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* const client = new OmicsClient(config);
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* const input = { // GetBatchRequest
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* batchId: "STRING_VALUE", // required
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* };
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* const command = new GetBatchCommand(input);
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* const response = await client.send(command);
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* // { // GetBatchResponse
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* // id: "STRING_VALUE",
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* // arn: "STRING_VALUE",
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* // uuid: "STRING_VALUE",
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* // name: "STRING_VALUE",
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* // status: "STRING_VALUE",
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* // tags: { // TagMap
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* // "<keys>": "STRING_VALUE",
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* // },
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* // totalRuns: Number("int"),
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* // defaultRunSetting: { // DefaultRunSetting
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* // workflowId: "STRING_VALUE", // required
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* // workflowType: "STRING_VALUE",
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* // roleArn: "STRING_VALUE", // required
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* // name: "STRING_VALUE",
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* // cacheId: "STRING_VALUE",
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* // cacheBehavior: "STRING_VALUE",
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* // runGroupId: "STRING_VALUE",
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* // priority: Number("int"),
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* // parameters: "DOCUMENT_VALUE",
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* // storageCapacity: Number("int"),
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* // outputUri: "STRING_VALUE",
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* // logLevel: "STRING_VALUE",
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* // runTags: {
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* // "<keys>": "STRING_VALUE",
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* // },
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* // retentionMode: "STRING_VALUE",
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* // storageType: "STRING_VALUE",
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* // workflowOwnerId: "STRING_VALUE",
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* // outputBucketOwnerId: "STRING_VALUE",
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* // workflowVersionName: "STRING_VALUE",
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* // },
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* // submissionSummary: { // SubmissionSummary
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* // successfulStartSubmissionCount: Number("int"),
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* // failedStartSubmissionCount: Number("int"),
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* // pendingStartSubmissionCount: Number("int"),
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* // successfulCancelSubmissionCount: Number("int"),
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* // failedCancelSubmissionCount: Number("int"),
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* // successfulDeleteSubmissionCount: Number("int"),
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* // failedDeleteSubmissionCount: Number("int"),
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* // },
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* // runSummary: { // RunSummary
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* // pendingRunCount: Number("int"),
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* // startingRunCount: Number("int"),
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* // runningRunCount: Number("int"),
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* // stoppingRunCount: Number("int"),
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* // completedRunCount: Number("int"),
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* // deletedRunCount: Number("int"),
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* // failedRunCount: Number("int"),
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* // cancelledRunCount: Number("int"),
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* // },
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* // creationTime: new Date("TIMESTAMP"),
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* // submittedTime: new Date("TIMESTAMP"),
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* // processedTime: new Date("TIMESTAMP"),
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* // failedTime: new Date("TIMESTAMP"),
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* // failureReason: "STRING_VALUE",
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* // };
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*
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* ```
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*
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* @param GetBatchCommandInput - {@link GetBatchCommandInput}
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* @returns {@link GetBatchCommandOutput}
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* @see {@link GetBatchCommandInput} for command's `input` shape.
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* @see {@link GetBatchCommandOutput} for command's `response` shape.
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* @see {@link OmicsClientResolvedConfig | config} for OmicsClient's `config` shape.
