@autodidacticon/orchestrator 0.2.0 → 0.3.1

package/README.md

@@ -1,6 +1,6 @@
 # orchestrator
 
-An orchestrator that runs many coding agents in parallel from a dependency graph of tasks against one repository. Dependencies gate admission. Each agent works in its own git worktree and reports through a local API. Humans resolve blockers and review milestones. A task is done only after its sealed work has been rebased, checked, and published to the integration branch. The orchestrator itself is a static TypeScript daemon with named hook points for model-backed judgment, designed to converge to the same outcome after a crash at any point. Task graphs are imported from Linear or Jira through the session's own tracker connector, and progress is mirrored back to the tracker.
+An orchestrator that runs many coding agents in parallel from a dependency graph of tasks against one repository. Dependencies gate admission. Each agent works in its own git worktree and reports through a local API. Humans resolve blockers and review milestones. A task is done only after its sealed work has been rebased, checked, and published to the integration branch. The orchestrator itself is a static TypeScript daemon with named hook points for model-backed judgment, designed to converge to the same outcome after a crash at any point. Task graphs are imported from Linear, Jira, or GitHub Issues through the session's own tracker connector (the `gh` CLI for GitHub), and progress is mirrored back to the tracker.
 
 ## Running locally
 
@@ -17,7 +17,7 @@ claude plugin install orchestrator@orchestrator
 
 From a checkout instead, run `npm install && npm run build` once, then `claude --plugin-dir /path/to/orchestrator/hosts/claude-code`.
 
-Then use the skills: `import` turns a Linear or Jira epic into the graph with the session's own tracker connector, `run` starts the daemon, has the session's own subagents execute the launches through a bundled workflow, and monitors (questions, reviews, stuck tasks, proposals, tracker mirroring), `work` adds workers from another session or switches the mode, and `review` judges a milestone's pinned commit. On `start` the daemon detects the repository's check command, integration branch, and the tools agents may run, and the skill reports them with their sources; when nothing supplies a check command, the skill looks in `CLAUDE.md`, the README, and the root manifests and sets it through `configure`, or asks. No `orchestrator.yaml` is needed; the terminal section below describes the resolution order and the overrides. The plugin's launcher (`hosts/claude-code/bin/orchestrator.mjs`) runs the package from the plugin's own `node_modules` after a marketplace install (Claude Code installs the published package `@autodidacticon/orchestrator` pinned in `hosts/claude-code/package.json`), from the checkout when loaded with `--plugin-dir`, and through `npx` as a fallback.
+Then use the skills: `import` turns a Linear or Jira epic, or a GitHub issue or milestone with its sub-issues, into the graph with the session's own tracker connector, `run` starts the daemon, has the session's own subagents execute the launches through a bundled workflow, and monitors (questions, reviews, stuck tasks, proposals, tracker mirroring), `work` adds workers from another session or switches the mode, and `review` judges a milestone's pinned commit. On `start` the daemon detects the repository's check command, integration branch, and the tools agents may run, and the skill reports them with their sources; when nothing supplies a check command, the skill looks in `CLAUDE.md`, the README, and the root manifests and sets it through `configure`, or asks. No `orchestrator.yaml` is needed; the terminal section below describes the resolution order and the overrides. The plugin's launcher (`hosts/claude-code/bin/orchestrator.mjs`) runs the package from the plugin's own `node_modules` after a marketplace install (Claude Code installs the published package `@autodidacticon/orchestrator` pinned in `hosts/claude-code/package.json`), from the checkout when loaded with `--plugin-dir`, and through `npx` as a fallback.
 
 Who executes launches is `runner.mode`: `pull` parks each prepared launch until a worker claims it, and is what a run started from the plugin defaults to, with the `run` skill's workflow claiming launches for visible session subagents; `spawn` has the daemon run headless Claude Code agents, and is the default for `orchestrator-ctl start` from a terminal, where no session is attached; `mixed` parks for `runner.claimWindowMs` (default 60 s) and then spawns. `runner.mode` in `orchestrator.yaml`, `orchestrator-ctl mode <mode>`, or `start` with `mode` are explicit choices that the plugin default never overrides. A claimed launch has no process: its lease is renewed by the worker's API calls and by progress in the worktree, and `release` hands it back (untouched: no attempt spent; with `--keep`, or `keep: true` on the tool, uncommitted work is committed on the launch branch, the branch is kept, and the task returns to unstarted at no cost with an `interrupted` context in its next brief, up to `daemon.maxKeptReleases` times, default 3).
 
@@ -37,6 +37,8 @@ npm link            # puts orchestrator, orchestrator-ctl, orchestrator-mcp, orc
    ```yaml
    integrationBranch: main
    checkCommand: npm test          # run on every rebased submission before it is published
+   apiBind: 127.0.0.1              # the address the API binds; 0.0.0.0 in a cluster (file key, read at start)
+   apiBaseUrl: http://orchestrator.orch.svc:8080   # the URL advertised to agents and clients when it differs from the bind
    capacity: 2                     # agents in parallel
    runner:
      claude:
@@ -106,10 +108,16 @@ By default agents are headless Claude Code sessions (`runnerCommand`, with `{all
 
 `npm test` runs everything that needs no model: unit tests, slices with real subprocess agents, git, and the HTTP API, and the crash-injection suite in `test/crash`, which is the project gate. Three opt-in tests use a real model: `ORCH_E2E_CLAUDE=1 npm test -- test/e2e/claude` runs three Claude Code agents, `ORCH_E2E_CLAUDE_PLUGIN=1 npm test -- test/e2e/plugin` has a Claude Code session operate a run through the plugin, and `ORCH_E2E_CLAUDE_WORK=1 npm test -- test/e2e/work` has a session execute a run in pull mode with two workers through the work skill.
 
