@atomic-ehr/codegen 0.0.4-canary.20251218085438.283b979 → 0.0.4-canary.20251218111944.d18e50d

package/README.md

@@ -84,7 +84,7 @@ yarn add @atomic-ehr/codegen
 See the [examples/](examples/) directory for working demonstrations:
 
 - **[typescript-r4/](examples/typescript-r4/)** - FHIR R4 type generation with resource creation demo and profile usage
-- **[typescript-ccda/](examples/typescript-ccda/)** - C-CDA on FHIR type generation  
+- **[typescript-ccda/](examples/typescript-ccda/)** - C-CDA on FHIR type generation
 - **[typescript-sql-on-fhir/](examples/typescript-sql-on-fhir/)** - SQL on FHIR ViewDefinition with tree shaking
 - **[python/](examples/python/)** - Python/Pydantic model generation with configurable field formats
 - **[csharp/](examples/csharp/)** - C# class generation with namespace configuration
@@ -193,6 +193,32 @@ Tree shaking optimizes the generated output by including only the resources you
 
 This feature automatically resolves and includes all dependencies (referenced types, base resources, nested types) while excluding unused resources, significantly reducing the size of generated code and improving compilation times.
 
+##### Field-Level Tree Shaking
+
+Beyond resource-level filtering, tree shaking supports fine-grained field selection using `selectFields` (whitelist) or `ignoreFields` (blacklist):
+
+```typescript
+.treeShake({
+  "hl7.fhir.r4.core#4.0.1": {
+    "http://hl7.org/fhir/StructureDefinition/Patient": {
+      selectFields: ["id", "name", "birthDate", "gender"]
+    },
+    "http://hl7.org/fhir/StructureDefinition/Observation": {
+      ignoreFields: ["performer", "note"]
+    }
+  }
+})
+```
+
+**Configuration Rules:**
+- `selectFields`: Only includes the specified fields (whitelist approach)
+- `ignoreFields`: Removes specified fields, keeps everything else (blacklist approach)
+- These options are **mutually exclusive** - you cannot use both in the same rule
+
+**Polymorphic Field Handling:**
+
+FHIR choice types (like `multipleBirth[x]` which can be boolean or integer) are handled intelligently. Selecting/ignoring the base field affects all variants, while targeting specific variants only affects those types.
+
 ### Generation
 
 The generation stage uses a `WriterGenerator` system that transforms Type Schema into target language code. The architecture consists of:

package/dist/cli/index.js

@@ -1,12 +1,12 @@
 #!/usr/bin/env node
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fe(i,e,t){let r=e.join("."),[o,n,s]=t?[{name:"shared",version:"1.0.0"},t,`urn:fhir:binding:${t}`]:[i.package_meta,`${i.name}.${r}_binding`,`${i.url}#${r}_binding`];return {kind:"binding",package:o.name,version:o.version,name:n,url:s}}function me(i,e,t,r){let o={};if(e.derivation==="constraint"){let a=i.resolveFsSpecializations(e.package_meta,e.url).map(l=>Oe(i,l,r)).filter(l=>l!==void 0).flat();for(let l of a.reverse())o[l.identifier.name]=l.identifier.url;}let n=t.join("."),s=o[n]??`${e.url}#${n}`;return {kind:"nested",package:e.package_meta.name,version:e.package_meta.version,name:n,url:s}}function St(i,e,t){let r=[];for(let[o,n]of Object.entries(t)){let s=[...e,o];ee(n)&&r.push([s,n]),n.elements&&r.push(...St(i,s,n.elements));}return r}function cr(i,e,t,r,o){let n={};for(let[s,c]of Object.entries(r)){let a=[...t,s],l=i.resolveElementSnapshot(e,a);ee(l)?n[s]=ye(i,e,a,l,o):n[s]=he(i,e,a,l,o);}return n}function Oe(i,e,t){if(!e.elements)return;let 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o=t.binding.strength,n=t.binding.valueSet;if(!n||!(o==="required"||o==="extensible"&&(t.type==="code"||t.type==="Coding")||o==="preferred"&&(t.type==="code"||t.type==="Coding")))return;let c=Be(i,e.package_meta,n);if(!c||c.length===0)return;let a=c.map(l=>l.code).filter(l=>l&&typeof l=="string"&&l.trim().length>0);if(a.length>kt){r?.dry_warn(`Value set ${n} has ${a.length} which is more than ${kt} codes, which may cause issues with code generation.`);return}return a.length>0?a:void 0}function ur(i,e,t,r,o){if(!r.binding?.valueSet)return;let n=fe(e,t,r.binding.bindingName),s=Le(i,e,t,r,o),c=ge(i,e.package_meta,r.binding.valueSet),a=[];s&&a.push(s),a.push(c);let l=Me(i,e,r,o);return {identifier:n,type:s,valueset:c,strength:r.binding.strength,enum:l,dependencies:a}}function Tt(i,e,t){let r=new Set;if(!e.elements)return [];let o=[];function n(a,l){for(let[p,m]of Object.entries(a)){let y=[...l,p],d=y.join(".");if(!r.has(d)){if(r.add(d),m.binding){let 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i){let r=t.identifier.package;e[r]||(e[r]=[]),e[r].push(t);}for(let[t,r]of Object.entries(e)){let o={};for(let s of r)o[JSON.stringify(s.identifier)]=s;let n=Object.values(o);n.sort((s,c)=>s.identifier.name.localeCompare(c.identifier.name)),e[t]=n;}return e},yr=(i,e,t)=>{if(i=structuredClone(i),ct(i)||pt(i)||lt(i))return i;for(let r of e.ignoreFields??[]){if(i.fields&&!i.fields[r])throw new Error(`Field ${r} not found`);i.fields&&delete i.fields[r];}return i.dependencies=_e(i.identifier,i.base,i.fields,i.nested),i},Ft=(i,e,{resolutionTree:t,logger:r})=>{let o=[];for(let[c,a]of Object.entries(e))for(let[l,p]of Object.entries(a)){let m=i.resolveByUrl(c,l);if(!m)throw new Error(`Schema not found for ${c} ${l}`);let y=yr(m,p);o.push(y);}let n=(c,a)=>{if(c.length===0)return Object.values(a);for(let p of c)a[JSON.stringify(p.identifier)]=p;let l=[];for(let p of c)if(A(p)){if(!p.dependencies)continue;if(p.dependencies.forEach(m=>{let y=i.resolve(m);if(!y)throw new Error(`Schema not found for 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o=this.pyFhirPackageByName(e);this.generateResourcePackageInit(o,t,r),this.generateResourceFamilies(t);for(let n of t)this.generateResourceModule(n);}generateRootInitFile(e){this.cd("/",()=>{this.cat("__init__.py",()=>{this.generateDisclaimer();let t=this.collectAndImportAllModels(e);this.generateModelRebuilds(t);});});}collectAndImportAllModels(e){let t=[];for(let r of Object.keys(e.groupedResources)){let o=this.pyFhirPackageByName(r);t.push(...this.importComplexTypes(o,e.groupedComplexTypes[r])),t.push(...this.importResources(o,false,e.groupedResources[r]));}return this.line(),t}generateModelRebuilds(e){for(let t of e.sort())this.line(`${t}.model_rebuild()`);}generateBasePy(e){this.cat("base.py",()=>{this.generateDisclaimer(),this.generateDefaultImports(),this.line(),this.generateComplexTypes(e),this.line();});}generateComplexTypes(e){for(let t of It(e))this.generateNestedTypes(t),this.line(),this.generateType(t);}generateResourcePackageInit(e,t,r){this.cat("__init__.py",()=>{this.generateDisclaimer(),this.importComplexTypes(e,r);let o=this.importResources(e,true,t);this.line(),this.generateExportsDeclaration(r,o);});}importComplexTypes(e,t){if(!t||t.length===0)return [];let r=t.map(o=>o.identifier.name).sort();return this.pyImportFrom(`${e}.base`,...r),this.line(),r}buildImportLine(e,t){let r="";for(;e.length>0&&r.length<t;){let o=e.shift();if(!o)throw new Error("Unexpected empty entity");r.length>0&&(r+=", "),r+=o;}return e.length>0&&(r+=", \\"),r}importResources(e,t,r){if(!r||r.length===0)return [];let o=[];for(let n of r){let s=this.importOneResource(n,e);!t&&!n.fields||o.push(...s);}return o}importOneResource(e,t){let r=`${t}.${$(e.identifier.name)}`,o=this.collectResourceImportNames(e);this.pyImportFrom(r,...o);let n=[...o];if(this.shouldImportResourceFamily(e)){let s=`${e.identifier.name}Family`;this.pyImportFrom(`${t}.resource_families`,s);}return n}collectResourceImportNames(e){let t=[Ce(e.identifier)];for(let r of e.nested??[]){let o=Ce(r.identifier);t.push(o);}return t}shouldImportResourceFamily(e){return Pt(this.tsIndex!==void 0),e.identifier.kind==="resource"&&this.tsIndex.resourceChildren(e.identifier).length>0}generateExportsDeclaration(e,t){this.squareBlock(["__all__","="],()=>{let r=[...(e||[]).map(o=>o.identifier.name),...t].sort();for(let o of r)this.line(`'${o}',`);});}generateResourceModule(e){this.cat(`${$(e.identifier.name)}.py`,()=>{this.generateDisclaimer(),this.generateDefaultImports(),this.line(),this.generateDependenciesImports(e),this.line(),this.generateNestedTypes(e),this.line(),this.generateType(e);});}generateType(e){let t=Ce(e.identifier),r=this.getSuperClasses(e);this.line(`class ${t}(${r.join(", ")}):`),this.indentBlock(()=>{this.generateClassBody(e);}),this.line();}getSuperClasses(e){return [...e.base?[e.base.name]:[],...xr(e.identifier.name)]}generateClassBody(e){if(this.generateModelConfig(),!e.fields){this.line("pass");return}e.identifier.kind==="resource"&&this.generateResourceTypeField(e),this.generateFields(e),e.identifier.kind==="resource"&&this.generateResourceMethods(e);}generateModelConfig(){let e=this.opts.allowExtraFields?"allow":"forbid";this.line(`model_config = ConfigDict(validate_by_name=True, serialize_by_alias=True, extra="${e}")`);}generateResourceTypeField(e){this.line(`${this.nameFormatFunction("resourceType")}: str = Field(`),this.indentBlock(()=>{this.line(`default='${e.identifier.name}',`),this.line("alias='resourceType',"),this.line("serialization_alias='resourceType',"),this.line("frozen=True,"),this.line(`pattern='${e.identifier.name}'`);}),this.line(")");}generateFields(e){let t=Object.entries(e.fields??[]).sort(([r],[o])=>r.localeCompare(o));for(let[r,o]of t){if("choices"in o&&o.choices)continue;let n=this.buildFieldInfo(r,o);this.line(`${n.name}: ${n.type}${n.defaultValue}`);}}buildFieldInfo(e,t){let r=Rr(this.nameFormatFunction(e)),o=this.determineFieldType(t),n=this.getFieldDefaultValue(t,e);return {name:r,type:o,defaultValue:n}}determineFieldType(e){let t=e?this.getBaseFieldType(e):"";return "enum"in e&&e.enum&&(t=`Literal[${e.enum.map(o=>`"${o}"`).join(", ")}]`),e.array&&(t=`PyList[${t}]`),e.required||(t=`${t} | None`),t}getBaseFieldType(e){return "type"in e&&e.type.kind==="resource"?`${e.type.name}Family`:"type"in e&&e.type.kind==="nested"?Ce(e.type):"type"in e&&e.type.kind==="primitive-type"?kr[e.type.name]??"str":"type"in e?e.type.name:""}getFieldDefaultValue(e,t){let r=`alias="${t}", serialization_alias="${t}"`;return e.required?