@autonav/core 1.1.5 → 1.3.1

package/dist/migrations/versions/v1.3.1-submit-answer.js

@@ -0,0 +1,230 @@
+/**
+ * Migration v1.3.1: Add submit_answer Tool Instructions
+ *
+ * This migration updates CLAUDE.md to use the submit_answer tool instead of
+ * raw JSON output. The query command expects navigators to call submit_answer
+ * to terminate the agent loop, but older templates instructed raw JSON output.
+ *
+ * Changes:
+ * - Replaces "Response Format" section with submit_answer tool instructions
+ * - Updates examples to show tool calls instead of JSON blocks
+ */
+import * as fs from "node:fs";
+import * as path from "node:path";
+const MIGRATION_VERSION = "1.3.1";
+/**
+ * The new Response Format section that uses submit_answer tool
+ */
+const NEW_RESPONSE_FORMAT_SECTION = `## Response Format
+
+You MUST use the \`submit_answer\` tool to submit your answers. Do NOT respond with plain text or JSON in your message.
+
+The submit_answer tool requires:
+- \`answer\`: Your complete answer with inline citations
+- \`sources\`: Array of sources with file, section, and relevance
+- \`confidence\`: Level - 'high', 'medium', or 'low' (not a number)
+- \`confidenceReason\`: Explanation of why this confidence level (min 10 chars)
+- \`outOfDomain\`: Boolean - is question outside navigator's domain?
+
+Example tool call:
+\`\`\`typescript
+submit_answer({
+  answer: "To configure SSL, update the load balancer settings as described in deployment/ssl-config.md. Set the certificate_arn parameter in the aws_lb_listener resource.",
+  sources: [
+    {
+      file: "deployment/ssl-config.md",
+      section: "SSL Configuration",
+      relevance: "Explains certificate setup and Terraform configuration"
+    }
+  ],
+  confidence: 'high',
+  confidenceReason: "Direct answer from clear source with specific configuration steps",
+  outOfDomain: false
+})
+\`\`\`
+
+## Good Response Example
+
+**Question**: "How do I configure SSL?"
+
+**Process**:
+1. Search knowledge base for SSL configuration
+2. Read relevant files
+3. Call submit_answer tool with findings
+
+**Tool Call**:
+\`\`\`typescript
+submit_answer({
+  answer: "To configure SSL, you need to update the load balancer settings. According to deployment/ssl-config.md, you should set the certificate ARN in the Terraform configuration.",
+  sources: [
+    {
+      file: "deployment/ssl-config.md",
+      section: "SSL Configuration",
+      relevance: "Provides step-by-step SSL certificate setup instructions"
+    }
+  ],
+  confidence: 'high',
+  confidenceReason: "Information directly stated in dedicated SSL configuration section with step-by-step instructions",
+  outOfDomain: false
+})
+\`\`\`
+
+## Bad Response Example (Don't do this)
+
+**Question**: "How do I configure SSL?"
+
+**Wrong approach**:
+- Responding with plain text instead of using submit_answer tool
+- Not citing specific sources
+- Inventing file paths that don't exist
+
+**Problems**:
+- No submit_answer tool call
+- Vague answer without specifics
+- Claims knowledge without evidence`;
+/**
+ * Detect if CLAUDE.md has the old JSON response format
+ */
+function hasOldResponseFormat(claudeMdContent) {
+    // Look for the old JSON schema format markers
+    const hasOldJsonSchema = claudeMdContent.includes('"protocolVersion":') ||
+        claudeMdContent.includes('Always structure your responses as JSON');
+    const hasSubmitAnswerTool = claudeMdContent.includes('submit_answer');
+    // If it has the old JSON format but not the submit_answer tool, it needs migration
+    return hasOldJsonSchema && !hasSubmitAnswerTool;
+}
+/**
+ * Extract the section between two headers in markdown
+ */
+function extractSection(content, startHeader, endHeader) {
+    const lines = content.split('\n');
+    let startIndex = -1;
+    let endIndex = lines.length;
+    // Find start
+    for (let i = 0; i < lines.length; i++) {
+        const line = lines[i];
+        if (line && line.trim() === startHeader) {
+            startIndex = i;
+            break;
+        }
+    }
+    if (startIndex === -1) {
+        return null;
+    }
+    // Find end (next header of same or higher level, or specified header)
+    if (endHeader) {
+        for (let i = startIndex + 1; i < lines.length; i++) {
+            const line = lines[i];
+            if (line && line.trim() === endHeader) {
+                endIndex = i;
