@atomic-ehr/fhir-canonical-manager 0.0.8 → 0.0.9

package/dist/index.js

@@ -1,593 +1,6 @@
-import * as path from "path";
-import * as fs from "fs/promises";
-import { createHash } from "crypto";
-import { exec } from "child_process";
-import { promisify } from "util";
-const execAsync = promisify(exec);
-class ShellError extends Error {
-    exitCode;
-    stdout;
-    stderr;
-    constructor(message, exitCode, stdout, stderr) {
-        super(message);
-        this.name = "ShellError";
-        this.exitCode = exitCode;
-        this.stdout = stdout;
-        this.stderr = stderr;
-    }
-}
-function $(strings, ...values) {
-    const command = strings.reduce((acc, str, i) => {
-        return acc + str + (values[i] || "");
-    }, "");
-    let envVars = {};
-    const execute = async (options = {}) => {
-        try {
-            const execOptions = {
-                shell: true,
-                maxBuffer: 10 * 1024 * 1024,
-            };
-            if (Object.keys(envVars).length > 0) {
-                execOptions.env = { ...process.env, ...envVars };
-            }
-            const { stdout, stderr } = await execAsync(command, execOptions);
-            return {
-                stdout: stdout?.toString() || "",
-                stderr: stderr?.toString() || "",
-                exitCode: 0,
-            };
-        }
-        catch (error) {
-            const code = error.code || 1;
-            const stdout = error.stdout?.toString() || "";
-            const stderr = error.stderr?.toString() || error.message || "";
-            throw new ShellError(`Command failed: ${command}`, code, stdout, stderr);
-        }
-    };
-    let executed = false;
-    let resultPromise = null;
-    const lazyPromise = {
-        then(onFulfilled, onRejected) {
-            if (!executed) {
-                executed = true;
-                resultPromise = execute();
-            }
-            return resultPromise.then(onFulfilled, onRejected);
-        },
-        catch(onRejected) {
-            return this.then(undefined, onRejected);
-        },
-        finally(onFinally) {
-            return this.then((value) => {
-                onFinally?.();
-                return value;
-            }, (reason) => {
-                onFinally?.();
-                throw reason;
-            });
-        },
-        quiet() {
-            return execute({ quiet: true });
-        },
-        env(vars) {
-            envVars = vars;
-            return this;
-        },
-        [Symbol.toStringTag]: "ShellPromise",
-    };
-    return lazyPromise;
-}
-async function detectPackageManager() {
-    try {
-        await $ `bun --version`.quiet();
-        return "bun";
-    }
-    catch {
-        try {
-            await $ `npm --version`.quiet();
-            return "npm";
-        }
-        catch {
-            return null;
-        }
-    }
-}
-export { ShellError, detectPackageManager };
-const generateReferenceId = (metadata) => {
-    const input = `${metadata.packageName}@${metadata.packageVersion}:${metadata.filePath}`;
-    return createHash("sha256").update(input).digest("base64url");
-};
-export const ReferenceManager = () => {
-    const references = {};
-    const urlToIds = {};
-    const set = (id, metadata) => {
-        references[id] = metadata;
-        if (metadata.url) {
-            if (!urlToIds[metadata.url]) {
-                urlToIds[metadata.url] = [];
-            }
-            const ids = urlToIds[metadata.url];
-            if (ids && !ids.includes(id)) {
-                ids.push(id);
-            }
-        }
-    };
-    const clear = () => {
-        Object.keys(references).forEach((key) => delete references[key]);
-        Object.keys(urlToIds).forEach((key) => delete urlToIds[key]);
-    };
-    return {
-        generateId: generateReferenceId,
-        get: (id) => references[id],
-        set,
-        has: (id) => id in references,
-        clear,
-        size: () => Object.keys(references).length,
-        getIdsByUrl: (url) => urlToIds[url] || [],
-        createReference: (id, metadata) => ({
-            id,
-            resourceType: metadata.resourceType,
-        }),
-        getAllReferences: () => references,
-    };
-};
-const isValidFileEntry = (entry) => {
-    if (!entry || typeof entry !== "object")
-        return false;
-    if (!entry.filename || typeof entry.filename !== "string")
-        return false;
