@atomic-ehr/fhir-canonical-manager 0.0.15 → 0.0.16

package/dist/manager/package-spec.js

@@ -0,0 +1,28 @@
+import * as Path from "node:path";
+export const isPathSpec = (spec) => {
+    return spec.startsWith("./") || spec.startsWith("../") || Path.isAbsolute(spec);
+};
+export const normalizePackageSpec = (spec) => {
+    if (isPathSpec(spec)) {
+        return Path.resolve(spec);
+    }
+    return spec;
+};
+export const parsePackageRef = (pkgRef) => {
+    const trimmed = pkgRef.trim();
+    if (!trimmed) {
+        throw new Error(`Invalid FHIR package meta: ${pkgRef}`);
+    }
+    const atIndex = trimmed.lastIndexOf("@");
+    if (atIndex > 0) {
+        return {
+            name: trimmed.slice(0, atIndex),
+            version: trimmed.slice(atIndex + 1) || "latest",
+        };
+    }
+    return {
+        name: trimmed,
+        version: "latest",
+    };
+};
+//# sourceMappingURL=package-spec.js.map

package/dist/manager/package-spec.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"package-spec.js","sourceRoot":"","sources":["../../src/manager/package-spec.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,IAAI,MAAM,WAAW,CAAC;AAGlC,MAAM,CAAC,MAAM,UAAU,GAAG,CAAC,IAAY,EAAW,EAAE;IAChD,OAAO,IAAI,CAAC,UAAU,CAAC,IAAI,CAAC,IAAI,IAAI,CAAC,UAAU,CAAC,KAAK,CAAC,IAAI,IAAI,CAAC,UAAU,CAAC,IAAI,CAAC,CAAC;AACpF,CAAC,CAAC;AAEF,MAAM,CAAC,MAAM,oBAAoB,GAAG,CAAC,IAAY,EAAU,EAAE;IACzD,IAAI,UAAU,CAAC,IAAI,CAAC,EAAE,CAAC;QACnB,OAAO,IAAI,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC;IAC9B,CAAC;IACD,OAAO,IAAI,CAAC;AAChB,CAAC,CAAC;AAEF,MAAM,CAAC,MAAM,eAAe,GAAG,CAAC,MAAc,EAAa,EAAE;IACzD,MAAM,OAAO,GAAG,MAAM,CAAC,IAAI,EAAE,CAAC;IAC9B,IAAI,CAAC,OAAO,EAAE,CAAC;QACX,MAAM,IAAI,KAAK,CAAC,8BAA8B,MAAM,EAAE,CAAC,CAAC;IAC5D,CAAC;IACD,MAAM,OAAO,GAAG,OAAO,CAAC,WAAW,CAAC,GAAG,CAAC,CAAC;IACzC,IAAI,OAAO,GAAG,CAAC,EAAE,CAAC;QACd,OAAO;YACH,IAAI,EAAE,OAAO,CAAC,KAAK,CAAC,CAAC,EAAE,OAAO,CAAC;YAC/B,OAAO,EAAE,OAAO,CAAC,KAAK,CAAC,OAAO,GAAG,CAAC,CAAC,IAAI,QAAQ;SAClD,CAAC;IACN,CAAC;IACD,OAAO;QACH,IAAI,EAAE,OAAO;QACb,OAAO,EAAE,QAAQ;KACpB,CAAC;AACN,CAAC,CAAC"}

package/dist/package.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"package.d.ts","sourceRoot":"","sources":["../src/package.ts"],"names":[],"mappings":"AAaA,MAAM,MAAM,cAAc,GAAG,KAAK,GAAG,KAAK,CAAC;AAE3C,eAAO,MAAM,oBAAoB,QAAa,OAAO,CAAC,cAAc,GAAG,SAAS,CAY/E,CAAC;AAeF,eAAO,MAAM,eAAe,GAAU,UAAU,MAAM,EAAE,EAAE,KAAK,MAAM,EAAE,WAAW,MAAM,KAAG,OAAO,CAAC,IAAI,CAoCtG,CAAC"}
+{"version":3,"file":"package.d.ts","sourceRoot":"","sources":["../src/package.ts"],"names":[],"mappings":"AAaA,MAAM,MAAM,cAAc,GAAG,KAAK,GAAG,KAAK,CAAC;AAgB3C,eAAO,MAAM,oBAAoB,QAAa,OAAO,CAAC,cAAc,GAAG,SAAS,CAY/E,CAAC;AAeF,eAAO,MAAM,eAAe,GAAU,UAAU,MAAM,EAAE,EAAE,KAAK,MAAM,EAAE,WAAW,MAAM,KAAG,OAAO,CAAC,IAAI,CA8CtG,CAAC"}