+                break;
+            }
+        }
+    }
+    else {
+        // Find next header of same or higher level
+        const startHeaderLevel = startHeader.match(/^#+/)?.[0].length || 2;
+        for (let i = startIndex + 1; i < lines.length; i++) {
+            const line = lines[i];
+            if (!line)
+                continue;
+            const headerMatch = line.match(/^(#+)\s/);
+            if (headerMatch && headerMatch[1] && headerMatch[1].length <= startHeaderLevel) {
+                endIndex = i;
+                break;
+            }
+        }
+    }
+    const sectionContent = lines.slice(startIndex, endIndex).join('\n');
+    const startPos = lines.slice(0, startIndex).join('\n').length + (startIndex > 0 ? 1 : 0);
+    const endPos = lines.slice(0, endIndex).join('\n').length + (endIndex > 0 ? 1 : 0);
+    return { content: sectionContent, startPos, endPos };
+}
+/**
+ * Check if this migration is needed
+ */
+async function check(navPath) {
+    const claudeMdPath = path.join(navPath, "CLAUDE.md");
+    if (!fs.existsSync(claudeMdPath)) {
+        return {
+            needed: false,
+            reason: "No CLAUDE.md file found",
+        };
+    }
+    const content = fs.readFileSync(claudeMdPath, "utf-8");
+    if (!hasOldResponseFormat(content)) {
+        return {
+            needed: false,
+            reason: "CLAUDE.md already uses submit_answer tool or doesn't have old format",
+        };
+    }
+    return {
+        needed: true,
+        reason: "CLAUDE.md uses old JSON response format instead of submit_answer tool",
+    };
+}
+/**
+ * Apply the migration
+ */
+async function apply(navPath, confirm) {
+    const claudeMdPath = path.join(navPath, "CLAUDE.md");
+    const filesModified = [];
+    try {
+        const content = fs.readFileSync(claudeMdPath, "utf-8");
+        // Find the old Response Format section
+        const section = extractSection(content, "## Response Format");
+        if (!section) {
+            return {
+                success: false,
+                message: "Could not find '## Response Format' section in CLAUDE.md",
+                filesModified,
+                errors: ["Missing '## Response Format' section"],
+            };
+        }
+        // Ask for confirmation
+        const confirmed = await confirm("Replace Response Format section in CLAUDE.md", `This will replace the old JSON output format with submit_answer tool instructions.\n\nOld section (${section.content.split('\n').length} lines) will be replaced with the new tool-based format.`);
+        if (!confirmed) {
+            return {
+                success: false,
+                message: "Migration cancelled by user",
+                filesModified,
+            };
+        }
+        // Replace the section (TypeScript knows section is not null here)
+        const newContent = content.substring(0, section.startPos) +
+            NEW_RESPONSE_FORMAT_SECTION +
+            content.substring(section.endPos);
+        // Write the updated content
+        fs.writeFileSync(claudeMdPath, newContent, "utf-8");
+        filesModified.push("CLAUDE.md");
+        // Update config.json version if it exists
+        const configPath = path.join(navPath, "config.json");
+        if (fs.existsSync(configPath)) {
+            const config = JSON.parse(fs.readFileSync(configPath, "utf-8"));
+            config.version = MIGRATION_VERSION;
+            fs.writeFileSync(configPath, JSON.stringify(config, null, 2) + "\n", "utf-8");
+            filesModified.push("config.json");
+        }
+        return {
+            success: true,
+            message: `Successfully updated to v${MIGRATION_VERSION}`,
+            filesModified,
+        };
+    }
+    catch (error) {
+        const errorMsg = error instanceof Error ? error.message : String(error);
+        return {
+            success: false,
+            message: `Migration failed: ${errorMsg}`,
+            filesModified,
+            errors: [errorMsg],
+        };
+    }
+}
+export const migration = {
+    version: MIGRATION_VERSION,
+    description: "Add submit_answer tool instructions to CLAUDE.md",
+    check,
+    apply,
+};
+//# sourceMappingURL=v1.3.1-submit-answer.js.map

package/dist/migrations/versions/v1.3.1-submit-answer.js.map

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package/dist/skill-generator/index.js