` = Field(${r})`:` = Field(None, ${r})`}generateResourceMethods(e){let t=e.identifier.name.toString();this.line(),this.line("def to_json(self, indent: int | None = None) -> str:"),this.line("    return self.model_dump_json(exclude_unset=True, exclude_none=True, indent=indent)"),this.line(),this.line("@classmethod"),this.line(`def from_json(cls, json: str) -> ${t}:`),this.line("    return cls.model_validate_json(json)");}generateNestedTypes(e){if(e.nested){this.line();for(let t of e.nested)this.generateType(t);}}generateDefaultImports(){this.pyImportFrom("__future__","annotations"),this.pyImportFrom("pydantic","BaseModel","ConfigDict","Field","PositiveInt"),this.pyImportFrom("typing","List as PyList","Literal");}generateDependenciesImports(e){!e.dependencies||e.dependencies.length===0||(this.importComplexTypeDependencies(e.dependencies),this.importResourceDependencies(e.dependencies));}importComplexTypeDependencies(e){let t=e.filter(o=>o.kind==="complex-type"),r=this.groupDependenciesByPackage(t);for(let[o,n]of Object.entries(r))this.pyImportFrom(o,...n.sort());}importResourceDependencies(e){let t=e.filter(r=>r.kind==="resource");for(let r of t){this.pyImportType(r);let o=`${P(r.name)}Family`,n=`${this.pyFhirPackage(r)}.resource_families`;this.pyImportFrom(n,o);}}groupDependenciesByPackage(e){let t={};for(let r of e){let o=this.pyPackage(r);t[o]||(t[o]=[]),t[o].push(r.name);}return t}pyImportFrom(e,...t){let r=`from ${e} import ${t.join(", ")}`;this.shouldUseSingleLineImport(r,t)?this.line(r):this.writeMultiLineImport(e,t);}shouldUseSingleLineImport(e,t){return e.length<=wt||t.length===1}writeMultiLineImport(e,t){this.line(`from ${e} import (\\`),this.indentBlock(()=>{let r=[...t];for(;r.length>0;){let o=this.buildImportLine(r,wt);this.line(o);}}),this.line(")");}pyImportType(e){this.pyImportFrom(this.pyPackage(e),P(e.name));}generateResourceFamilies(e){Pt(this.tsIndex!==void 0);let t=Object.keys(z(e)).map(n=>`${this.opts.rootPackageName}.${n.replaceAll(".","_")}`),r={};for(let n of this.tsIndex.collectResources()){let s=this.tsIndex.resourceChildren(n.identifier).map(c=>c.name);if(s.length>0){let c=`${n.identifier.name}Family`;r[c]=s;}}let o=Object.keys(r);o.length!==0&&this.buildResourceFamiliesFile(t,r,o);}buildResourceFamiliesFile(e,t,r){this.cat("resource_families.py",()=>{this.generateDisclaimer(),this.includeResourceFamilyValidator(),this.line(),this.generateFamilyDefinitions(e,t),this.generateFamilyExports(r);});}includeResourceFamilyValidator(){let e=R__default.readFileSync(Et("resource_family_validator.py"),"utf-8");this.line(e);}generateFamilyDefinitions(e,t){this.line(`packages = [${e.map(r=>`'${r}'`).join(", ")}]`),this.line();for(let[r,o]of Object.entries(t))this.generateFamilyDefinition(r,o);}generateFamilyDefinition(e,t){let r=`${e}_resources`;this.line(`${r} = [${t.map(o=>`'${o}'`).join(", ")}]`),this.line(),this.line(`def validate_and_downcast_${e}(v: Any) -> Any:`),this.line(`   return validate_and_downcast(v, packages, ${r})`),this.line(),this.line(`type ${e} = Annotated[Any, BeforeValidator(validate_and_downcast_${e})]`),this.line();}generateFamilyExports(e){this.line(`__all__ = [${e.map(t=>`'${t}'`).join(", ")}]`);}buildPyPackageName(e){return (e?[$(e)]:[""]).join(".")}pyFhirPackage(e){return this.pyFhirPackageByName(e.package)}pyFhirPackageByName(e){return [this.opts.rootPackageName,this.buildPyPackageName(e)].join(".")}pyPackage(e){return e.kind==="complex-type"?`${this.pyFhirPackage(e)}.base`:e.kind==="resource"?[this.pyFhirPackage(e),$(e.name)].join("."):this.pyFhirPackage(e)}getFieldFormatFunction(e){return Ve[e]?Ve[e]:(this.logger()?.warn(`Unknown field format '${e}'. Defaulting to SnakeCase.`),this.logger()?.warn(`Supported formats: ${Object.keys(Ve).join(", ")}`),$)}};var Ue=i=>i!==null&&typeof i=="object"&&i.resourceType==="CodeSystem";var Te=i=>i!==null&&typeof i=="object"&&i.resourceType==="ValueSet";var Ir=async(i,e)=>{let r=(await i.packageJson(e.name)).dependencies;return r!==void 0?Object.entries(r).map(([o,n])=>({name:o,version:n})):[]},Ot=i=>({pkg:i,canonicalResolution:{},fhirSchemas:{},valueSets:{}}),Lt=async(i,e,t,r,o)=>{let n=v(e);if(o?.info(`${" ".repeat(t*2)}+ ${n}`),r[n])return r[n];let s=Ot(e);for(let a of await i.search({package:e})){let l=a.url;if(!l||!(isStructureDefinition(a)||Te(a)||Ue(a)))continue;let p=l;s.canonicalResolution[p]&&o?.dry_warn(`Duplicate canonical URL: ${p} at ${n}.`),s.canonicalResolution[p]=[{deep:t,pkg:e,pkgId:n,resource:a}];}let c=await Ir(i,e);for(let a of c){let{canonicalResolution:l}=await Lt(i,a,t+1,r,o);for(let[p,m]of Object.entries(l)){let y=p;s.canonicalResolution[y]=[...s.canonicalResolution[y]||[],...m];}}for(let a of Object.values(s.canonicalResolution))a.sort((l,p)=>l.deep-p.deep);return r[n]=s,s},Nt=(i,e,t)=>{let r=Object.values(i).flatMap(o=>o.canonicalResolution[e]);if(!r)throw new Error(`No canonical resolution found for ${e} in any package`);return r[0]?.resource},te=async(i,{logger:e,fallbackPackageForNameResolution:t,focusedPackages:r})=>{let o=r??await i.packages(),n={};for(let d of o)await Lt(i,d,0,n,e);for(let{pkg:d,canonicalResolution:f}of Object.values(n)){let h=v(d);if(!n[h])throw new Error(`Package ${h} not found`);let u=0;e?.info(`FHIR Schema conversion for '${v(d)}' begins...`);for(let[g,S]of Object.entries(f)){let C=S[0];if(!C)throw new Error("Resource not found");let b=C.resource,x=C.pkg;if(isStructureDefinition(b)){let j=Ne(Dt.translate(b),x);u++,n[h].fhirSchemas[j.url]=j;}if(Te(b)){let j=dt(b,x);n[h].valueSets[j.url]=j;}}e?.info(`FHIR Schema conversion for '${v(d)}' completed: ${u} successful`);}let s=(d,f)=>n[v(d)]?.fhirSchemas[f]||t&&n[v(t)]?.fhirSchemas[f],c=(d,f)=>n[v(d)]?.valueSets[f]||t&&n[v(t)]?.valueSets[f],a=d=>d.match(/^[a-zA-Z0-9]+$/)&&`http://hl7.org/fhir/StructureDefinition/${d}`||d,l=(d,f)=>{let h=s(d,f);if(h===void 0)throw new Error(`Failed to resolve FHIR Schema: '${f}'`);let u=[h];for(;h?.base;){let g=h.package_meta,S=a(h.base);if(h=s(g,S),h===void 0)throw new Error(`Failed to resolve FHIR Schema base for '${f}'. Problem: '${S}' from '${v(g)}'`);u.push(h);}return u};return {...i,testAppendFs(d){let f=Ne(d),h=v(f.package_meta);n[h]||(n[h]=Ot(f.package_meta)),n[h].fhirSchemas[f.url]=f;},resolveFs:s,resolveFsGenealogy:l,resolveFsSpecializations:(d,f)=>l(d,f).filter(h=>h.derivation==="specialization"),ensureSpecializationCanonicalUrl:a,resolveSd:(d,f)=>{let h=Nt(n,f);if(isStructureDefinition(h))return h},allFs:()=>Object.values(n).flatMap(d=>Object.values(d.fhirSchemas)),allVs:()=>Object.values(n).flatMap(d=>Object.values(d.valueSets)),resolveVs:c,resolveAny:d=>Nt(n,d),resolveElementSnapshot:(d,f)=>{let h=l(d.package_meta,d.url),u=Pr(h,f);return $r(u)},getAllElementKeys:d=>{let f=new Set;for(let[h,u]of Object.entries(d)){f.add(h);for(let g of u?.choices||[])d[g]||f.add(g);}return Array.from(f)},resolver:n,resolutionTree:()=>{let d={};for(let[f,h]of Object.entries(n)){let u=h.pkg.name;d[u]={};for(let[g,S]of Object.entries(h.canonicalResolution)){let C=g;d[u][C]=[];for(let b of S)d[u][C].push({deep:b.deep,pkg:b.pkg});}}return d}}};var Pr=(i,e)=>{let[t,...r]=e;return t===void 0?[]:i.map(o=>{if(!o.elements)return;let n=o.elements?.[t];for(let s of r)n=n?.elements?.[s];return n}).filter(o=>o!==void 0)};function $r(i){let e=i.reverse(),t=Object.assign({},...e);return t.elements=void 0,t}var re=class{manager;options;logger;constructor(e){this.options={...e},this.manager=e.manager,this.logger=e.logger||O({prefix:"TypeSchema"});}async registerFromPackageMetas(e){let t=e.map(v);return this.logger?.step(`Loading FHIR packages: ${t.join(", ")}`),await this.manager.init(),te(this.manager,{focusedPackages:e})}generateFhirSchemas(e){this.logger?.progress(`Converting ${e.length} StructureDefinitions to FHIRSchemas`);let t=[],r=0,o=0;for(let n of e)try{let s=Dt.translate(n);t.push(s),r++,this.logger?.debug(`Converted StructureDefinition: ${n.name||n.id} (${n.resourceType})`);}catch(s){o++,this.logger?.warn(`Failed to convert StructureDefinition ${n.name||n.id}: ${s instanceof Error?s.message:String(s)}`);}return this.logger?.success(`FHIR Schema conversion completed: ${r}/${e.length} successful, ${o} failed`),t}async generateValueSetSchemas(e,t){e.length>0&&this.logger?.debug(`${e.length} ValueSets available for enum extraction`);let r=await te(this.manager,{logger:this.logger}),o=[];if(e.length>0){this.logger?.progress(`Converting ${e.length} ValueSets to TypeSchema`);let n=0,s=0;for(let c of e)try{let a=await Se(r,c,t);a&&(o.push(a),n++,this.logger?.debug(`Converted ValueSet: ${c.name||c.id}`));}catch(a){s++,this.logger?.warn(`Failed to convert ValueSet ${c.name||c.id}: ${a instanceof Error?a.message:String(a)}`);}this.logger?.success(`ValueSet conversion completed: ${n}/${e.length} successful, ${s} failed`);}return o}async generateFromPackage(e,t,r){let o={name:e,version:t||"latest"},n=await this.registerFromPackageMetas([o]),s=await this.generateValueSetSchemas(n.allVs(),r);return [...(await Promise.all(n.allFs().map(async l=>await be(n,l,r)))).flat(),...s]}};var ie="Use CodeableReference which is not provided by FHIR R4.",wr="Use Availability which is not provided by FHIR R4.",Bt={"hl7.fhir.uv.extensions.r4#1.0.0":{"http://hl7.org/fhir/StructureDefinition/extended-contact-availability":wr,"http://hl7.org/fhir/StructureDefinition/immunization-procedure":ie,"http://hl7.org/fhir/StructureDefinition/specimen-additive":ie,"http://hl7.org/fhir/StructureDefinition/workflow-barrier":ie,"http://hl7.org/fhir/StructureDefinition/workflow-protectiveFactor":ie,"http://hl7.org/fhir/StructureDefinition/workflow-reason":ie},"hl7.fhir.r5.core#5.0.0":{"http://hl7.org/fhir/StructureDefinition/shareablecodesystem":"FIXME: CodeSystem.concept.concept defined by ElementReference. 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Set(["class","function","return","if","for","while","const","let","var","import","export","interface"]),X=i=>At.has(i)?`"${i}"`:i.includes(" ")||i.includes("-")?`"${i}"`:i,Ge=i=>(At.has(i)&&(i=`${i}_`),i.replace(/[- ]/g,"_")),W=(i,e)=>e.startsWith('"')?`${i}[${e}]`:`${i}.${e}`,Vt=i=>`(${i.map(e=>`"${e}"`).join(" | ")})`,xe=class extends L{tsImportType(e,...t){this.lineSM(`import type { ${t.join(", ")} } from "${e}"`);}generateFhirPackageIndexFile(e){this.cat("index.ts",()=>{let t=e.flatMap(r=>[{identifier:r.identifier,tsPackageName:ze(r.identifier),resourceName:T(r.identifier),nestedTypes:E(r)&&r.nested||B(r)&&r.nested?r.nested.map(o=>T(o.identifier)):[],helpers:E(r)||B(r)?[`is${T(r.identifier)}`]:[]}]).sort((r,o)=>r.resourceName.localeCompare(o.resourceName));t=Array.from(new Map(t.map(r=>[r.resourceName.toLowerCase(),r])).values()).sort((r,o)=>r.resourceName.localeCompare(o.resourceName));for(let r of t)this.debugComment(r.identifier),this.lineSM(`export type { 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${t.identifier.package}.