@aws-sdk/client-omics 3.1013.0 → 3.1015.0

package/README.md

@@ -22,16 +22,16 @@ To install this package, use the CLI of your favorite package manager:
 
 The AWS SDK is modulized by clients and commands.
 To send a request, you only need to import the `OmicsClient` and
-the commands you need, for example `ListRunsCommand`:
+the commands you need, for example `ListBatchCommand`:
 
 ```js
 // ES5 example
-const { OmicsClient, ListRunsCommand } = require("@aws-sdk/client-omics");
+const { OmicsClient, ListBatchCommand } = require("@aws-sdk/client-omics");
 ```
 
 ```ts
 // ES6+ example
-import { OmicsClient, ListRunsCommand } from "@aws-sdk/client-omics";
+import { OmicsClient, ListBatchCommand } from "@aws-sdk/client-omics";
 ```
 
 ### Usage
@@ -48,7 +48,7 @@ To send a request:
 const client = new OmicsClient({ region: "REGION" });
 
 const params = { /** input parameters */ };
-const command = new ListRunsCommand(params);
+const command = new ListBatchCommand(params);
 ```
 
 #### Async/await
@@ -104,7 +104,7 @@ const client = new Omics({ region: "REGION" });
 
 // async/await.
 try {
-  const data = await client.listRuns(params);
+  const data = await client.listBatch(params);
   // process data.
 } catch (error) {
   // error handling.
@@ -112,7 +112,7 @@ try {
 
 // Promises.
 client
-  .listRuns(params)
+  .listBatch(params)
   .then((data) => {
     // process data.
   })
@@ -121,7 +121,7 @@ client
   });
 
 // callbacks (not recommended).
-client.listRuns(params, (err, data) => {
+client.listBatch(params, (err, data) => {
   // process err and data.
 });
 ```
@@ -216,6 +216,13 @@ CancelRun
 </details>
 <details>
 <summary>
+CancelRunBatch
+</summary>
+
+[Command API Reference](https://docs.aws.amazon.com/AWSJavaScriptSDK/v3/latest/client/omics/command/CancelRunBatchCommand/) / [Input](https://docs.aws.amazon.com/AWSJavaScriptSDK/v3/latest/Package/-aws-sdk-client-omics/Interface/CancelRunBatchCommandInput/) / [Output](https://docs.aws.amazon.com/AWSJavaScriptSDK/v3/latest/Package/-aws-sdk-client-omics/Interface/CancelRunBatchCommandOutput/)
+</details>
+<details>
+<summary>
 CancelVariantImportJob
 </summary>
 
@@ -321,6 +328,13 @@ DeleteAnnotationStoreVersions
 </details>
 <details>
 <summary>
+DeleteBatch
+</summary>
+
+[Command API Reference](https://docs.aws.amazon.com/AWSJavaScriptSDK/v3/latest/client/omics/command/DeleteBatchCommand/) / [Input](https://docs.aws.amazon.com/AWSJavaScriptSDK/v3/latest/Package/-aws-sdk-client-omics/Interface/DeleteBatchCommandInput/) / [Output](https://docs.aws.amazon.com/AWSJavaScriptSDK/v3/latest/Package/-aws-sdk-client-omics/Interface/DeleteBatchCommandOutput/)
+</details>
+<details>
+<summary>
 DeleteReference
 </summary>
 
@@ -342,6 +356,13 @@ DeleteRun
 </details>
 <details>
 <summary>
+DeleteRunBatch
+</summary>
+
+[Command API Reference](https://docs.aws.amazon.com/AWSJavaScriptSDK/v3/latest/client/omics/command/DeleteRunBatchCommand/) / [Input](https://docs.aws.amazon.com/AWSJavaScriptSDK/v3/latest/Package/-aws-sdk-client-omics/Interface/DeleteRunBatchCommandInput/) / [Output](https://docs.aws.amazon.com/AWSJavaScriptSDK/v3/latest/Package/-aws-sdk-client-omics/Interface/DeleteRunBatchCommandOutput/)
+</details>
+<details>
+<summary>
 DeleteRunCache
 </summary>
 
