@autonav/core 1.3.0 → 1.3.1

package/dist/adapter/claude-adapter.d.ts

@@ -5,7 +5,7 @@ import { PluginManager } from "../plugins/index.js";
  */
 export interface ClaudeAdapterOptions {
     /**
-     * Claude model to use (defaults to claude-sonnet-4-20250514)
+     * Claude model to use (defaults to claude-sonnet-4-5)
      */
     model?: string;
     /**
@@ -46,7 +46,7 @@ export interface QueryOptions {
  * @example
  * ```typescript
  * const adapter = new ClaudeAdapter({
- *   model: 'claude-sonnet-4-20250514',
+ *   model: 'claude-sonnet-4-5',
  *   maxTurns: 10
  * });
  *

package/dist/adapter/claude-adapter.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"claude-adapter.d.ts","sourceRoot":"","sources":["../../src/adapter/claude-adapter.ts"],"names":[],"mappings":"AAGA,OAAO,EACL,eAAe,EAEf,iBAAiB,EAKjB,KAAK,gBAAgB,EACtB,MAAM,8BAA8B,CAAC;AACtC,OAAO,EAAuB,aAAa,EAA0B,MAAM,qBAAqB,CAAC;AAiDjG;;GAEG;AACH,MAAM,WAAW,oBAAoB;IACnC;;OAEG;IACH,KAAK,CAAC,EAAE,MAAM,CAAC;IAEf;;OAEG;IACH,QAAQ,CAAC,EAAE,MAAM,CAAC;CACnB;AAED;;GAEG;AACH,MAAM,WAAW,eAAe;IAC9B,MAAM,EAAE,eAAe,CAAC;IACxB,YAAY,EAAE,MAAM,CAAC;IACrB,aAAa,EAAE,MAAM,CAAC;IACtB,iBAAiB,EAAE,MAAM,CAAC;IAC1B,aAAa,CAAC,EAAE,aAAa,CAAC;IAC9B,iBAAiB,CAAC,EAAE,MAAM,CAAC;CAC5B;AAED;;GAEG;AACH,MAAM,WAAW,YAAY;IAC3B;;OAEG;IACH,gBAAgB,CAAC,EAAE,OAAO,CAAC;IAE3B;;OAEG;IACH,QAAQ,CAAC,EAAE,MAAM,CAAC;CACnB;AAED;;;;;;;;;;;;;;;;GAgBG;AACH,qBAAa,aAAa;IACxB,OAAO,CAAC,QAAQ,CAAC,OAAO,CAAiC;IAEzD;;;;OAIG;gBACS,OAAO,GAAE,oBAAyB;IAO9C;;;;;;;;;;;;;;;;;OAiBG;IACG,aAAa,CAAC,aAAa,EAAE,MAAM,GAAG,OAAO,CAAC,eAAe,CAAC;IAmHpE;;;;;;;;;;;;;;;;;;;;OAoBG;IACG,KAAK,CACT,SAAS,EAAE,eAAe,EAC1B,QAAQ,EAAE,MAAM,EAChB,OAAO,GAAE,YAAiB,GACzB,OAAO,CAAC,iBAAiB,CAAC;IAwB7B;;;;;OAKG;YACW,YAAY;IAgM1B;;;;;;;;;;;;;;;;;;;;;OAqBG;IACG,MAAM,CACV,SAAS,EAAE,eAAe,EAC1B,OAAO,EAAE,MAAM,EACf,OAAO,GAAE,YAAiB,GACzB,OAAO,CAAC,MAAM,CAAC;IAgFlB;;;;;;;;;;;;OAYG;IACH,aAAa,CAAC,WAAW,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,GAAG,iBAAiB;IAoCpE;;;;;;;;;;;;;OAaG;IACH,QAAQ,CACN,QAAQ,EAAE,iBAAiB,EAC3B,iBAAiB,EAAE,MAAM,GACxB,gBAAgB;CAGpB"}

package/dist/adapter/claude-adapter.js

@@ -52,7 +52,7 @@ async function initializeLangSmith() {
  * @example
  * ```typescript
  * const adapter = new ClaudeAdapter({
- *   model: 'claude-sonnet-4-20250514',
+ *   model: 'claude-sonnet-4-5',
  *   maxTurns: 10
  * });
  *
@@ -69,7 +69,7 @@ export class ClaudeAdapter {
      */
     constructor(options = {}) {
         this.options = {
-            model: options.model || "claude-sonnet-4-20250514",
+            model: options.model || "claude-sonnet-4-5",
             maxTurns: options.maxTurns || 10,
         };
     }
@@ -239,6 +239,15 @@ export class ClaudeAdapter {
         if (enableSelfConfig && navigator.pluginsConfigPath) {
             mcpServers["autonav-self-config"] = createSelfConfigMcpServer(navigator.pluginManager, navigator.pluginsConfigPath);
         }
+        // Debug logging
+        const debug = process.env.AUTONAV_DEBUG === "1";
+        if (debug) {
+            console.error("\n[DEBUG] Query execution starting");
+            console.error(`[DEBUG] Model: ${this.options.model}`);
+            console.error(`[DEBUG] Max turns: ${maxTurns}`);
+            console.error(`[DEBUG] MCP servers registered: ${Object.keys(mcpServers).join(", ")}`);
+            console.error(`[DEBUG] System prompt length: ${systemPrompt.length} chars`);
+        }
         try {
             // Execute query using Claude Agent SDK
             // The SDK handles the agentic loop automatically
@@ -250,8 +259,6 @@ export class ClaudeAdapter {
                     systemPrompt,
                     cwd: navigator.navigatorPath,
                     mcpServers: Object.keys(mcpServers).length > 0 ? mcpServers : undefined,
-                    // Don't load user/project settings - we control everything
-                    settingSources: [],
                     // Allow the SDK to handle permissions
                     permissionMode: "bypassPermissions",
                 },
@@ -260,26 +267,46 @@ export class ClaudeAdapter {
             let resultMessage;
             let lastAssistantText = "";
             let submitAnswerInput;
+            let turnNumber = 0;
             for await (const message of queryIterator) {
+                // Debug log each message
+                if (debug && message.type === "assistant") {
+                    turnNumber++;
+                    console.error(`\n[DEBUG] Turn ${turnNumber}: Assistant message`);
+                }
                 // Log tool usage for debugging
                 if (message.type === "assistant") {
                     const content = message.message.content;
                     for (const block of content) {
                         if (block.type === "tool_use") {
+                            if (debug) {
+                                console.error(`[DEBUG] Tool called: ${block.name}`);
+                            }
                             // Check if this is the submit_answer tool
-                            if (block.name === SUBMIT_ANSWER_TOOL) {
+                            // Note: MCP SDK prefixes tool names with server name: "mcp__autonav-response__submit_answer"
+                            if (block.name === SUBMIT_ANSWER_TOOL || block.name.endsWith(`__${SUBMIT_ANSWER_TOOL}`)) {
                                 // Extract the structured response from tool input
                                 submitAnswerInput = block.input;
+                                if (debug) {
+                                    console.error("[DEBUG] submit_answer tool called successfully!");
+                                }
                             }
                         }
                         else if (block.type === "text") {
                             lastAssistantText = block.text;
+                            if (debug) {
+                                console.error(`[DEBUG] Text response: ${block.text.substring(0, 100)}...`);
+                            }
                         }
                     }
                 }
                 // Capture the result message
                 if (message.type === "result") {
                     resultMessage = message;
+                    if (debug) {
+                        console.error(`\n[DEBUG] Result: ${resultMessage.subtype}`);
+                        console.error(`[DEBUG] Total turns: ${turnNumber}`);
+                    }
                 }
             }
             // Check for errors
@@ -301,7 +328,8 @@ export class ClaudeAdapter {
                     answer: submitAnswerInput.answer,
                     sources: submitAnswerInput.sources,
                     confidence: submitAnswerInput.confidence,
-                    timestamp: new Date().toISOString(),
+                    confidenceReason: submitAnswerInput.confidenceReason,
+                    outOfDomain: submitAnswerInput.outOfDomain,
                 });
             }
             else {
@@ -390,8 +418,6 @@ Your task: ${message}`;
                     maxTurns,
                     systemPrompt,
                     cwd: navigator.navigatorPath,
-                    // Don't load user/project settings - we control everything
-                    settingSources: [],
                     // Allow file writes in the navigator directory
                     permissionMode: "bypassPermissions",
                 },