`);this.tsImportType(`../${Re(s.identifier)}`,"Element");}}}generateComplexTypeReexports(e){let t=e.dependencies?.filter(ot).map(r=>({tsPackage:`../${Re(r)}`,name:w(r.name)}));if(t&&t.length>0){for(let r of t)this.lineSM(`export type { ${r.name} } from "${r.tsPackage}"`);this.line();}}addFieldExtension(e){let t=X(`_${e}`);this.lineSM(`${t}?: Element`);}generateType(e,t){let r;t.identifier.name==="Reference"?r="Reference<T extends string = string>":(t.identifier.kind,r=T(t.identifier));let o;if(t.base&&(o=`extends ${He(t.base.url)}`),this.debugComment(t.identifier),!t.fields&&!o&&!E(t)){this.lineSM(`export type ${r} = object`);return}this.curlyBlock(["export","interface",r,o],()=>{if(E(t)||B(t)){let s=[t.identifier];s.push(...e.resourceChildren(t.identifier));let c=this.opts.openResourceTypeSet&&s.length>1?" | string":"";this.lineSM(`resourceType: ${s.sort((a,l)=>a.name.localeCompare(l.name)).map(a=>`"${a.name}"`).join(" | ")}${c}`),this.line();}if(!t.fields)return;let n=Object.entries(t.fields).sort((s,c)=>s[0].localeCompare(c[0]));for(let[s,c]of n){if(H(c))continue;this.debugComment(s,":",c);let a=X(s),l;c.enum?l=Vt(c.enum):t.identifier.name==="Reference"&&a==="reference"?l="`${T}/${string}`":c.reference&&c.reference.length>0?l=`Reference<${c.reference.map(d=>`"${d.name}"`).join(" | ")}>`:Q(c.type)?l=jt(c.type.name):M(c.type)?l=T(c.type):l=c.type.name;let p=c.required?"":"?",m=c.array?"[]":"";this.lineSM(`${a}${p}: ${l}${m}`),this.withPrimitiveTypeExtension(t)&&Q(c.type)&&this.addFieldExtension(s);}});}withPrimitiveTypeExtension(e){if(!this.opts.primitiveTypeExtension||!A(e))return  false;for(let t of Object.values(e.fields??{}))if(!H(t)&&Q(t.type))return  true;return  false}generateResourceTypePredicate(e){if(!E(e)&&!B(e))return;let t=T(e.identifier);this.curlyBlock(["export","const",`is${t}`,"=",`(resource: unknown): resource is ${t}`,"=>"],()=>{this.lineSM(`return resource !== null && typeof resource === "object" && (resource as {resourceType: string}).resourceType === "${e.identifier.name}"`);});}generateNestedTypes(e,t){if(t.nested)for(let r of t.nested)this.generateType(e,r),this.line();}generateProfileType(e,t){this.debugComment("flatProfile",t);let r=T(t.identifier);this.debugComment("identifier",t.identifier),this.debugComment("base",t.base),this.curlyBlock(["export","interface",r],()=>{this.lineSM(`__profileUrl: "${t.identifier.url}"`),this.line();for(let[o,n]of Object.entries(t.fields??{})){if(H(n))continue;this.debugComment(o,n);let s=X(o),c;if(n.enum)c=Vt(n.enum);else if(n.reference&&n.reference.length>0){let a=e.findLastSpecialization(t);if(!A(a))throw new Error(`Invalid specialization for ${t.identifier}`);let l=a.fields?.[o];if(l===void 0||H(l)||l.reference===void 0)throw new Error(`Invalid field declaration for ${o}`);let p=l.reference.map(y=>y.name),m=n.reference.map(y=>{let d=e.findLastSpecializationByIdentifier(y);return d.name!==y.name?`"${d.name}" /*${y.name}*/`:`'${y.name}'`}).join(" | ");p.length===1&&p[0]==="Resource"&&m!=='"Resource"'?c=`Reference<"Resource" /* ${m} */ >`:c=`Reference<${m}>`;}else if(M(n.type))c=T(n.type);else if(Q(n.type))c=jt(n.type.name);else {if(n.type===void 0)throw new Error(`Undefined type for '${o}' field at ${nt(t)}`);c=n.type.name;}this.lineSM(`${s}${n.required?"":"?"}: ${c}${n.array?"[]":""}`);}}),this.line();}generateAttachProfile(e){let t=T(e.base),r=T(e.identifier),o=Object.entries(e.fields||{}).filter(([n,s])=>s&&Z(s)&&s.type!==void 0).map(([n])=>X(n));this.curlyBlock([`export const attach_${r}_to_${t} =`,`(resource: ${t}, profile: ${r}): ${t}`,"=>"],()=>{this.curlyBlock(["return"],()=>{this.line("...resource,"),this.curlyBlock(["meta:"],()=>{this.line(`profile: ['${e.identifier.url}']`);},[","]),o.forEach(n=>{this.line(`${n}: ${W("profile",n)},`);});});}),this.line();}generateExtractProfile(e,t){let r=T(t.base),o=T(t.identifier),n=Object.entries(t.fields||{}).filter(([a,l])=>Z(l)&&l.type!==void 0).map(([a])=>a),s=e.findLastSpecialization(t);if(!A(s))throw new Error(`Specialization not found for ${t.identifier.url}`);let c={};this.curlyBlock([`export const extract_${o}_from_${r} =`,`(resource: ${r}): ${o}`,"=>"],()=>{n.forEach(a=>{let l=X(a),p=t.fields?.[a],m=s.fields?.[a];if(!Z(p)||!Z(m))return;p.required&&!m.required&&this.curlyBlock([`if (${W("resource",l)} === undefined)`],()=>this.lineSM(`throw new Error("'${l}' is required for ${t.identifier.url}")`));let y=p?.reference?.map(f=>f.name),d=m?.reference?.map(f=>f.name);if(y&&d&&y.length!==d.length){let f=`reference_is_valid_${l}`;this.curlyBlock(["const",f,"=","(ref?: Reference)","=>"],()=>{this.line("return !ref"),this.indentBlock(()=>{d.forEach(u=>{this.line(`|| ref.reference?.startsWith('${u}/')`);}),this.line(";");});});let h=p?.required?"":`!${W("resource",l)} || `;p.array?h+=`${W("resource",l)}.every( (ref) => ${f}(ref) )`:h+=`!${f}(${W("resource",l)})`,this.curlyBlock(["if (",h,")"],()=>{this.lineSM(`throw new Error("'${a}' has different references in profile and specialization")`);}),this.line(),c[a]=true;}}),this.curlyBlock(["return"],()=>{this.line(`__profileUrl: '${t.identifier.url}',`),n.forEach(a=>{let l=X(a);c[a]?this.line(`${l}:`,`${W("resource",l)} as ${o}['${l}'],`):this.line(`${l}:`,`${W("resource",l)},`);});});});}generateResourceModule(e,t){this.cat(`${Nr(t.identifier)}`,()=>{if(this.generateDisclaimer(),["complex-type","resource","logical"].includes(t.identifier.kind))this.generateDependenciesImports(e,t),this.generateComplexTypeReexports(t),this.generateNestedTypes(e,t),this.comment("CanonicalURL:",t.identifier.url),this.generateType(e,t),this.generateResourceTypePredicate(t);else if(de(t)){let r=e.flatProfile(t);this.generateDependenciesImports(e,r),this.comment("CanonicalURL:",t.identifier.url),this.generateProfileType(e,r),this.generateAttachProfile(r),this.generateExtractProfile(e,r);}else throw new Error(`Profile generation not implemented for kind: ${t.identifier.kind}`)});}async generate(e){let t=[...e.collectComplexTypes(),...e.collectResources(),...e.collectLogicalModels(),...this.opts.generateProfile?e.collectProfiles().filter(o=>e.isWithMetaField(o)):[]],r=z(t);this.cd("/",()=>{for(let[o,n]of Object.entries(r)){let s=Ut(o);this.cd(s,()=>{for(let c of n)this.generateResourceModule(e,c);this.generateFhirPackageIndexFile(n);});}});}};var Ht=i=>{let e=i.replace(/[^a-zA-Z0-9\-_.@#()]/g,"");return e.length===0?"unknown":e},Or=async(i,e)=>{e.info("Cleaning outputs...");try{e.info(`Clean ${i.outputDir}`),R.rmSync(i.outputDir,{recursive:!0,force:!0}),i.typeSchemaOutputDir&&(e.info(`Clean 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r=pe({name:e,version:t||"latest"});return this.packages.push(r),this}fromPackageRef(e){return this.packages.push(e),this}registry(e){return this.options.registry=e,this}localStructureDefinitions(e){return this.localStructurePackages.push(e),this}localTgzPackage(e){return this.localTgzArchives.push(I.resolve(e)),this}fromSchemas(e){return this.logger.debug(`Adding ${e.length} TypeSchemas to generation`),this.schemas=[...this.schemas,...e],this}typescript(e){let o={...{...{logger:this.logger,outputDir:I.join(this.options.outputDir,"/types"),tabSize:4,withDebugComment:false,commentLinePrefix:"//",generateProfile:true},openResourceTypeSet:false,primitiveTypeExtension:true},...Object.fromEntries(Object.entries(e).filter(([s,c])=>c!==void 0))},n=new xe(o);return this.generators.set("typescript",n),this.logger.debug(`Configured TypeScript generator (${JSON.stringify(o,void 0,2)})`),this}python(e){let o={...{...{logger:this.logger,outputDir:this.options.outputDir,tabSize:4,withDebugComment:false,commentLinePrefix:"#"},rootPackageName:"fhir_types",fieldFormat:"snake_case"},...Object.fromEntries(Object.entries(e).filter(([s,c])=>c!==void 0))},n=new ke(o);return this.generators.set("python",n),this.logger.debug("Configured python generator"),this}csharp(e,t){let r=new ue({outputDir:I.join(this.options.outputDir,"/types"),staticSourceDir:t??void 0,targetNamespace:e,logger:new q({prefix:"C#",timestamp:true,suppressLoggingLevel:[]})});return this.generators.set("C#",r),this.logger.debug("Configured C# generator"),this}onProgress(e){return this.progressCallback=e,this}outputTo(e){this.logger.debug(`Setting output directory: ${e}`),this.options.outputDir=e;for(let t of this.generators.values())t.setOutputDir(e);return this}setLogLevel(e){return this.logger?.setLevel(e),this}throwException(e=true){return this.options.throwException=e,this}cleanOutput(e=true){return this.options.cleanOutput=e,this}writeTypeTree(e){return this.options.exportTypeTree=e,this}treeShake(e){return this.options.treeShake=e,this}writeTypeSchemas(e){return this.options.typeSchemaOutputDir=e,this}async generate(){let e=performance.now(),t={success:false,outputDir:this.options.outputDir,filesGenerated:[],errors:[],warnings:[],duration:0};this.logger.debug(`Starting generation with ${this.generators.size} generators`);try{this.options.cleanOutput&&Or(this.options,this.logger),this.logger.info("Initialize Canonical Manager");let r=this.options.manager||CanonicalManager({packages:this.packages,workingDir:".codegen-cache/canonical-manager-cache",registry:this.options.registry||void 0});if(this.localStructurePackages.length>0)for(let p of this.localStructurePackages)this.logger.info(`Registering local StructureDefinitions for ${p.package.name}@${p.package.version}`),await r.addLocalPackage({name:p.package.name,version:p.package.version,path:p.path,dependencies:p.dependencies?.map(m=>pe(m))});for(let p of this.localTgzArchives)this.logger.info(`Registering local tgz package: ${p}`),await r.addTgzPackage({archivePath:p});let o=await r.init(),n=Object.values(o),s=await te(r,{logger:this.logger,focusedPackages:n}),c=await _t(s,this.logger);await Br(c,this.options,this.logger);let a={resolutionTree:s.resolutionTree(),logger:this.logger},l=je(c,a);this.options.treeShake&&(l=Ft(l,this.options.treeShake,a)),this.options.exportTypeTree&&await l.exportTree(this.options.exportTypeTree),this.logger.debug(`Executing ${this.generators.size} generators`),await this.executeGenerators(t,l),this.logger.info("Generation completed successfully"),t.success=t.errors.length===0,this.logger.debug(`Generation completed: ${t.filesGenerated.length} files`);}catch(r){if(this.logger.error("Code generation failed",r instanceof Error?r:new Error(String(r))),t.errors.push(r instanceof Error?r.message:String(r)),this.options.throwException)throw r}return {...t,success:t.errors.length===0,duration:performance.now()-e}}reset(){return this.schemas=[],this.generators.clear(),this.progressCallback=void 0,this.packages=[],this.localStructurePackages=[],this.localTgzArchives=[],this}getSchemas(){return [...this.schemas]}getGenerators(){return Array.from(this.generators.keys())}async executeGenerators(e,t){for(let[r,o]of this.generators.entries()){this.logger.info(`Generating ${r}...