@@ -419,6 +440,13 @@ GetAnnotationStoreVersion
 </details>
 <details>
 <summary>
+GetBatch
+</summary>
+
+[Command API Reference](https://docs.aws.amazon.com/AWSJavaScriptSDK/v3/latest/client/omics/command/GetBatchCommand/) / [Input](https://docs.aws.amazon.com/AWSJavaScriptSDK/v3/latest/Package/-aws-sdk-client-omics/Interface/GetBatchCommandInput/) / [Output](https://docs.aws.amazon.com/AWSJavaScriptSDK/v3/latest/Package/-aws-sdk-client-omics/Interface/GetBatchCommandOutput/)
+</details>
+<details>
+<summary>
 GetReadSet
 </summary>
 
@@ -580,6 +608,13 @@ ListAnnotationStoreVersions
 </details>
 <details>
 <summary>
+ListBatch
+</summary>
+
+[Command API Reference](https://docs.aws.amazon.com/AWSJavaScriptSDK/v3/latest/client/omics/command/ListBatchCommand/) / [Input](https://docs.aws.amazon.com/AWSJavaScriptSDK/v3/latest/Package/-aws-sdk-client-omics/Interface/ListBatchCommandInput/) / [Output](https://docs.aws.amazon.com/AWSJavaScriptSDK/v3/latest/Package/-aws-sdk-client-omics/Interface/ListBatchCommandOutput/)
+</details>
+<details>
+<summary>
 ListMultipartReadSetUploads
 </summary>
 
@@ -664,6 +699,13 @@ ListRuns
 </details>
 <details>
 <summary>
+ListRunsInBatch
+</summary>
+
+[Command API Reference](https://docs.aws.amazon.com/AWSJavaScriptSDK/v3/latest/client/omics/command/ListRunsInBatchCommand/) / [Input](https://docs.aws.amazon.com/AWSJavaScriptSDK/v3/latest/Package/-aws-sdk-client-omics/Interface/ListRunsInBatchCommandInput/) / [Output](https://docs.aws.amazon.com/AWSJavaScriptSDK/v3/latest/Package/-aws-sdk-client-omics/Interface/ListRunsInBatchCommandOutput/)
+</details>
+<details>
+<summary>
 ListRunTasks
 </summary>
 
@@ -769,6 +811,13 @@ StartRun
 </details>
 <details>
 <summary>
+StartRunBatch
+</summary>
+
+[Command API Reference](https://docs.aws.amazon.com/AWSJavaScriptSDK/v3/latest/client/omics/command/StartRunBatchCommand/) / [Input](https://docs.aws.amazon.com/AWSJavaScriptSDK/v3/latest/Package/-aws-sdk-client-omics/Interface/StartRunBatchCommandInput/) / [Output](https://docs.aws.amazon.com/AWSJavaScriptSDK/v3/latest/Package/-aws-sdk-client-omics/Interface/StartRunBatchCommandOutput/)
+</details>
+<details>
+<summary>
 StartVariantImportJob
 </summary>
 

package/dist-cjs/index.js

@@ -162,6 +162,18 @@ class CancelAnnotationImportJobCommand extends smithyClient.Command
     .build() {
 }
 
+class CancelRunBatchCommand extends smithyClient.Command
+    .classBuilder()
+    .ep(commonParams)
+    .m(function (Command, cs, config, o) {
+    return [middlewareEndpoint.getEndpointPlugin(config, Command.getEndpointParameterInstructions())];
+})
+    .s("Omics", "CancelRunBatch", {})
+    .n("OmicsClient", "CancelRunBatchCommand")
+    .sc(schemas_0.CancelRunBatch$)
+    .build() {
+}
+
 class CancelRunCommand extends smithyClient.Command
     .classBuilder()
     .ep(commonParams)
@@ -354,6 +366,18 @@ class DeleteAnnotationStoreVersionsCommand extends smithyClient.Command
     .build() {
 }
 
+class DeleteBatchCommand extends smithyClient.Command
+    .classBuilder()
+    .ep(commonParams)
+    .m(function (Command, cs, config, o) {
+    return [middlewareEndpoint.getEndpointPlugin(config, Command.getEndpointParameterInstructions())];
+})
+    .s("Omics", "DeleteBatch", {})
+    .n("OmicsClient", "DeleteBatchCommand")
+    .sc(schemas_0.DeleteBatch$)
+    .build() {
+}
+
 class DeleteReferenceCommand extends smithyClient.Command
     .classBuilder()
     .ep(commonParams)
@@ -378,6 +402,18 @@ class DeleteReferenceStoreCommand extends smithyClient.Command
     .build() {
 }
 