-    if (!entry.resourceType || typeof entry.resourceType !== "string")
-        return false;
-    if (!entry.id || typeof entry.id !== "string")
-        return false;
-    const optionalStringFields = ["url", "version", "kind", "type"];
-    for (const field of optionalStringFields) {
-        if (entry[field] !== undefined && typeof entry[field] !== "string") {
-            return false;
-        }
-    }
-    return true;
-};
-const isValidIndexFile = (data) => {
-    if (!data || typeof data !== "object")
-        return false;
-    if (!data["index-version"] || typeof data["index-version"] !== "number")
-        return false;
-    if (!Array.isArray(data.files))
-        return false;
-    return data.files.every((file) => isValidFileEntry(file));
-};
-const parseIndex = (content, filePath) => {
-    try {
-        const data = JSON.parse(content);
-        if (!isValidIndexFile(data)) {
-            return null;
-        }
-        return data;
-    }
-    catch {
-        return null;
-    }
-};
-const fileExists = async (filePath) => {
-    try {
-        await fs.access(filePath);
-        return true;
-    }
-    catch {
-        return false;
-    }
-};
-const ensureDir = async (dirPath) => {
-    try {
-        await fs.mkdir(dirPath, { recursive: true });
-    }
-    catch {
-    }
-};
-const isFhirPackage = async (dirPath) => {
-    const indexPath = path.join(dirPath, ".index.json");
-    return fileExists(indexPath);
-};
-const createCache = () => {
-    const referenceManager = ReferenceManager();
-    return {
-        entries: {},
-        packages: {},
-        references: {},
-        referenceManager,
-    };
-};
-const computePackageLockHash = async (workingDir) => {
-    try {
-        const packageLockPath = path.join(workingDir, "package-lock.json");
-        try {
-            const content = await fs.readFile(packageLockPath, "utf-8");
-            return createHash("sha256").update(content).digest("hex");
-        }
-        catch {
-            const bunLockPath = path.join(workingDir, "bun.lock");
-            const content = await fs.readFile(bunLockPath, "utf-8");
-            return createHash("sha256").update(content).digest("hex");
-        }
-    }
-    catch {
-        return null;
-    }
-};
-const saveCacheToDisk = async (cache, cacheDir, workingDir) => {
-    const packageLockHash = await computePackageLockHash(workingDir);
-    const cacheData = {
-        entries: cache.entries,
-        packages: cache.packages,
-        references: cache.referenceManager.getAllReferences(),
-        packageLockHash: packageLockHash || undefined,
-    };
-    const cachePath = path.join(cacheDir, "index.json");
-    await fs.writeFile(cachePath, JSON.stringify(cacheData, null, 2));
-};
-const loadCacheFromDisk = async (cacheDir) => {
-    try {
-        const cachePath = path.join(cacheDir, "index.json");
-        const content = await fs.readFile(cachePath, "utf-8");
-        return JSON.parse(content);
-    }
-    catch {
-        return null;
-    }
-};
-const installPackages = async (packages, workingDir, registry) => {
-    await ensureDir(workingDir);
-    const packageJsonPath = path.join(workingDir, "package.json");
-    if (!(await fileExists(packageJsonPath))) {
-        const minimalPackageJson = {
-            name: "fhir-canonical-manager-workspace",
-            version: "1.0.0",
-            private: true,
-            dependencies: {},
-        };
-        await fs.writeFile(packageJsonPath, JSON.stringify(minimalPackageJson, null, 2));
-    }
-    const packageManager = await detectPackageManager();
-    if (!packageManager) {
-        throw new Error("No package manager found. Please install npm or bun.");
-    }
-    for (const pkg of packages) {
-        try {
-            if (packageManager === "bun") {
-                const env = {
-                    HOME: workingDir,
-                    NPM_CONFIG_USERCONFIG: "/dev/null",
-                };
-                const cmd = registry
-                    ? `cd ${workingDir} && bun add ${pkg} --registry ${registry}`
-                    : `cd ${workingDir} && bun add ${pkg}`;
-                await $ `${cmd}`.env(env);
-            }
-            else {
-                const cmd = registry
-                    ? `cd ${workingDir} && npm add ${pkg} --registry ${registry}`
-                    : `cd ${workingDir} && npm add ${pkg}`;
-                await $ `${cmd}`;
-            }
-        }