`);try{await o.generate(t);let n=o.writtenFiles();e.filesGenerated.push(...n.map(s=>s.absPath)),this.logger.info(`Generating ${r} finished successfully`);}catch(n){if(e.errors.push(`${r} generator failed: ${n instanceof Error?n.message:String(n)}`),this.options.throwException)throw n}}}};var We={outputDir:"./generated",verbose:false,overwrite:true,validate:true,cache:true,cleanOutput:true,registry:"",typescript:{moduleFormat:"esm",generateIndex:true,includeDocuments:false,namingConvention:"PascalCase",strictMode:true,includeProfiles:true,includeExtensions:false,includeCodeSystems:false,includeOperations:false,generateValueSets:false,valueSetDirectory:"valuesets",valueSetMode:"required-only",valueSetStrengths:["required"],includeValueSetHelpers:false,fhirVersion:"R4",resourceTypes:[],maxDepth:10,profileOptions:{generateKind:"interface",includeConstraints:true,includeDocumentation:true,strictMode:false,subfolder:"profiles"},generateBuilders:false,builderOptions:{includeValidation:true,includeFactoryMethods:true,includeInterfaces:true,generateNestedBuilders:true,includeHelperMethods:true,supportPartialBuild:true,includeJSDoc:true,generateFactories:true,includeTypeGuards:true,handleChoiceTypes:true,generateArrayHelpers:true},validatorOptions:{includeCardinality:true,includeTypes:true,includeConstraints:true,includeInvariants:false,validateRequired:true,allowAdditional:false,strictValidation:false,collectMetrics:false,generateAssertions:true,generatePartialValidators:true,optimizePerformance:true,includeJSDoc:true,generateCompositeValidators:true},guardOptions:{includeRuntimeValidation:true,includeErrorMessages:true,treeShakeable:true,targetTSVersion:"5.0",strictGuards:false,includeNullChecks:true,verbose:false}},typeSchema:{enablePersistence:true,cacheDir:".typeschema-cache",maxAge:1440*60*1e3,validateCached:true,forceRegenerate:false,shareCache:true,cacheKeyPrefix:"",treeshake:[],singleFile:false,profiles:{autoDetect:true}},packages:[],files:[],$schema:""},Ie=["atomic-codegen.config.ts","atomic-codegen.config","atomic-codegen.config.json",".atomic-codegenrc","atomic-codegen.json",".atomic-codegen.json","codegen.config.json","codegen.json"],qe=class{validate(e){let t={valid:true,errors:[],warnings:[]};if(!e||typeof e!="object")return t.valid=false,t.errors.push({path:"root",message:"Configuration must be an object",value:e}),t;let r=e;r.outputDir!==void 0&&typeof r.outputDir!="string"&&t.errors.push({path:"outputDir",message:"outputDir must be a string",value:r.outputDir});let o=["verbose","overwrite","validate","cache"];for(let n of o)r[n]!==void 0&&typeof r[n]!="boolean"&&t.errors.push({path:n,message:`${n} must be a boolean`,value:r[n]});if(r.typescript!==void 0){let n=this.validateTypeScriptConfig(r.typescript);t.errors.push(...n);}if(r.typeSchema!==void 0){let n=this.validateTypeSchemaConfig(r.typeSchema);t.errors.push(...n);}return r.packages!==void 0&&(Array.isArray(r.packages)?r.packages.forEach((n,s)=>{typeof n!="string"&&t.errors.push({path:`packages[${s}]`,message:"package name must be a string",value:n});}):t.errors.push({path:"packages",message:"packages must be an array",value:r.packages})),r.files!==void 0&&(Array.isArray(r.files)?r.files.forEach((n,s)=>{typeof n!="string"&&t.errors.push({path:`files[${s}]`,message:"file path must be a string",value:n});}):t.errors.push({path:"files",message:"files must be an array",value:r.files})),t.valid=t.errors.length===0,t.valid&&(t.config=r),t}validateTypeScriptConfig(e){let t=[];if(typeof e!="object"||e===null)return t.push({path:"typescript",message:"typescript config must be an object",value:e}),t;let r=e;r.moduleFormat!==void 0&&(["esm","cjs"].includes(r.moduleFormat)||t.push({path:"typescript.moduleFormat",message:'moduleFormat must be "esm" or "cjs"',value:r.moduleFormat})),r.namingConvention!==void 0&&(["PascalCase","camelCase"].includes(r.namingConvention)||t.push({path:"typescript.namingConvention",message:'namingConvention must be "PascalCase" or "camelCase"',value:r.namingConvention}));let o=["generateIndex","includeDocuments","strictMode","includeProfiles","includeExtensions","includeCodeSystems","includeOperations","generateValueSets","includeValueSetHelpers"];for(let n of o)r[n]!==void 0&&typeof r[n]!="boolean"&&t.push({path:`typescript.${n}`,message:`${n} must be a boolean`,value:r[n]});if(r.validatorOptions!==void 0){let n=this.validateValidatorOptions(r.validatorOptions);t.push(...n);}if(r.guardOptions!==void 0){let n=this.validateGuardOptions(r.guardOptions);t.push(...n);}if(r.profileOptions!==void 0){let n=this.validateProfileOptions(r.profileOptions);t.push(...n);}return t}validateValidatorOptions(e){let t=[];if(typeof e!="object"||e===null)return t.push({path:"typescript.validatorOptions",message:"validatorOptions must be an object",value:e}),t;let 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r[n]!="boolean"&&t.push({path:`typescript.guardOptions.${n}`,message:`${n} must be a boolean`,value:r[n]});return t}validateProfileOptions(e){let t=[];if(typeof e!="object"||e===null)return t.push({path:"typescript.profileOptions",message:"profileOptions must be an object",value:e}),t;let r=e;r.generateKind!==void 0&&(["interface","type","both"].includes(r.generateKind)||t.push({path:"typescript.profileOptions.generateKind",message:'generateKind must be "interface", "type", or "both"',value:r.generateKind})),r.subfolder!==void 0&&typeof r.subfolder!="string"&&t.push({path:"typescript.profileOptions.subfolder",message:"subfolder must be a string",value:r.subfolder});let o=["includeConstraints","includeDocumentation","strictMode"];for(let n of o)r[n]!==void 0&&typeof r[n]!="boolean"&&t.push({path:`typescript.profileOptions.${n}`,message:`${n} must be a boolean`,value:r[n]});return t}validateTypeSchemaConfig(e){let t=[];if(typeof e!="object"||e===null)return t.push({path:"typeSchema",message:"typeSchema config must be an object",value:e}),t;let r=e,o=["enablePersistence","validateCached","forceRegenerate","shareCache"];for(let s of o)r[s]!==void 0&&typeof r[s]!="boolean"&&t.push({path:`typeSchema.${s}`,message:`${s} must be a boolean`,value:r[s]});let n=["cacheDir","cacheKeyPrefix"];for(let s of n)r[s]!==void 0&&typeof r[s]!="string"&&t.push({path:`typeSchema.${s}`,message:`${s} must be a string`,value:r[s]});if(r.maxAge!==void 0&&(typeof r.maxAge!="number"||r.maxAge<=0)&&t.push({path:"typeSchema.maxAge",message:"maxAge must be a positive number",value:r.maxAge}),r.profiles!==void 0)if(typeof r.profiles!="object"||r.profiles===null)t.push({path:"typeSchema.profiles",message:"profiles must be an object",value:r.profiles});else {let s=r.profiles;s.autoDetect!==void 0&&typeof s.autoDetect!="boolean"&&t.push({path:"typeSchema.profiles.autoDetect",message:"autoDetect must be a boolean",value:s.autoDetect});}return t}},Ke=class{validator=new qe;async autoload(e=process.cwd()){let t=await this.findConfigFile(e);return t?this.loadFromFile(t):{...We}}async loadFromFile(e){try{let t;if(e.endsWith(".ts")||e.endsWith("")){let n=await import(resolve(e));t=n.default||n;}else {let o=await readFile(e,"utf-8");t=JSON.parse(o);}let r=this.validator.validate(t);if(!r.valid){let o=r.errors.map(n=>`${n.path}: ${n.message}`).join(`
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v=i=>`${i.name}#${i.version}`,de=i=>`${i.name}@${i.version}`;var Oe=(i,e)=>(e||(e={name:"undefined",version:"undefined"}),{...i,package_meta:i.package_meta||e,name:i.name,url:i.url,base:i.base}),Z=i=>i?.kind==="primitive-type",N=i=>i?.kind==="nested",at=i=>i?.kind==="complex-type",ct=i=>i?.kind==="profile";var _=i=>i?.identifier.kind==="resource"||i?.identifier.kind==="complex-type"||i?.identifier.kind==="logical",lt=i=>i?.identifier.kind==="complex-type",D=i=>i?.identifier.kind==="resource",pt=i=>i?.identifier.kind==="primitive-type",j=i=>i?.identifier.kind==="logical",ue=i=>i?.identifier.kind==="profile";function dt(i){return i?.identifier.kind==="binding"}function ut(i){return i?.identifier.kind==="value-set"}var G=i=>i?i.choices===void 0:false,I=i=>i?i.choices!==void 0:false,Le=i=>i?i.choiceOf!==void 0:false,gt=(i,e)=>{if(!i.url)throw new Error("ValueSet must have a URL");if(!i.name)throw new Error("ValueSet must have a name");return {...i,package_meta:i.package_meta||e,name:i.name,url:i.url}};var ft={"!":"Not","<=":"LessOrEqual",">=":"GreaterOrEqual","<":"Less",">":"Greater","=":"Equal","-":"Dash","+":"Plus","*":"Asterisk","/":"Slash","%":"Percent","&":"And","|":"Or","^":"Xor","~":"Tilde","?":"Question",".":"Dot"};function Xt(i){return i.split("-").map(e=>E(e)).join("-")}function Qt(i){let e=i;for(let t in ft)e=e.replaceAll(t,ft[t]??"");return e}function Zt(i){let e=Number(i[0]);return Number.isInteger(e)&&!Number.isNaN(e)?`_${i}`:i}function mt(i){let e=Xt(i);return e=Zt(e),e=Qt(e),e=E(e),e}function O(i){return E(le(i.replaceAll(".","-")))}var er={boolean:"bool",instant:"string",time:"string",date:"string",dateTime:"string",decimal:"decimal",integer:"int",unsignedInt:"long",positiveInt:"long",integer64:"long",base64Binary:"string",uri:"string",url:"string",canonical:"string",oid:"string",uuid:"string",string:"string",code:"string",markdown:"string",id:"string",xhtml:"string"},tr=["Reference","Expression"],rr=i=>i.required?["required"]:[],ir=i=>{let e=bt(St(i.identifier));return E(e)},nr=i=>i.base?`: ${i.base.name}`:"",or=(i,e=true)=>{if(!i)return;let t=i.split("/").pop();if(t&&(e&&t.includes("#")&&(t=t.split("#")[0]),!!t))return /^\d/.test(t)&&(t=`number_${t}`),O(t)},St=i=>{if(i.kind==="nested"){let e=i.url,t=or(e,false);if(!t)return "";let[r,o]=t.split("#"),n=Y((o??"").split(".")).join("");return O([r,n].join(""))}return O(i.name)},sr=i=>tr.includes(i),bt=i=>sr(i)?`Resource${i}`:i,ge=class extends B{enums={};constructor(e){super({tabSize:4,withDebugComment:false,commentLinePrefix:"//",...e});}async generate(e){let 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e)this.generatePackageEnums(t);}generatePackageEnums(e){let t=this.enums[e];!t||Object.keys(t).length===0||this.cd(`/${e}`,async()=>{this.cat(`${e}Enums.cs`,()=>{this.generateDisclaimer(),this.generateEnumFileContent(e,t);});});}generateEnumFileContent(e,t){this.lineSM("using","System.ComponentModel"),this.line(),this.lineSM(`namespace ${this.opts.targetNamespace}.