+class DeleteRunBatchCommand extends smithyClient.Command
+    .classBuilder()
+    .ep(commonParams)
+    .m(function (Command, cs, config, o) {
+    return [middlewareEndpoint.getEndpointPlugin(config, Command.getEndpointParameterInstructions())];
+})
+    .s("Omics", "DeleteRunBatch", {})
+    .n("OmicsClient", "DeleteRunBatchCommand")
+    .sc(schemas_0.DeleteRunBatch$)
+    .build() {
+}
+
 class DeleteRunCacheCommand extends smithyClient.Command
     .classBuilder()
     .ep(commonParams)
@@ -522,6 +558,18 @@ class GetAnnotationStoreVersionCommand extends smithyClient.Command
     .build() {
 }
 
+class GetBatchCommand extends smithyClient.Command
+    .classBuilder()
+    .ep(commonParams)
+    .m(function (Command, cs, config, o) {
+    return [middlewareEndpoint.getEndpointPlugin(config, Command.getEndpointParameterInstructions())];
+})
+    .s("Omics", "GetBatch", {})
+    .n("OmicsClient", "GetBatchCommand")
+    .sc(schemas_0.GetBatch$)
+    .build() {
+}
+
 class GetReadSetActivationJobCommand extends smithyClient.Command
     .classBuilder()
     .ep(commonParams)
@@ -798,6 +846,18 @@ class ListAnnotationStoreVersionsCommand extends smithyClient.Command
     .build() {
 }
 
+class ListBatchCommand extends smithyClient.Command
+    .classBuilder()
+    .ep(commonParams)
+    .m(function (Command, cs, config, o) {
+    return [middlewareEndpoint.getEndpointPlugin(config, Command.getEndpointParameterInstructions())];
+})
+    .s("Omics", "ListBatch", {})
+    .n("OmicsClient", "ListBatchCommand")
+    .sc(schemas_0.ListBatch$)
+    .build() {
+}
+
 class ListMultipartReadSetUploadsCommand extends smithyClient.Command
     .classBuilder()
     .ep(commonParams)
@@ -942,6 +1002,18 @@ class ListRunsCommand extends smithyClient.Command
     .build() {
 }
 
+class ListRunsInBatchCommand extends smithyClient.Command
+    .classBuilder()
+    .ep(commonParams)
+    .m(function (Command, cs, config, o) {
+    return [middlewareEndpoint.getEndpointPlugin(config, Command.getEndpointParameterInstructions())];
+})
+    .s("Omics", "ListRunsInBatch", {})
+    .n("OmicsClient", "ListRunsInBatchCommand")
+    .sc(schemas_0.ListRunsInBatch$)
+    .build() {
+}
+
 class ListRunTasksCommand extends smithyClient.Command
     .classBuilder()
     .ep(commonParams)
@@ -1110,6 +1182,18 @@ class StartReferenceImportJobCommand extends smithyClient.Command
     .build() {
 }
 
+class StartRunBatchCommand extends smithyClient.Command
+    .classBuilder()
+    .ep(commonParams)
+    .m(function (Command, cs, config, o) {
+    return [middlewareEndpoint.getEndpointPlugin(config, Command.getEndpointParameterInstructions())];
+})
+    .s("Omics", "StartRunBatch", {})
+    .n("OmicsClient", "StartRunBatchCommand")
+    .sc(schemas_0.StartRunBatch$)
+    .build() {
+}
+
 class StartRunCommand extends smithyClient.Command
     .classBuilder()
     .ep(commonParams)
@@ -1272,6 +1356,8 @@ const paginateListAnnotationStores = core.createPaginator(OmicsClient, ListAnnot
 
 const paginateListAnnotationStoreVersions = core.createPaginator(OmicsClient, ListAnnotationStoreVersionsCommand, "nextToken", "nextToken", "maxResults");
 