-        catch (err) {
-            console.error(`Failed to install package ${pkg}:`, err);
-            throw err;
-        }
-    }
-};
-const processIndex = async (basePath, packageJson, cache) => {
-    const indexPath = path.join(basePath, ".index.json");
-    try {
-        const indexContent = await fs.readFile(indexPath, "utf-8");
-        const index = parseIndex(indexContent, indexPath);
-        if (!index)
-            return;
-        for (const file of index.files) {
-            if (!file.url)
-                continue;
-            const filePath = path.join(basePath, file.filename);
-            const id = cache.referenceManager.generateId({
-                packageName: packageJson.name,
-                packageVersion: packageJson.version,
-                filePath,
-            });
-            cache.referenceManager.set(id, {
-                packageName: packageJson.name,
-                packageVersion: packageJson.version,
-                filePath,
-                resourceType: file.resourceType,
-                url: file.url,
-                version: file.version,
-            });
-            const entry = {
-                id,
-                resourceType: file.resourceType,
-                indexVersion: index["index-version"],
-                url: file.url,
-                version: file.version,
-                kind: file.kind,
-                type: file.type,
-                package: {
-                    name: packageJson.name,
-                    version: packageJson.version,
-                },
-            };
-            if (!cache.entries[file.url]) {
-                cache.entries[file.url] = [];
-            }
-            const entries = cache.entries[file.url];
-            if (entries) {
-                entries.push(entry);
-            }
-        }
-    }
-    catch {
-    }
-};
-const scanPackage = async (packagePath, cache) => {
-    try {
-        const packageJsonPath = path.join(packagePath, "package.json");
-        const packageJsonContent = await fs.readFile(packageJsonPath, "utf-8");
-        const packageJson = JSON.parse(packageJsonContent);
-        const packageInfo = {
-            id: { name: packageJson.name, version: packageJson.version },
-            path: packagePath,
-            canonical: packageJson.canonical,
-            fhirVersions: packageJson.fhirVersions,
-        };
-        cache.packages[packageJson.name] = packageInfo;
-        await processIndex(packagePath, packageJson, cache);
-        const examplesPath = path.join(packagePath, "examples");
-        if (await fileExists(path.join(examplesPath, ".index.json"))) {
-            await processIndex(examplesPath, packageJson, cache);
-        }
-    }
-    catch {
-    }
-};
-const scanDirectory = async (dirPath, cache) => {
-    try {
-        const entries = await fs.readdir(dirPath, { withFileTypes: true });
-        for (const entry of entries) {
-            if (!entry.isDirectory())
-                continue;
-            const fullPath = path.join(dirPath, entry.name);
-            if (entry.name.startsWith("@")) {
-                const scopedEntries = await fs.readdir(fullPath, {
-                    withFileTypes: true,
-                });
-                for (const scopedEntry of scopedEntries) {
-                    if (!scopedEntry.isDirectory())
-                        continue;
-                    const scopedPath = path.join(fullPath, scopedEntry.name);
-                    if (await isFhirPackage(scopedPath)) {
-                        await scanPackage(scopedPath, cache);
-                    }
-                }
-            }
-            else if (await isFhirPackage(fullPath)) {
-                await scanPackage(fullPath, cache);
-            }
-        }
-    }
-    catch {
-    }
-};
-const resolveWithContext = async (url, context, cache, resolveEntry) => {
-    if (context.package) {
-        try {
-            return await resolveEntry(url, {
-                package: context.package.name,
-                version: context.package.version,
-            });
-        }
-        catch {
-        }
-    }
-    return null;
-};
-const DEFAULT_REGISTRY = "https://fs.get-ig.org/pkgs/";
-export const CanonicalManager = (config) => {
-    const { packages, workingDir } = config;
-    const registry = config.registry
-        ? config.registry.endsWith('/') ? config.registry : `${config.registry}/`
-        : DEFAULT_REGISTRY;