${e}`);for(let[r,o]of Object.entries(t))this.generateEnum(r,o);}generateEnum(e,t){this.curlyBlock(["public","enum",e],()=>{for(let r of t)this.line(`[Description("${r}")]`),this.line(`${mt(r)},`);}),this.line();}generateResourceDictionaries(e,t){this.cd("/",async()=>{for(let r of t){let o=e.filter(n=>O(n.identifier.package)===r);if(o.length===0)return;this.cat(`${r}ResourceDictionary.cs`,()=>{this.generateDisclaimer(),this.line(),this.lineSM(`namespace ${this.opts.targetNamespace}`),this.generateResourceDictionaryClass(r,o);});}});}generateResourceDictionaryClass(e,t){this.curlyBlock(["public","static","class","ResourceDictionary"],()=>{this.curlyBlock(["public static readonly Dictionary<Type, string> Map = new()"],()=>{for(let r of t){let o=r.identifier.name;this.line(`{ typeof(${e}.${o}), "${o}" },`);}}),this.lineSM();});}copyStaticFiles(){if(!this.opts.staticSourceDir)return;let e=P__default.resolve(this.opts.staticSourceDir);R__default.cpSync(e,this.opts.outputDir,{recursive:true});}generateHelperFile(){let e="src/api/writer-generator/csharp/Helper.cs",t=P__default.join(this.opts.outputDir,"Helper.cs");R__default.copyFileSync(e,t);}};var z=i=>{let e={};for(let t of i){let r=t.identifier.package;e[r]||(e[r]=[]),e[r].push(t);}for(let[t,r]of Object.entries(e)){let o={};for(let s of r)o[JSON.stringify(s.identifier)]=s;let n=Object.values(o);n.sort((s,c)=>s.identifier.name.localeCompare(c.identifier.name)),e[t]=n;}return e},ar=i=>{let e={};for(let r of i)e[r.identifier.name]=r;let t={};for(let r of i){let o=r.identifier.name,n=r.base?.name;t[o]||(t[o]=[]),n&&e[n]&&t[o].push(n);}return t},cr=i=>{let e=[],t={},r={},o=n=>{if(r[n])throw new Error(`Graph has cycles ${n}`);if(!t[n]){r[n]=true;for(let s of i[n]??[])o(s);r[n]=false,t[n]=true,e.push(n);}};for(let n in i)t[n]||o(n);return e},Tt=i=>{let e=ar(i);return cr(e).map(r=>i.find(o=>o.identifier.name===r)).filter(Boolean)},lr=i=>{let e=i.filter(n=>D(n)||j(n)),t=[];for(let n of e)n.base&&t.push({parent:n.base,child:n.identifier});let r=[...t],o=n=>{let s=t.filter(a=>a.parent.name===n.name).map(a=>a.child),c=[];for(let a of s)c.push(...o(a));return [...s,...c]};for(let n of t){let s=o(n.child);for(let c of s)t.some(a=>a.parent.name===n.parent.name&&a.child.name===c.name)||r.push({parent:n.parent,child:c});}return r},me=(i,{resolutionTree:e,logger:t})=>{let r={},o=u=>{let g=u.identifier.url,S=u.identifier.package;if(r[g]||(r[g]={}),r[g][u.identifier.package]&&S!=="shared"){let C=JSON.stringify(u.identifier,void 0,2),b=JSON.stringify(r[g][S]?.identifier,void 0,2);if(C!==b)throw new Error(`Duplicate schema: ${C} and ${b}`);return}r[g][S]=u;};for(let u of i)o(u);let n=lr(i),s=u=>r[u.url]?.[u.package],c=(u,g)=>{if(e){let S=e[u]?.[g]?.[0];if(S)return r[g]?.[S.pkg.name]}return r[g]?.[u]},a=u=>n.filter(g=>g.parent.name===u.name).map(g=>g.child),l=u=>{let g=[],S=u;for(;S;){g.push(S);let C=S.base;if(C===void 0)break;let b=s(C);if(!b){t?.warn(`Failed to resolve base type: ${g.map(x=>`${x.identifier.url} (${x.identifier.kind})`).join(", ")}`);return}S=b;}return g},p=u=>{let g=l(u);if(g===void 0)throw new Error(`Failed to resolve base type: ${u.identifier.url} (${u.identifier.kind})`);return g},m=u=>{let g=p(u).find(S=>S.identifier.kind!=="profile");if(!g)throw new Error(`No non-constraint schema found in hierarchy for: ${u.identifier.name}`);return g};return {_schemaIndex:r,_relations:n,collectComplexTypes:()=>i.filter(lt),collectResources:()=>i.filter(D),collectLogicalModels:()=>i.filter(j),collectProfiles:()=>i.filter(ue),resolve:s,resolveByUrl:c,resourceChildren:a,tryHierarchy:l,hierarchy:p,findLastSpecialization:m,findLastSpecializationByIdentifier:u=>{let g=s(u);return g?m(g).identifier:u},flatProfile:u=>{let g=p(u),S=g.filter(L=>L.identifier.kind==="profile"),C=g.find(L=>L.identifier.kind!=="profile");if(!C)throw new Error(`No non-constraint schema found in hierarchy for ${u.identifier.name}`);let b={};for(let L of S.slice().reverse()){let se=L;if(se.fields)for(let[ae,Qe]of Object.entries(se.fields))b[ae]?b[ae]={...b[ae],...Qe}:b[ae]={...Qe};}let x={};for(let L of S.flatMap(se=>se.dependencies??[]))x[L.url]=L;let U=Object.values(x);return {...u,base:C.identifier,fields:b,dependencies:U}},isWithMetaField:u=>{let g=l(u);return g?g.filter(_).some(S=>S.fields?.meta!==void 0):false},exportTree:async u=>{let g={};for(let[C,b]of Object.entries(z(i))){g[C]={"primitive-type":{},"complex-type":{},resource:{},"value-set":{},nested:{},binding:{},profile:{},logical:{}};for(let x of b)g[C][x.identifier.kind][x.identifier.url]={};}let S=u.endsWith(".yaml")?Ct.stringify(g):JSON.stringify(g,void 0,2);await V.mkdir(P.dirname(u),{recursive:true}),await V.writeFile(u,S);}}};var dr={boolean:"bool",instant:"str",time:"str",date:"str",dateTime:"str",decimal:"float",integer:"int",unsignedInt:"int",positiveInt:"PositiveInt",integer64:"int",base64Binary:"str",uri:"str",url:"str",canonical:"str",oid:"str",uuid:"str",string:"str",code:"str",markdown:"str",id:"str",xhtml:"str"},Me={snake_case:$,PascalCase:w,camelCase:le},ur=new Set(["False","None","True","and","as","assert","async","await","break","class","continue","def","del","elif","else","except","finally","for","from","global","if","import","in","is","lambda","nonlocal","not","or","pass","raise","return","try","while","with","yield","List"]),xt=100,gr=i=>ur.has(i)?`${i}_`:i,fr=i=>i==="Resource"||i==="Element"?["BaseModel"]:[],mr=(i,e=true)=>{if(!i)return;let t=i.split("/").pop();if(t&&(e&&t.includes("#")&&(t=t.split("#")[0]),!!t))return /^\d/.test(t)&&(t=`number_${t}`),$(t)},he=i=>{if(i.kind==="nested"){let e=i.url,t=mr(e,false);if(!t)return "";let[r,o]=t.split("#"),n=Y((o??"").split(".")).join("");return w([r,n].join(""))}return w(i.name)},Ft=i=>{let e=P.dirname(fileURLToPath(import.meta.url));return __filename.endsWith("dist/index.js")?P.resolve(e,"..","assets","api","writer-generator","python",i):P.resolve(e,"../../..","assets","api","writer-generator","python",i)},ye=class extends B{nameFormatFunction;tsIndex;constructor(e){super(e),this.nameFormatFunction=this.getFieldFormatFunction(e.fieldFormat);}async generate(e){this.tsIndex=e;let t={groupedComplexTypes:z(e.collectComplexTypes()),groupedResources:z(e.collectResources())};this.generateRootPackages(t),this.generateSDKPackages(t);}generateRootPackages(e){this.generateRootInitFile(e),R__default.cpSync(Ft("requirements.txt"),P.resolve(this.opts.outputDir,"requirements.txt"));}generateSDKPackages(e){this.generateComplexTypesPackages(e.groupedComplexTypes),this.generateResourcePackages(e);}generateComplexTypesPackages(e){for(let[t,r]of Object.entries(e))this.cd(`/${$(t)}`,()=>{this.generateBasePy(r);});}generateResourcePackages(e){for(let[t,r]of Object.entries(e.groupedResources))this.cd(`/${$(t)}`,()=>{this.generateResourcePackageContent(t,r,e.groupedComplexTypes[t]||[]);});}generateResourcePackageContent(e,t,r){let o=this.pyFhirPackageByName(e);this.generateResourcePackageInit(o,t,r),this.generateResourceFamilies(t);for(let n of t)this.generateResourceModule(n);}generateRootInitFile(e){this.cd("/",()=>{this.cat("__init__.py",()=>{this.generateDisclaimer();let t=this.collectAndImportAllModels(e);this.generateModelRebuilds(t);});});}collectAndImportAllModels(e){let t=[];for(let r of Object.keys(e.groupedResources)){let o=this.pyFhirPackageByName(r);t.push(...this.importComplexTypes(o,e.groupedComplexTypes[r])),t.push(...this.importResources(o,false,e.groupedResources[r]));}return this.line(),t}generateModelRebuilds(e){for(let t of e.sort())this.line(`${t}.model_rebuild()`);}generateBasePy(e){this.cat("base.py",()=>{this.generateDisclaimer(),this.generateDefaultImports(),this.line(),this.generateComplexTypes(e),this.line();});}generateComplexTypes(e){for(let t of Tt(e))this.generateNestedTypes(t),this.line(),this.generateType(t);}generateResourcePackageInit(e,t,r){this.cat("__init__.py",()=>{this.generateDisclaimer(),this.importComplexTypes(e,r);let o=this.importResources(e,true,t);this.line(),this.generateExportsDeclaration(r,o);});}importComplexTypes(e,t){if(!t||t.length===0)return [];let r=t.map(o=>o.identifier.name).sort();return this.pyImportFrom(`${e}.base`,...r),this.line(),r}buildImportLine(e,t){let r="";for(;e.length>0&&r.length<t;){let o=e.shift();if(!o)throw new Error("Unexpected empty entity");r.length>0&&(r+=", "),r+=o;}return e.length>0&&(r+=", \\"),r}importResources(e,t,r){if(!r||r.length===0)return [];let o=[];for(let n of r){let s=this.importOneResource(n,e);!t&&!n.fields||o.push(...s);}return o}importOneResource(e,t){let r=`${t}.${$(e.identifier.name)}`,o=this.collectResourceImportNames(e);this.pyImportFrom(r,...o);let n=[...o];if(this.shouldImportResourceFamily(e)){let s=`${e.identifier.name}Family`;this.pyImportFrom(`${t}.resource_families`,s);}return n}collectResourceImportNames(e){let t=[he(e.identifier)];for(let r of e.nested??[]){let o=he(r.identifier);t.push(o);}return t}shouldImportResourceFamily(e){return ne(this.tsIndex!==void 0),e.identifier.kind==="resource"&&this.tsIndex.resourceChildren(e.identifier).length>0}generateExportsDeclaration(e,t){this.squareBlock(["__all__","="],()=>{let r=[...(e||[]).map(o=>o.identifier.name),...t].sort();for(let o of r)this.line(`'${o}',`);});}generateResourceModule(e){this.cat(`${$(e.identifier.name)}.py`,()=>{this.generateDisclaimer(),this.generateDefaultImports(),this.line(),this.generateDependenciesImports(e),this.line(),this.generateNestedTypes(e),this.line(),this.generateType(e);});}generateType(e){let t=he(e.identifier),r=this.getSuperClasses(e);this.line(`class ${t}(${r.join(", ")}):`),this.indentBlock(()=>{this.generateClassBody(e);}),this.line();}getSuperClasses(e){return [...e.base?[e.base.name]:[],...fr(e.identifier.name)]}generateClassBody(e){if(this.generateModelConfig(),!e.fields){this.line("pass");return}e.identifier.kind==="resource"&&this.generateResourceTypeField(e),this.generateFields(e),e.identifier.kind==="resource"&&this.generateResourceMethods(e);}generateModelConfig(){let e=this.opts.allowExtraFields?"allow":"forbid";this.line(`model_config = ConfigDict(validate_by_name=True, serialize_by_alias=True, extra="${e}")`);}generateResourceTypeField(e){this.line(`${this.nameFormatFunction("resourceType")}: str = Field(`),this.indentBlock(()=>{this.line(`default='${e.identifier.name}',`),this.line("alias='resourceType',"),this.line("serialization_alias='resourceType',"),this.line("frozen=True,"),this.line(`pattern='${e.identifier.name}'`);}),this.line(")");}generateFields(e){let t=Object.entries(e.fields??[]).sort(([r],[o])=>r.localeCompare(o));for(let[r,o]of t){if("choices"in o&&o.choices)continue;let n=this.buildFieldInfo(r,o);this.line(`${n.name}: ${n.type}${n.defaultValue}`);}}buildFieldInfo(e,t){let r=gr(this.nameFormatFunction(e)),o=this.determineFieldType(t),n=this.getFieldDefaultValue(t,e);return {name:r,type:o,defaultValue:n}}determineFieldType(e){let t=e?this.getBaseFieldType(e):"";return "enum"in e&&e.enum&&(t=`Literal[${e.enum.map(o=>`"${o}"`).join(", ")}]`),e.array&&(t=`PyList[${t}]`),e.required||(t=`${t} | None`),t}getBaseFieldType(e){return "type"in e&&e.type.kind==="resource"?