package/dist/package.js

@@ -4,6 +4,18 @@ import * as Path from "node:path";
 import { promisify } from "node:util";
 import { ensureDir, fileExists } from "./fs/index.js";
 const execAsync = promisify(exec);
+const isValidPackageRef = (pkg) => {
+    if (pkg.startsWith("http://") || pkg.startsWith("https://")) {
+        return true;
+    }
+    if (pkg.startsWith("/") || pkg.startsWith("./") || pkg.startsWith("../")) {
+        return /^[a-zA-Z0-9_./@-]+$/.test(pkg);
+    }
+    return /^(@[a-zA-Z0-9_-]+\/)?[a-zA-Z0-9._-]+(@[a-zA-Z0-9._-]+)?$/.test(pkg);
+};
+const shellEscape = (str) => {
+    return str.replace(/'/g, "'\\''");
+};
 export const detectPackageManager = async () => {
     try {
         await execAsync("bun --version");
@@ -33,28 +45,36 @@ const ensurePackageJson = async (pwd) => {
 };
 export const installPackages = async (packages, pwd, registry) => {
     await ensureDir(pwd);
-    ensurePackageJson(pwd);
+    await ensurePackageJson(pwd);
     const packageManager = await detectPackageManager();
     if (!packageManager)
         throw new Error("No package manager found. Please install bun or npm.");
     for (const pkg of packages) {
+        if (!isValidPackageRef(pkg)) {
+            throw new Error(`Invalid package reference: ${pkg}`);
+        }
         try {
+            const safePkg = shellEscape(pkg);
+            const safePwd = shellEscape(pwd);
+            const safeRegistry = registry ? shellEscape(registry) : undefined;
             if (packageManager === "bun") {
                 const env = {
                     ...process.env,
                     HOME: pwd,
                     NPM_CONFIG_USERCONFIG: "/dev/null",
                 };
-                const cmd = registry
-                    ? `bun add ${pkg} --cwd='${pwd}' --registry='${registry}'`
-                    : `bun add --cwd='${pwd}' ${pkg}`;
+                const cmd = safeRegistry
+                    ? `bun add '${safePkg}' --cwd='${safePwd}' --registry='${safeRegistry}'`
+                    : `bun add --cwd='${safePwd}' '${safePkg}'`;
                 await execAsync(cmd, {
                     env,
                     maxBuffer: 10 * 1024 * 1024,
                 });
             }
             else {
-                const cmd = registry ? `cd ${pwd} && npm add ${pkg} --registry=${registry}` : `npm add ${pkg}`;
+                const cmd = safeRegistry
+                    ? `cd '${safePwd}' && npm add '${safePkg}' --registry='${safeRegistry}'`
+                    : `cd '${safePwd}' && npm add '${safePkg}'`;
                 await execAsync(cmd, {
                     maxBuffer: 10 * 1024 * 1024,
                 });

package/dist/package.js.map

@@ -1 +1 @@