-    const nodeModulesPath = path.join(workingDir, "node_modules");
-    const cacheDir = path.join(workingDir, ".fcm", "cache");
-    let cache = createCache();
-    let initialized = false;
-    const ensureInitialized = () => {
-        if (!initialized) {
-            throw new Error("CanonicalManager not initialized. Call init() first.");
-        }
-    };
-    const init = async () => {
-        if (initialized)
-            return;
-        await ensureDir(workingDir);
-        await ensureDir(cacheDir);
-        const currentPackageLockHash = await computePackageLockHash(workingDir);
-        const cachedData = await loadCacheFromDisk(cacheDir);
-        const cacheValid = cachedData &&
-            cachedData.packageLockHash === currentPackageLockHash &&
-            currentPackageLockHash !== null;
-        if (cacheValid) {
-            cache.entries = cachedData.entries;
-            cache.packages = cachedData.packages;
-            Object.entries(cachedData.references).forEach(([id, metadata]) => {
-                cache.referenceManager.set(id, metadata);
-            });
-        }
-        else {
-            if (cachedData && cachedData.packageLockHash !== currentPackageLockHash) {
-                console.log("Package dependencies have changed, rebuilding index...");
-            }
-            await installPackages(packages, workingDir, registry);
-            cache = createCache();
-            await scanDirectory(nodeModulesPath, cache);
-            await saveCacheToDisk(cache, cacheDir, workingDir);
-        }
-        initialized = true;
-    };
-    const destroy = async () => {
-        cache.entries = {};
-        cache.packages = {};
-        cache.referenceManager.clear();
-        initialized = false;
-    };
-    const getPackages = async () => {
-        ensureInitialized();
-        return Object.values(cache.packages).map((p) => p.id);
-    };
-    const resolveEntry = async (canonicalUrl, options) => {
-        ensureInitialized();
-        if (options?.sourceContext) {
-            const contextResolved = await resolveWithContext(canonicalUrl, options.sourceContext, cache, resolveEntry);
-            if (contextResolved) {
-                return contextResolved;
-            }
-        }
-        const entries = cache.entries[canonicalUrl] || [];
-        if (entries.length === 0) {
-            throw new Error(`Cannot resolve canonical URL: ${canonicalUrl}`);
-        }
-        let filtered = [...entries];
-        if (options?.package) {
-            filtered = filtered.filter((e) => e.package?.name === options.package);
-        }
-        if (options?.version) {
-            filtered = filtered.filter((e) => e.version === options.version);
-        }
-        if (filtered.length === 0) {
-            throw new Error(`No matching resource found for ${canonicalUrl} with given options`);
-        }
-        return filtered[0];
-    };
-    const resolve = async (canonicalUrl, options) => {
-        const entry = await resolveEntry(canonicalUrl, options);
-        return read(entry);
-    };
-    const read = async (reference) => {
-        ensureInitialized();
-        const metadata = cache.referenceManager.get(reference.id);
-        if (!metadata) {
-            throw new Error(`Invalid reference ID: ${reference.id}`);
-        }
-        try {
-            const content = await fs.readFile(metadata.filePath, "utf-8");
-            const resource = JSON.parse(content);
-            return {
-                ...resource,
-                id: reference.id,
-                resourceType: reference.resourceType,
-            };
-        }
-        catch (err) {
-            throw new Error(`Failed to read resource: ${err}`);
-        }
-    };
-    const searchEntries = async (params) => {
-        ensureInitialized();
-        let results = [];
-        if (params.url) {
-            results = cache.entries[params.url] || [];
-        }
-        else {
-            for (const entries of Object.values(cache.entries)) {
-                results.push(...entries);
-            }
-        }
-        if (params.kind !== undefined) {
-            results = results.filter((e) => e.kind === params.kind);
-        }
-        if (params.type !== undefined) {
-            results = results.filter((e) => e.type === params.type);
-        }
-        if (params.version !== undefined) {
-            results = results.filter((e) => e.version === params.version);