+### Running on Kubernetes
+
+The daemon also runs as a long-lived container. `deploy/README.md` is the operational reference: the `Dockerfile` builds an image with Node, git, and ssh only (`orchestrator` and `orchestrator-ctl` on PATH); `deploy/base` is a kustomize layout with a Recreate Deployment that clones `REPO_URL` into a volume, probes `/healthz` and `/readyz`, and runs in pull mode behind a ClusterIP Service; `deploy/overlays/kind` adds an in-cluster git origin and a one-task graph; and `deploy/smoke.sh` builds, loads into kind, applies the overlay, and asserts the milestone claims over the API (`--dry-run` prints the steps). The cluster-facing settings are `apiBind` and `apiBaseUrl` (the address the API binds and the URL it advertises; file keys read at start, not runtime overrides), `ORCH_LOG_FORMAT=json` for one JSON object per log line, and `ORCH_URL` on a client naming a non-loopback host, which makes `orchestrator-ctl` and the operator MCP server use that daemon without ever starting a local one. Workers do not yet run in the cluster: a daemon there parks launches for session workers, and the mounted graph is read-only, so import and proposal acceptance fail in that layout until the graph lives in the store. The specification is [cluster-runtime](openspec/specs/cluster-runtime/spec.md) and the "Container mode" requirement of [operator-control](openspec/specs/operator-control/spec.md).
+
 ## Behaviour
 
 A task is done once its sealed work has been rebased onto the integration branch, checked, and published as one squash commit with `Orchestrator-Task` and `Orchestrator-Launch` trailers; a gated milestone then waits for a human to accept its pinned commit. The daemon converges to the same outcome after a crash at any named point, and surviving agents are adopted on restart.
 
+Child processes. Spawned agents and check commands inherit the daemon's environment with `ORCH_HOME` pointed inside the run's data directory and the client-side variables (`ORCH_URL`, `ORCH_REPO`, `ORCH_DATA_DIR`) removed, so repository code they run cannot discover or stop the user's daemons; `ORCH_API` stays, since the agent shim needs its own daemon. A `shutdown` through the route records who asked (attachment id, remote address, user agent) in an `operator.shutdown` event and in the exit record, and the revival refusal after a stop names the caller.
+
 Tracker sync. After an import that names its tracker, the daemon derives tracker-bound effects from its own transitions into a durable outbox, in the same transaction as the transition: an issue goes in progress on its first launch, done when its work is published (or, with `tracker.doneAt: milestoneAccepted`, when its gated milestone is accepted), cancelled on cancel; the parent issue follows its first starting child and closes when the milestone is accepted. Comments are posted where a human is needed: an agent's question, a block with its reason, a milestone ready for review, accepted, or rejected (`tracker.commentOnDone` and `tracker.commentOnFail` add completion and failure comments, both off by default). The daemon never talks to a tracker: the `run` skill drains the outbox after every `wait` with the session's Linear or Atlassian tools, mapping states by type, and acknowledges each effect (`outbox`, `ack` tools; `GET /v1/outbox`, `POST /v1/outbox/:id/{ack,nack}` routes; `orchestrator-ctl outbox | ack`). Every comment ends with a marker line, `— orchestrator run <id> · event <n>`, so a drainer can recognise its own comments and never posts one twice. A human reply under a question comment is relayed as the answer (`tracker.answersFromComments`, default on); the first answer wins. Config keys: `tracker.enabled` (`auto` | `always` | `never`), `maxAttempts`, `parentInProgress`, `doneAt`, `commentOnDone`, `commentOnFail`, `answersFromComments`. Status reports `tracker`, `outboxPending`, and `trackerErrors`. Manual check against a sandbox workspace: import an epic with the `import` skill in a Claude Code session connected to Linear or Jira, run it with the `run` skill, and watch the child issues move and the question comment appear; this is not part of `npm test`.
 