package/dist/adapter/claude-adapter.js.map

@@ -1 +1 @@
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package/dist/cli/autonav.js

@@ -38,6 +38,7 @@ Commands:
   query <path>      Query a navigator
   update <path>     Update a navigator's documentation
   chat <path>       Interactive conversation with a navigator
+  migrate <path>    Migrate a navigator to latest version
   install [path]    Symlink local skills to global location
   uninstall [path]  Remove global skill symlinks (preserves local)
 
@@ -52,6 +53,7 @@ Examples:
   autonav query ./my-navigator "How do I deploy?"
   autonav update ./my-navigator "I completed feature X. Please document this."
   autonav chat ./my-navigator
+  autonav migrate ./my-navigator
   autonav install ./my-navigator
   autonav uninstall ./my-navigator
 
@@ -60,6 +62,7 @@ For command-specific help:
   autonav query --help
   autonav update --help
   autonav chat --help
+  autonav migrate --help
   autonav install --help
   autonav uninstall --help
 `);
@@ -93,6 +96,9 @@ function main() {
         case "chat":
             scriptPath = path.join(__dirname, "nav-chat.js");
             break;
+        case "migrate":
+            scriptPath = path.join(__dirname, "nav-migrate.js");
+            break;
         case "install":
             scriptPath = path.join(__dirname, "nav-install.js");
             break;

package/dist/cli/autonav.js.map

@@ -1 +1 @@
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package/dist/cli/nav-migrate.d.ts