+const paginateListBatch = core.createPaginator(OmicsClient, ListBatchCommand, "startingToken", "nextToken", "maxItems");
+
 const paginateListMultipartReadSetUploads = core.createPaginator(OmicsClient, ListMultipartReadSetUploadsCommand, "nextToken", "nextToken", "maxResults");
 
 const paginateListReadSetActivationJobs = core.createPaginator(OmicsClient, ListReadSetActivationJobsCommand, "nextToken", "nextToken", "maxResults");
@@ -1294,6 +1380,8 @@ const paginateListRunCaches = core.createPaginator(OmicsClient, ListRunCachesCom
 
 const paginateListRunGroups = core.createPaginator(OmicsClient, ListRunGroupsCommand, "startingToken", "nextToken", "maxResults");
 
+const paginateListRunsInBatch = core.createPaginator(OmicsClient, ListRunsInBatchCommand, "startingToken", "nextToken", "maxItems");
+
 const paginateListRuns = core.createPaginator(OmicsClient, ListRunsCommand, "startingToken", "nextToken", "maxResults");
 
 const paginateListRunTasks = core.createPaginator(OmicsClient, ListRunTasksCommand, "startingToken", "nextToken", "maxResults");
@@ -2477,6 +2565,7 @@ const commands = {
     BatchDeleteReadSetCommand,
     CancelAnnotationImportJobCommand,
     CancelRunCommand,
+    CancelRunBatchCommand,
     CancelVariantImportJobCommand,
     CompleteMultipartReadSetUploadCommand,
     CreateAnnotationStoreCommand,
@@ -2492,9 +2581,11 @@ const commands = {
     CreateWorkflowVersionCommand,
     DeleteAnnotationStoreCommand,
     DeleteAnnotationStoreVersionsCommand,
+    DeleteBatchCommand,
     DeleteReferenceCommand,
     DeleteReferenceStoreCommand,
     DeleteRunCommand,
+    DeleteRunBatchCommand,
     DeleteRunCacheCommand,
     DeleteRunGroupCommand,
     DeleteS3AccessPolicyCommand,
@@ -2506,6 +2597,7 @@ const commands = {
     GetAnnotationImportJobCommand,
     GetAnnotationStoreCommand,
     GetAnnotationStoreVersionCommand,
+    GetBatchCommand,
     GetReadSetCommand,
     GetReadSetActivationJobCommand,
     GetReadSetExportJobCommand,
@@ -2529,6 +2621,7 @@ const commands = {
     ListAnnotationImportJobsCommand,
     ListAnnotationStoresCommand,
     ListAnnotationStoreVersionsCommand,
+    ListBatchCommand,
     ListMultipartReadSetUploadsCommand,
     ListReadSetActivationJobsCommand,
     ListReadSetExportJobsCommand,
@@ -2541,6 +2634,7 @@ const commands = {
     ListRunCachesCommand,
     ListRunGroupsCommand,
     ListRunsCommand,
+    ListRunsInBatchCommand,
     ListRunTasksCommand,
     ListSequenceStoresCommand,
     ListSharesCommand,
@@ -2556,6 +2650,7 @@ const commands = {
     StartReadSetImportJobCommand,
     StartReferenceImportJobCommand,
     StartRunCommand,
+    StartRunBatchCommand,
     StartVariantImportJobCommand,
     TagResourceCommand,
     UntagResourceCommand,
@@ -2573,6 +2668,7 @@ const paginators = {
     paginateListAnnotationImportJobs,
     paginateListAnnotationStores,
     paginateListAnnotationStoreVersions,
+    paginateListBatch,
     paginateListMultipartReadSetUploads,
     paginateListReadSetActivationJobs,
     paginateListReadSetExportJobs,
@@ -2585,6 +2681,7 @@ const paginators = {
     paginateListRunCaches,
     paginateListRunGroups,
     paginateListRuns,
+    paginateListRunsInBatch,
     paginateListRunTasks,
     paginateListSequenceStores,
     paginateListShares,
@@ -2698,6 +2795,17 @@ const VersionStatus = {
