@atomic-ehr/codegen 0.0.8 → 0.0.9-canary.20260312182458.1c26a02

package/dist/cli/index.js

@@ -1,11 +1,9 @@
 #!/usr/bin/env node
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y=m&&m.length>0;n.push({name:a,path:[...s,"extension"].join("."),url:l,min:c.min,max:c.max!==void 0?String(c.max):void 0,mustSupport:c.mustSupport,valueTypes:d,subExtensions:m,isComplex:y});},r=(s,a)=>{if(a.extensions)for(let[c,l]of Object.entries(a.extensions))o(s,c,l);if(a.elements)for(let[c,l]of Object.entries(a.elements))r([...s,c],l);};return r([],e),n.length===0?void 0:n};function Ze(t,e,i,n,o){if(!n)return;let r={};for(let s of t.getAllElementKeys(n)){let a=[...i,s],c=t.resolveElementSnapshot(e,a),l=c.type?t.ensureSpecializationCanonicalUrl(c.type):void 0;if(l&&C(e.package_meta,l).shouldSkip){o?.warn(`Skipping field ${a} for ${l} due to skip hack ${C(e.package_meta,l).reason}`);continue}q(t,e,a,c,n[s])?r[s]=V(t,e,a,c):r[s]=H(t,e,a,c,o,n[s]);}return r}function et(t){let e=[];for(let i of Object.values(t))"type"in i&&i.type&&e.push(i.type),"binding"in i&&i.binding&&e.push(i.binding);return e}async function Ce(t,e,i){if(!e.url)throw new Error("ValueSet URL is required");let 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s=`${r.schema.identifier.url}|${r.schema.identifier.package}`,a=ie(r.schema);i[s]??={},i[s][a]??={typeSchema:r.schema,sources:[]},i[s][a].sources.push(r);}let n=[],o={};for(let r of Object.values(i)){let s=Object.values(r).sort((c,l)=>l.sources.length-c.sources.length),a=s[0];if(a&&(n.push(a.typeSchema),s.length>1)){let c=a.typeSchema.identifier.package,l=a.typeSchema.identifier.url;e?.dryWarn(`'${l}' from '${c}'' has ${s.length} versions`),o[c]??={},o[c][l]=s.flatMap(d=>d.sources.map(m=>({typeSchema:d.typeSchema,sourcePackage:m.sourcePackage,sourceCanonical:m.sourceCanonical})));}}return {schemas:n,collisions:o}},Ie=async(t,e)=>{let i=[];for(let n of t.allFs()){let o=x(n.package_meta),r=C(n.package_meta,n.url);if(r.shouldSkip){e?.dryWarn(`Skip ${n.url} from ${o}. 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Set(["code","Coding","CodeableConcept","CodeableReference","Quantity","string","uri","Duration"]);function G(e,n,i,t){if(!i.binding)return;let o=i.binding.strength,r=i.binding.valueSet;if(!r)return;if(!A.has(i.type??"")){t?.dryWarn("#binding",`eld-11: Binding on non-bindable type '${i.type}' (valueSet: ${r})`);return}if(!(o==="required"||o==="extensible"||o==="preferred"))return;let s=_(e,n.package_meta,r);if(!s||s.length===0)return;let c=s.map(l=>l.code).filter(l=>l&&typeof l=="string"&&l.trim().length>0);if(c.length>ce){t?.dryWarn("#largeValueSet",`Value set ${r} has ${c.length} which is more than ${ce} codes, which may cause issues with code generation.`);return}if(c.length!==0)return {isOpen:o!=="required",values:c}}function Ue(e,n,i,t,o){if(!t.binding?.valueSet)return;let r=L(n,i,t),a=P(e,n.package_meta,t.binding.valueSet),s=G(e,n,t,o);return {identifier:r,valueset:a,strength:t.binding.strength,enum:s,dependencies:[a]}}function le(e,n,i){let t=new Set;if(!n.elements)return [];let 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-Examples:`),k(["atomic-codegen typeschema generate hl7.fhir.r4.core@4.0.1 -o schemas.ndjson","atomic-codegen typeschema validate schemas.ndjson","atomic-codegen typeschema merge schema1.ndjson schema2.ndjson -o merged.ndjson"]);return}t.subcommand&&!["generate","validate","merge"].includes(t.subcommand)&&(R(`Unknown typeschema subcommand: ${t.subcommand}
-`),$("Available typeschema subcommands:"),k(["generate    Generate TypeSchema files from FHIR packages","validate    Validate TypeSchema files for correctness and consistency","merge       Merge multiple TypeSchema files into a single file"]),console.log(`