@@ -0,0 +1,16 @@
+#!/usr/bin/env node
+/**
+ * autonav migrate - Migrate navigators to latest version
+ *
+ * Brings existing navigators up to spec with latest best practices.
+ * Migrations are versioned, interactive, and safe.
+ *
+ * Usage:
+ *   autonav migrate <navigator-path> [options]
+ *
+ * Options:
+ *   --yes, -y     Auto-confirm all migrations (use with caution)
+ *   --dry-run     Show what would be migrated without making changes
+ */
+export {};
+//# sourceMappingURL=nav-migrate.d.ts.map

package/dist/cli/nav-migrate.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"nav-migrate.d.ts","sourceRoot":"","sources":["../../src/cli/nav-migrate.ts"],"names":[],"mappings":";AAEA;;;;;;;;;;;;GAYG"}

package/dist/cli/nav-migrate.js

@@ -0,0 +1,180 @@
+#!/usr/bin/env node
+/**
+ * autonav migrate - Migrate navigators to latest version
+ *
+ * Brings existing navigators up to spec with latest best practices.
+ * Migrations are versioned, interactive, and safe.
+ *
+ * Usage:
+ *   autonav migrate <navigator-path> [options]
+ *
+ * Options:
+ *   --yes, -y     Auto-confirm all migrations (use with caution)
+ *   --dry-run     Show what would be migrated without making changes
+ */
+import * as fs from "node:fs";
+import * as path from "node:path";
+import * as readline from "node:readline/promises";
+import { stdin as input, stdout as output } from "node:process";
+import { checkMigrations, applyMigration, getNavigatorVersion, } from "../migrations/index.js";
+function printUsage() {
+    console.log(`
+Usage: autonav migrate <navigator-path> [options]
+
+Migrate a navigator to the latest version.
+
+Options:
+  --yes, -y      Auto-confirm all migrations (use with caution)
+  --dry-run      Show what would be migrated without making changes
+  --help, -h     Show this help message
+
+Examples:
+  autonav migrate ~/my-navigator
+  autonav migrate ./platform-nav --dry-run
+  autonav migrate ~/my-nav --yes
+`);
+}
+/**
+ * Ask user for confirmation
+ */
+async function askConfirm(question) {
+    const rl = readline.createInterface({ input, output });
+    try {
+        const answer = await rl.question(`${question} [y/N] `);
+        return answer.toLowerCase() === "y" || answer.toLowerCase() === "yes";
+    }
+    finally {
+        rl.close();
+    }
+}
+/**
+ * Run a migration interactively
+ */
+async function runMigration(navPath, migration, options) {
+    console.log(`\n${migration.version} - ${migration.description}`);
+    // Create confirm function
+    const confirm = async (action, details) => {
+        if (options.dryRun) {
+            console.log(`  [DRY RUN] Would perform: ${action}`);
+            console.log(`  Details: ${details}`);
+            return false; // Don't actually apply in dry run
+        }
+        if (options.yes) {
+            console.log(`  ✓ Auto-confirmed: ${action}`);
+            return true;
+        }
+        console.log(`\n  ${action}`);
+        console.log(`  ${details}\n`);
+        return askConfirm("  Apply this change?");
+    };
+    // Apply migration
+    const result = await applyMigration(navPath, migration, confirm);
+    if (options.dryRun) {
+        console.log(`  [DRY RUN] Migration complete (no changes made)`);
+        return true;
+    }
+    if (result.success) {
+        console.log(`  ✓ ${result.message}`);
+        if (result.filesModified.length > 0) {
+            console.log(`  Modified: ${result.filesModified.join(", ")}`);
+        }
+        return true;
+    }
+    console.error(`  ❌ ${result.message}`);
+    if (result.errors && result.errors.length > 0) {
+        for (const error of result.errors) {
+            console.error(`     ${error}`);
+        }
+    }
+    return false;
+}
+async function main() {
+    const args = process.argv.slice(2);
+    // Handle help
+    if (args.includes("--help") || args.includes("-h")) {
+        printUsage();
+        process.exit(0);
+    }
+    // Parse options
+    const options = {
+        yes: args.includes("--yes") || args.includes("-y"),
+        dryRun: args.includes("--dry-run"),
+    };
+    // Get navigator path
+    const navPathArg = args.find((arg) => !arg.startsWith("-"));
+    if (!navPathArg) {
+        console.error("Error: Navigator path required\n");
+        printUsage();
+        process.exit(1);
+    }
+    const navPath = path.resolve(navPathArg);
+    // Validate navigator
+    if (!fs.existsSync(navPath)) {
+        console.error(`Error: Navigator not found: ${navPath}`);
+        process.exit(1);
+    }
+    const configPath = path.join(navPath, "config.json");
+    if (!fs.existsSync(configPath)) {
+        console.error(`Error: Not a valid navigator (missing config.json): ${navPath}`);
+        process.exit(1);
+    }
+    // Get current version
+    const currentVersion = getNavigatorVersion(navPath);
+    const navName = path.basename(navPath);
+    console.log(`\nChecking navigator: ${navName} ${currentVersion ? `(v${currentVersion})` : "(no version)"}`);
+    // Check what migrations are needed
+    const needed = await checkMigrations(navPath);
+    if (needed.length === 0) {
+        console.log("\n✓ Navigator is up to date, no migrations needed");
+        process.exit(0);
+    }
+    // Show migrations
+    console.log(`\nFound ${needed.length} migration(s) to apply:\n`);
+    for (let i = 0; i < needed.length; i++) {
+        const item = needed[i];
+        if (!item)
+            continue;
+        const { migration, check } = item;
+        console.log(`${i + 1}. v${migration.version} - ${migration.description}`);
+        console.log(`   ${check.reason}`);
+    }
+    if (options.dryRun) {
+        console.log("\n[DRY RUN MODE - No changes will be made]\n");
+    }
+    // Confirm proceeding
+    if (!options.yes && !options.dryRun) {
+        console.log();
+        const proceed = await askConfirm("Apply these migrations?");
+        if (!proceed) {
+            console.log("Migration cancelled");
+            process.exit(0);
+        }
+    }
+    // Apply migrations
+    let allSucceeded = true;
+    for (const { migration } of needed) {
+        const success = await runMigration(navPath, migration, options);
+        if (!success) {
+            allSucceeded = false;
+            break;
+        }
+    }
+    if (options.dryRun) {
+        console.log("\n[DRY RUN] No actual changes were made");
+        process.exit(0);
+    }
+    if (allSucceeded) {
+        const finalVersion = getNavigatorVersion(navPath);
+        console.log(`\n✓ Navigator updated to v${finalVersion}`);
+        process.exit(0);
+    }
+    else {
+        console.log("\n❌ Migration failed");
+        process.exit(1);
+    }
+}
+main().catch((error) => {
+    console.error("Fatal error:", error);
+    process.exit(1);
+});
+//# sourceMappingURL=nav-migrate.js.map