@@ -99,6 +99,15 @@ ${config.description}
 ${config.scope ? `**Scope**: ${config.scope}\n` : ""}
 ${config.audience ? `**Audience**: ${config.audience}\n` : ""}
 
+## Identity Protocol
+
+When querying this navigator, Claude Code should explicitly identify itself as the requester. This enables bidirectional identity affirmation and helps the navigator maintain context awareness.
+
+**Example**:
+\`\`\`bash
+autonav query "${navPath}" "Claude Code here, asking: How do I deploy?"
+\`\`\`
+
 ## How to Use
 
 Simply use \`autonav query\` to ask questions:

package/dist/skill-generator/index.js.map

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package/dist/templates/CLAUDE-pack.md.template

@@ -21,6 +21,11 @@ When answering questions:
 
 Always structure responses with proper source citations as specified in `system-configuration.md`.
 
+**IMPORTANT**: When citing sources in the `submit_answer` tool:
+- Use ONLY the filename (e.g., "planting.md"), NOT the full path (NOT "knowledge/planting.md")
+- The knowledge base directory is already known to be `knowledge/`
+- Example: `file: "planting.md"` ✓   NOT `file: "knowledge/planting.md"` ✗
+
 Include:
 - Direct answer
 - File path references: [filename.md: Section Heading]
@@ -29,4 +34,11 @@ Include:
 
 ## Response Format
 
-Follow the response format guidelines in `system-configuration.md`. Always use structured JSON responses following the NavigatorResponse schema.
+**CRITICAL**: You MUST use the `submit_answer` tool to submit your responses. Do NOT output plain text or JSON.
+
+The `system-configuration.md` file provides detailed response guidelines. The key requirement is:
+- Use the `submit_answer` tool with `answer`, `sources`, and `confidence` parameters
+- Never output raw JSON or plain text as your response
+- The submit_answer tool call terminates the agent loop
+
+See `system-configuration.md` for detailed examples and confidence scoring guidelines.

package/dist/templates/CLAUDE.md.template

@@ -52,60 +52,63 @@ You MUST follow these rules when answering questions:
 
 ## Response Format
 
-Always structure your responses as JSON following the NavigatorResponse schema:
-
-```json
-{
-  "protocolVersion": "1.0.0",
-  "query": "the question asked",
-  "answer": "your detailed answer with inline citations",
-  "sources": [
+You MUST use the `submit_answer` tool to submit your answers. Do NOT respond with plain text or JSON in your message.
+
+The submit_answer tool requires:
+- `answer`: Your complete answer with inline citations
+- `sources`: Array of sources with file, section, and relevance
+- `confidence`: Score from 0 to 1 (0.8+ for well-grounded, 0.5-0.8 for partial, <0.5 if uncertain)
+
+Example tool call:
+```typescript
+submit_answer({
+  answer: "To configure SSL, update the load balancer settings as described in deployment/ssl-config.md. Set the certificate_arn parameter in the aws_lb_listener resource.",
+  sources: [
     {
-      "filePath": "relative/path/from/knowledge-base/file.md",
-      "excerpt": "exact quote from the file",
-      "section": "section heading"
+      file: "deployment/ssl-config.md",
+      section: "SSL Configuration",
+      relevance: "Explains certificate setup and Terraform configuration"
     }
   ],
-  "confidence": 0.95
-}
+  confidence: 0.95
+})
 ```
 
-## Example: Good Response
+## Good Response Example
 
 **Question**: "How do I configure SSL?"
 
-```json
-{
-  "protocolVersion": "1.0.0",
-  "query": "How do I configure SSL?",
-  "answer": "To configure SSL, you need to update the load balancer settings. According to deployment/ssl-config.md, you should set the certificate ARN in the Terraform configuration.",
-  "sources": [
+**Process**:
+1. Search knowledge base for SSL configuration
+2. Read relevant files
+3. Call submit_answer tool with findings
+
+**Tool Call**:
+```typescript
+submit_answer({
+  answer: "To configure SSL, you need to update the load balancer settings. According to deployment/ssl-config.md, you should set the certificate ARN in the Terraform configuration.",
+  sources: [
     {
-      "filePath": "deployment/ssl-config.md",
-      "excerpt": "Set the certificate_arn parameter in the aws_lb_listener resource",
-      "section": "SSL Configuration"
+      file: "deployment/ssl-config.md",
+      section: "SSL Configuration",
+      relevance: "Provides step-by-step SSL certificate setup instructions"
     }
   ],
-  "confidence": 0.95
-}
+  confidence: 0.95
+})
 ```
 