-Use 'atomic-codegen typeschema <subcommand> --help' for more information about a subcommand.`),process.exit(1));}};function lt(t){return t?{debug:0,info:1,warn:2,error:3,silent:4}[t.toLowerCase()]:void 0}async function pt(t){let e=lt(t.logLevel);e===void 0&&(t.debug||t.verbose?e=0:e=1),Y({timestamp:t.debug,level:e});}function dt(){return at(hideBin(process.argv)).scriptName("atomic-codegen").usage("$0 <command> [options]").middleware(pt).command(Fe).option("verbose",{alias:"v",type:"boolean",description:"Enable verbose output",default:false,global:true}).option("debug",{alias:"d",type:"boolean",description:"Enable debug output with detailed logging",default:false,global:true}).option("log-level",{alias:"l",type:"string",choices:["debug","info","warn","error","silent"],description:"Set the log level (default: info)",global:true}).demandCommand(0).middleware(t=>{t._.length===0&&(ee("Welcome to Atomic Codegen!"),console.log("Available commands:"),console.log("  typeschema   Generate, validate and merge TypeSchema files"),console.log(`
+Examples:`),I(["atomic-codegen typeschema generate hl7.fhir.r4.core@4.0.1 -o schemas.ndjson","atomic-codegen typeschema validate schemas.ndjson","atomic-codegen typeschema merge schema1.ndjson schema2.ndjson -o merged.ndjson"]);return}e.subcommand&&!["generate","validate","merge"].includes(e.subcommand)&&(Q.error(`Unknown typeschema subcommand: ${e.subcommand}`),Q.info("Available typeschema subcommands:"),I(["generate    Generate TypeSchema files from FHIR packages","validate    Validate TypeSchema files for correctness and consistency","merge       Merge multiple TypeSchema files into a single file"]),console.log(`
+Use 'atomic-codegen typeschema <subcommand> --help' for more information about a subcommand.`),process.exit(1));}};var j=C({prefix:"cli"});async function cn(e){let n=e.logLevel??(e.debug||e.verbose?"DEBUG":"INFO");j=C({prefix:"cli",level:n});}function ln(){return an(hideBin(process.argv)).scriptName("atomic-codegen").usage("$0 <command> [options]").middleware(cn).command(ve).option("verbose",{alias:"v",type:"boolean",description:"Enable verbose output",default:false,global:true}).option("debug",{alias:"d",type:"boolean",description:"Enable debug output with detailed logging",default:false,global:true}).option("log-level",{alias:"l",type:"string",choices:["DEBUG","INFO","WARN","ERROR","SILENT"],description:"Set the log level (default: INFO)",global:true}).demandCommand(0).middleware(e=>{e._.length===0&&(Z("Welcome to Atomic Codegen!"),console.log("Available commands:"),console.log("  typeschema   Generate, validate and merge TypeSchema files"),console.log(`
 Use 'atomic-codegen <command> --help' for more information about a command.`),console.log(`
 Quick examples:`),console.log("  atomic-codegen typeschema generate hl7.fhir.r4.core@4.0.1 -o schemas.ndjson"),console.log(`
-Use 'atomic-codegen --help' to see all options.`),process.exit(0));}).help().version("0.1.0").example("$0 typeschema generate hl7.fhir.r4.core@4.0.1 -o schemas.ndjson","Generate TypeSchemas from FHIR package").fail((t,e,i)=>{e?R(e.message,e):R(t),R(`
-Use --help for usage information`),process.exit(1);}).wrap(Math.min(120,process.stdout.columns||80))}async function J(){await dt().parseAsync();}import.meta.main&&J().catch(t=>{t("Unexpected error:",t),process.exit(1);});J().catch(t=>{console.error("CLI Error:",t instanceof Error?t.message:t),process.exit(1);});
+Use 'atomic-codegen --help' to see all options.`),process.exit(0));}).help().version("0.1.0").example("$0 typeschema generate hl7.fhir.r4.core@4.0.1 -o schemas.ndjson","Generate TypeSchemas from FHIR package").fail((e,n,i)=>{j.error(n?n.message:e),j.error("Use --help for usage information"),process.exit(1);}).wrap(Math.min(120,process.stdout.columns||80))}async function X(){await ln().parseAsync();}import.meta.main&&X().catch(e=>{j.error(String(e)),process.exit(1);});X().catch(e=>{console.error("CLI Error:",e instanceof Error?e.message:e),process.exit(1);});