package/dist/cli/nav-migrate.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"nav-migrate.js","sourceRoot":"","sources":["../../src/cli/nav-migrate.ts"],"names":[],"mappings":";AAEA;;;;;;;;;;;;GAYG;AAEH,OAAO,KAAK,EAAE,MAAM,SAAS,CAAC;AAC9B,OAAO,KAAK,IAAI,MAAM,WAAW,CAAC;AAClC,OAAO,KAAK,QAAQ,MAAM,wBAAwB,CAAC;AACnD,OAAO,EAAE,KAAK,IAAI,KAAK,EAAE,MAAM,IAAI,MAAM,EAAE,MAAM,cAAc,CAAC;AAChE,OAAO,EACL,eAAe,EACf,cAAc,EACd,mBAAmB,GAEpB,MAAM,wBAAwB,CAAC;AAOhC,SAAS,UAAU;IACjB,OAAO,CAAC,GAAG,CAAC;;;;;;;;;;;;;;CAcb,CAAC,CAAC;AACH,CAAC;AAED;;GAEG;AACH,KAAK,UAAU,UAAU,CAAC,QAAgB;IACxC,MAAM,EAAE,GAAG,QAAQ,CAAC,eAAe,CAAC,EAAE,KAAK,EAAE,MAAM,EAAE,CAAC,CAAC;IACvD,IAAI,CAAC;QACH,MAAM,MAAM,GAAG,MAAM,EAAE,CAAC,QAAQ,CAAC,GAAG,QAAQ,SAAS,CAAC,CAAC;QACvD,OAAO,MAAM,CAAC,WAAW,EAAE,KAAK,GAAG,IAAI,MAAM,CAAC,WAAW,EAAE,KAAK,KAAK,CAAC;IACxE,CAAC;YAAS,CAAC;QACT,EAAE,CAAC,KAAK,EAAE,CAAC;IACb,CAAC;AACH,CAAC;AAED;;GAEG;AACH,KAAK,UAAU,YAAY,CACzB,OAAe,EACf,SAAoB,EACpB,OAAuB;IAEvB,OAAO,CAAC,GAAG,CAAC,KAAK,SAAS,CAAC,OAAO,MAAM,SAAS,CAAC,WAAW,EAAE,CAAC,CAAC;IAEjE,0BAA0B;IAC1B,MAAM,OAAO,GAAG,KAAK,EAAE,MAAc,EAAE,OAAe,EAAoB,EAAE;QAC1E,IAAI,OAAO,CAAC,MAAM,EAAE,CAAC;YACnB,OAAO,CAAC,GAAG,CAAC,8BAA8B,MAAM,EAAE,CAAC,CAAC;YACpD,OAAO,CAAC,GAAG,CAAC,cAAc,OAAO,EAAE,CAAC,CAAC;YACrC,OAAO,KAAK,CAAC,CAAC,kCAAkC;QAClD,CAAC;QAED,IAAI,OAAO,CAAC,GAAG,EAAE,CAAC;YAChB,OAAO,CAAC,GAAG,CAAC,uBAAuB,MAAM,EAAE,CAAC,CAAC;YAC7C,OAAO,IAAI,CAAC;QACd,CAAC;QAED,OAAO,CAAC,GAAG,CAAC,OAAO,MAAM,EAAE,CAAC,CAAC;QAC7B,OAAO,CAAC,GAAG,CAAC,KAAK,OAAO,IAAI,CAAC,CAAC;QAC9B,OAAO,UAAU,CAAC,sBAAsB,CAAC,CAAC;IAC5C,CAAC,CAAC;IAEF,kBAAkB;IAClB,MAAM,MAAM,GAAG,MAAM,cAAc,CAAC,OAAO,EAAE,SAAS,EAAE,OAAO,CAAC,CAAC;IAEjE,IAAI,OAAO,CAAC,MAAM,EAAE,CAAC;QACnB,OAAO,CAAC,GAAG,CAAC,kDAAkD,CAAC,CAAC;QAChE,OAAO,IAAI,CAAC;IACd,CAAC;IAED,IAAI,MAAM,CAAC,OAAO,EAAE,CAAC;QACnB,OAAO,CAAC,GAAG,CAAC,OAAO,MAAM,CAAC,OAAO,EAAE,CAAC,CAAC;QACrC,IAAI,MAAM,CAAC,aAAa,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;YACpC,OAAO,CAAC,GAAG,CAAC,eAAe,MAAM,CAAC,aAAa,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QAChE,CAAC;QACD,OAAO,IAAI,CAAC;IACd,CAAC;IAED,OAAO,CAAC,KAAK,CAAC,OAAO,MAAM,CAAC,OAAO,EAAE,CAAC,CAAC;IACvC,IAAI,MAAM,CAAC,MAAM,IAAI,MAAM,CAAC,MAAM,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;QAC9C,KAAK,MAAM,KAAK,IAAI,MAAM,CAAC,MAAM,EAAE,CAAC;YAClC,OAAO,CAAC,KAAK,CAAC,QAAQ,KAAK,EAAE,CAAC,CAAC;QACjC,CAAC;IACH,CAAC;IACD,OAAO,KAAK,CAAC;AACf,CAAC;AAED,KAAK,UAAU,IAAI;IACjB,MAAM,IAAI,GAAG,OAAO,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC;IAEnC,cAAc;IACd,IAAI,IAAI,CAAC,QAAQ,CAAC,QAAQ,CAAC,IAAI,IAAI,CAAC,QAAQ,CAAC,IAAI,CAAC,EAAE,CAAC;QACnD,UAAU,EAAE,CAAC;QACb,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;IAClB,CAAC;IAED,gBAAgB;IAChB,MAAM,OAAO