 The daemon's life. A session attaches through the plugin's operator server, which registers its process ancestry with the daemon on first contact and ends the attachment when its transport closes; the plugin's `SessionEnd` hook posts the ending session's ancestry as well, and the daemon ends any attachment whose own process has died. A claim made through a session carries its attachment, and when the attachment ends the daemon releases that launch with `keep` on the next tick: uncommitted work becomes a work-in-progress commit on the launch branch, the worktree goes, the branch stays, the task returns to `unstarted` with `attempts` unchanged and an `interrupted` context (prior launch, branch, head, the WIP commit) in its next brief, counted in `interruptions` and bounded by `daemon.maxKeptReleases`. With nothing live, no verifier job pending, no cascade pending, no request in flight, and no session attached, the daemon exits after `daemon.idleExitMs`, writes an exit record, and is revived by the next operator call; the plugin's `SessionStart` hook names runs whose daemon is alive or whose last exit left parked launches, open questions, a milestone under review, or a stall. Releasing a new version: bump the version in `package.json`, `hosts/claude-code/.claude-plugin/plugin.json`, and the pin in `hosts/claude-code/package.json`; `npm publish` (which builds); regenerate `hosts/claude-code/package-lock.json` with `npm install --package-lock-only` in that directory against the published version; then push.
@@ -124,23 +132,24 @@ Graph mutation. Milestones hold no work, so they never block a reopen: reopening
 
 ### Requirements
 
-Current specs in `openspec/specs/`, synced from the archived changes `add-orchestrator-v1`, `add-session-operator`, `add-tracker-sync`, `add-health-monitoring`, `add-graph-mutation`, `add-pull-runner`, `add-scheduling-policy`, `replace-sqlite-driver`, `add-daemon-lifecycle`, `add-toolchain-discovery`, and `add-model-selection`:
+Current specs in `openspec/specs/`, synced from the archived changes `add-orchestrator-v1`, `add-session-operator`, `add-tracker-sync`, `add-health-monitoring`, `add-graph-mutation`, `add-pull-runner`, `add-scheduling-policy`, `replace-sqlite-driver`, `add-daemon-lifecycle`, `add-toolchain-discovery`, `add-model-selection`, and `add-cluster-runtime`:
 
 - Capability specs
   - [task-graph](openspec/specs/task-graph/spec.md): loading, validation, external nodes, readiness, milestones, stall detection, revisions, reload compatibility, revocability through milestones and the cascade plan, critical path length
   - [task-lifecycle](openspec/specs/task-lifecycle/spec.md): states, transitions by actor, admission, counters, leases, retry, reopen guard, cascade reopen, milestone reset and review, cancellation
-  - [agent-protocol](openspec/specs/agent-protocol/spec.md): the brief, the API, deduplication, sealing, no-op and acceptance checks, blocking and resume, fallback, fencing, MCP façade, brief validation, the check command and tool rules in the brief
-  - [integration-pipeline](openspec/specs/integration-pipeline/spec.md): worktrees, the verifier and the hold while no check command is configured, publication, conflicts, foreign commits, milestone tags
-  - [crash-recovery](openspec/specs/crash-recovery/spec.md): durable records, recovery per boundary, adoption, fencing, sweeps, crash points, invariants, store transactions
-  - [operator-control](openspec/specs/operator-control/spec.md): operator routes shared by the CLI and the MCP server, status, run directories, daemon lifecycle, idle exit, exit record and revival, session attachments, the configuration route and start arguments, event stream, review bundle, graph import, pause and resume, shutdown, logs
+  - [agent-protocol](openspec/specs/agent-protocol/spec.md): the brief, the API, deduplication, sealing, no-op and acceptance checks, blocking and resume, fallback, fencing, MCP façade, brief validation, the check command and tool rules in the brief, the isolated agent environment
+  - [integration-pipeline](openspec/specs/integration-pipeline/spec.md): worktrees, the verifier and the hold while no check command is configured, publication, conflicts, foreign commits, milestone tags, the check environment
+  - [crash-recovery](openspec/specs/crash-recovery/spec.md): durable records, recovery per boundary, adoption, fencing, sweeps, crash points, invariants, store transactions, idle exit and revival including container mode
+  - [operator-control](openspec/specs/operator-control/spec.md): operator routes shared by the CLI and the MCP server, status, run directories, daemon lifecycle, idle exit, exit record and revival, session attachments, the configuration route and start arguments, event stream, review bundle, graph import, pause and resume, shutdown, logs, container mode (signalled shutdown, JSON logs, remote URL), attributed shutdown
   - [operator-mcp](openspec/specs/operator-mcp/spec.md): the operator MCP server a host session drives: tool set, wait, start with configuration arguments, configure, review
-  - [graph-import](openspec/specs/graph-import/spec.md): normalized issue records, mapping rules including the `model:` and `effort:` selector labels, acceptance criteria and scope extraction, priority normalisation, import outcome
-  - [host-integration](openspec/specs/host-integration/spec.md): package entrypoints, per-host wrappers, the plugin launcher and session hooks, skills and how they report the toolchain and resolve `needsConfig`, no native dependencies, quiet SQLite binding
+  - [graph-import](openspec/specs/graph-import/spec.md): normalized issue records from Linear, Jira, or GitHub, mapping rules including the `model:` and `effort:` selector labels, acceptance criteria and scope extraction, priority normalisation, import outcome
+  - [host-integration](openspec/specs/host-integration/spec.md): package entrypoints, per-host wrappers, the plugin launcher and session hooks, skills and how they report the toolchain and resolve `needsConfig`, no native dependencies, quiet SQLite binding, the import and run skills' Linear, Jira, and GitHub branches
   - [tracker-sync](openspec/specs/tracker-sync/spec.md): the durable outbox of tracker effects, effect kinds and marker, mirroring policy, done semantics, the drainer contract
   - [health-monitoring](openspec/specs/health-monitoring/spec.md): process liveness, progress signals, stuck detection and escalation, the diagnosis hook, launch and run budgets, usage accounting, the base-moved notice
   - [pull-runner](openspec/specs/pull-runner/spec.md): runner modes and the claim window, claim and release with keep (the claim carrying the launch's model and effort), session attachments, worker identity and idempotent re-claim, access modes with remote reserved
   - [scheduling-policy](openspec/specs/scheduling-policy/spec.md): the admission ordering chain and its stages, declared scopes, the overlap rule, the scope filter at admission
   - [toolchain-discovery](openspec/specs/toolchain-discovery/spec.md): resolution order and provenance, toolchain detection and the package manager, integration branch detection and pinning, derived allowed tools, runner command composition with the allow-list, model, and effort slots, the resolved configuration record, runtime overrides and start-only keys
+  - [cluster-runtime](openspec/specs/cluster-runtime/spec.md): bind host and advertised URL, health probes, the daemon image, the reference kustomize manifests and kind overlay, the read-only mounted graph, the smoke test
   - [model-selection](openspec/specs/model-selection/spec.md): the run default worker model and effort with provenance, per-task selectors and their validation, resolution fixed at preparation, delivery to spawned agents and claimed workers, visibility to operators
 - Archived change `add-orchestrator-v1` (the v1 runtime): [Proposal](openspec/changes/archive/2026-10-12-add-orchestrator-v1/proposal.md), [Design](openspec/changes/archive/2026-10-12-add-orchestrator-v1/design.md), [Tasks](openspec/changes/archive/2026-10-12-add-orchestrator-v1/tasks.md)
 - Archived change `add-session-operator` (operate from a Claude Code session): [Proposal](openspec/changes/archive/2026-10-12-add-session-operator/proposal.md), [Design](openspec/changes/archive/2026-10-12-add-session-operator/design.md), [Tasks](openspec/changes/archive/2026-10-12-add-session-operator/tasks.md)
@@ -155,4 +164,9 @@ Current specs in `openspec/specs/`, synced from the archived changes `add-orches
 