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*
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* @throws {@link AccessDeniedException} (client fault)
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* <p>You do not have sufficient access to perform this action.</p>
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*
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* @throws {@link InternalServerException} (server fault)
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* <p>An unexpected error occurred. Try the request again.</p>
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*
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* @throws {@link RequestTimeoutException} (client fault)
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* <p>The request timed out.</p>
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*
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* @throws {@link ResourceNotFoundException} (client fault)
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* <p>The target resource was not found in the current Region.</p>
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*
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* @throws {@link ThrottlingException} (client fault)
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* <p>The request was denied due to request throttling.</p>
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*
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* @throws {@link ValidationException} (client fault)
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* <p>The input fails to satisfy the constraints specified by an AWS service.</p>
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*
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* @throws {@link OmicsServiceException}
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* <p>Base exception class for all service exceptions from Omics service.</p>
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*
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*
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* @public
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*/
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export declare class GetBatchCommand extends GetBatchCommand_base {
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/** @internal type navigation helper, not in runtime. */
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protected static __types: {
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api: {
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input: GetBatchRequest;
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output: GetBatchResponse;
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};
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sdk: {
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input: GetBatchCommandInput;
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output: GetBatchCommandOutput;
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};
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};
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}
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* // runGroupId: "STRING_VALUE",
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* // batchId: "STRING_VALUE",
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getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
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};
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/**
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* <important> <p>Amazon Web Services HealthOmics variant stores and annotation stores
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* <important> <p>Amazon Web Services HealthOmics variant stores and annotation stores are no longer open to new customers. Existing customers can continue to use the service as normal. For more information, see <a href="https://docs.aws.amazon.com/omics/latest/dev/variant-store-availability-change.html"> Amazon Web Services HealthOmics variant store and annotation store availability change</a>.</p> </important> <p>Gets information about a variant import job.</p>
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* @example
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* ```javascript
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/**
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* <important> <p>Amazon Web Services HealthOmics variant stores and annotation stores are no longer open to new customers. Existing customers can continue to use the service as normal. For more information, see <a href="https://docs.aws.amazon.com/omics/latest/dev/variant-store-availability-change.html"> Amazon Web Services HealthOmics variant store and annotation store availability change</a>.</p> </important> <p>Gets information about a variant store.</p>
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* ```javascript
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/**
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* <important> <p>Amazon Web Services HealthOmics variant stores and annotation stores are no longer open to new customers. Existing customers can continue to use the service as normal. For more information, see <a href="https://docs.aws.amazon.com/omics/latest/dev/variant-store-availability-change.html"> Amazon Web Services HealthOmics variant store and annotation store availability change</a>.</p> </important> <p>Retrieves a list of annotation import jobs.</p>
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/**
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* <important> <p>Amazon Web Services HealthOmics variant stores and annotation stores are no longer open to new customers. Existing customers can continue to use the service as normal. For more information, see <a href="https://docs.aws.amazon.com/omics/latest/dev/variant-store-availability-change.html"> Amazon Web Services HealthOmics variant store and annotation store availability change</a>.</p> </important> <p>Retrieves a list of annotation stores.</p>
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* ```javascript
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import { Command as $Command } from "@smithy/smithy-client";
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import type { MetadataBearer as __MetadataBearer } from "@smithy/types";
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import type { ListBatchRequest, ListBatchResponse } from "../models/models_0";
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import type { OmicsClientResolvedConfig, ServiceInputTypes, ServiceOutputTypes } from "../OmicsClient";
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/**
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*/
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export type { __MetadataBearer };
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export { $Command };
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/**
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*
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* The input for {@link ListBatchCommand}.
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*/
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export interface ListBatchCommandInput extends ListBatchRequest {
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}
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/**
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* @public
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*
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* The output of {@link ListBatchCommand}.
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*/
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export interface ListBatchCommandOutput extends ListBatchResponse, __MetadataBearer {
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}
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declare const ListBatchCommand_base: {
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new (input: ListBatchCommandInput): import("@smithy/smithy-client").CommandImpl<ListBatchCommandInput, ListBatchCommandOutput, OmicsClientResolvedConfig, ServiceInputTypes, ServiceOutputTypes>;
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new (...[input]: [] | [ListBatchCommandInput]): import("@smithy/smithy-client").CommandImpl<ListBatchCommandInput, ListBatchCommandOutput, OmicsClientResolvedConfig, ServiceInputTypes, ServiceOutputTypes>;
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getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
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};
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/**
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* <p>Returns a list of run batches in your account, with optional filtering by status, name, or run group. Results are paginated. Only one filter per call is supported.</p>
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* @example
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* Use a bare-bones client and the command you need to make an API call.