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+{"version":3,"file":"package.js","sourceRoot":"","sources":["../src/package.ts"],"names":[],"mappings":"AAKA,OAAO,EAAE,IAAI,EAAE,MAAM,oBAAoB,CAAC;AAC1C,OAAO,KAAK,GAAG,MAAM,kBAAkB,CAAC;AACxC,OAAO,KAAK,IAAI,MAAM,WAAW,CAAC;AAClC,OAAO,EAAE,SAAS,EAAE,MAAM,WAAW,CAAC;AACtC,OAAO,EAAE,SAAS,EAAE,UAAU,EAAE,MAAM,eAAe,CAAC;AAEtD,MAAM,SAAS,GAAG,SAAS,CAAC,IAAI,CAAC,CAAC;AAIlC,MAAM,iBAAiB,GAAG,CAAC,GAAW,EAAW,EAAE;IAC/C,IAAI,GAAG,CAAC,UAAU,CAAC,SAAS,CAAC,IAAI,GAAG,CAAC,UAAU,CAAC,UAAU,CAAC,EAAE,CAAC;QAC1D,OAAO,IAAI,CAAC;IAChB,CAAC;IACD,IAAI,GAAG,CAAC,UAAU,CAAC,GAAG,CAAC,IAAI,GAAG,CAAC,UAAU,CAAC,IAAI,CAAC,IAAI,GAAG,CAAC,UAAU,CAAC,KAAK,CAAC,EAAE,CAAC;QACvE,OAAO,qBAAqB,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;IAC3C,CAAC;IACD,OAAO,0DAA0D,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;AAChF,CAAC,CAAC;AAEF,MAAM,WAAW,GAAG,CAAC,GAAW,EAAU,EAAE;IACxC,OAAO,GAAG,CAAC,OAAO,CAAC,IAAI,EAAE,OAAO,CAAC,CAAC;AACtC,CAAC,CAAC;AAEF,MAAM,CAAC,MAAM,oBAAoB,GAAG,KAAK,IAAyC,EAAE;IAChF,IAAI,CAAC;QACD,MAAM,SAAS,CAAC,eAAe,CAAC,CAAC;QACjC,OAAO,KAAK,CAAC;IACjB,CAAC;IAAC,MAAM,CAAC;QACL,IAAI,CAAC;YACD,MAAM,SAAS,CAAC,eAAe,CAAC,CAAC;YACjC,OAAO,KAAK,CAAC;QACjB,CAAC;QAAC,MAAM,CAAC;YACL,OAAO;QACX,CAAC;IACL,CAAC;AACL,CAAC,CAAC;AAEF,MAAM,iBAAiB,GAAG,KAAK,EAAE,GAAW,EAAE,EAAE;IAC5C,MAAM,eAAe,GAAG,IAAI,CAAC,IAAI,CAAC,GAAG,EAAE,cAAc,CAAC,CAAC;IACvD,IAAI,CAAC,CAAC,MAAM,UAAU,CAAC,eAAe,CAAC,CAAC,EAAE,CAAC;QACvC,MAAM,kBAAkB,GAAG;YACvB,IAAI,EAAE,kCAAkC;YACxC,OAAO,EAAE,OAAO;YAChB,OAAO,EAAE,IAAI;YACb,YAAY,EAAE,EAAE;SACnB,CAAC;QACF,MAAM,GAAG,CAAC,SAAS,CAAC,eAAe,EAAE,IAAI,CAAC,SAAS,CAAC,kBAAkB,EAAE,IAAI,EAAE,CAAC,CAAC,CAAC,CAAC;IACtF,CAAC;AACL,CAAC,CAAC;AAEF,MAAM,CAAC,MAAM,eAAe,GAAG,KAAK,EAAE,QAAkB,EAAE,GAAW,EAAE,QAAiB,EAAiB,EAAE;IACvG,MAAM,SAAS,CAAC,GAAG,CAAC,CAAC;IACrB,MAAM,iBAAiB,CAAC,GAAG,CAAC,CAAC;IAE7B,MAAM,cAAc,GAAG,MAAM,oBAAoB,EAAE,CAAC;IACpD,IAAI,CAAC,cAAc;QAAE,MAAM,IAAI,KAAK,CAAC,sDAAsD,CAAC,CAAC;IAE7F,KAAK,MAAM,GAAG,IAAI,QAAQ,EAAE,CAAC;QACzB,IAAI,CAAC,iBAAiB,CAAC,GAAG,CAAC,EAAE,CAAC;YAC1B,MAAM,IAAI,KAAK,CAAC,8BAA8B,GAAG,EAAE,CAAC,CAAC;QACzD,CAAC;QAED,IAAI,CAAC;YACD,MAAM,OAAO,GAAG,WAAW,CAAC,GAAG,CAAC,CAAC;YACjC,MAAM,OAAO,GAAG,WAAW,CAAC,GAAG,CAAC,CAAC;YACjC,MAAM,YAAY,GAAG,QAAQ,CAAC,CAAC,CAAC,WAAW,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,SAAS,CAAC;YAElE,IAAI,cAAc,KAAK,KAAK,EAAE,CAAC;gBAE3B,MAAM,GAAG,GAAG;oBACR,GAAG,OAAO,CAAC,GAAG;oBACd,IAAI,EAAE,GAAG;oBACT,qBAAqB,EAAE,WAAW;iBACrC,CAAC;gBAEF,MAAM,GAAG,GAAG,YAAY;oBACpB,CAAC,CAAC,YAAY,OAAO,YAAY,OAAO,iBAAiB,YAAY,GAAG;oBACxE,CAAC,CAAC,kBAAkB,OAAO,MAAM,OAAO,GAAG,CAAC;gBAChD,MAAM,SAAS,CAAC,GAAG,EAAE;oBACjB,GAAG;oBACH,SAAS,EAAE,EAAE,GAAG,IAAI,GAAG,IAAI;iBAC9B,CAAC,CAAC;YACP,CAAC;iBAAM,CAAC;gBAEJ,MAAM,GAAG,GAAG,YAAY;oBACpB,CAAC,CAAC,OAAO,OAAO,iBAAiB,OAAO,iBAAiB,YAAY,GAAG;oBACxE,CAAC,CAAC,OAAO,OAAO,iBAAiB,OAAO,GAAG,CAAC;gBAChD,MAAM,SAAS,CAAC,GAAG,EAAE;oBACjB,SAAS,EAAE,EAAE,GAAG,IAAI,GAAG,IAAI;iBAC9B,CAAC,CAAC;YACP,CAAC;QACL,CAAC;QAAC,OAAO,GAAG,EAAE,CAAC;YACX,OAAO,CAAC,KAAK,CAAC,6BAA6B,GAAG,GAAG,EAAE,GAAG,CAAC,CAAC;YACxD,MAAM,GAAG,CAAC;QACd,CAAC;IACL,CAAC;AACL,CAAC,CAAC"}