package/dist/index.d.ts

@@ -2,90 +2,6 @@ import * as FS from '@atomic-ehr/fhirschema';
 import { FHIRSchema, StructureDefinition as StructureDefinition$1, FHIRSchemaElement } from '@atomic-ehr/fhirschema';
 import { CanonicalManager, PreprocessContext } from '@atomic-ehr/fhir-canonical-manager';
 
-/**
- * CodeGen Logger
- *
- * Clean, colorful logging designed for code generation tools
- */
-declare enum LogLevel {
-    DEBUG = 0,
-    INFO = 1,
-    WARN = 2,
-    ERROR = 3,
-    SILENT = 4
-}
-type LogLevelString = keyof typeof LogLevel;
-interface LogOptions {
-    prefix?: string;
-    timestamp?: boolean;
-    suppressLoggingLevel?: LogLevel[] | "all";
-    /** Minimum log level to display. Messages below this level are suppressed. Default: INFO */
-    level?: LogLevel;
-}
-/**
- * Simple code generation logger with pretty colors and clean formatting
- */
-declare class CodegenLogger {
-    private options;
-    private dryWarnSet;
-    constructor(options?: LogOptions);
-    /**
-     * Check if a message at the given level should be logged
-     */
-    private shouldLog;
-    private static consoleLevelsMap;
-    private formatMessage;
-    private isSuppressed;
-    private tryWriteToConsole;
-    /**
-     * Success message with checkmark
-     */
-    success(message: string): void;
-    /**
-     * Error message with X mark
-     */
-    error(message: string, error?: Error): void;
-    /**
-     * Warning message with warning sign
-     */
-    warn(message: string): void;
-    dryWarn(message: string): void;
-    /**
-     * Info message with info icon
-     */
-    info(message: string): void;
-    /**
-     * Debug message (only shows when log level is DEBUG or verbose is true)
-     */
-    debug(message: string): void;
-    /**
-     * Step message with rocket
-     */
-    step(message: string): void;
-    /**
-     * Progress message with clock
-     */
-    progress(message: string): void;
-    /**
-     * Plain message (no icon, just colored text)
-     */
-    plain(message: string, color?: (str: string) => string): void;
-    /**
-     * Dimmed/gray text for less important info
-     */
-    dim(message: string): void;
-    /**
-     * Create a child logger with a prefix
-     */
-    child(prefix: string): CodegenLogger;
-    /**
-     * Update options
-     */
-    configure(options: Partial<LogOptions>): void;
-    getLevel(): LogLevel;
-    setLevel(level: LogLevel): void;
-}
-
 interface Extension extends Element {
     url: string;
     valueCode?: string;
@@ -752,6 +668,47 @@ interface ValueSet extends DomainResource {
     version?: string;
 }
 
+type LogLevel = "DEBUG" | "INFO" | "WARN" | "ERROR" | "SILENT";
+type LogEntry<T extends string = string> = {
+    level: LogLevel;
+    tag?: T;
+    message: string;
+    suppressed: boolean;
+    prefix: string;
+    timestamp: number;
+};
+type Log<T extends string = string> = {
+    warn: TaggedLogFn<T>;
+    dryWarn: TaggedLogFn<T>;
+    info: TaggedLogFn<T>;
+    error: TaggedLogFn<T>;
+    debug: TaggedLogFn<T>;
+};
+type LogManager<T extends string = string> = Log<T> & {
+    fork(prefix: string, opts?: Partial<LoggerOptions<T>>): LogManager<T>;
+    as<Narrower extends string>(): LogManager<Narrower>;
+    tagCounts(): Readonly<Record<string, number>>;
+    printTagSummary(): void;
+    buffer(): readonly LogEntry<T>[];
+    bufferClear(): void;
+};
+type TaggedLogFn<T extends string> = (...args: [string] | [T, string]) => void;
+type LoggerOptions<T extends string> = {
+    prefix?: string;
+    suppressTags?: T[];
+    level?: LogLevel;
+};
+
+type CodegenTag = "#binding" | "#largeValueSet" | "#fieldTypeNotFound" | "#skipCanonical" | "#duplicateSchema" | "#duplicateCanonical" | "#resolveBase";
+type CodegenLog = Log<CodegenTag>;
+type CodegenLogManager = LogManager<CodegenTag>;
+declare const mkCodegenLogger: (opts?: LoggerOptions<CodegenTag>) => LogManager<CodegenTag>;
+
+/**
+ * A code generation friendly representation of FHIR StructureDefinition and
+ * FHIR Schema designed to simplify SDK resource classes/types generation.
+ */
+
 type Name = string & {
     readonly __brand: unique symbol;
 };
@@ -832,17 +789,18 @@ type ResolutionTree = Record<PkgName, Record<CanonicalUrl, {
     pkg: PackageMeta;
 }[]>>;
 type RegisterConfig = {
-    logger?: CodegenLogger;
+    logger?: CodegenLog;
     focusedPackages?: PackageMeta[];
     /** Custom FHIR package registry URL */
     registry?: string;
 };
+declare const registerFromManager: (manager: ReturnType<typeof CanonicalManager>, { logger, focusedPackages }: RegisterConfig) => Promise<Register>;
 declare const registerFromPackageMetas: (packageMetas: PackageMeta[], conf: RegisterConfig) => Promise<Register>;
 