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* ```javascript
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* import { OmicsClient, ListBatchCommand } from "@aws-sdk/client-omics"; // ES Modules import
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* // const { OmicsClient, ListBatchCommand } = require("@aws-sdk/client-omics"); // CommonJS import
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* // import type { OmicsClientConfig } from "@aws-sdk/client-omics";
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* const config = {}; // type is OmicsClientConfig
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* const client = new OmicsClient(config);
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* const input = { // ListBatchRequest
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* maxItems: Number("int"),
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* startingToken: "STRING_VALUE",
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* status: "STRING_VALUE",
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* name: "STRING_VALUE",
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* runGroupId: "STRING_VALUE",
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* };
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* const command = new ListBatchCommand(input);
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* const response = await client.send(command);
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* // { // ListBatchResponse
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* // items: [ // BatchList
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* // { // BatchListItem
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* // id: "STRING_VALUE",
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* // name: "STRING_VALUE",
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* // status: "STRING_VALUE",
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* // createdAt: new Date("TIMESTAMP"),
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* // totalRuns: Number("int"),
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* // workflowId: "STRING_VALUE",
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* // },
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* // ],
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* // nextToken: "STRING_VALUE",
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* // };
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*
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* ```
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*
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* @param ListBatchCommandInput - {@link ListBatchCommandInput}
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* @returns {@link ListBatchCommandOutput}
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* @see {@link ListBatchCommandInput} for command's `input` shape.
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* @see {@link ListBatchCommandOutput} for command's `response` shape.
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* @see {@link OmicsClientResolvedConfig | config} for OmicsClient's `config` shape.
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*
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* @throws {@link AccessDeniedException} (client fault)
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* <p>You do not have sufficient access to perform this action.</p>
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*
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* @throws {@link InternalServerException} (server fault)
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* <p>An unexpected error occurred. Try the request again.</p>
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*
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* @throws {@link RequestTimeoutException} (client fault)
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* <p>The request timed out.</p>
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*
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* @throws {@link ThrottlingException} (client fault)
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* <p>The request was denied due to request throttling.</p>
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*
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* @throws {@link ValidationException} (client fault)
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* <p>The input fails to satisfy the constraints specified by an AWS service.</p>
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*
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* @throws {@link OmicsServiceException}
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* <p>Base exception class for all service exceptions from Omics service.</p>
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*
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*
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* @public
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*/
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export declare class ListBatchCommand extends ListBatchCommand_base {
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/** @internal type navigation helper, not in runtime. */
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protected static __types: {
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api: {
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input: ListBatchRequest;
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output: ListBatchResponse;
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};
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sdk: {
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input: ListBatchCommandInput;
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output: ListBatchCommandOutput;
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};
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};
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}
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@@ -39,6 +39,7 @@ declare const ListRunsCommand_base: {
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* const input = { // ListRunsRequest
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* name: "STRING_VALUE",
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* runGroupId: "STRING_VALUE",
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* batchId: "STRING_VALUE",
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* startingToken: "STRING_VALUE",
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* maxResults: Number("int"),
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* status: "STRING_VALUE",
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@@ -52,6 +53,7 @@ declare const ListRunsCommand_base: {
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* // id: "STRING_VALUE",
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* // status: "STRING_VALUE",
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* // workflowId: "STRING_VALUE",
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* // batchId: "STRING_VALUE",
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* // name: "STRING_VALUE",
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* // priority: Number("int"),
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* // storageCapacity: Number("int"),
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@@ -0,0 +1,114 @@
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1
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import { Command as $Command } from "@smithy/smithy-client";
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import type { MetadataBearer as __MetadataBearer } from "@smithy/types";
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import type { ListRunsInBatchRequest, ListRunsInBatchResponse } from "../models/models_0";
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import type { OmicsClientResolvedConfig, ServiceInputTypes, ServiceOutputTypes } from "../OmicsClient";
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/**
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* @public
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*/
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export type { __MetadataBearer };
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export { $Command };
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/**
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* @public
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*
|
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* The input for {@link ListRunsInBatchCommand}.