package/dist/types/core.d.ts

@@ -45,6 +45,15 @@ export interface Config {
     workingDir: string;
     registry?: string;
 }
+export interface TgzPackageConfig {
+    archivePath: string;
+}
+export interface LocalPackageConfig {
+    name: string;
+    version: string;
+    path: string;
+    dependencies?: string[];
+}
 export interface PackageInfo {
     id: PackageId;
     path: string;
@@ -56,6 +65,9 @@ export interface CanonicalManager {
     destroy(): Promise<void>;
     packages(): Promise<PackageId[]>;
     addPackages(...packageNames: string[]): Promise<Record<string, PackageId>>;
+    addTgzPackage(config: TgzPackageConfig): Promise<PackageId>;
+    addLocalPackage(config: LocalPackageConfig): Promise<PackageId>;
+    flushCache(): Promise<void>;
     resolveEntry(canonicalUrl: string, options?: {
         package?: string;
         version?: string;

package/dist/types/core.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"core.d.ts","sourceRoot":"","sources":["../../src/types/core.ts"],"names":[],"mappings":"AAIA,MAAM,WAAW,SAAS;IACtB,EAAE,EAAE,MAAM,CAAC;IACX,YAAY,EAAE,MAAM,CAAC;CACxB;AAED,MAAM,WAAW,SAAS;IACtB,IAAI,EAAE,MAAM,CAAC;IACb,OAAO,EAAE,MAAM,CAAC;CACnB;AAED,MAAM,WAAW,UAAW,SAAQ,SAAS;IACzC,YAAY,EAAE,MAAM,CAAC;IACrB,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,GAAG,CAAC,EAAE,MAAM,CAAC;IACb,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,OAAO,CAAC,EAAE,SAAS,CAAC;CACvB;AAED,MAAM,WAAW,QAAS,SAAQ,SAAS;IACvC,GAAG,CAAC,EAAE,MAAM,CAAC;IACb,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,CAAC,GAAG,EAAE,MAAM,GAAG,GAAG,CAAC;CACtB;AAED,MAAM,WAAW,eAAe;IAE5B,GAAG,EAAE,MAAM,CAAC;IACZ,IAAI,EAAE,MAAM,CAAC;IACb,IAAI,EAAE,MAAM,CAAC;IACb,IAAI,EAAE,MAAM,EAAE,CAAC;IACf,IAAI,EAAE,MAAM,CAAC;IACb,UAAU,EAAE,MAAM,CAAC;IAGnB,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,MAAM,CAAC,EAAE,MAAM,EAAE,CAAC;IAClB,UAAU,CAAC,EAAE,OAAO,CAAC;IACrB,WAAW,CAAC,EAAE,OAAO,CAAC;IACtB,UAAU,CAAC,EAAE,KAAK,CAAC,IAAI,GAAG,IAAI,GAAG,IAAI,GAAG,IAAI,GAAG,IAAI,GAAG,IAAI,GAAG,IAAI,GAAG,IAAI,GAAG,IAAI,CAAC,CAAC;IACjF,QAAQ,CAAC,EAAE,KAAK,CACV,SAAS,GACT,OAAO,GACP,UAAU,GACV,KAAK,GACL,MAAM,GACN,IAAI,GACJ,QAAQ,GACR,OAAO,GACP,OAAO,GACP,MAAM,GACN,YAAY,GACZ,QAAQ,CACb,CAAC;IAGF,CAAC,GAAG,EAAE,MAAM,GAAG,GAAG,CAAC;CACtB;AAED,MAAM,WAAW,aAAa;IAC1B,EAAE,CAAC,EAAE,MAAM,CAAC;IACZ,OAAO,CAAC,EAAE,SAAS,CAAC;IACpB,GAAG,CAAC,EAAE,MAAM,CAAC;IACb,IAAI,CAAC,EAAE,MAAM,CAAC;CACjB;AAED,MAAM,WAAW,MAAM;IACnB,QAAQ,EAAE,MAAM,EAAE,CAAC;IACnB,UAAU,EAAE,MAAM,CAAC;IACnB,QAAQ,CAAC,EAAE,MAAM,CAAC;CACrB;AAED,MAAM,WAAW,gBAAgB;IAE7B,WAAW,EAAE,MAAM,CAAC;CACvB;AAED,MAAM,WAAW,kBAAkB;IAE/B,IAAI,EAAE,MAAM,CAAC;IAEb,OAAO,EAAE,MAAM,CAAC;IAEhB,IAAI,EAAE,MAAM,CAAC;IAEb,YAAY,CAAC,EAAE,MAAM,EAAE,CAAC;CAC3B;AAED,MAAM,WAAW,WAAW;IACxB,EAAE,EAAE,SAAS,CAAC;IACd,IAAI,EAAE,MAAM,CAAC;IACb,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,YAAY,CAAC,EAAE,MAAM,EAAE,CAAC;CAC3B;AAED,MAAM,WAAW,gBAAgB;IAC7B,IAAI,IAAI,OAAO,CAAC,MAAM,CAAC,MAAM,EAAE,SAAS,CAAC,CAAC,CAAC;IAC3C,OAAO,IAAI,OAAO,CAAC,IAAI,CAAC,CAAC;IACzB,QAAQ,IAAI,OAAO,CAAC,SAAS,EAAE,CAAC,CAAC;IACjC,WAAW,CAAC,GAAG,YAAY,EAAE,MAAM,EAAE,GAAG,OAAO,CAAC,MAAM,CAAC,MAAM,EAAE,SAAS,CAAC,CAAC,CAAC;IAC3E,aAAa,CAAC,MAAM,EAAE,gBAAgB,GAAG,OAAO,CAAC,SAAS,CAAC,CAAC;IAC5D,eAAe,CAAC,MAAM,EAAE,kBAAkB,GAAG,OAAO,CAAC,SAAS,CAAC,CAAC;IAChE,UAAU,IAAI,OAAO,CAAC,IAAI,CAAC,CAAC;IAC5B,YAAY,CACR,YAAY,EAAE,MAAM,EACpB,OAAO,CAAC,EAAE;QACN,OAAO,CAAC,EAAE,MAAM,CAAC;QACjB,OAAO,CAAC,EAAE,MAAM,CAAC;QACjB,aAAa,CAAC,EAAE,aAAa,CAAC;KACjC,GACF,OAAO,CAAC,UAAU,CAAC,CAAC;IACvB,OAAO,CACH,YAAY,EAAE,MAAM,EACpB,OAAO,CAAC,EAAE;QACN,OAAO,CAAC,EAAE,MAAM,CAAC;QACjB,OAAO,CAAC,EAAE,MAAM,CAAC;QACjB,aAAa,CAAC,EAAE,aAAa,CAAC;KACjC,GACF,OAAO,CAAC,QAAQ,CAAC,CAAC;IACrB,IAAI,CAAC,SAAS,EAAE,SAAS,GAAG,OAAO,CAAC,QAAQ,CAAC,CAAC;IAC9C,aAAa,CAAC,MAAM,EAAE;QAClB,IAAI,CAAC,EAAE,MAAM,CAAC;QACd,GAAG,CAAC,EAAE,MAAM,CAAC;QACb,IAAI,CAAC,EAAE,MAAM,CAAC;QACd,OAAO,CAAC,EAAE,MAAM,CAAC;QACjB,OAAO,CAAC,EAAE,SAAS,CAAC;KACvB,GAAG,OAAO,CAAC,UAAU,EAAE,CAAC,CAAC;IAC1B,MAAM,CAAC,MAAM,EAAE;QACX,IAAI,CAAC,EAAE,MAAM,CAAC;QACd,GAAG,CAAC,EAAE,MAAM,CAAC;QACb,IAAI,CAAC,EAAE,MAAM,CAAC;QACd,OAAO,CAAC,EAAE,MAAM,CAAC;QACjB,OAAO,CAAC,EAAE,SAAS,CAAC;KACvB,GAAG,OAAO,CAAC,QAAQ,EAAE,CAAC,CAAC;IACxB,WAAW,CACP,WAAW,EAAE,MAAM,EAAE,EACrB,OAAO,CAAC,EAAE;QACN,YAAY,CAAC,EAAE,MAAM,CAAC;QACtB,IAAI,CAAC,EAAE,MAAM,CAAC;QACd,IAAI,CAAC,EAAE,MAAM,CAAC;QACd,OAAO,CAAC,EAAE,SAAS,CAAC;KACvB,GACF,OAAO,CAAC,UAAU,EAAE,CAAC,CAAC;IACzB,8BAA8B,CAAC,YAAY,EAAE,MAAM,GAAG,OAAO,CAAC,eAAe,EAAE,CAAC,CAAC;IACjF,WAAW,CAAC,WAAW,EAAE,MAAM,GAAG,OAAO,CAAC,OAAO,CAAC,CAAC;CACtD"}