,GAAmB;QAC9B,GAAG,EAAE,IAAI,CAAC,QAAQ,CAAC,OAAO,CAAC,IAAI,IAAI,CAAC,QAAQ,CAAC,IAAI,CAAC;QAClD,MAAM,EAAE,IAAI,CAAC,QAAQ,CAAC,WAAW,CAAC;KACnC,CAAC;IAEF,qBAAqB;IACrB,MAAM,UAAU,GAAG,IAAI,CAAC,IAAI,CAAC,CAAC,GAAG,EAAE,EAAE,CAAC,CAAC,GAAG,CAAC,UAAU,CAAC,GAAG,CAAC,CAAC,CAAC;IAC5D,IAAI,CAAC,UAAU,EAAE,CAAC;QAChB,OAAO,CAAC,KAAK,CAAC,kCAAkC,CAAC,CAAC;QAClD,UAAU,EAAE,CAAC;QACb,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;IAClB,CAAC;IAED,MAAM,OAAO,GAAG,IAAI,CAAC,OAAO,CAAC,UAAU,CAAC,CAAC;IAEzC,qBAAqB;IACrB,IAAI,CAAC,EAAE,CAAC,UAAU,CAAC,OAAO,CAAC,EAAE,CAAC;QAC5B,OAAO,CAAC,KAAK,CAAC,+BAA+B,OAAO,EAAE,CAAC,CAAC;QACxD,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;IAClB,CAAC;IAED,MAAM,UAAU,GAAG,IAAI,CAAC,IAAI,CAAC,OAAO,EAAE,aAAa,CAAC,CAAC;IACrD,IAAI,CAAC,EAAE,CAAC,UAAU,CAAC,UAAU,CAAC,EAAE,CAAC;QAC/B,OAAO,CAAC,KAAK,CAAC,uDAAuD,OAAO,EAAE,CAAC,CAAC;QAChF,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;IAClB,CAAC;IAED,sBAAsB;IACtB,MAAM,cAAc,GAAG,mBAAmB,CAAC,OAAO,CAAC,CAAC;IACpD,MAAM,OAAO,GAAG,IAAI,CAAC,QAAQ,CAAC,OAAO,CAAC,CAAC;IAEvC,OAAO,CAAC,GAAG,CAAC,yBAAyB,OAAO,IAAI,cAAc,CAAC,CAAC,CAAC,KAAK,cAAc,GAAG,CAAC,CAAC,CAAC,cAAc,EAAE,CAAC,CAAC;IAE5G,mCAAmC;IACnC,MAAM,MAAM,GAAG,MAAM,eAAe,CAAC,OAAO,CAAC,CAAC;IAE9C,IAAI,MAAM,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;QACxB,OAAO,CAAC,GAAG,CAAC,mDAAmD,CAAC,CAAC;QACjE,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;IAClB,CAAC;IAED,kBAAkB;IAClB,OAAO,CAAC,GAAG,CAAC,WAAW,MAAM,CAAC,MAAM,2BAA2B,CAAC,CAAC;IACjE,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,MAAM,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;QACvC,MAAM,IAAI,GAAG,MAAM,CAAC,CAAC,CAAC,CAAC;QACvB,IAAI,CAAC,IAAI;YAAE,SAAS;QACpB,MAAM,EAAE,SAAS,EAAE,KAAK,EAAE,GAAG,IAAI,CAAC;QAClC,OAAO,CAAC,GAAG,CAAC,GAAG,CAAC,GAAG,CAAC,MAAM,SAAS,CAAC,OAAO,MAAM,SAAS,CAAC,WAAW,EAAE,CAAC,CAAC;QAC1E,OAAO,CAAC,GAAG,CAAC,MAAM,KAAK,CAAC,MAAM,EAAE,CAAC,CAAC;IACpC,CAAC;IAED,IAAI,OAAO,CAAC,MAAM,EAAE,CAAC;QACnB,OAAO,CAAC,GAAG,CAAC,8CAA8C,CAAC,CAAC;IAC9D,CAAC;IAED,qBAAqB;IACrB,IAAI,CAAC,OAAO,CAAC,GAAG,IAAI,CAAC,OAAO,CAAC,MAAM,EAAE,CAAC;QACpC,OAAO,CAAC,GAAG,EAAE,CAAC;QACd,MAAM,OAAO,GAAG,MAAM,UAAU,CAAC,yBAAyB,CAAC,CAAC;QAC5D,IAAI,CAAC,OAAO,EAAE,CAAC;YACb,OAAO,CAAC,GAAG,CAAC,qBAAqB,CAAC,CAAC;YACnC,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;QAClB,CAAC;IACH,CAAC;IAED,mBAAmB;IACnB,IAAI,YAAY,GAAG,IAAI,CAAC;IACxB,KAAK,MAAM,EAAE,SAAS,EAAE,IAAI,MAAM,EAAE,CAAC;QACnC,MAAM,OAAO,GAAG,MAAM,YAAY,CAAC,OAAO,EAAE,SAAS,EAAE,OAAO,CAAC,CAAC;QAChE,IAAI,CAAC,OAAO,EAAE,CAAC;YACb,YAAY,GAAG,KAAK,CAAC;YACrB,MAAM;QACR,CAAC;IACH,CAAC;IAED,IAAI,OAAO,CAAC,MAAM,EAAE,CAAC;QACnB,OAAO,CAAC,GAAG,CA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package/dist/cli/nav-query.js