-        }
-        if (params.package) {
-            const pkg = params.package;
-            results = results.filter((e) => e.package?.name === pkg.name && e.package?.version === pkg.version);
-        }
-        return results;
-    };
-    const search = async (params) => {
-        const entries = await searchEntries(params);
-        const resources = await Promise.all(entries.map((entry) => read(entry)));
-        return resources;
-    };
-    const smartSearch = async (searchTerms, filters) => {
-        ensureInitialized();
-        let results = await searchEntries({
-            kind: filters?.kind,
-            package: filters?.package,
-        });
-        if (filters?.resourceType) {
-            results = results.filter(entry => entry.resourceType === filters.resourceType);
-        }
-        if (filters?.type) {
-            results = results.filter(entry => entry.type === filters.type);
-        }
-        if (searchTerms.length > 0) {
-            const terms = searchTerms.map(t => t.toLowerCase());
-            results = results.filter(entry => {
-                if (!entry.url)
-                    return false;
-                const urlLower = entry.url.toLowerCase();
-                const fullText = [
-                    urlLower,
-                    entry.type?.toLowerCase() || '',
-                    entry.resourceType?.toLowerCase() || ''
-                ].join(' ');
-                return terms.every(term => {
-                    const allParts = fullText.split(/[\/\-_\.\s]+/);
-                    const directMatch = allParts.some(part => part.startsWith(term));
-                    if (directMatch)
-                        return true;
-                    const expandedTerms = {
-                        'str': ['structure'],
-                        'struct': ['structure'],
-                        'def': ['definition'],
-                        'pati': ['patient'],
-                        'obs': ['observation'],
-                        'org': ['organization'],
-                        'pract': ['practitioner'],
-                        'med': ['medication', 'medicinal'],
-                        'req': ['request'],
-                        'resp': ['response'],
-                        'ref': ['reference'],
-                        'val': ['value'],
-                        'code': ['codesystem', 'code'],
-                        'cs': ['codesystem'],
-                        'vs': ['valueset'],
-                        'sd': ['structuredefinition'],
-                    };
-                    const expansions = expandedTerms[term] || [];
-                    for (const expansion of expansions) {
-                        if (allParts.some(part => part.startsWith(expansion))) {
-                            return true;
-                        }
-                    }
-                    return fullText.includes(term);
-                });
-            });
-        }
-        return results;
-    };
-    return {
-        init,
-        destroy,
-        packages: getPackages,
-        resolveEntry,
-        resolve,
-        read,
-        searchEntries,
-        search,
-        smartSearch,
-    };
-};
-export default CanonicalManager;
+export * from './types';
+export { createReferenceManager, ReferenceManagerFactory as ReferenceManager } from './reference';
+export { CanonicalManager, createCanonicalManager } from './manager';
+import { createCanonicalManager } from './manager';
+export default createCanonicalManager;
 //# sourceMappingURL=index.js.map

package/dist/index.js.map

@@ -1 +1 @@
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+{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAMA,cAAc,SAAS,CAAC;AAGxB,OAAO,EAAE,sBAAsB,EAAE,uBAAuB,IAAI,gBAAgB,EAAE,MAAM,aAAa,CAAC;AAIlG,OAAO,EAAE,gBAAgB,EAAE,sBAAsB,EAAE,MAAM,WAAW,CAAC;AAMrE,OAAO,EAAE,sBAAsB,EAAE,MAAM,WAAW,CAAC;AACnD,eAAe,sBAAsB,CAAC"}

package/dist/manager/canonical.d.ts

@@ -0,0 +1,3 @@
+import type { Config, CanonicalManager } from '../types';
+export declare const createCanonicalManager: (config: Config) => CanonicalManager;
+//# sourceMappingURL=canonical.d.ts.map

package/dist/manager/canonical.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"canonical.d.ts","sourceRoot":"","sources":["../../src/manager/canonical.ts"],"names":[],"mappings":"AAMA,OAAO,KAAK,EACV,MAAM,EACN,gBAAgB,EAOjB,MAAM,UAAU,CAAC;AAelB,eAAO,MAAM,sBAAsB,GAAI,QAAQ,MAAM,KAAG,gBAmTvD,CAAC"}