package/dist/types/internal.d.ts

@@ -1,3 +1,4 @@
+import type { IndexEntry, PackageInfo } from "./core.js";
 export interface IndexFile {
     "index-version": number;
     files: IndexFileEntry[];
@@ -36,10 +37,11 @@ export interface IndexCache {
     references: Record<string, ReferenceMetadata>;
 }
 export interface CacheData {
-    entries: Record<string, import("./core").IndexEntry[]>;
-    packages: Record<string, import("./core").PackageInfo>;
+    entries: Record<string, IndexEntry[]>;
+    packages: Record<string, PackageInfo>;
     references: Record<string, ReferenceMetadata>;
     packageLockHash?: string;
+    cacheKey?: string;
 }
 export interface ReferenceStore {
     get(id: string): ReferenceMetadata | undefined;

package/dist/types/internal.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"internal.d.ts","sourceRoot":"","sources":["../../src/types/internal.ts"],"names":[],"mappings":"AAIA,MAAM,WAAW,SAAS;IACtB,eAAe,EAAE,MAAM,CAAC;IACxB,KAAK,EAAE,cAAc,EAAE,CAAC;CAC3B;AAED,MAAM,WAAW,cAAc;IAC3B,QAAQ,EAAE,MAAM,CAAC;IACjB,YAAY,EAAE,MAAM,CAAC;IACrB,EAAE,EAAE,MAAM,CAAC;IACX,GAAG,CAAC,EAAE,MAAM,CAAC;IACb,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,IAAI,CAAC,EAAE,MAAM,CAAC;CACjB;AAED,MAAM,WAAW,WAAW;IACxB,IAAI,EAAE,MAAM,CAAC;IACb,OAAO,EAAE,MAAM,CAAC;IAChB,YAAY,CAAC,EAAE,MAAM,EAAE,CAAC;IACxB,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,YAAY,CAAC,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;CACzC;AAED,MAAM,WAAW,iBAAiB;IAC9B,WAAW,EAAE,MAAM,CAAC;IACpB,cAAc,EAAE,MAAM,CAAC;IACvB,QAAQ,EAAE,MAAM,CAAC;IACjB,YAAY,EAAE,MAAM,CAAC;IACrB,GAAG,CAAC,EAAE,MAAM,CAAC;IACb,OAAO,CAAC,EAAE,MAAM,CAAC;CACpB;AAED,MAAM,MAAM,QAAQ,GAAG,MAAM,GAAG;IAAE,QAAQ,CAAC,OAAO,EAAE,OAAO,MAAM,CAAA;CAAE,CAAC;AAEpE,MAAM,WAAW,UAAU;IACvB,OAAO,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,QAAQ,EAAE,UAAU,EAAE,CAAC,CAAC;IACvD,QAAQ,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,QAAQ,EAAE,WAAW,CAAC,CAAC;IACvD,UAAU,EAAE,MAAM,CAAC,MAAM,EAAE,iBAAiB,CAAC,CAAC;CACjD;AAED,MAAM,WAAW,SAAS;IACtB,OAAO,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,QAAQ,EAAE,UAAU,EAAE,CAAC,CAAC;IACvD,QAAQ,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,QAAQ,EAAE,WAAW,CAAC,CAAC;IACvD,UAAU,EAAE,MAAM,CAAC,MAAM,EAAE,iBAAiB,CAAC,CAAC;IAC9C,eAAe,CAAC,EAAE,MAAM,CAAC;CAC5B;AAED,MAAM,WAAW,cAAc;IAC3B,GAAG,CAAC,EAAE,EAAE,MAAM,GAAG,iBAAiB,GAAG,SAAS,CAAC;IAC/C,GAAG,CAAC,EAAE,EAAE,MAAM,EAAE,QAAQ,EAAE,iBAAiB,GAAG,IAAI,CAAC;IACnD,GAAG,CAAC,EAAE,EAAE,MAAM,GAAG,OAAO,CAAC;IACzB,KAAK,IAAI,IAAI,CAAC;IACd,IAAI,IAAI,MAAM,CAAC;CAClB"}
+{"version":3,"file":"internal.d.ts","sourceRoot":"","sources":["../../src/types/internal.ts"],"names":[],"mappings":"AAGA,OAAO,KAAK,EAAE,UAAU,EAAE,WAAW,EAAE,MAAM,WAAW,CAAC;AAEzD,MAAM,WAAW,SAAS;IACtB,eAAe,EAAE,MAAM,CAAC;IACxB,KAAK,EAAE,cAAc,EAAE,CAAC;CAC3B;AAED,MAAM,WAAW,cAAc;IAC3B,QAAQ,EAAE,MAAM,CAAC;IACjB,YAAY,EAAE,MAAM,CAAC;IACrB,EAAE,EAAE,MAAM,CAAC;IACX,GAAG,CAAC,EAAE,MAAM,CAAC;IACb,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,IAAI,CAAC,EAAE,MAAM,CAAC;CACjB;AAED,MAAM,WAAW,WAAW;IACxB,IAAI,EAAE,MAAM,CAAC;IACb,OAAO,EAAE,MAAM,CAAC;IAChB,YAAY,CAAC,EAAE,MAAM,EAAE,CAAC;IACxB,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,YAAY,CAAC,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;CACzC;AAED,MAAM,WAAW,iBAAiB;IAC9B,WAAW,EAAE,MAAM,CAAC;IACpB,cAAc,EAAE,MAAM,CAAC;IACvB,QAAQ,EAAE,MAAM,CAAC;IACjB,YAAY,EAAE,MAAM,CAAC;IACrB,GAAG,CAAC,EAAE,MAAM,CAAC;IACb,OAAO,CAAC,EAAE,MAAM,CAAC;CACpB;AAED,MAAM,MAAM,QAAQ,GAAG,MAAM,GAAG;IAAE,QAAQ,CAAC,OAAO,EAAE,OAAO,MAAM,CAAA;CAAE,CAAC;AAEpE,MAAM,WAAW,UAAU;IACvB,OAAO,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,QAAQ,EAAE,UAAU,EAAE,CAAC,CAAC;IACvD,QAAQ,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,QAAQ,EAAE,WAAW,CAAC,CAAC;IACvD,UAAU,EAAE,MAAM,CAAC,MAAM,EAAE,iBAAiB,CAAC,CAAC;CACjD;AAED,MAAM,WAAW,SAAS;IACtB,OAAO,EAAE,MAAM,CAAC,MAAM,EAAE,UAAU,EAAE,CAAC,CAAC;IACtC,QAAQ,EAAE,MAAM,CAAC,MAAM,EAAE,WAAW,CAAC,CAAC;IACtC,UAAU,EAAE,MAAM,CAAC,MAAM,EAAE,iBAAiB,CAAC,CAAC;IAC9C,eAAe,CAAC,EAAE,MAAM,CAAC;IACzB,QAAQ,CAAC,EAAE,MAAM,CAAC;CACrB;AAED,MAAM,WAAW,cAAc;IAC3B,GAAG,CAAC,EAAE,EAAE,MAAM,GAAG,iBAAiB,GAAG,SAAS,CAAC;IAC/C,GAAG,CAAC,EAAE,EAAE,MAAM,EAAE,QAAQ,EAAE,iBAAiB,GAAG,IAAI,CAAC;IACnD,GAAG,CAAC,EAAE,EAAE,MAAM,GAAG,OAAO,CAAC;IACzB,KAAK,IAAI,IAAI,CAAC;IACd,IAAI,IAAI,MAAM,CAAC;CAClB"}