`${e.type.name}Family`:"type"in e&&e.type.kind==="nested"?he(e.type):"type"in e&&e.type.kind==="primitive-type"?dr[e.type.name]??"str":"type"in e?e.type.name:""}getFieldDefaultValue(e,t){let r=`alias="${t}", serialization_alias="${t}"`;return e.required?` = Field(${r})`:` = Field(None, ${r})`}generateResourceMethods(e){let t=e.identifier.name.toString();this.line(),this.line("def to_json(self, indent: int | None = None) -> str:"),this.line("    return self.model_dump_json(exclude_unset=True, exclude_none=True, indent=indent)"),this.line(),this.line("@classmethod"),this.line(`def from_json(cls, json: str) -> ${t}:`),this.line("    return cls.model_validate_json(json)");}generateNestedTypes(e){if(e.nested){this.line();for(let t of e.nested)this.generateType(t);}}generateDefaultImports(){this.pyImportFrom("__future__","annotations"),this.pyImportFrom("pydantic","BaseModel","ConfigDict","Field","PositiveInt"),this.pyImportFrom("typing","List as PyList","Literal");}generateDependenciesImports(e){!e.dependencies||e.dependencies.length===0||(this.importComplexTypeDependencies(e.dependencies),this.importResourceDependencies(e.dependencies));}importComplexTypeDependencies(e){let t=e.filter(o=>o.kind==="complex-type"),r=this.groupDependenciesByPackage(t);for(let[o,n]of Object.entries(r))this.pyImportFrom(o,...n.sort());}importResourceDependencies(e){let t=e.filter(r=>r.kind==="resource");for(let r of t){this.pyImportType(r);let o=`${w(r.name)}Family`,n=`${this.pyFhirPackage(r)}.resource_families`;this.pyImportFrom(n,o);}}groupDependenciesByPackage(e){let t={};for(let r of e){let o=this.pyPackage(r);t[o]||(t[o]=[]),t[o].push(r.name);}return t}pyImportFrom(e,...t){let r=`from ${e} import ${t.join(", ")}`;this.shouldUseSingleLineImport(r,t)?this.line(r):this.writeMultiLineImport(e,t);}shouldUseSingleLineImport(e,t){return e.length<=xt||t.length===1}writeMultiLineImport(e,t){this.line(`from ${e} import (\\`),this.indentBlock(()=>{let r=[...t];for(;r.length>0;){let o=this.buildImportLine(r,xt);this.line(o);}}),this.line(")");}pyImportType(e){this.pyImportFrom(this.pyPackage(e),w(e.name));}generateResourceFamilies(e){ne(this.tsIndex!==void 0);let t=Object.keys(z(e)).map(n=>`${this.opts.rootPackageName}.${n.replaceAll(".","_")}`),r={};for(let n of this.tsIndex.collectResources()){let s=this.tsIndex.resourceChildren(n.identifier).map(c=>c.name);if(s.length>0){let c=`${n.identifier.name}Family`;r[c]=s;}}let o=Object.keys(r);o.length!==0&&this.buildResourceFamiliesFile(t,r,o);}buildResourceFamiliesFile(e,t,r){this.cat("resource_families.py",()=>{this.generateDisclaimer(),this.includeResourceFamilyValidator(),this.line(),this.generateFamilyDefinitions(e,t),this.generateFamilyExports(r);});}includeResourceFamilyValidator(){let e=R__default.readFileSync(Ft("resource_family_validator.py"),"utf-8");this.line(e);}generateFamilyDefinitions(e,t){this.line(`packages = [${e.map(r=>`'${r}'`).join(", ")}]`),this.line();for(let[r,o]of Object.entries(t))this.generateFamilyDefinition(r,o);}generateFamilyDefinition(e,t){let r=`${e}_resources`;this.line(`${r} = [${t.map(o=>`'${o}'`).join(", ")}]`),this.line(),this.line(`def validate_and_downcast_${e}(v: Any) -> Any:`),this.line(`   return validate_and_downcast(v, packages, ${r})`),this.line(),this.line(`type ${e} = Annotated[Any, BeforeValidator(validate_and_downcast_${e})]`),this.line();}generateFamilyExports(e){this.line(`__all__ = [${e.map(t=>`'${t}'`).join(", ")}]`);}buildPyPackageName(e){return (e?[$(e)]:[""]).join(".")}pyFhirPackage(e){return this.pyFhirPackageByName(e.package)}pyFhirPackageByName(e){return [this.opts.rootPackageName,this.buildPyPackageName(e)].join(".")}pyPackage(e){return e.kind==="complex-type"?`${this.pyFhirPackage(e)}.base`:e.kind==="resource"?[this.pyFhirPackage(e),$(e.name)].join("."):this.pyFhirPackage(e)}getFieldFormatFunction(e){return Me[e]?Me[e]:(this.logger()?.warn(`Unknown field format '${e}'. Defaulting to SnakeCase.`),this.logger()?.warn(`Supported formats: ${Object.keys(Me).join(", ")}`),$)}};function Be(i){let e=i.split("|")[0];return e||i}function hr(i){return i.split("|")[1]}function yr(i){return i.derivation==="constraint"?"profile":i.kind==="primitive-type"?"primitive-type":i.kind==="complex-type"?"complex-type":i.kind==="resource"?"resource":i.kind==="logical"?"logical":"resource"}function W(i){return {kind:yr(i),package:i.package_meta.name,version:i.package_meta.version,name:i.name,url:i.url}}var Sr=i=>{let e=i.split("/"),t=e[e.length-1];return t&&t.length>0?t.split(/[-_]/).map(r=>r.charAt(0).toUpperCase()+r.slice(1).toLowerCase()).join(""):i};function Se(i,e,t){let r=Be(t),o=Sr(r),n={package_meta:{name:"missing_valuesets",version:hr(r)||"0.0.0"},id:t},s=i.resolveVs(e,r)||n,c=s?.id&&!/^[a-zA-Z0-9_-]{20,}$/.test(s.id)?s.id:o;return {kind:"value-set",package:s.package_meta.name,version:s.package_meta.version,name:c,url:r}}function be(i,e,t){let r=e.join("."),[o,n,s]=t?[{name:"shared",version:"1.0.0"},t,`urn:fhir:binding:${t}`]:[i.package_meta,`${i.name}.${r}_binding`,`${i.url}#${r}_binding`];return {kind:"binding",package:o.name,version:o.version,name:n,url:s}}function ve(i,e,t,r){let o={};if(e.derivation==="constraint"){let a=i.resolveFsSpecializations(e.package_meta,e.url).map(l=>_e(i,l,r)).filter(l=>l!==void 0).flat();for(let l of a.reverse())o[l.identifier.name]=l.identifier.url;}let n=t.join("."),s=o[n]??`${e.url}#${n}`;return {kind:"nested",package:e.package_meta.name,version:e.package_meta.version,name:n,url:s}}function It(i,e,t){let r=[];for(let[o,n]of Object.entries(t)){let s=[...e,o];ee(n)&&r.push([s,n]),n.elements&&r.push(...It(i,s,n.elements));}return r}function br(i,e,t,r,o){let n={};for(let[s,c]of Object.entries(r)){let a=[...t,s],l=i.resolveElementSnapshot(e,a);ee(l)?n[s]=Te(i,e,a,l,o):n[s]=Ce(i,e,a,l,o);}return n}function _e(i,e,t){if(!e.elements)return;let 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o=t.slice(0,-1),n=i.resolveFsGenealogy(e.package_meta,e.url).flatMap(s=>{if(o.length===0)return s.required||[];if(!s.elements)return [];let c=s;for(let a of o)c=c?.elements?.[a];return c?.required||[]});return new Set(n).has(r)}function $t(i,e,t){let r=t[t.length-1];if(!r)throw new Error(`Internal error: fieldName is missing for path ${t.join("/")}`);let o=t.slice(0,-1),n=i.resolveFsGenealogy(e.package_meta,e.url).flatMap(s=>{if(o.length===0)return s.excluded||[];if(!s.elements)return [];let c=s;for(let a of o)c=c?.elements?.[a];return c?.excluded||[]});return new Set(n).has(r)}var vr=(i,e,t)=>{if(t.refers)return t.refers.map(r=>{let o=i.ensureSpecializationCanonicalUrl(r),n=i.resolveFs(e.package_meta,o);if(!n)throw new Error(`Failed to resolve fs for ${o}`);return W(n)})};function je(i,e,t,r,o){if(r.elementReference){let n=r.elementReference.slice(1).filter((s,c)=>c%2===1);return ve(i,e,n,o)}else if(r.type){let n=i.ensureSpecializationCanonicalUrl(r.type),s=i.resolveFs(e.package_meta,n);if(!s)throw new Error(`Could not resolve field type: '${r.type}' (from '${e.url}' in '${v(e.package_meta)}')`);return W(s)}else {if(r.choices)return;if(e.derivation==="constraint")return;throw o?.error(`Can't recognize element type '${e.url}' (${e.derivation}) at '${t.join(".")}': ${JSON.stringify(r,void 0,2)}`),new Error("Unrecognized element type")}}var Ce=(i,e,t,r,o)=>{let n,s;r.binding&&(n=be(e,t,r.binding.bindingName),r.binding.strength==="required"&&r.type==="code"&&(s=Ve(i,e,r,o)));let c=je(i,e,t,r,o);return c||o?.warn(`Field type not found for '${e.url}#${t.join(".")}' (${e.derivation})`),{type:c,required:wt(i,e,t),excluded:$t(i,e,t),reference:vr(i,e,r),array:r.array||false,min:r.min,max:r.max,choices:r.choices,choiceOf:r.choiceOf,binding:n,enum:s}};function ee(i){let e=i.type==="BackboneElement",t=i.type==="Element"&&i.elements!==void 0&&Object.keys(i.elements).length>0,r=i.type===void 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o=t.binding.strength,n=t.binding.valueSet;if(!n||!(o==="required"||o==="extensible"&&(t.type==="code"||t.type==="Coding")||o==="preferred"&&(t.type==="code"||t.type==="Coding")))return;let c=Ue(i,e.package_meta,n);if(!c||c.length===0)return;let a=c.map(l=>l.code).filter(l=>l&&typeof l=="string"&&l.trim().length>0);if(a.length>Et){r?.dry_warn(`Value set ${n} has ${a.length} which is more than ${Et} codes, which may cause issues with code generation.`);return}return a.length>0?a:void 0}function kr(i,e,t,r,o){if(!r.binding?.valueSet)return;let n=be(e,t,r.binding.bindingName),s=je(i,e,t,r,o),c=Se(i,e.package_meta,r.binding.valueSet),a=[];s&&a.push(s),a.push(c);let l=Ve(i,e,r,o);return {identifier:n,type:s,valueset:c,strength:r.binding.strength,enum:l,dependencies:a}}function Nt(i,e,t){let r=new Set;if(!e.elements)return [];let o=[];function n(a,l){for(let[p,m]of Object.entries(a)){let y=[...l,p],d=y.join(".");if(!r.has(d)){if(r.add(d),m.binding){let 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{identifier:r,description:e.description,concept:o,compose:o?void 0:e.compose}}function Ae(i,e,t,r){let o=[];e&&o.push(e),t&&o.push(...xr(t)),r&&o.push(...Pt(r));let n={};for(let a of o)a.url!==i.url&&(n[a.url]=a);let s=new Set(r?.map(a=>a.identifier.url)),c=Object.values(n).filter(a=>ct(i)||!N(a)?true:!s.has(a.url)).sort((a,l)=>a.url.localeCompare(l.url));return c.length>0?c:void 0}function Ir(i,e,t){let r=W(e),o;if(e.base&&e.type!=="Element"){let p=i.resolveFs(e.package_meta,i.ensureSpecializationCanonicalUrl(e.base));if(!p)throw new Error(`Base resource not found '${e.base}' for <${e.url}> from ${v(e.package_meta)}`);o=W(p);}let n=Rr(i,e,[],e.elements,t),s=_e(i,e,t),c=Ae(r,o,n,s),a={identifier:r,base:o,fields:n,nested:s,description:e.description,dependencies:c},l=Nt(i,e,t);return [a,...l]}async function Re(i,e,t){let r=Ir(i,e,t);if(Fr(e,W(e))){let o=r[0];if(!o)throw new Error("Expected schema to be defined");o.metadata={isExtension:true};}return r}var He=i=>i!==null&&typeof i=="object"&&i.resourceType==="CodeSystem";var xe=i=>i!==null&&typeof i=="object"&&i.resourceType==="ValueSet";var Pr=async(i,e)=>{let r=(await i.packageJson(e.name)).dependencies;return r!==void 0?Object.entries(r).map(([o,n])=>({name:o,version:n})):[]},Lt=i=>({pkg:i,canonicalResolution:{},fhirSchemas:{},valueSets:{}}),Mt=async(i,e,t,r,o)=>{let n=v(e);if(o?.info(`${" ".repeat(t*2)}+ ${n}`),r[n])return r[n];let s=Lt(e);for(let a of await i.search({package:e})){let l=a.url;if(!l||!