@@ -54,7 +54,7 @@ program
     .option("--no-color", "Disable colored output")
     .option("--validate", "Enable strict source validation (fail on missing sources)")
     .option("--confidence <level>", "Minimum acceptable confidence (high|medium|low)")
-    .option("--timeout <duration>", "Query timeout (e.g., 30s, 1m, 1m30s, or milliseconds)", parseDuration, 30000)
+    .option("--timeout <duration>", "Query timeout (e.g., 30s, 1m, 1m30s, or milliseconds)", parseDuration, 300000)
     .option("--verbose", "Show additional debug information")
     .action(async (navigator, question, options) => {
     await executeQuery(navigator, question, options);

package/dist/cli/nav-query.js.map

@@ -1 +1 @@
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package/dist/interview/prompts.d.ts

@@ -17,7 +17,7 @@ export declare function getInterviewSystemPrompt(packContext?: PackContext, anal
 /**
  * Legacy export for backwards compatibility
  */
-export declare const INTERVIEW_SYSTEM_PROMPT = "You are helping create a new Autonav navigator - a self-organizing knowledge assistant.\n\n## Your Role\nGuide the user through understanding their needs so you can create a well-configured navigator. Ask questions naturally, one at a time. Listen carefully and ask follow-up questions when needed.\n\n## Key Topics to Explore\n\n1. **Purpose**: What is this navigator for? What problems will it solve?\n2. **Scope**: What topics should it know about? What's explicitly out of scope?\n3. **Knowledge Structure**: How should knowledge be organized? (by topic, project, chronologically, as a journal, etc.)\n4. **Knowledge Sources**: What documentation will be added? How should new knowledge be captured over time?\n5. **Audience**: Who will use this? How should it communicate? (formal, casual, technical depth)\n6. **Autonomy**: How autonomous should it be? Should it create/modify files freely, or ask first?\n\n## Philosophy\nNavs are \"self-organizing notebooks that talk back\" - they edit their own knowledge files, learn from conversations, and maintain their own context. Help the user think through how they want this self-organization to work.\n\n## Interview Flow\n\n### Phase 1: Information Gathering (Exchanges 1-4)\n- Ask ONE question at a time\n- Be conversational and helpful\n- Ask follow-up questions when answers are vague\n- Focus on understanding their needs\n\n### Phase 2: Signal Readiness (After 4-6 exchanges)\nOnce you have gathered enough information to create a basic navigator configuration, signal that you're ready by saying something like:\n\n\"I have enough information to create your navigator. Type 'done' when you're ready, or we can continue refining if you have more details to share.\"\n\n**IMPORTANT**: After signaling readiness, DO NOT generate the JSON configuration yet. Wait for the user to explicitly type 'done', 'finish', 'ready', or similar. Continue answering any additional questions they have.\n\n### Phase 3: Configuration Generation (User types 'done')\nOnly generate the configuration when the user explicitly indicates they're ready.\n\n## When Creating the Navigator\nAfter the user types 'done' (or similar), output a JSON configuration block wrapped in ```json and ``` markers.\n\n**CRITICAL**: Output ONLY the JSON block and NOTHING ELSE. Do NOT add explanatory text before or after the JSON. The JSON itself IS your final response.\n\nThe JSON must include:\n\n```json\n{\n  \"purpose\": \"One-sentence description of what this navigator is for\",\n  \"scope\": \"Topics in scope and explicitly out of scope\",\n  \"knowledgeStructure\": \"How knowledge should be organized (by topic, chronologically, by project, etc.)\",\n  \"audience\": \"Who uses this navigator and how it should communicate\",\n  \"autonomy\": \"Autonomy level - can it create files freely or should it ask first\",\n  \"claudeMd\": \"The complete CLAUDE.md content as a string with proper newlines (\\n)\",\n  \"suggestedDirectories\": [\"optional\", \"array\", \"of\", \"subdirectories\"]\n}\n```\n\n**IMPORTANT**: After outputting the JSON block, your job is complete. Do NOT add any commentary, instructions, or ask for further confirmation. The system will automatically use this configuration to create the navigator.\n\nThe claudeMd field should be a complete, personalized CLAUDE.md file based on what you learned, including:\n- Clear purpose statement\n- Grounding rules (always cite, never invent, acknowledge uncertainty)\n- Domain-specific scope definition\n- Knowledge organization guidance\n- Response format expectations\n- Self-organization rules based on their autonomy preference\n\n## Critical Rules\n1. Ask questions conversationally until you have enough information (4-6 exchanges typically)\n2. Signal readiness explicitly but DO NOT auto-generate configuration\n3. Wait for user's explicit 'done' command before generating JSON\n4. Never simulate user responses or create multi-turn conversations alone";