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*/
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export interface ListRunsInBatchCommandInput extends ListRunsInBatchRequest {
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}
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/**
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* @public
|
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*
|
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* The output of {@link ListRunsInBatchCommand}.
|
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+
*/
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+
export interface ListRunsInBatchCommandOutput extends ListRunsInBatchResponse, __MetadataBearer {
|
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+
}
|
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|
+
declare const ListRunsInBatchCommand_base: {
|
|
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|
+
new (input: ListRunsInBatchCommandInput): import("@smithy/smithy-client").CommandImpl<ListRunsInBatchCommandInput, ListRunsInBatchCommandOutput, OmicsClientResolvedConfig, ServiceInputTypes, ServiceOutputTypes>;
|
|
26
|
+
new (input: ListRunsInBatchCommandInput): import("@smithy/smithy-client").CommandImpl<ListRunsInBatchCommandInput, ListRunsInBatchCommandOutput, OmicsClientResolvedConfig, ServiceInputTypes, ServiceOutputTypes>;
|
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|
+
getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
|
|
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|
+
};
|
|
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|
+
/**
|
|
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|
+
* <p>Returns a paginated list of individual workflow runs within a specific batch. Use this operation to map each <code>runSettingId</code> to its HealthOmics-generated <code>runId</code>, and to check the submission status of each run. Only one filter per call is supported.</p>
|
|
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|
+
* @example
|
|
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+
* Use a bare-bones client and the command you need to make an API call.
|
|
33
|
+
* ```javascript
|
|
34
|
+
* import { OmicsClient, ListRunsInBatchCommand } from "@aws-sdk/client-omics"; // ES Modules import
|
|
35
|
+
* // const { OmicsClient, ListRunsInBatchCommand } = require("@aws-sdk/client-omics"); // CommonJS import
|
|
36
|
+
* // import type { OmicsClientConfig } from "@aws-sdk/client-omics";
|
|
37
|
+
* const config = {}; // type is OmicsClientConfig
|
|
38
|
+
* const client = new OmicsClient(config);
|
|
39
|
+
* const input = { // ListRunsInBatchRequest
|
|
40
|
+
* batchId: "STRING_VALUE", // required
|
|
41
|
+
* maxItems: Number("int"),
|
|
42
|
+
* startingToken: "STRING_VALUE",
|
|
43
|
+
* submissionStatus: "STRING_VALUE",
|
|
44
|
+
* runSettingId: "STRING_VALUE",
|
|
45
|
+
* runId: "STRING_VALUE",
|
|
46
|
+
* };
|
|
47
|
+
* const command = new ListRunsInBatchCommand(input);
|
|
48
|
+
* const response = await client.send(command);
|
|
49
|
+
* // { // ListRunsInBatchResponse
|
|
50
|
+
* // runs: [ // RunBatchList
|
|
51
|
+
* // { // RunBatchListItem
|
|
52
|
+
* // runSettingId: "STRING_VALUE",
|
|
53
|
+
* // runId: "STRING_VALUE",
|
|
54
|
+
* // runInternalUuid: "STRING_VALUE",
|
|
55
|
+
* // runArn: "STRING_VALUE",
|
|
56
|
+
* // submissionStatus: "STRING_VALUE",
|
|
57
|
+
* // submissionFailureReason: "STRING_VALUE",
|
|
58
|
+
* // submissionFailureMessage: "STRING_VALUE",
|
|
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|
+
* // },
|
|
60
|
+
* // ],
|
|
61
|
+
* // nextToken: "STRING_VALUE",
|
|
62
|
+
* // };
|
|
63
|
+
*
|
|
64
|
+
* ```
|
|
65
|
+
*
|
|
66
|
+
* @param ListRunsInBatchCommandInput - {@link ListRunsInBatchCommandInput}
|
|
67
|
+
* @returns {@link ListRunsInBatchCommandOutput}
|
|
68
|
+
* @see {@link ListRunsInBatchCommandInput} for command's `input` shape.