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@atomic-ehr/fhir-canonical-manager",
-  "version": "0.0.15",
+  "version": "0.0.16",
   "type": "module",
   "main": "./dist/index.js",
   "types": "./dist/index.d.ts",
@@ -18,8 +18,7 @@
     }
   },
   "files": [
-    "dist",
-    "src"
+    "dist"
   ],
   "scripts": {
     "build": "bun run build:clean && bun run build:types",

package/src/cache.ts

@@ -1,59 +0,0 @@
-import { createHash } from "node:crypto";
-import * as afs from "node:fs/promises";
-import * as Path from "node:path";
-import { createReferenceManager, type ReferenceManager } from "./reference.js";
-import type { CacheData, CacheKey, IndexCache } from "./types/index.js";
-
-export interface ExtendedCache extends IndexCache {
-    referenceManager: ReferenceManager;
-}
-
-export const computeCacheKey = (packages: string[]): CacheKey => {
-    const content = JSON.stringify(packages.toSorted());
-    const hash = createHash("sha256").update(content).digest("hex");
-    return hash as CacheKey;
-};
-
-const cacheRecordPathsFromKey = (pwd: string, cacheKey: CacheKey) => {
-    const cacheRecordPath = Path.join(pwd, cacheKey);
-    const npmPackagePath = Path.join(process.cwd(), cacheRecordPath, "node");
-    const npmRootPackageJsonFile = Path.join(npmPackagePath, "package.json");
-    const cacheIndexFile = Path.join(cacheRecordPath, "index.json");
-    return { cacheKey, cacheRecordPath, cacheIndexFile, npmPackagePath, npmRootPackageJsonFile };
-};
-
-export const cacheRecordPaths = (pwd: string, packages: string[]) => {
-    const cacheKey = computeCacheKey(packages);
-    return cacheRecordPathsFromKey(pwd, cacheKey);
-};
-
-export const createCacheRecord = (): ExtendedCache => {
-    return {
-        entries: {},
-        packages: {},
-        references: {},
-        referenceManager: createReferenceManager(),
-    };
-};
-
-export const loadCacheRecordFromDisk = async (pwd: string, cacheKey: CacheKey): Promise<CacheData | undefined> => {
-    try {
-        const { cacheIndexFile } = cacheRecordPathsFromKey(pwd, cacheKey);
-        const content = await afs.readFile(cacheIndexFile, "utf-8");
-        return JSON.parse(content) as CacheData;
-    } catch {
-        return;
-    }
-};
-
-export const saveCacheRecordToDisk = async (cache: ExtendedCache, pwd: string, cacheKey: CacheKey): Promise<void> => {
-    const cacheData: CacheData = {
-        entries: cache.entries,
-        packages: cache.packages,
-        references: cache.referenceManager.getAllReferences(),
-        packageLockHash: cacheKey,
-    };
-    const { cacheIndexFile, cacheRecordPath } = cacheRecordPathsFromKey(pwd, cacheKey);
-    await afs.mkdir(cacheRecordPath, { recursive: true });
-    await afs.writeFile(cacheIndexFile, JSON.stringify(cacheData, null, 2));
-};