 - Archived change `add-model-selection` (workers run `claude-opus-5-5` at `medium` by default; a task names its own model or effort by payload or by `model:`/`effort:` labels; the choice is fixed per launch and carried to spawned agents and session workers): [Proposal](openspec/changes/archive/2026-10-17-add-model-selection/proposal.md), [Design](openspec/changes/archive/2026-10-17-add-model-selection/design.md), [Tasks](openspec/changes/archive/2026-10-17-add-model-selection/tasks.md)
 
-No change is active. The next planned piece of work, not yet proposed, is the usage and log loss when a launch is reaped on report.
+- Archived change `harden-daemon-boundaries` (spawned agents and check commands get an isolated `ORCH_HOME` and lose the client-side daemon variables; the shutdown route records its caller in the event log and the exit record): [Proposal](openspec/changes/archive/2026-10-17-harden-daemon-boundaries/proposal.md), [Design](openspec/changes/archive/2026-10-17-harden-daemon-boundaries/design.md), [Tasks](openspec/changes/archive/2026-10-17-harden-daemon-boundaries/tasks.md)
+- Archived change `fix-tracker-mapping-gaps` (a cancelled child is a satisfied external node; closing a GitHub issue removes the in-progress label): [Proposal](openspec/changes/archive/2026-10-17-fix-tracker-mapping-gaps/proposal.md), [Design](openspec/changes/archive/2026-10-17-fix-tracker-mapping-gaps/design.md), [Tasks](openspec/changes/archive/2026-10-17-fix-tracker-mapping-gaps/tasks.md)
+- Archived change `add-github-tracker` (GitHub Issues as a tracker: sub-issues and `blockedBy` dependencies at import, `stateReason` mapping, an optional in-progress label, closing with reasons and sub-issue proposals at sync, all through the session's `gh`): [Proposal](openspec/changes/archive/2026-10-17-add-github-tracker/proposal.md), [Design](openspec/changes/archive/2026-10-17-add-github-tracker/design.md), [Tasks](openspec/changes/archive/2026-10-17-add-github-tracker/tasks.md)
+- Archived change `add-cluster-runtime` (the specification for milestone M1 of the cloud-native project, written after an unattended orchestrator run landed the daemon image, kustomize manifests, kind overlay, smoke script, health probes, bind host and advertised URL, and container-mode lifecycle): [Proposal](openspec/changes/archive/2026-10-17-add-cluster-runtime/proposal.md), [Design](openspec/changes/archive/2026-10-17-add-cluster-runtime/design.md), [Tasks](openspec/changes/archive/2026-10-17-add-cluster-runtime/tasks.md)
+
+No change is active. The next planned piece of work, not yet proposed, is the usage and log loss when a launch is reaped on report, and a re-import rule for tasks the run has already finished (see the GitHub tracker test notes in the archive).