+export declare const INTERVIEW_SYSTEM_PROMPT = "You are helping create a new Autonav navigator - a self-organizing knowledge assistant.\n\n## Your Role\nGuide the user through understanding their needs so you can create a well-configured navigator. Ask questions naturally, one at a time. Listen carefully and ask follow-up questions when needed.\n\n## Key Topics to Explore\n\n1. **Purpose**: What is this navigator for? What problems will it solve?\n2. **Scope**: What topics should it know about? What's explicitly out of scope?\n3. **Knowledge Structure**: How should knowledge be organized? (by topic, project, chronologically, as a journal, etc.)\n4. **Knowledge Sources**: What documentation will be added? How should new knowledge be captured over time?\n5. **Audience**: Who will use this? How should it communicate? (formal, casual, technical depth)\n6. **Autonomy**: How autonomous should it be? Should it create/modify files freely, or ask first?\n\n## Philosophy\nNavs are \"self-organizing notebooks that talk back\" - they edit their own knowledge files, learn from conversations, and maintain their own context. Help the user think through how they want this self-organization to work.\n\n## Interview Flow\n\n### Phase 1: Information Gathering (Exchanges 1-4)\n- Ask ONE question at a time\n- Be conversational and helpful\n- Ask follow-up questions when answers are vague\n- Focus on understanding their needs\n\n### Phase 2: Signal Readiness (After 4-6 exchanges)\nOnce you have gathered enough information to create a basic navigator configuration, signal that you're ready by saying something like:\n\n\"I have enough information to create your navigator. Type 'done' when you're ready, or we can continue refining if you have more details to share.\"\n\n**IMPORTANT**: After signaling readiness, DO NOT generate the JSON configuration yet. Wait for the user to explicitly type 'done', 'finish', 'ready', or similar. Continue answering any additional questions they have.\n\n### Phase 3: Configuration Generation (User types 'done')\nOnly generate the configuration when the user explicitly indicates they're ready.\n\n## When Creating the Navigator\nAfter the user types 'done' (or similar), output a JSON configuration block wrapped in ```json and ``` markers.\n\n**CRITICAL**: Output ONLY the JSON block and NOTHING ELSE. Do NOT add explanatory text before or after the JSON. The JSON itself IS your final response.\n\nThe JSON must include:\n\n```json\n{\n  \"purpose\": \"One-sentence description of what this navigator is for\",\n  \"scope\": \"Topics in scope and explicitly out of scope\",\n  \"knowledgeStructure\": \"How knowledge should be organized (by topic, chronologically, by project, etc.)\",\n  \"audience\": \"Who uses this navigator and how it should communicate\",\n  \"autonomy\": \"Autonomy level - can it create files freely or should it ask first\",\n  \"claudeMd\": \"The complete CLAUDE.md content as a string with proper newlines (\\n)\",\n  \"suggestedDirectories\": [\"optional\", \"array\", \"of\", \"subdirectories\"]\n}\n```\n\n**IMPORTANT**: After outputting the JSON block, your job is complete. Do NOT add any commentary, instructions, or ask for further confirmation. The system will automatically use this configuration to create the navigator.\n\nThe claudeMd field should be a complete, personalized CLAUDE.md file based on what you learned, including:\n- Clear purpose statement\n- Grounding rules (always cite, never invent, acknowledge uncertainty)\n- Domain-specific scope definition\n- Knowledge organization guidance\n- Response format expectations (MUST use submit_answer tool, NOT plain text/JSON)\n- Self-organization rules based on their autonomy preference\n\n**CRITICAL**: The CLAUDE.md MUST include a \"Response Format\" section instructing the navigator to use the submit_answer tool for all responses. Never instruct navigators to output raw JSON - they must always use the submit_answer tool with answer, sources, and confidence parameters.\n\n## Critical Rules\n1. Ask questions conversationally until you have enough information (4-6 exchanges typically)\n2. Signal readiness explicitly but DO NOT auto-generate configuration\n3. Wait for user's explicit 'done' command before generating JSON\n4. Never simulate user responses or create multi-turn conversations alone";
 /**
  * Type for the navigator configuration from the interview
  */