     FAILED: "FAILED",
     UPDATING: "UPDATING",
 };
+const BatchStatus = {
+    CANCELLED: "CANCELLED",
+    FAILED: "FAILED",
+    INPROGRESS: "INPROGRESS",
+    PENDING: "PENDING",
+    PROCESSED: "PROCESSED",
+    RUNS_DELETED: "RUNS_DELETED",
+    RUNS_DELETING: "RUNS_DELETING",
+    STOPPING: "STOPPING",
+    SUBMITTING: "SUBMITTING",
+};
 const CacheBehavior = {
     CACHE_ALWAYS: "CACHE_ALWAYS",
     CACHE_ON_FAILURE: "CACHE_ON_FAILURE",
@@ -2756,6 +2864,20 @@ const CreationType = {
     IMPORT: "IMPORT",
     UPLOAD: "UPLOAD",
 };
+const RunLogLevel = {
+    ALL: "ALL",
+    ERROR: "ERROR",
+    FATAL: "FATAL",
+    OFF: "OFF",
+};
+const RunRetentionMode = {
+    REMOVE: "REMOVE",
+    RETAIN: "RETAIN",
+};
+const WorkflowType = {
+    PRIVATE: "PRIVATE",
+    READY2RUN: "READY2RUN",
+};
 const ETagAlgorithm = {
     BAM_MD5UP: "BAM_MD5up",
     BAM_SHA256UP: "BAM_SHA256up",
@@ -2846,16 +2968,6 @@ const ReferenceStatus = {
 const RunExport = {
     DEFINITION: "DEFINITION",
 };
-const RunLogLevel = {
-    ALL: "ALL",
-    ERROR: "ERROR",
-    FATAL: "FATAL",
-    OFF: "OFF",
-};
-const RunRetentionMode = {
-    REMOVE: "REMOVE",
-    RETAIN: "RETAIN",
-};
 const RunStatus = {
     CANCELLED: "CANCELLED",
     COMPLETED: "COMPLETED",
@@ -2866,10 +2978,6 @@ const RunStatus = {
     STARTING: "STARTING",
     STOPPING: "STOPPING",
 };
-const WorkflowType = {
-    PRIVATE: "PRIVATE",
-    READY2RUN: "READY2RUN",
-};
 const TaskStatus = {
     CANCELLED: "CANCELLED",
     COMPLETED: "COMPLETED",
@@ -2887,6 +2995,14 @@ const WorkflowExport = {
     DEFINITION: "DEFINITION",
     README: "README",
 };
+const SubmissionStatus = {
+    CANCEL_FAILED: "CANCEL_FAILED",
+    CANCEL_SUCCESS: "CANCEL_SUCCESS",
+    DELETE_FAILED: "DELETE_FAILED",
+    DELETE_SUCCESS: "DELETE_SUCCESS",
+    FAILED: "FAILED",
+    SUCCESS: "SUCCESS",
+};
 const ResourceOwner = {
     OTHER: "OTHER",
     SELF: "SELF",
@@ -2900,8 +3016,10 @@ exports.Accelerators = Accelerators;
 exports.AcceptShareCommand = AcceptShareCommand;
 exports.AnnotationType = AnnotationType;
 exports.BatchDeleteReadSetCommand = BatchDeleteReadSetCommand;
+exports.BatchStatus = BatchStatus;
 exports.CacheBehavior = CacheBehavior;
 exports.CancelAnnotationImportJobCommand = CancelAnnotationImportJobCommand;
+exports.CancelRunBatchCommand = CancelRunBatchCommand;
 exports.CancelRunCommand = CancelRunCommand;
 exports.CancelVariantImportJobCommand = CancelVariantImportJobCommand;
 exports.CompleteMultipartReadSetUploadCommand = CompleteMultipartReadSetUploadCommand;
@@ -2919,8 +3037,10 @@ exports.CreateWorkflowVersionCommand = CreateWorkflowVersionCommand;
 exports.CreationType = CreationType;
 exports.DeleteAnnotationStoreCommand = DeleteAnnotationStoreCommand;
 exports.DeleteAnnotationStoreVersionsCommand = DeleteAnnotationStoreVersionsCommand;
+exports.DeleteBatchCommand = DeleteBatchCommand;
 exports.DeleteReferenceCommand = DeleteReferenceCommand;
 exports.DeleteReferenceStoreCommand = DeleteReferenceStoreCommand;
+exports.DeleteRunBatchCommand = DeleteRunBatchCommand;
 exports.DeleteRunCacheCommand = DeleteRunCacheCommand;
 exports.DeleteRunCommand = DeleteRunCommand;
 exports.DeleteRunGroupCommand = DeleteRunGroupCommand;
@@ -2938,6 +3058,7 @@ exports.FormatToHeaderKey = FormatToHeaderKey;