|
|
69
|
+
* @see {@link ListRunsInBatchCommandOutput} for command's `response` shape.
|
|
70
|
+
* @see {@link OmicsClientResolvedConfig | config} for OmicsClient's `config` shape.
|
|
71
|
+
*
|
|
72
|
+
* @throws {@link AccessDeniedException} (client fault)
|
|
73
|
+
* <p>You do not have sufficient access to perform this action.</p>
|
|
74
|
+
*
|
|
75
|
+
* @throws {@link ConflictException} (client fault)
|
|
76
|
+
* <p>The request cannot be applied to the target resource in its current state.</p>
|
|
77
|
+
*
|
|
78
|
+
* @throws {@link InternalServerException} (server fault)
|
|
79
|
+
* <p>An unexpected error occurred. Try the request again.</p>
|
|
80
|
+
*
|
|
81
|
+
* @throws {@link RequestTimeoutException} (client fault)
|
|
82
|
+
* <p>The request timed out.</p>
|
|
83
|
+
*
|
|
84
|
+
* @throws {@link ResourceNotFoundException} (client fault)
|
|
85
|
+
* <p>The target resource was not found in the current Region.</p>
|
|
86
|
+
*
|
|
87
|
+
* @throws {@link ServiceQuotaExceededException} (client fault)
|
|
88
|
+
* <p>The request exceeds a service quota.</p>
|
|
89
|
+
*
|
|
90
|
+
* @throws {@link ThrottlingException} (client fault)
|
|
91
|
+
* <p>The request was denied due to request throttling.</p>
|
|
92
|
+
*
|
|
93
|
+
* @throws {@link ValidationException} (client fault)
|
|
94
|
+
* <p>The input fails to satisfy the constraints specified by an AWS service.</p>
|
|
95
|
+
*
|
|
96
|
+
* @throws {@link OmicsServiceException}
|
|
97
|
+
* <p>Base exception class for all service exceptions from Omics service.</p>
|
|
98
|
+
*
|
|
99
|
+
*
|
|
100
|
+
* @public
|
|
101
|
+
*/
|
|
102
|
+
export declare class ListRunsInBatchCommand extends ListRunsInBatchCommand_base {
|
|
103
|
+
/** @internal type navigation helper, not in runtime. */
|
|
104
|
+
protected static __types: {
|
|
105
|
+
api: {
|
|
106
|
+
input: ListRunsInBatchRequest;
|
|
107
|
+
output: ListRunsInBatchResponse;
|
|
108
|
+
};
|
|
109
|
+
sdk: {
|
|
110
|
+
input: ListRunsInBatchCommandInput;
|
|
111
|
+
output: ListRunsInBatchCommandOutput;
|
|
112
|
+
};
|
|
113
|
+
};
|
|
114
|
+
}
|
|
@@ -27,7 +27,7 @@ declare const ListVariantImportJobsCommand_base: {
|
|
|
27
27
|
getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
|
|
28
28
|
};
|
|
29
29
|
/**
|
|
30
|
-
* <important> <p>Amazon Web Services HealthOmics variant stores and annotation stores
|
|
30
|
+
* <important> <p>Amazon Web Services HealthOmics variant stores and annotation stores are no longer open to new customers. Existing customers can continue to use the service as normal. For more information, see <a href="https://docs.aws.amazon.com/omics/latest/dev/variant-store-availability-change.html"> Amazon Web Services HealthOmics variant store and annotation store availability change</a>.</p> </important> <p>Retrieves a list of variant import jobs.</p>
|
|
31
31
|
* @example
|
|
32
32
|
* Use a bare-bones client and the command you need to make an API call.