(isStructureDefinition(a)||xe(a)||He(a)))continue;let p=l;s.canonicalResolution[p]&&o?.dry_warn(`Duplicate canonical URL: ${p} at ${n}.`),s.canonicalResolution[p]=[{deep:t,pkg:e,pkgId:n,resource:a}];}let c=await Pr(i,e);for(let a of c){let{canonicalResolution:l}=await Mt(i,a,t+1,r,o);for(let[p,m]of Object.entries(l)){let y=p;s.canonicalResolution[y]=[...s.canonicalResolution[y]||[],...m];}}for(let a of Object.values(s.canonicalResolution))a.sort((l,p)=>l.deep-p.deep);return r[n]=s,s},Dt=(i,e,t)=>{let r=Object.values(i).flatMap(o=>o.canonicalResolution[e]);if(!r)throw new Error(`No canonical resolution found for ${e} in any package`);return r[0]?.resource},te=async(i,{logger:e,fallbackPackageForNameResolution:t,focusedPackages:r})=>{let o=r??await i.packages(),n={};for(let d of o)await Mt(i,d,0,n,e);for(let{pkg:d,canonicalResolution:f}of Object.values(n)){let h=v(d);if(!n[h])throw new Error(`Package ${h} not found`);let u=0;e?.info(`FHIR Schema conversion for '${v(d)}' begins...`);for(let[g,S]of Object.entries(f)){let C=S[0];if(!C)throw new Error("Resource not found");let b=C.resource,x=C.pkg;if(isStructureDefinition(b)){let U=Oe(Ot.translate(b),x);u++,n[h].fhirSchemas[U.url]=U;}if(xe(b)){let U=gt(b,x);n[h].valueSets[U.url]=U;}}e?.info(`FHIR Schema conversion for '${v(d)}' completed: ${u} successful`);}let s=(d,f)=>n[v(d)]?.fhirSchemas[f]||t&&n[v(t)]?.fhirSchemas[f],c=(d,f)=>n[v(d)]?.valueSets[f]||t&&n[v(t)]?.valueSets[f],a=d=>d.match(/^[a-zA-Z0-9]+$/)&&`http://hl7.org/fhir/StructureDefinition/${d}`||d,l=(d,f)=>{let h=s(d,f);if(h===void 0)throw new Error(`Failed to resolve FHIR Schema: '${f}'`);let u=[h];for(;h?.base;){let g=h.package_meta,S=a(h.base);if(h=s(g,S),h===void 0)throw new Error(`Failed to resolve FHIR Schema base for '${f}'. Problem: '${S}' from '${v(g)}'`);u.push(h);}return u};return {...i,testAppendFs(d){let f=Oe(d),h=v(f.package_meta);n[h]||(n[h]=Lt(f.package_meta)),n[h].fhirSchemas[f.url]=f;},resolveFs:s,resolveFsGenealogy:l,resolveFsSpecializations:(d,f)=>l(d,f).filter(h=>h.derivation==="specialization"),ensureSpecializationCanonicalUrl:a,resolveSd:(d,f)=>{let h=Dt(n,f);if(isStructureDefinition(h))return h},allFs:()=>Object.values(n).flatMap(d=>Object.values(d.fhirSchemas)),allVs:()=>Object.values(n).flatMap(d=>Object.values(d.valueSets)),resolveVs:c,resolveAny:d=>Dt(n,d),resolveElementSnapshot:(d,f)=>{let h=l(d.package_meta,d.url),u=wr(h,f);return $r(u)},getAllElementKeys:d=>{let f=new Set;for(let[h,u]of Object.entries(d)){f.add(h);for(let g of u?.choices||[])d[g]||f.add(g);}return Array.from(f)},resolver:n,resolutionTree:()=>{let d={};for(let[f,h]of Object.entries(n)){let u=h.pkg.name;d[u]={};for(let[g,S]of Object.entries(h.canonicalResolution)){let C=g;d[u][C]=[];for(let b of S)d[u][C].push({deep:b.deep,pkg:b.pkg});}}return d}}};var wr=(i,e)=>{let[t,...r]=e;return t===void 0?[]:i.map(o=>{if(!o.elements)return;let n=o.elements?.[t];for(let s of r)n=n?.elements?.[s];return n}).filter(o=>o!==void 0)};function $r(i){let e=i.reverse(),t=Object.assign({},...e);return t.elements=void 0,t}var re=class{manager;options;logger;constructor(e){this.options={...e},this.manager=e.manager,this.logger=e.logger||M({prefix:"TypeSchema"});}async registerFromPackageMetas(e){let t=e.map(v);return this.logger?.step(`Loading FHIR packages: ${t.join(", ")}`),await this.manager.init(),te(this.manager,{focusedPackages:e})}generateFhirSchemas(e){this.logger?.progress(`Converting ${e.length} StructureDefinitions to FHIRSchemas`);let t=[],r=0,o=0;for(let n of e)try{let s=Ot.translate(n);t.push(s),r++,this.logger?.debug(`Converted StructureDefinition: ${n.name||n.id} (${n.resourceType})`);}catch(s){o++,this.logger?.warn(`Failed to convert StructureDefinition ${n.name||n.id}: ${s instanceof Error?s.message:String(s)}`);}return this.logger?.success(`FHIR Schema conversion completed: ${r}/${e.length} successful, ${o} failed`),t}async generateValueSetSchemas(e,t){e.length>0&&this.logger?.debug(`${e.length} ValueSets available for enum extraction`);let r=await te(this.manager,{logger:this.logger}),o=[];if(e.length>0){this.logger?.progress(`Converting ${e.length} ValueSets to TypeSchema`);let n=0,s=0;for(let c of e)try{let a=await ke(r,c,t);a&&(o.push(a),n++,this.logger?.debug(`Converted ValueSet: ${c.name||c.id}`));}catch(a){s++,this.logger?.warn(`Failed to convert ValueSet ${c.name||c.id}: ${a instanceof Error?a.message:String(a)}`);}this.logger?.success(`ValueSet conversion completed: ${n}/${e.length} successful, ${s} failed`);}return o}async generateFromPackage(e,t,r){let o={name:e,version:t||"latest"},n=await this.registerFromPackageMetas([o]),s=await this.generateValueSetSchemas(n.allVs(),r);return [...(await Promise.all(n.allFs().map(async l=>await Re(n,l,r)))).flat(),...s]}};var ie="Use CodeableReference which is not provided by FHIR R4.",Er="Use Availability which is not provided by FHIR R4.",_t={"hl7.fhir.uv.extensions.r4#1.0.0":{"http://hl7.org/fhir/StructureDefinition/extended-contact-availability":Er,"http://hl7.org/fhir/StructureDefinition/immunization-procedure":ie,"http://hl7.org/fhir/StructureDefinition/specimen-additive":ie,"http://hl7.org/fhir/StructureDefinition/workflow-barrier":ie,"http://hl7.org/fhir/StructureDefinition/workflow-protectiveFactor":ie,"http://hl7.org/fhir/StructureDefinition/workflow-reason":ie},"hl7.fhir.r5.core#5.0.0":{"http://hl7.org/fhir/StructureDefinition/shareablecodesystem":"FIXME: CodeSystem.concept.concept defined by ElementReference. FHIR Schema generator output broken value in it, so we just skip it for now."}},jt=async(i,e)=>{let t=[];for(let r of i.allFs()){let o=v(r.package_meta);if(_t[o]?.[r.url]){e?.dry_warn(`Skip ${r.url} from ${o}. 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i;if(e.selectFields){if(e.ignoreFields)throw new Error("Cannot use both ignoreFields and selectFields in the same rule");Nr(i,e.selectFields);}if(e.ignoreFields){if(e.selectFields)throw new Error("Cannot use both ignoreFields and selectFields in the same rule");Dr(i,e.ignoreFields);}if(i.nested){let r=new Set,o=n=>{Object.values(n.fields??{}).filter(G).filter(s=>N(s.type)).forEach(s=>{let c=s.type.url;if(!r.has(c)){r.add(c);let a=i.nested?.find(l=>l.identifier.url===c);ne(a),o(a);}});};o(i),i.nested=i.nested.filter(n=>r.has(n.identifier.url));}return i.dependencies=Ae(i.identifier,i.base,i.fields,i.nested),i},Vt=(i,e,{resolutionTree:t,logger:r})=>{let o=[];for(let[c,a]of Object.entries(e))for(let[l,p]of Object.entries(a)){let m=i.resolveByUrl(c,l);if(!m)throw new Error(`Schema not found for ${c} ${l}`);let y=Or(m,p);o.push(y);}let n=(c,a)=>{if(c.length===0)return Object.values(a);for(let p of c)a[JSON.stringify(p.identifier)]=p;let l=[];for(let p of c)if(_(p)){if(!p.dependencies)continue;if(p.dependencies.forEach(m=>{let y=i.resolve(m);if(!y)throw new Error(`Dependent schema ${JSON.stringify(m)} not found for ${JSON.stringify(p.identifier)}`);let d=JSON.stringify(y.identifier);a[d]||l.push(y);}),p.nested)for(let m of p.nested){if(N(m.identifier))continue;let y=JSON.stringify(m.identifier);a[y]||l.push(m);}}return n(l,a)},s=n(o,{});return me(s,{resolutionTree:t,logger:r})};var Lr={boolean:"boolean",instant:"string",time:"string",date:"string",dateTime:"string",decimal:"number",integer:"number",unsignedInt:"number",positiveInt:"number",integer64:"number",base64Binary:"string",uri:"string",url:"string",canonical:"string",oid:"string",uuid:"string",string:"string",code:"string",markdown:"string",id:"string",xhtml:"string"},Ut=i=>{let e=Lr[i];if(e===void 0)throw new Error(`Unknown primitive type ${i}`);return e},Ht=i=>nt(i),qe=i=>i.kind==="profile"?`${k(i)}_profile`:w(i.name),Mr=i=>`${qe(i)}.ts`,Fe=i=>`${Ht(i.package)}/${qe(i)}`,ze=(i,e=true)=>{if(!i)return;let t=pe(i,e);if(t)return We(t)},k=i=>{if(i.kind==="nested"){let e=i.url,t=ze(e,false);if(!t)return "";let[r,o]=t.split("#"),n=Y((o??"").split(".")).join("");return We([r,n].join(""))}return We(i.name)},Gt=new Set(["class","function","return","if","for","while","const","let","var","import","export","interface"]),Q=i=>Gt.has(i)?`"${i}"`:i.includes(" ")||i.includes("-")?`"${i}"`:i,We=i=>(Gt.has(i)&&(i=`${i}_`),i.replace(/[- ]/g,"_")),q=(i,e)=>e.startsWith('"')?`${i}[${e}]`:`${i}.${e}`,At=i=>`(${i.map(e=>`"${e}"`).join(" | ")})`,Ie=class extends B{tsImportType(e,...t){this.lineSM(`import type { ${t.join(", ")} } from "${e}"`);}generateFhirPackageIndexFile(e){this.cat("index.ts",()=>{let t=e.flatMap(r=>[{identifier:r.identifier,tsPackageName:qe(r.identifier),resourceName:k(r.identifier),nestedTypes:D(r)&&r.nested||j(r)&&r.nested?r.nested.map(o=>k(o.identifier)):[],helpers:D(r)||j(r)?[`is${k(r.identifier)}`]:[]}]).sort((r,o)=>r.resourceName.localeCompare(o.resourceName));t=Array.from(new Map(t.map(r=>[r.resourceName.toLowerCase(),r])).values()).sort((r,o)=>r.resourceName.localeCompare(o.resourceName));for(let r of t)this.debugComment(r.identifier),this.lineSM(`export type { ${[r.resourceName,...r.nestedTypes].join(", ")} } from "./${r.tsPackageName}"`),r.helpers.length>0&&this.lineSM(`export { ${r.helpers.join(", ")} } from "./${r.tsPackageName}"`);});}generateDependenciesImports(e,t){if(t.dependencies){let r=[],o=[];for(let n of t.dependencies)if(["complex-type","resource","logical"].includes(n.kind))r.push({tsPackage:`../${Fe(n)}`,name:E(n.name),dep:n});else if(N(n)){let s={...n};s.name=ze(n.url),r.push({tsPackage:`../${Fe(s)}`,name:k(n),dep:n});}else o.push(n);r.sort((n,s)=>n.name.localeCompare(s.name));for(let n of r)this.debugComment(n.dep),this.tsImportType(n.tsPackage,n.name);for(let n of o)this.debugComment("skip:",n);if(this.line(),this.withPrimitiveTypeExtension(t)&&t.identifier.name!=="Element"&&t.dependencies.find(n=>n.name==="Element")===void 0){let n="http://hl7.org/fhir/StructureDefinition/Element",s=e.resolveByUrl(t.identifier.package,n);if(!s)throw new Error(`'${n}' not found for ${t.identifier.package}.`);this.tsImportType(`../${Fe(s.identifier)}`,"Element");}}}generateComplexTypeReexports(e){let t=e.dependencies?.filter(at).map(r=>({tsPackage:`../${Fe(r)}`,name:E(r.name)}));if(t&&t.length>0){for(let r of t)this.lineSM(`export type { ${r.name} } from "${r.tsPackage}"`);this.line();}}addFieldExtension(e){let t=Q(`_${e}`);this.lineSM(`${t}?: Element`);}generateType(e,t){let r;t.identifier.name==="Reference"?r="Reference<T extends string = string>":(t.identifier.kind,r=k(t.identifier));let o;if(t.base&&(o=`extends ${ze(t.base.url)}`),this.debugComment(t.identifier),!t.fields&&!o&&!D(t)){this.lineSM(`export type ${r} = object`);return}this.curlyBlock(["export","interface",r,o],()=>{if(D(t)||j(t)){let s=[t.identifier];s.push(...e.resourceChildren(t.identifier));let c=this.opts.openResourceTypeSet&&s.length>1?" | string":"";this.lineSM(`resourceType: ${s.sort((a,l)=>a.name.localeCompare(l.name)).map(a=>`"${a.name}"`).join(" | ")}${c}`),this.line();}if(!t.fields)return;let n=Object.entries(t.fields).sort((s,c)=>s[0].localeCompare(c[0]));for(let[s,c]of n){if(I(c))continue;this.debugComment(s,":",c);let a=Q(s),l;c.enum?l=At(c.enum):t.identifier.name==="Reference"&&a==="reference"?l="`${T}/${string}`":c.reference&&c.reference.length>0?l=`Reference<${c.reference.map(d=>`"${d.name}"`).join(" | ")}>`:Z(c.type)?l=Ut(c.type.name):N(c.type)?l=k(c.type):l=c.type.name;let p=c.required?"":"?",m=c.array?"