-## Example: Bad Response (Don't do this)
+## Bad Response Example (Don't do this)
 
 **Question**: "How do I configure SSL?"
 
-```json
-{
-  "query": "How do I configure SSL?",
-  "answer": "You can configure SSL by updating the config.yaml file and setting ssl_enabled to true.",
-  "sources": [],
-  "confidence": 0.8
-}
-```
+**Wrong approach**:
+- Responding with plain text instead of using submit_answer tool
+- Not citing specific sources
+- Inventing file paths that don't exist
 
 **Problems**:
-- No sources cited
-- File path (config.yaml) may not exist
+- No submit_answer tool call
 - Vague answer without specifics
 - Claims knowledge without evidence
 

package/dist/templates/system-configuration.md.template

@@ -35,22 +35,26 @@ For every answer, include:
 
 ## Response Structure
 
-Always respond with JSON following this structure:
-
-```json
-{
-  "protocolVersion": "0.1.0",
-  "query": "the question asked",
-  "answer": "detailed answer with inline citations",
-  "sources": [
+You MUST use the `submit_answer` tool to submit your responses. Do NOT output plain text or JSON.
+
+The submit_answer tool accepts:
+- `answer`: Your detailed answer with inline citations
+- `sources`: Array with file, section, and relevance for each source
+- `confidence`: Score from 0.0 to 1.0
+
+Example:
+```typescript
+submit_answer({
+  answer: "detailed answer with inline citations",
+  sources: [
     {
-      "filePath": "relative/path/from/knowledge/file.md",
-      "excerpt": "exact quote from the file",
-      "section": "section heading"
+      file: "relative/path/from/knowledge/file.md",
+      section: "section heading",
+      relevance: "why this source is relevant"
     }
   ],
-  "confidence": 0.95
-}
+  confidence: 0.95
+})
 ```
 
 ## Confidence Scoring

package/dist/tools/response.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"response.d.ts","sourceRoot":"","sources":["../../src/tools/response.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AASH;;GAEG;AACH,MAAM,WAAW,kBAAkB;IACjC,OAAO,EAAE,OAAO,CAAC;IACjB,OAAO,EAAE,MAAM,CAAC;CACjB;AAED;;;;;;;GAOG;AACH,wBAAgB,uBAAuB,4EAgEtC;AAED;;GAEG;AACH,eAAO,MAAM,kBAAkB,kBAAkB,CAAC"}

package/dist/tools/response.js

@@ -28,8 +28,10 @@ Do NOT respond with plain text - always use this tool to submit your answer.`, {
             file: z.string().min(1).describe("Filename from knowledge base (relative path)"),
             section: z.string().min(1).describe("Specific section or heading in the file"),
             relevance: z.string().min(1).describe("Brief explanation of why this source supports the answer"),
-        })).min(1).describe("List of sources from the knowledge base that support your answer. Must include at least one source."),
-        confidence: z.number().min(0).max(1).describe("Confidence score from 0 to 1. Use 0.8-1.0 for well-grounded answers with multiple sources, 0.5-0.8 for partially supported answers, below 0.5 if uncertain."),
+        })).describe("List of sources from the knowledge base that support your answer. Can be empty array if explicitly stating lack of information."),
+        confidence: z.enum(['high', 'medium', 'low']).describe("Confidence level: 'high' for direct answers from clear sources, 'medium' for synthesized answers, 'low' for inferred or uncertain answers."),