|
|
33
33
|
* ```javascript
|
|
@@ -27,7 +27,7 @@ declare const ListVariantStoresCommand_base: {
|
|
|
27
27
|
getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
|
|
28
28
|
};
|
|
29
29
|
/**
|
|
30
|
-
* <important> <p>Amazon Web Services HealthOmics variant stores and annotation stores
|
|
30
|
+
* <important> <p>Amazon Web Services HealthOmics variant stores and annotation stores are no longer open to new customers. Existing customers can continue to use the service as normal. For more information, see <a href="https://docs.aws.amazon.com/omics/latest/dev/variant-store-availability-change.html"> Amazon Web Services HealthOmics variant store and annotation store availability change</a>.</p> </important> <p>Retrieves a list of variant stores.</p>
|
|
31
31
|
* @example
|
|
32
32
|
* Use a bare-bones client and the command you need to make an API call.
|
|
33
33
|
* ```javascript
|
|
@@ -27,7 +27,7 @@ declare const StartAnnotationImportJobCommand_base: {
|
|
|
27
27
|
getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
|
|
28
28
|
};
|
|
29
29
|
/**
|
|
30
|
-
* <important> <p>Amazon Web Services HealthOmics variant stores and annotation stores
|
|
30
|
+
* <important> <p>Amazon Web Services HealthOmics variant stores and annotation stores are no longer open to new customers. Existing customers can continue to use the service as normal. For more information, see <a href="https://docs.aws.amazon.com/omics/latest/dev/variant-store-availability-change.html"> Amazon Web Services HealthOmics variant store and annotation store availability change</a>.</p> </important> <p>Starts an annotation import job.</p>
|
|
31
31
|
* @example
|
|
32
32
|
* Use a bare-bones client and the command you need to make an API call.
|
|
33
33
|
* ```javascript
|
|
@@ -0,0 +1,144 @@
|
|
|
1
|
+
import { Command as $Command } from "@smithy/smithy-client";
|
|
2
|
+
import type { MetadataBearer as __MetadataBearer } from "@smithy/types";
|
|
3
|
+
import type { StartRunBatchRequest, StartRunBatchResponse } from "../models/models_0";
|
|
4
|
+
import type { OmicsClientResolvedConfig, ServiceInputTypes, ServiceOutputTypes } from "../OmicsClient";
|
|
5
|
+
/**
|
|
6
|
+
* @public
|
|
7
|
+
*/
|
|
8
|
+
export type { __MetadataBearer };
|
|
9
|
+
export { $Command };
|
|
10
|
+
/**
|
|
11
|
+
* @public
|
|
12
|
+
*
|
|
13
|
+
* The input for {@link StartRunBatchCommand}.
|
|
14
|
+
*/
|
|
15
|
+
export interface StartRunBatchCommandInput extends StartRunBatchRequest {
|
|
16
|
+
}
|
|
17
|
+
/**
|
|
18
|
+
* @public
|
|
19
|
+
*
|
|
20
|
+
* The output of {@link StartRunBatchCommand}.
|
|
21
|
+
*/
|
|
22
|
+
export interface StartRunBatchCommandOutput extends StartRunBatchResponse, __MetadataBearer {
|
|
23
|
+
}
|
|
24
|
+
declare const StartRunBatchCommand_base: {
|
|
25
|
+
new (input: StartRunBatchCommandInput): import("@smithy/smithy-client").CommandImpl<StartRunBatchCommandInput, StartRunBatchCommandOutput, OmicsClientResolvedConfig, ServiceInputTypes, ServiceOutputTypes>;
|
|
26
|
+
new (input: StartRunBatchCommandInput): import("@smithy/smithy-client").CommandImpl<StartRunBatchCommandInput, StartRunBatchCommandOutput, OmicsClientResolvedConfig, ServiceInputTypes, ServiceOutputTypes>;
|
|
27
|
+
getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
|
|
28
|
+
};
|
|
29
|
+
/**
|
|
30
|
+
* <p>Starts a batch of workflow runs. You can group up to 100,000 runs into a single batch that share a common configuration defined in <code>defaultRunSetting</code>. Per-run overrides can be provided either inline via <code>inlineSettings</code> (up to 100 runs) or via a JSON file stored in Amazon S3 via <code>s3UriSettings</code> (up to 100,000 runs).</p> <p> <code>StartRunBatch</code> validates common fields synchronously and returns immediately with a batch ID and status <code>PENDING</code>. Runs are submitted gradually and asynchronously at a rate governed by your <code>StartRun</code> throughput quota.</p>
|
|
31
|
+
* @example
|
|
32
|
+
* Use a bare-bones client and the command you need to make an API call.