package/dist/src/agent/mcp-shim.js

@@ -42,7 +42,7 @@ export const TOOL_NAMES = ['heartbeat', 'report', 'block', 'inbox', 'log'];
 export async function startShim(env) {
     const { McpServer } = await import('@modelcontextprotocol/sdk/server/mcp.js');
     const { StdioServerTransport } = await import('@modelcontextprotocol/sdk/server/stdio.js');
-    const server = new McpServer({ name: 'orchestrator-agent-api', version: '0.2.0' });
+    const server = new McpServer({ name: 'orchestrator-agent-api', version: '0.3.1' });
     const text = (r) => ({
         content: [{ type: 'text', text: JSON.stringify({ status: r.status, ...(typeof r.body === 'object' && r.body ? r.body : { body: r.body }) }) }],
         isError: r.status >= 400,

package/dist/src/agent/server.js

@@ -2,6 +2,7 @@
  * Loopback HTTP server for agents and operators.
  *   POST /v1/launches/:id/{heartbeat,report,block,log}
  *   GET  /v1/launches/:id/inbox
+ * Health probes (/healthz, /readyz) and operator routes are registered by operator/routes.ts.
  * Operator routes are registered by operator/routes.ts.
  */
 import http from 'node:http';
@@ -25,23 +26,27 @@ export class ApiServer {
     addRoute(method, pattern, handler) {
         this.routes.push({ method, pattern, handler });
     }
-    async listen(port = 0) {
+    /** Binds to `bind` and returns the advertised URL: `baseUrl` when set, else `http://<bind>:<port>`. */
+    async listen(port = 0, opts = {}) {
+        const bind = opts.bind ?? '127.0.0.1';
         await new Promise((resolve, reject) => {
             const onError = (err) => reject(err);
             this.server.once('error', onError);
-            this.server.listen(port, '127.0.0.1', () => {
+            this.server.listen(port, bind, () => {
                 this.server.off('error', onError);
                 resolve();
             });
         });
         this.port = this.server.address().port;
-        const url = `http://127.0.0.1:${this.port}`;
+        const url = opts.baseUrl ? opts.baseUrl.replace(/\/+$/, '') : `http://${bind.includes(':') ? `[${bind}]` : bind}:${this.port}`;
         this.orch.apiBaseUrl = url;
         return url;
     }
     async close() {
-        await new Promise((resolve) => this.server.close(() => resolve()));
+        // Close open connections (a long-polling block or inbox) before waiting, or the close callback waits for them.
+        const closed = new Promise((resolve) => this.server.close(() => resolve()));
         this.server.closeAllConnections();
+        await closed;
     }
     async dispatch(req, res) {
         const url = new URL(req.url ?? '/', 'http://127.0.0.1');
@@ -51,8 +56,8 @@ export class ApiServer {
             const m = r.pattern.exec(url.pathname);
             if (!m)
                 continue;
-            // A probe is a liveness check that must not count as activity. See specs/operator-control "Idle exit".
-            const probe = req.method === 'GET' && url.pathname === '/v1/status' && url.searchParams.get('probe') === '1';
+            // A probe is a liveness check that must not count as activity. See specs/operator-control "Idle exit" and specs/cluster-runtime "Probes".
+            const probe = req.method === 'GET' && ((url.pathname === '/v1/status' && url.searchParams.get('probe') === '1') || url.pathname === '/healthz' || url.pathname === '/readyz');
             const attachment = req.headers['x-orch-attachment'];
             const attachmentId = typeof attachment === 'string' && attachment ? attachment : undefined;
             this.orch.requestBegan();

package/dist/src/agent/server.js.map

@@ -1 +1 @@
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package/dist/src/config.js

@@ -29,6 +29,10 @@ export const configSchema = z.object({
     checkTimeoutMs: z.number().int().positive().default(15 * 60_000),
     /** Loopback API port; 0 picks a free port. */
     apiPort: z.number().int().nonnegative().default(0),
+    /** Address the API binds to; `0.0.0.0` in a cluster. See specs/cluster-runtime. */
+    apiBind: z.string().min(1).default('127.0.0.1'),
+    /** The URL the daemon advertises (kv, daemon.json, briefs, claims) instead of `http://<apiBind>:<port>`. */
+    apiBaseUrl: z.string().url().optional(),
     /** Agent retry window before falling back to the report file. */
     retryWindowMs: z.number().int().positive().default(120_000),
     /** Runner command template; {brief}, {worktree}, {launchId}, {mcpConfig}, and {allowedTools} are substituted at every spawn. */
@@ -78,6 +82,8 @@ export const configSchema = z.object({
         stuckAfterMs: z.number().int().nonnegative().default(15 * 60_000),
         /** Idle time before a stuck launch is failed; 0 disables. */
         stuckFailAfterMs: z.number().int().nonnegative().default(45 * 60_000),
+        /** How long a submitted task's process may keep running so the runner can write its usage; 0 reaps at once. See specs/health-monitoring "Usage accounting". */
+        reportGraceMs: z.number().int().nonnegative().default(30_000),
         baseMovedNotice: z.boolean().default(true),
     })
         .default({}),

package/dist/src/config.js.map

@@ -1 +1 @@
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package/dist/src/graph/diff.js