package/src/cli/index.ts

@@ -1,181 +0,0 @@
-#!/usr/bin/env node
-
-import * as fs from "node:fs";
-import * as path from "node:path";
-import { fileURLToPath } from "node:url";
-import type { Config } from "../index.js";
-
-// Command handlers
-import { initCommand } from "./init.js";
-import { listCommand } from "./list.js";
-import { resolveCommand } from "./resolve.js";
-import { searchCommand } from "./search.js";
-import { searchParamCommand } from "./searchparam.js";
-
-// Get version from package.json
-const __filename = fileURLToPath(import.meta.url);
-const __dirname = path.dirname(__filename);
-const packageJsonPath = path.join(__dirname, "..", "..", "package.json");
-
-let VERSION = "unknown";
-try {
-    const packageJson = JSON.parse(fs.readFileSync(packageJsonPath, "utf-8"));
-    VERSION = packageJson.version;
-} catch (_error) {
-    // Fallback version if package.json can't be read
-    VERSION = "0.0.3";
-}
-
-function showHelp() {
-    console.log(`
-fcm - FHIR Canonical Manager CLI
-
-Usage: fcm <command> [options]
-
-Commands:
-  init         Initialize FHIR packages in current directory
-  list         List packages or resources
-  search       Search for resources
-  resolve      Get a resource by canonical URL
-  searchparam  Display search parameters for a resource type
-
-Options:
-  --help     Show help
-  --version  Show version
-
-Examples:
-  fcm init hl7.fhir.r4.core
-  fcm list
-  fcm search Patient
-  fcm resolve http://hl7.org/fhir/StructureDefinition/Patient
-  fcm searchparam Patient
-`);
-}
-
-async function main() {
-    const args = process.argv.slice(2);
-    const command = args[0];
-
-    if (!command || command === "--help" || command === "-h") {
-        showHelp();
-        if (process.env.NODE_ENV === "test") {
-            return;
-        }
-        process.exit(0);
-    }
-
-    if (command === "--version" || command === "-v") {
-        console.log(VERSION);
-        if (process.env.NODE_ENV === "test") {
-            return;
-        }
-        process.exit(0);
-    }
-
-    const commands: Record<string, (args: string[]) => Promise<void>> = {
-        init: initCommand,
-        list: listCommand,
-        search: searchCommand,
-        resolve: resolveCommand,
-        searchparam: searchParamCommand,
-    };
-
-    if (!commands[command]) {
-        console.error(`Error: Unknown command '${command}'`);
-        console.error(`Run 'fcm --help' for usage information`);
-        if (process.env.NODE_ENV === "test") {
-            throw new Error(`Unknown command '${command}'`);
-        }
-        process.exit(1);
-    }
-
-    try {
-        await commands[command](args.slice(1));
-    } catch (error) {
-        console.error(`Error: ${error instanceof Error ? error.message : String(error)}`);
-        if (process.env.NODE_ENV === "test") {
-            throw error;
-        }
-        process.exit(1);
-    }
-}
-
-// Export utility functions for commands
-export function parseArgs(args: string[]): {
-    positional: string[];
-    options: Record<string, string | boolean>;
-} {
-    const positional: string[] = [];
-    const options: Record<string, string | boolean> = {};
-
-    for (let i = 0; i < args.length; i++) {
-        const arg = args[i];
-        if (arg?.startsWith("--")) {
-            const key = arg.slice(2);
-            const nextArg = args[i + 1];
-            if (nextArg && !nextArg.startsWith("--")) {
-                options[key] = nextArg;
-                i++;
-            } else {
-                options[key] = true;
-            }
-        } else if (arg?.startsWith("-")) {
-            // Handle short aliases
-            switch (arg) {
-                case "-sd":
-                    options.resourceType = "StructureDefinition";
-                    break;
-                case "-cs":
-                    options.resourceType = "CodeSystem";
-                    break;
-                case "-vs":
-                    options.resourceType = "ValueSet";
-                    break;
-                default: {
-                    // Handle other single-letter flags
-                    const key = arg.slice(1);
-                    const nextArg = args[i + 1];
-                    if (nextArg && !nextArg.startsWith("-")) {
-                        options[key] = nextArg;
-                        i++;
-                    } else {
-                        options[key] = true;
-                    }
-                }
-            }
-        } else if (arg) {
-            positional.push(arg);
-        }
-    }
-
-    return { positional, options };
-}
-
-export async function loadPackageJson(): Promise<any> {
-    const packagePath = path.join(process.cwd(), "package.json");
-    try {
-        if (fs.existsSync(packagePath)) {
-            const content = fs.readFileSync(packagePath, "utf-8");
-            return JSON.parse(content);
-        }
-    } catch (_error) {
-        // Ignore parse errors
-    }
-    return null;
-}
-
-export async function savePackageJson(data: any): Promise<void> {
-    const packagePath = path.join(process.cwd(), "package.json");
-    fs.writeFileSync(packagePath, `${JSON.stringify(data, null, 2)}\n`);
-}
-
-export function getConfigFromPackageJson(packageJson: any): Partial<Config> {
-    const fcm = packageJson?.fcm || {};
-    return {
-        packages: fcm.packages || [],
-        registry: fcm.registry,
-        workingDir: process.cwd(),
-    };
-}
-
-main();