|
|
33
|
+
* ```javascript
|
|
34
|
+
* import { OmicsClient, StartRunBatchCommand } from "@aws-sdk/client-omics"; // ES Modules import
|
|
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+
* // const { OmicsClient, StartRunBatchCommand } = require("@aws-sdk/client-omics"); // CommonJS import
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36
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* // import type { OmicsClientConfig } from "@aws-sdk/client-omics";
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37
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* const config = {}; // type is OmicsClientConfig
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* const client = new OmicsClient(config);
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* const input = { // StartRunBatchRequest
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* batchName: "STRING_VALUE",
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* requestId: "STRING_VALUE", // required
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* tags: { // TagMap
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* "<keys>": "STRING_VALUE",
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* },
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+
* defaultRunSetting: { // DefaultRunSetting
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+
* workflowId: "STRING_VALUE", // required
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+
* workflowType: "STRING_VALUE",
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* roleArn: "STRING_VALUE", // required
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* name: "STRING_VALUE",
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+
* cacheId: "STRING_VALUE",
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+
* cacheBehavior: "STRING_VALUE",
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* runGroupId: "STRING_VALUE",
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+
* priority: Number("int"),
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+
* parameters: "DOCUMENT_VALUE",
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+
* storageCapacity: Number("int"),
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+
* outputUri: "STRING_VALUE",
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57
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+
* logLevel: "STRING_VALUE",
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+
* runTags: {
|
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59
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+
* "<keys>": "STRING_VALUE",
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60
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+
* },
|
|
61
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+
* retentionMode: "STRING_VALUE",
|
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62
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+
* storageType: "STRING_VALUE",
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63
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+
* workflowOwnerId: "STRING_VALUE",
|
|
64
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+
* outputBucketOwnerId: "STRING_VALUE",
|
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65
|
+
* workflowVersionName: "STRING_VALUE",
|
|
66
|
+
* },
|
|
67
|
+
* batchRunSettings: { // BatchRunSettings Union: only one key present
|
|
68
|
+
* inlineSettings: [ // InlineSettings
|
|
69
|
+
* { // InlineSetting
|
|
70
|
+
* runSettingId: "STRING_VALUE", // required
|
|
71
|
+
* name: "STRING_VALUE",
|
|
72
|
+
* outputUri: "STRING_VALUE",
|
|
73
|
+
* priority: Number("int"),
|
|
74
|
+
* parameters: "DOCUMENT_VALUE",
|
|
75
|
+
* outputBucketOwnerId: "STRING_VALUE",
|
|
76
|
+
* runTags: "<TagMap>",
|
|
77
|
+
* },
|
|
78
|
+
* ],
|
|
79
|
+
* s3UriSettings: "STRING_VALUE",
|
|
80
|
+
* },
|
|
81
|
+
* };
|
|
82
|
+
* const command = new StartRunBatchCommand(input);
|
|
83
|
+
* const response = await client.send(command);
|
|
84
|
+
* // { // StartRunBatchResponse
|
|
85
|
+
* // id: "STRING_VALUE",
|
|
86
|
+
* // arn: "STRING_VALUE",
|
|
87
|
+
* // status: "STRING_VALUE",
|
|
88
|
+
* // uuid: "STRING_VALUE",
|
|
89
|
+
* // tags: { // TagMap
|
|
90
|
+
* // "<keys>": "STRING_VALUE",
|
|
91
|
+
* // },
|
|
92
|
+
* // };
|
|
93
|
+
*
|
|
94
|
+
* ```
|
|
95
|
+
*
|
|
96
|
+
* @param StartRunBatchCommandInput - {@link StartRunBatchCommandInput}
|
|
97
|
+
* @returns {@link StartRunBatchCommandOutput}
|
|
98
|
+
* @see {@link StartRunBatchCommandInput} for command's `input` shape.