 type FileSystemWriterOptions = {
     outputDir: string;
     inMemoryOnly?: boolean;
-    logger?: CodegenLogger;
+    logger?: CodegenLog;
     resolveAssets?: (fn: string) => string;
 };
 type WriterOptions = FileSystemWriterOptions & {
@@ -928,6 +886,7 @@ type FileBasedMustacheGeneratorOptions = {
 };
 
 type TypeScriptOptions = {
+    lineWidth?: number;
     /** openResourceTypeSet -- for resource families (Resource, DomainResource) use open set for resourceType field.
      *
      * - when openResourceTypeSet is false: `type Resource = { resourceType: "Resource" | "DomainResource" | "Patient" }`
@@ -935,6 +894,8 @@ type TypeScriptOptions = {
      */
     openResourceTypeSet: boolean;
     primitiveTypeExtension: boolean;
+    extensionGetterDefault?: "flat" | "profile" | "raw";
+    sliceGetterDefault?: "flat" | "raw";
 } & WriterOptions;
 
 /**
@@ -953,8 +914,6 @@ interface APIBuilderOptions {
     throwException: boolean;
     treeShake: TreeShakeConf | undefined;
     promoteLogical: LogicalPromotionConf | undefined;
-    /** Log level for the logger. Default: INFO */
-    logLevel: LogLevel;
     /** Custom FHIR package registry URL (default: https://fs.get-ig.org/pkgs/) */
     registry: string | undefined;
     /** Drop the canonical manager cache */
@@ -991,7 +950,7 @@ declare class APIBuilder {
         manager?: ReturnType<typeof CanonicalManager>;
         register?: Register;
         preprocessPackage?: (context: PreprocessContext) => PreprocessContext;
-        logger?: CodegenLogger;
+        logger?: CodegenLogManager;
     });
     fromPackage(packageName: string, version?: string): APIBuilder;
     fromPackageRef(packageRef: string): APIBuilder;
@@ -1006,7 +965,6 @@ declare class APIBuilder {
      * Set the output directory for all generators
      */
     outputTo(directory: string): APIBuilder;
-    setLogLevel(level: LogLevel | LogLevelString): APIBuilder;
     throwException(enabled?: boolean): APIBuilder;
     cleanOutput(enabled?: boolean): APIBuilder;
     typeSchema(cfg: IrConf): this;
@@ -1023,4 +981,4 @@ declare class APIBuilder {
     private executeGenerators;
 }
 
-export { APIBuilder, type APIBuilderOptions, type CSharpGeneratorOptions, type IrConf, type LocalStructureDefinitionConfig, LogLevel, type LogicalPromotionConf, type TreeShakeConf, type TypeScriptOptions, prettyReport, registerFromPackageMetas };
+export { APIBuilder, type APIBuilderOptions, type CSharpGeneratorOptions, type CodegenLog, type CodegenLogManager, type CodegenTag, type IrConf, type LocalStructureDefinitionConfig, type LogLevel, type LogicalPromotionConf, type TreeShakeConf, type TypeScriptOptions, mkCodegenLogger, prettyReport, registerFromManager, registerFromPackageMetas };