package/src/cli/init.ts

@@ -1,112 +0,0 @@
-import { exec } from "node:child_process";
-import * as path from "node:path";
-import { promisify } from "node:util";
-import { CanonicalManager } from "../index.js";
-import { loadPackageJson, parseArgs, savePackageJson } from "./index.js";
-
-const execAsync = promisify(exec);
-
-export async function initCommand(args: string[]): Promise<void> {
-    const { positional, options } = parseArgs(args);
-    const packages = positional;
-    const registry = options.registry as string | undefined;
-
-    // Load or create package.json
-    let packageJson = await loadPackageJson();
-    const isNewPackageJson = !packageJson;
-
-    if (!packageJson) {
-        // Create minimal package.json
-        packageJson = {
-            name: path.basename(process.cwd()),
-            version: "1.0.0",
-            type: "module",
-        };
-    }
-
-    // Initialize fcm config
-    if (!packageJson.fcm) {
-        packageJson.fcm = {
-            packages: [],
-            registry: registry ? (registry.endsWith("/") ? registry : `${registry}/`) : "https://fs.get-ig.org/pkgs/",
-        };
-    }
-
-    // If no packages specified, use packages from config
-    const packagesToInstall = packages.length > 0 ? packages : packageJson.fcm.packages;
-
-    if (packagesToInstall.length === 0) {
-        console.error("Error: No packages specified");
-        console.error("Usage: fcm init [packages...]");
-        console.error("Example: fcm init hl7.fhir.r4.core hl7.fhir.us.core@5.0.1");
-        if (process.env.NODE_ENV === "test") {
-            throw new Error("No packages specified");
-        }
-        process.exit(1);
-    }
-
-    // Update fcm packages list (merge with existing)
-    const existingPackages = new Set(packageJson.fcm.packages);
-    packagesToInstall.forEach((pkg: string) => {
-        existingPackages.add(pkg);
-    });
-    packageJson.fcm.packages = Array.from(existingPackages);
-
-    // Update registry if provided, ensuring it ends with /
-    if (registry) {
-        packageJson.fcm.registry = registry.endsWith("/") ? registry : `${registry}/`;
-    }
-
-    // Initialize dependencies if not present
-    if (!packageJson.dependencies) {
-        packageJson.dependencies = {};
-    }
-
-    // Save package.json
-    await savePackageJson(packageJson);
-
-    if (isNewPackageJson) {
-        console.log("Created package.json");
-    }
-
-    // Install packages using npm
-    console.log("Installing FHIR packages...");
-
-    for (const pkg of packagesToInstall) {
-        console.log(`Installing ${pkg}...`);
-        try {
-            const command = packageJson.fcm.registry
-                ? `npm install ${pkg} --registry ${packageJson.fcm.registry}`
-                : `npm install ${pkg}`;
-
-            await execAsync(command, {
-                cwd: process.cwd(),
-                maxBuffer: 10 * 1024 * 1024, // 10MB buffer
-            });
-        } catch (error) {
-            console.error(`Failed to install ${pkg}`);
-            throw error;
-        }
-    }
-
-    // Initialize CanonicalManager to build cache
-    console.log("Building package index...");
-    console.log("Registry", packageJson?.fcm?.registry);
-    const manager = CanonicalManager({
-        packages: packageJson.fcm.packages,
-        workingDir: process.cwd(),
-        registry: packageJson.fcm.registry,
-    });
-
-    await manager.init();
-
-    // Show summary
-    const installedPackages = await manager.packages();
-    console.log("\nInstalled packages:");
-    installedPackages.forEach((pkg) => {
-        console.log(`  ${pkg.name}@${pkg.version}`);
-    });
-
-    await manager.destroy();
-    console.log("\nInitialization complete!");
-}

package/src/cli/list.ts

@@ -1,95 +0,0 @@
-import { CanonicalManager } from "../index.js";
-import { getConfigFromPackageJson, loadPackageJson, parseArgs } from "./index.js";
-
-export async function listCommand(args: string[]): Promise<void> {
-    const { positional, options } = parseArgs(args);
-    const packageName = positional[0];
-    const isJson = options.json === true;
-    const typeFilter = options.type as string | undefined;
-
-    // Load config from package.json
-    const packageJson = await loadPackageJson();
-    if (!packageJson?.fcm?.packages || packageJson.fcm.packages.length === 0) {
-        console.error("Error: No FHIR packages configured");
-        console.error("Run 'fcm init' first to initialize packages");
-        if (process.env.NODE_ENV === "test") {
-            throw new Error("No FHIR packages configured");
-        }
-        process.exit(1);
-    }
-
-    const config = getConfigFromPackageJson(packageJson);
-    const manager = CanonicalManager(config as any);
-    await manager.init();
-
-    try {
-        if (!packageName) {
-            // List all packages
-            const packages = await manager.packages();
-
-            if (isJson) {
-                console.log(JSON.stringify(packages, null, 2));
-            } else {
-                console.log("Packages:");
-                packages.forEach((pkg) => {
-                    console.log(`  ${pkg.name}@${pkg.version}`);
-                });
-            }
-        } else {
-            // List resources in a specific package
-            const packages = await manager.packages();
-            const pkg = packages.find((p) => p.name === packageName);
-
-            if (!pkg) {
-                console.error(`Error: Package '${packageName}' not found`);
-                console.error("Available packages:");
-                packages.forEach((p) => {
-                    console.error(`  - ${p.name}`);
-                });
-                if (process.env.NODE_ENV === "test") {
-                    throw new Error(`Package '${packageName}' not found`);
-                }
-                process.exit(1);
-            }
-
-            let resources = await manager.searchEntries({ package: pkg });
-
-            // Apply type filter if specified
-            if (typeFilter) {
-                resources = resources.filter((r) => r.resourceType === typeFilter);
-            }
-
-            if (isJson) {
-                console.log(JSON.stringify(resources, null, 2));
-            } else {
-                console.log(`Resources in ${packageName}:`);
-
-                if (resources.length === 0) {
-                    console.log("  No resources found");
-                } else {
-                    // Group by type
-                    const byType = resources.reduce(
-                        (acc, resource) => {
-                            const type = resource.resourceType || resource.type || "Unknown";
-                            if (!acc[type]) acc[type] = 0;
-                            acc[type]++;
-                            return acc;
-                        },
-                        {} as Record<string, number>,
-                    );
-
-                    // Show summary
-                    Object.entries(byType)
-                        .sort()
-                        .forEach(([type, count]) => {
-                            console.log(`  ${type}: ${count}`);
-                        });
-
-                    console.log(`\nTotal: ${resources.length} resources`);
-                }
-            }
-        }
-    } finally {
-        await manager.destroy();
-    }
-}