package/dist/interview/prompts.d.ts.map

@@ -1 +1 @@
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package/dist/interview/prompts.js

@@ -65,9 +65,11 @@ The claudeMd field should be a complete, personalized CLAUDE.md file based on wh
 - Grounding rules (always cite, never invent, acknowledge uncertainty)
 - Domain-specific scope definition
 - Knowledge organization guidance
-- Response format expectations
+- Response format expectations (MUST use submit_answer tool, NOT plain text/JSON)
 - Self-organization rules based on their autonomy preference
 
+**CRITICAL**: The CLAUDE.md MUST include a "Response Format" section instructing the navigator to use the submit_answer tool for all responses. Never instruct navigators to output raw JSON - they must always use the submit_answer tool with answer, sources, and confidence parameters.
+
 ## Critical Rules
 1. Ask questions conversationally until you have enough information (4-6 exchanges typically)
 2. Signal readiness explicitly but DO NOT auto-generate configuration

package/dist/interview/prompts.js.map

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package/dist/migrations/index.d.ts

@@ -0,0 +1,38 @@
+/**
+ * Migration system
+ *
+ * Manages versioned migrations that bring navigators up to spec with
+ * latest best practices.
+ */
+import type { Migration, MigrationCheck, MigrationResult } from "./types.js";
+/**
+ * Get the current version of a navigator
+ */
+export declare function getNavigatorVersion(navPath: string): string | null;
+/**
+ * Check which migrations are needed for a navigator
+ */
+export declare function checkMigrations(navPath: string): Promise<Array<{
+    migration: Migration;
+    check: MigrationCheck;
+}>>;
+/**
+ * Apply a specific migration to a navigator
+ */
+export declare function applyMigration(navPath: string, migration: Migration, confirm: (action: string, details: string) => Promise<boolean>): Promise<MigrationResult>;
+/**
+ * Apply all needed migrations to a navigator
+ */
+export declare function applyAllMigrations(navPath: string, confirm: (action: string, details: string) => Promise<boolean>): Promise<{
+    results: Array<{
+        migration: Migration;
+        result: MigrationResult;
+    }>;
+    success: boolean;
+}>;
+/**
+ * Get all available migrations
+ */
+export declare function getAllMigrations(): Migration[];
+export type { Migration, MigrationCheck, MigrationResult, ConfirmFn } from "./types.js";
+//# sourceMappingURL=index.d.ts.map

package/dist/migrations/index.d.ts.map

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