 exports.GetAnnotationImportJobCommand = GetAnnotationImportJobCommand;
 exports.GetAnnotationStoreCommand = GetAnnotationStoreCommand;
 exports.GetAnnotationStoreVersionCommand = GetAnnotationStoreVersionCommand;
+exports.GetBatchCommand = GetBatchCommand;
 exports.GetReadSetActivationJobCommand = GetReadSetActivationJobCommand;
 exports.GetReadSetCommand = GetReadSetCommand;
 exports.GetReadSetExportJobCommand = GetReadSetExportJobCommand;
@@ -2962,6 +3083,7 @@ exports.JobStatus = JobStatus;
 exports.ListAnnotationImportJobsCommand = ListAnnotationImportJobsCommand;
 exports.ListAnnotationStoreVersionsCommand = ListAnnotationStoreVersionsCommand;
 exports.ListAnnotationStoresCommand = ListAnnotationStoresCommand;
+exports.ListBatchCommand = ListBatchCommand;
 exports.ListMultipartReadSetUploadsCommand = ListMultipartReadSetUploadsCommand;
 exports.ListReadSetActivationJobsCommand = ListReadSetActivationJobsCommand;
 exports.ListReadSetExportJobsCommand = ListReadSetExportJobsCommand;
@@ -2975,6 +3097,7 @@ exports.ListRunCachesCommand = ListRunCachesCommand;
 exports.ListRunGroupsCommand = ListRunGroupsCommand;
 exports.ListRunTasksCommand = ListRunTasksCommand;
 exports.ListRunsCommand = ListRunsCommand;
+exports.ListRunsInBatchCommand = ListRunsInBatchCommand;
 exports.ListSequenceStoresCommand = ListSequenceStoresCommand;
 exports.ListSharesCommand = ListSharesCommand;
 exports.ListTagsForResourceCommand = ListTagsForResourceCommand;
@@ -3015,12 +3138,14 @@ exports.StartReadSetActivationJobCommand = StartReadSetActivationJobCommand;
 exports.StartReadSetExportJobCommand = StartReadSetExportJobCommand;
 exports.StartReadSetImportJobCommand = StartReadSetImportJobCommand;
 exports.StartReferenceImportJobCommand = StartReferenceImportJobCommand;
+exports.StartRunBatchCommand = StartRunBatchCommand;
 exports.StartRunCommand = StartRunCommand;
 exports.StartVariantImportJobCommand = StartVariantImportJobCommand;
 exports.StorageType = StorageType;
 exports.StoreFormat = StoreFormat;
 exports.StoreStatus = StoreStatus;
 exports.StoreType = StoreType;
+exports.SubmissionStatus = SubmissionStatus;
 exports.TagResourceCommand = TagResourceCommand;
 exports.TaskStatus = TaskStatus;
 exports.UntagResourceCommand = UntagResourceCommand;
@@ -3041,6 +3166,7 @@ exports.WorkflowType = WorkflowType;
 exports.paginateListAnnotationImportJobs = paginateListAnnotationImportJobs;
 exports.paginateListAnnotationStoreVersions = paginateListAnnotationStoreVersions;
 exports.paginateListAnnotationStores = paginateListAnnotationStores;
+exports.paginateListBatch = paginateListBatch;
 exports.paginateListMultipartReadSetUploads = paginateListMultipartReadSetUploads;
 exports.paginateListReadSetActivationJobs = paginateListReadSetActivationJobs;
 exports.paginateListReadSetExportJobs = paginateListReadSetExportJobs;
@@ -3054,6 +3180,7 @@ exports.paginateListRunCaches = paginateListRunCaches;
 exports.paginateListRunGroups = paginateListRunGroups;
 exports.paginateListRunTasks = paginateListRunTasks;
 exports.paginateListRuns = paginateListRuns;
+exports.paginateListRunsInBatch = paginateListRunsInBatch;
 exports.paginateListSequenceStores = paginateListSequenceStores;
 exports.paginateListShares = paginateListShares;
 exports.paginateListVariantImportJobs = paginateListVariantImportJobs;