@@ -43,7 +43,9 @@ export function classifyReload(prev, next, overlay) {
         if (started && depsChanged) {
             reasons.push({ id, code: 'depsChangedStarted', message: `deps of ${id} changed while started` });
         }
-        if (started && kindChanged) {
+        // A published task re-imported as a done external is what the run's own progress produces; the entry stays done. See specs/task-graph "Reload compatibility".
+        const finishedToDoneExternal = old.kind === 'task' && nu.kind === 'external' && status.kind === 'done' && nu.done === true;
+        if (started && kindChanged && !finishedToDoneExternal) {
             reasons.push({ id, code: 'kindChangedStarted', message: `kind of ${id} changed while started` });
         }
     }

package/dist/src/graph/diff.js.map

@@ -1 +1 @@
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+{"version":3,"file":"diff.js","sourceRoot":"","sources":["../../../src/graph/diff.ts"],"names":[],"mappings":"AAAA;;GAEG;AACH,OAAO,EAAE,OAAO,EAAE,SAAS,EAAgB,MAAM,oBAAoB,CAAC;AAsBtE,SAAS,OAAO,CAAC,CAAgB,EAAE,CAAgB;IACjD,IAAI,CAAC,CAAC,MAAM,KAAK,CAAC,CAAC,MAAM;QAAE,OAAO,KAAK,CAAC;IACxC,MAAM,CAAC,GAAG,IAAI,GAAG,CAAC,CAAC,CAAC,CAAC;IACrB,OAAO,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;AAClC,CAAC;AAED,MAAM,UAAU,cAAc,CAAC,IAAW,EAAE,IAAW,EAAE,OAAgB;IACvE,MAAM,OAAO,GAAmB,EAAE,CAAC;IACnC,MAAM,KAAK,GAAS,EAAE,CAAC;IACvB,MAAM,OAAO,GAAS,EAAE,CAAC;IACzB,MAAM,OAAO,GAAS,EAAE,CAAC;IACzB,MAAM,cAAc,GAAS,EAAE,CAAC;IAChC,MAAM,oBAAoB,GAAS,EAAE,CAAC;IAEtC,KAAK,MAAM,EAAE,IAAI,IAAI,CAAC,KAAK,CAAC,IAAI,EAAE,EAAE,CAAC;QACnC,IAAI,CAAC,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,EAAE,CAAC;YAAE,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IAC1C,CAAC;IACD,KAAK,MAAM,CAAC,EAAE,EAAE,GAAG,CAAC,IAAI,IAAI,CAAC,KAAK,EAAE,CAAC;QACnC,MAAM,MAAM,GAAG,OAAO,CAAC,OAAO,EAAE,EAAE,CAAC,CAAC,MAAM,CAAC;QAC3C,uHAAuH;QACvH,MAAM,OAAO,GAAG,GAAG,CAAC,IAAI,KAAK,WAAW,IAAI,SAAS,CAAC,MAAM,CAAC,CAAC;QAC9D,MAAM,EAAE,GAAG,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC;QAC9B,IAAI,CAAC,EAAE,EAAE,CAAC;YACR,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;YACjB,IAAI,OAAO,EAAE,CAAC;gBACZ,OAAO,CAAC,IAAI,CAAC,EAAE,EAAE,EAAE,IAAI,EAAE,gBAAgB,EAAE,OAAO,EAAE,QAAQ,EAAE,yCAAyC,EAAE,CAAC,CAAC;YAC7G,CAAC;YACD,SAAS;QACX,CAAC;QACD,MAAM,WAAW,GAAG,CAAC,OAAO,CAAC,GAAG,CAAC,IAAI,EAAE,EAAE,CAAC,IAAI,CAAC,CAAC;QAChD,MAAM,WAAW,GAAG,GAAG,CAAC,IAAI,KAAK,EAAE,CAAC,IAAI,CAAC;QACzC,MAAM,YAAY,GAAG,GAAG,CAAC,KAAK,KAAK,EAAE,CAAC,KAAK,IAAI,GAAG,CAAC,IAAI,KAAK,EAAE,CAAC,IAAI,IAAI,IAAI,CAAC,SAAS,CAAC,GAAG,CAAC,OAAO,CAAC,KAAK,IAAI,CAAC,SAAS,CAAC,EAAE,CAAC,OAAO,CAAC,CAAC;QAClI,IAAI,WAAW,IAAI,WAAW,IAAI,YAAY;YAAE,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QACjE,IAAI,OAAO,IAAI,IAAI,CAAC,SAAS,CAAC,GAAG,CAAC,OAAO,CAAC,KAAK,IAAI,CAAC,SAAS,CAAC,EAAE,CAAC,OAAO,CAAC;YAAE,cAAc,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QACnG,IAAI,GAAG,CAAC,IAAI,KAAK,WAAW,IAAI,EAAE,CAAC,IAAI,KAAK,WAAW,IAAI,WAAW,IAAI,CAAC,MAAM,CAAC,IAAI,KAAK,MAAM,IAAI,MAAM,CAAC,IAAI,KAAK,WAAW,CAAC;YAAE,oBAAoB,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QACjK,IAAI,OAAO,IAAI,WAAW,EAAE,CAAC;YAC3B,OAAO,CAAC,IAAI,CAAC,EAAE,EAAE,EAAE,IAAI,EAAE,oBAAoB,EAAE,OAAO,EAAE,WAAW,EAAE,wBAAwB,EAAE,CAAC,CAAC;QACnG,CAAC;QACD,8JAA8J;QAC9J,MAAM,sBAAsB,GAAG,GAAG,CAAC,IAAI,KAAK,MAAM,IAAI,EAAE,CAAC,IAAI,KAAK,UAAU,IAAI,MAAM,CAAC,IAAI,KAAK,MAAM,IAAI,EAAE,CAAC,IAAI,KAAK,IAAI,CAAC;QAC3H,IAAI,OAAO,IAAI,WAAW,IAAI,CAAC,sBAAsB,EAAE,CAAC;YACtD,OAAO,CAAC,IAAI,CAAC,EAAE,EAAE,EAAE,IAAI,EAAE,oBAAoB,EAAE,OAAO,EAAE,WAAW,EAAE,wBAAwB,EAAE,CAAC,CAAC;QACnG,CAAC;IACH,CAAC;IAED,IAAI,OAAO,CAAC,MAAM;QAAE,OAAO,EAAE,UAAU,EAAE,KAAK,EAAE,OAAO,EAAE,CAAC;IAC1D,OAAO,EAAE,UAAU,EAAE,IAAI,EAAE,KAAK,EAAE,OAAO,EAAE,OAAO,EAAE,cAAc,EAAE,oBAAoB,EAAE,CAAC;AAC7F,CAAC"}