+        confidenceReason: z.string().min(10).describe("Explanation of why you chose this confidence level. Justify your rating based on source quality and directness."),
+        outOfDomain: z.boolean().describe("Is this question outside the navigator's domain? Set to true only if the question clearly falls outside the knowledge base scope."),
     }, async (args) => {
         // Validate against the full schema (adds protocolVersion, timestamp, etc.)
         const response = NavigatorResponseSchema.parse({
@@ -38,7 +40,8 @@ Do NOT respond with plain text - always use this tool to submit your answer.`, {
             answer: args.answer,
             sources: args.sources,
             confidence: args.confidence,
-            timestamp: new Date().toISOString(),
+            confidenceReason: args.confidenceReason,
+            outOfDomain: args.outOfDomain,
         });
         // Return success - the ClaudeAdapter will extract the response
         return {

package/dist/tools/response.js.map

@@ -1 +1 @@
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+{"version":3,"file":"response.js","sourceRoot":"","sources":["../../src/tools/response.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAEH,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AACxB,OAAO,EAAE,IAAI,EAAE,kBAAkB,EAAE,MAAM,gCAAgC,CAAC;AAC1E,OAAO,EACL,uBAAuB,EACvB,gBAAgB,GACjB,MAAM,8BAA8B,CAAC;AAUtC;;;;;;;GAOG;AACH,MAAM,UAAU,uBAAuB;IACrC,MAAM,gBAAgB,GAAG,IAAI,CAC3B,eAAe,EACf;;;6EAGyE,EACzE;QACE,MAAM,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,QAAQ,CAChC,uIAAuI,CACxI;QACD,OAAO,EAAE,CAAC,CAAC,KAAK,CACd,CAAC,CAAC,MAAM,CAAC;YACP,IAAI,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,QAAQ,CAAC,8CAA8C,CAAC;YAChF,OAAO,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,QAAQ,CAAC,yCAAyC,CAAC;YAC9E,SAAS,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,QAAQ,CAAC,0DAA0D,CAAC;SAClG,CAAC,CACH,CAAC,QAAQ,CACR,iIAAiI,CAClI;QACD,UAAU,EAAE,CAAC,CAAC,IAAI,CAAC,CAAC,MAAM,EAAE,QAAQ,EAAE,KAAK,CAAC,CAAC,CAAC,QAAQ,CACpD,4IAA4I,CAC7I;QACD,gBAAgB,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC,QAAQ,CAC3C,iHAAiH,CAClH;QACD,WAAW,EAAE,CAAC,CAAC,OAAO,EAAE,CAAC,QAAQ,CAC/B,mIAAmI,CACpI;KACF,EACD,KAAK,EAAE,IAAI,EAAE,EAAE;QACb,2EAA2E;QAC3E,MAAM,QAAQ,GAAG,uBAAuB,CAAC,KAAK,CAAC;YAC7C,eAAe,EAAE,gBAAgB;YACjC,KAAK,EAAE,EAAE,EAAE,qCAAqC;YAChD,MAAM,EAAE,IAAI,CAAC,MAAM;YACnB,OAAO,EAAE,IAAI,CAAC,OAAO;YACrB,UAAU,EAAE,IAAI,CAAC,UAAU;YAC3B,gBAAgB,EAAE,IAAI,CAAC,gBAAgB;YACvC,WAAW,EAAE,IAAI,CAAC,WAAW;SAC9B,CAAC,CAAC;QAEH,+DAA+D;QAC/D,OAAO;YACL,OAAO,EAAE;gBACP;oBACE,IAAI,EAAE,MAAe;oBACrB,IAAI,EAAE,IAAI,CAAC,SAAS,CAAC;wBACnB,OAAO,EAAE,IAAI;wBACb,OAAO,EAAE,+BAA+B;wBACxC,QAAQ;qBACT,CAAC;iBACH;aACF;YACD,OAAO,EAAE,KAAK;SACf,CAAC;IACJ,CAAC,CACF,CAAC;IAEF,OAAO,kBAAkB,CAAC;QACxB,IAAI,EAAE,kBAAkB;QACxB,OAAO,EAAE,OAAO;QAChB,KAAK,EAAE,CAAC,gBAAgB,CAAC;KAC1B,CAAC,CAAC;AACL,CAAC;AAED;;GAEG;AACH,MAAM,CAAC,MAAM,kBAAkB,GAAG,eAAe,CAAC"}

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@autonav/core",
-  "version": "1.1.5",
+  "version": "1.3.1",
   "description": "CLI tools and Claude SDK Adapter for Autonav navigators",
   "type": "module",
   "main": "./dist/index.js",
@@ -19,7 +19,8 @@
     "dev": "tsc --watch",
     "test": "vitest run",
     "test:watch": "vitest",
-    "typecheck": "tsc --noEmit"
+    "typecheck": "tsc --noEmit",
+    "test:indicator": "npm run build && node dist/interview/ui/test-indicator.js"
   },
   "keywords": [
     "autonav",