|
|
99
|
+
* @see {@link StartRunBatchCommandOutput} for command's `response` shape.
|
|
100
|
+
* @see {@link OmicsClientResolvedConfig | config} for OmicsClient's `config` shape.
|
|
101
|
+
*
|
|
102
|
+
* @throws {@link AccessDeniedException} (client fault)
|
|
103
|
+
* <p>You do not have sufficient access to perform this action.</p>
|
|
104
|
+
*
|
|
105
|
+
* @throws {@link ConflictException} (client fault)
|
|
106
|
+
* <p>The request cannot be applied to the target resource in its current state.</p>
|
|
107
|
+
*
|
|
108
|
+
* @throws {@link InternalServerException} (server fault)
|
|
109
|
+
* <p>An unexpected error occurred. Try the request again.</p>
|
|
110
|
+
*
|
|
111
|
+
* @throws {@link RequestTimeoutException} (client fault)
|
|
112
|
+
* <p>The request timed out.</p>
|
|
113
|
+
*
|
|
114
|
+
* @throws {@link ResourceNotFoundException} (client fault)
|
|
115
|
+
* <p>The target resource was not found in the current Region.</p>
|
|
116
|
+
*
|
|
117
|
+
* @throws {@link ServiceQuotaExceededException} (client fault)
|
|
118
|
+
* <p>The request exceeds a service quota.</p>
|
|
119
|
+
*
|
|
120
|
+
* @throws {@link ThrottlingException} (client fault)
|
|
121
|
+
* <p>The request was denied due to request throttling.</p>
|
|
122
|
+
*
|
|
123
|
+
* @throws {@link ValidationException} (client fault)
|
|
124
|
+
* <p>The input fails to satisfy the constraints specified by an AWS service.</p>
|
|
125
|
+
*
|
|
126
|
+
* @throws {@link OmicsServiceException}
|
|
127
|
+
* <p>Base exception class for all service exceptions from Omics service.</p>
|
|
128
|
+
*
|
|
129
|
+
*
|
|
130
|
+
* @public
|
|
131
|
+
*/
|
|
132
|
+
export declare class StartRunBatchCommand extends StartRunBatchCommand_base {
|
|
133
|
+
/** @internal type navigation helper, not in runtime. */
|
|
134
|
+
protected static __types: {
|
|
135
|
+
api: {
|
|
136
|
+
input: StartRunBatchRequest;
|
|
137
|
+
output: StartRunBatchResponse;
|
|
138
|
+
};
|
|
139
|
+
sdk: {
|
|
140
|
+
input: StartRunBatchCommandInput;
|
|
141
|
+
output: StartRunBatchCommandOutput;
|
|
142
|
+
};
|
|
143
|
+
};
|
|
144
|
+
}
|
|
@@ -27,7 +27,7 @@ declare const StartVariantImportJobCommand_base: {
|
|
|
27
27
|
getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
|
|
28
28
|
};
|
|
29
29
|
/**
|
|
30
|
-
* <important> <p>Amazon Web Services HealthOmics variant stores and annotation stores
|
|
30
|
+
* <important> <p>Amazon Web Services HealthOmics variant stores and annotation stores are no longer open to new customers. Existing customers can continue to use the service as normal. For more information, see <a href="https://docs.aws.amazon.com/omics/latest/dev/variant-store-availability-change.html"> Amazon Web Services HealthOmics variant store and annotation store availability change</a>.</p> </important> <p>Starts a variant import job.</p>
|
|
31
31
|
* @example
|
|
32
32
|
* Use a bare-bones client and the command you need to make an API call.
|
|
33
33
|
* ```javascript
|