package/dist/src/import/mapping.js

@@ -26,10 +26,15 @@ export const importOptionsSchema = z.object({
     gated: z.boolean().default(true),
 });
 /** The tracker an import came from; recorded by the daemon so effects can be derived. See specs/graph-import "Tracker record". */
-export const trackerSchema = z.object({
-    kind: z.enum(['linear', 'atlassian']),
+export const trackerSchema = z
+    .object({
+    kind: z.enum(['linear', 'atlassian', 'github']),
+    /** Linear workspace key, Jira site, or GitHub repository as `owner/repo`. */
     workspace: z.string().min(1).optional(),
-});
+    /** GitHub only: the label that stands for the in-progress state, read at import and applied at sync. */
+    inProgressLabel: z.string().min(1).optional(),
+})
+    .refine((t) => t.inProgressLabel === undefined || t.kind === 'github', { message: 'inProgressLabel applies to kind github only', path: ['inProgressLabel'] });
 export const importInputSchema = z.object({
     root: z.string().min(1),
     issues: z.array(issueRecordSchema),
@@ -148,7 +153,8 @@ export function mapIssues(raw) {
             nodes.push({ id, kind: 'external', done: false, deps: [], title: id, trackerState: 'unknown', unknown: true });
         }
         else {
-            nodes.push({ id, kind: 'external', done: rec.state === 'done', deps: [], ...payloadOf(rec), externalCause: cause });
+            // Done and cancelled both mean nothing more will happen: neither holds a milestone or a dependant. See specs/graph-import "Mapping rules".
+            nodes.push({ id, kind: 'external', done: rec.state === 'done' || rec.state === 'cancelled', deps: [], ...payloadOf(rec), externalCause: cause });
         }
         summary.external++;
     };

package/dist/src/import/mapping.js.map

@@ -1 +1 @@
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package/dist/src/index.js

@@ -24,6 +24,7 @@ export { BASE_RULES, rulesFor, isSafeRule, composeAllowedTools } from './toolcha
 export { detectIntegrationBranch } from './toolchain/branch.js';
 export { resolveLayers, reportOf, mergeOverrides, overridesSchema, OVERRIDABLE_KEYS, START_ONLY_KEYS } from './runs/resolve.js';
 export { InprocRunner } from './runner/inproc.js';
+export { childEnv, isolationEnv, stripEmpty, CHILD_HOME, CLIENT_VARS } from './runs/childEnv.js';
 export { GitWorkspace } from './workspace/git-workspace.js';
 export { FakeWorkspace } from './workspace/fake.js';
 export { GitVerifierBackend, TRAILER_LAUNCH, TRAILER_TASK } from './verify/verifier.js';

package/dist/src/index.js.map

@@ -1 +1 @@
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package/dist/src/log.js

@@ -0,0 +1,20 @@
+export function logFormatOf(env = process.env) {
+    return env['ORCH_LOG_FORMAT'] === 'json' ? 'json' : 'text';
+}
+/** One log line, newline included. In JSON, `ts`, `level`, and `msg` win over data fields of the same name. */
+export function formatLogLine(format, level, msg, data, now = new Date()) {
+    const ts = now.toISOString();
+    if (format === 'json') {
+        const fields = Object.fromEntries(Object.entries(data ?? {}).filter(([k]) => k !== 'ts' && k !== 'level' && k !== 'msg'));
+        return `${JSON.stringify({ ts, level, msg, ...fields })}\n`;
+    }
+    return `${ts} ${level.toUpperCase()} ${msg}${data ? ` ${JSON.stringify(data)}` : ''}\n`;
+}
+export function makeStderrLogger(format = logFormatOf(), write = (line) => process.stderr.write(line)) {
+    return {
+        info: (msg, data) => write(formatLogLine(format, 'info', msg, data)),
+        warn: (msg, data) => write(formatLogLine(format, 'warn', msg, data)),
+        error: (msg, data) => write(formatLogLine(format, 'error', msg, data)),
+    };
+}
+//# sourceMappingURL=log.js.map

package/dist/src/log.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"log.js","sourceRoot":"","sources":["../../src/log.ts"],"names":[],"mappings":"AAWA,MAAM,UAAU,WAAW,CAAC,MAAyB,OAAO,CAAC,GAAG;IAC9D,OAAO,GAAG,CAAC,iBAAiB,CAAC,KAAK,MAAM,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,MAAM,CAAC;AAC7D,CAAC;AAED,+GAA+G;AAC/G,MAAM,UAAU,aAAa,CAAC,MAAiB,EAAE,KAAe,EAAE,GAAW,EAAE,IAA8B,EAAE,GAAG,GAAG,IAAI,IAAI,EAAE;IAC7H,MAAM,EAAE,GAAG,GAAG,CAAC,WAAW,EAAE,CAAC;IAC7B,IAAI,MAAM,KAAK,MAAM,EAAE,CAAC;QACtB,MAAM,MAAM,GAAG,MAAM,CAAC,WAAW,CAAC,MAAM,CAAC,OAAO,CAAC,IAAI,IAAI,EAAE,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,KAAK,IAAI,IAAI,CAAC,KAAK,OAAO,IAAI,CAAC,KAAK,KAAK,CAAC,CAAC,CAAC;QAC1H,OAAO,GAAG,IAAI,CAAC,SAAS,CAAC,EAAE,EAAE,EAAE,KAAK,EAAE,GAAG,EAAE,GAAG,MAAM,EAAE,CAAC,IAAI,CAAC;IAC9D,CAAC;IACD,OAAO,GAAG,EAAE,IAAI,KAAK,CAAC,WAAW,EAAE,IAAI,GAAG,GAAG,IAAI,CAAC,CAAC,CAAC,IAAI,IAAI,CAAC,SAAS,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC,CAAC,EAAE,IAAI,CAAC;AAC1F,CAAC;AAED,MAAM,UAAU,gBAAgB,CAAC,SAAoB,WAAW,EAAE,EAAE,QAAgC,CAAC,IAAI,EAAE,EAAE,CAAC,OAAO,CAAC,MAAM,CAAC,KAAK,CAAC,IAAI,CAAC;IACtI,OAAO;QACL,IAAI,EAAE,CAAC,GAAG,EAAE,IAAI,EAAE,EAAE,CAAC,KAAK,CAAC,aAAa,CAAC,MAAM,EAAE,MAAM,EAAE,GAAG,EAAE,IAAI,CAAC,CAAC;QACpE,IAAI,EAAE,CAAC,GAAG,EAAE,IAAI,EAAE,EAAE,CAAC,KAAK,CAAC,aAAa,CAAC,MAAM,EAAE,MAAM,EAAE,GAAG,EAAE,IAAI,CAAC,CAAC;QACpE,KAAK,EAAE,CAAC,GAAG,EAAE,IAAI,EAAE,EAAE,CAAC,KAAK,CAAC,aAAa,CAAC,MAAM,EAAE,OAAO,EAAE,GAAG,EAAE,IAAI,CAAC,CAAC;KACvE,CAAC;AACJ,CAAC"}

package/dist/src/loop/orchestrator.js

@@ -24,6 +24,7 @@ import { recordSignal } from '../health/progress.js';
 import { humanDiagnoser, idleMsOf } from '../health/stuck.js';
 import { configSummary, mergeOverrides, overridesSchema, readOverrides, reportOf, resolveLayers, START_ONLY_KEYS } from '../runs/resolve.js';
 import { isEffort, isModelName } from '../runner/selection.js';
+import { isolationEnv } from '../runs/childEnv.js';
 export const questionSchema = z.object({
     kind: z.enum(['needsDecision', 'needsAccess', 'impossible', 'dependencyCancelled', 'outOfScope', 'insufficientSpec', 'milestoneRejected']),
     message: z.string().min(1),
@@ -381,6 +382,8 @@ export class Orchestrator {
     }
     agentEnv(launch) {
         return {
+            // Isolation first: an isolated ORCH_HOME and no client-side daemon variables (empty values are deleted by the runner). See specs/agent-protocol "Agent environment".
+            ...isolationEnv(this.config.dataDir),
             ORCH_LAUNCH_ID: launch.launchId,
             ORCH_TOKEN: launch.token,
             ORCH_API: this.apiBaseUrl,
@@ -673,6 +676,8 @@ export class Orchestrator {
         });
         // The agent's claim is recorded as submitted; structural checks are the verifier's first step.
         this.transition(launch.taskId, { kind: 'submitted' }, 'agent', 'submit', { interruptions: 0 });
+        // The process may keep running for the report grace so its usage reaches the log. See specs/health-monitoring "Usage accounting".
+        this.store.updateLaunch(launch.launchId, { reportedAt: this.now() });
         const check = checkSubmission({
             sealedSha,
             baseSha: launch.baseSha,