[]":"";this.lineSM(`${a}${p}: ${l}${m}`),this.withPrimitiveTypeExtension(t)&&Z(c.type)&&this.addFieldExtension(s);}});}withPrimitiveTypeExtension(e){if(!this.opts.primitiveTypeExtension||!_(e))return  false;for(let t of Object.values(e.fields??{}))if(!I(t)&&Z(t.type))return  true;return  false}generateResourceTypePredicate(e){if(!D(e)&&!j(e))return;let t=k(e.identifier);this.curlyBlock(["export","const",`is${t}`,"=",`(resource: unknown): resource is ${t}`,"=>"],()=>{this.lineSM(`return resource !== null && typeof resource === "object" && (resource as {resourceType: string}).resourceType === "${e.identifier.name}"`);});}generateNestedTypes(e,t){if(t.nested)for(let r of t.nested)this.generateType(e,r),this.line();}generateProfileType(e,t){this.debugComment("flatProfile",t);let r=k(t.identifier);this.debugComment("identifier",t.identifier),this.debugComment("base",t.base),this.curlyBlock(["export","interface",r],()=>{this.lineSM(`__profileUrl: "${t.identifier.url}"`),this.line();for(let[o,n]of Object.entries(t.fields??{})){if(I(n))continue;this.debugComment(o,n);let s=Q(o),c;if(n.enum)c=At(n.enum);else if(n.reference&&n.reference.length>0){let a=e.findLastSpecialization(t);if(!_(a))throw new Error(`Invalid specialization for ${t.identifier}`);let l=a.fields?.[o];if(l===void 0||I(l)||l.reference===void 0)throw new Error(`Invalid field declaration for ${o}`);let p=l.reference.map(y=>y.name),m=n.reference.map(y=>{let d=e.findLastSpecializationByIdentifier(y);return d.name!==y.name?`"${d.name}" /*${y.name}*/`:`'${y.name}'`}).join(" | ");p.length===1&&p[0]==="Resource"&&m!=='"Resource"'?c=`Reference<"Resource" /* ${m} */ >`:c=`Reference<${m}>`;}else if(N(n.type))c=k(n.type);else if(Z(n.type))c=Ut(n.type.name);else {if(n.type===void 0)throw new Error(`Undefined type for '${o}' field at ${st(t)}`);c=n.type.name;}this.lineSM(`${s}${n.required?"":"?"}: ${c}${n.array?"[]":""}`);}}),this.line();}generateAttachProfile(e){let t=k(e.base),r=k(e.identifier),o=Object.entries(e.fields||{}).filter(([n,s])=>s&&G(s)&&s.type!==void 0).map(([n])=>Q(n));this.curlyBlock([`export const attach_${r}_to_${t} =`,`(resource: ${t}, profile: ${r}): ${t}`,"=>"],()=>{this.curlyBlock(["return"],()=>{this.line("...resource,"),this.curlyBlock(["meta:"],()=>{this.line(`profile: ['${e.identifier.url}']`);},[","]),o.forEach(n=>{this.line(`${n}: ${q("profile",n)},`);});});}),this.line();}generateExtractProfile(e,t){let r=k(t.base),o=k(t.identifier),n=Object.entries(t.fields||{}).filter(([a,l])=>G(l)&&l.type!==void 0).map(([a])=>a),s=e.findLastSpecialization(t);if(!_(s))throw new Error(`Specialization not found for ${t.identifier.url}`);let c={};this.curlyBlock([`export const extract_${o}_from_${r} =`,`(resource: ${r}): ${o}`,"=>"],()=>{n.forEach(a=>{let l=Q(a),p=t.fields?.[a],m=s.fields?.[a];if(!G(p)||!G(m))return;p.required&&!m.required&&this.curlyBlock([`if (${q("resource",l)} === undefined)`],()=>this.lineSM(`throw new Error("'${l}' is required for ${t.identifier.url}")`));let y=p?.reference?.map(f=>f.name),d=m?.reference?.map(f=>f.name);if(y&&d&&y.length!==d.length){let f=`reference_is_valid_${l}`;this.curlyBlock(["const",f,"=","(ref?: Reference)","=>"],()=>{this.line("return !ref"),this.indentBlock(()=>{d.forEach(u=>{this.line(`|| ref.reference?.startsWith('${u}/')`);}),this.line(";");});});let h=p?.required?"":`!${q("resource",l)} || `;p.array?h+=`${q("resource",l)}.every( (ref) => ${f}(ref) )`:h+=`!${f}(${q("resource",l)})`,this.curlyBlock(["if (",h,")"],()=>{this.lineSM(`throw new Error("'${a}' has different references in profile and specialization")`);}),this.line(),c[a]=true;}}),this.curlyBlock(["return"],()=>{this.line(`__profileUrl: '${t.identifier.url}',`),n.forEach(a=>{let l=Q(a);c[a]?this.line(`${l}:`,`${q("resource",l)} as ${o}['${l}'],`):this.line(`${l}:`,`${q("resource",l)},`);});});});}generateResourceModule(e,t){this.cat(`${Mr(t.identifier)}`,()=>{if(this.generateDisclaimer(),["complex-type","resource","logical"].includes(t.identifier.kind))this.generateDependenciesImports(e,t),this.generateComplexTypeReexports(t),this.generateNestedTypes(e,t),this.comment("CanonicalURL:",t.identifier.url),this.generateType(e,t),this.generateResourceTypePredicate(t);else if(ue(t)){let r=e.flatProfile(t);this.generateDependenciesImports(e,r),this.comment("CanonicalURL:",t.identifier.url),this.generateProfileType(e,r),this.generateAttachProfile(r),this.generateExtractProfile(e,r);}else throw new Error(`Profile generation not implemented for kind: ${t.identifier.kind}`)});}async generate(e){let t=[...e.collectComplexTypes(),...e.collectResources(),...e.collectLogicalModels(),...this.opts.generateProfile?e.collectProfiles().filter(o=>e.isWithMetaField(o)):[]],r=z(t);this.cd("/",()=>{for(let[o,n]of Object.entries(r)){let s=Ht(o);this.cd(s,()=>{for(let c of n)this.generateResourceModule(e,c);this.generateFhirPackageIndexFile(n);});}});}};var zt=i=>{let e=i.replace(/[^a-zA-Z0-9\-_.@#()]/g,"");return e.length===0?"unknown":e},_r=async(i,e)=>{e.info("Cleaning outputs...");try{e.info(`Clean ${i.outputDir}`),R.rmSync(i.outputDir,{recursive:!0,force:!0}),i.typeSchemaOutputDir&&(e.info(`Clean ${i.typeSchemaOutputDir}`),R.rmSync(i.typeSchemaOutputDir,{recursive:!0,force:!0})),i.exportTypeTree&&(e.info(`Clean ${i.exportTypeTree}`),R.rmSync(i.exportTypeTree,{recursive:!0,force:!0}));}catch(t){e.warn(`Error cleaning output directory: ${t instanceof Error?t.message:String(t)}`);}},jr=async(i,e,t)=>{await V.mkdir(e,{recursive:true}),t.info(`Writing TypeSchema files to ${e}/...`);let r={};for(let o of i){let n={name:o.identifier.package,version:o.identifier.version},s=zt(v(n)),c=zt(`${o.identifier.name}(${pe(o.identifier.url)})`),a=JSON.stringify(o,null,2),l=P.join(e,s,c);r[l]||(r[l]=[]),r[l]?.some(p=>p===a)||r[l].push(a);}for(let[o,n]of Object.entries(r))await Promise.all(n.map(async(s,c)=>{let a;c===0?a=`${o}.typeschema.json`:a=`${o}-${c}.typeschema.json`,await V.mkdir(P.dirname(a),{recursive:true}),await V.writeFile(a,s);}));},Vr=async(i,e,t)=>{t.info(`Writing TypeSchema files to: ${e}`),await V.mkdir(P.dirname(e),{recursive:true}),t.info(`Writing TypeSchemas to one file ${e}...`);for(let r of i){let o=JSON.stringify(r,null,2);await V.appendFile(e,`${o}
+`);}},Ur=async(i,e,t)=>{if(e.typeSchemaOutputDir)try{P.extname(e.typeSchemaOutputDir)===".ndjson"?await Vr(i,e.typeSchemaOutputDir,t):await jr(i,e.typeSchemaOutputDir,t),t.info("Writing TypeSchema - DONE");}catch(r){if(t.error("Failed to write TypeSchema output",r instanceof Error?r:new Error(String(r))),e.throwException)throw r}},oe=class{schemas=[];options;generators=new Map;logger;packages=[];localStructurePackages=[];localTgzArchives=[];progressCallback;typeSchemaConfig;constructor(e={}){this.options={outputDir:e.outputDir||"./generated",overwrite:e.overwrite??true,cache:e.cache??true,cleanOutput:e.cleanOutput??true,typeSchemaConfig:e.typeSchemaConfig,manager:e.manager||null,throwException:e.throwException||false,typeSchemaOutputDir:e.typeSchemaOutputDir,exportTypeTree:e.exportTypeTree,treeShake:e.treeShake,registry:e.registry},this.typeSchemaConfig=e.typeSchemaConfig,this.logger=e.logger||M({prefix:"API",level:e.logLevel});}fromPackage(e,t){let r=de({name:e,version:t||"latest"});return this.packages.push(r),this}fromPackageRef(e){return this.packages.push(e),this}registry(e){return this.options.registry=e,this}localStructureDefinitions(e){return this.localStructurePackages.push(e),this}localTgzPackage(e){return this.localTgzArchives.push(P.resolve(e)),this}fromSchemas(e){return this.logger.debug(`Adding ${e.length} TypeSchemas to generation`),this.schemas=[...this.schemas,...e],this}typescript(e){let o={...{...{logger:this.logger,outputDir:P.join(this.options.outputDir,"/types"),tabSize:4,withDebugComment:false,commentLinePrefix:"//",generateProfile:true},openResourceTypeSet:false,primitiveTypeExtension:true},...Object.fromEntries(Object.entries(e).filter(([s,c])=>c!==void 0))},n=new Ie(o);return this.generators.set("typescript",n),this.logger.debug(`Configured TypeScript generator (${JSON.stringify(o,void 0,2)})`),this}python(e){let o={...{...{logger:this.logger,outputDir:this.options.outputDir,tabSize:4,withDebugComment:false,commentLinePrefix:"#"},rootPackageName:"fhir_types",fieldFormat:"snake_case"},...Object.fromEntries(Object.entries(e).filter(([s,c])=>c!==void 0))},n=new ye(o);return this.generators.set("python",n),this.logger.debug("Configured python generator"),this}csharp(e,t){let r=new ge({outputDir:P.join(this.options.outputDir,"/types"),staticSourceDir:t??void 0,targetNamespace:e,logger:new J({prefix:"C#",timestamp:true,suppressLoggingLevel:[]})});return this.generators.set("C#",r),this.logger.debug("Configured C# generator"),this}onProgress(e){return this.progressCallback=e,this}outputTo(e){this.logger.debug(`Setting output directory: ${e}`),this.options.outputDir=e;for(let t of this.generators.values())t.setOutputDir(e);return this}setLogLevel(e){return this.logger?.setLevel(e),this}throwException(e=true){return this.options.throwException=e,this}cleanOutput(e=true){return this.options.cleanOutput=e,this}writeTypeTree(e){return this.options.exportTypeTree=e,this}treeShake(e){return this.options.treeShake=e,this}writeTypeSchemas(e){return this.options.typeSchemaOutputDir=e,this}async generate(){let e=performance.now(),t={success:false,outputDir:this.options.outputDir,filesGenerated:[],errors:[],warnings:[],duration:0};this.logger.debug(`Starting generation with ${this.generators.size} generators`);try{this.options.cleanOutput&&_r(this.options,this.logger),this.logger.info("Initialize Canonical Manager");let r=this.options.manager||CanonicalManager({packages:this.packages,workingDir:".codegen-cache/canonical-manager-cache",registry:this.options.registry||void 0});if(this.localStructurePackages.length>0)for(let p of this.localStructurePackages)this.logger.info(`Registering local StructureDefinitions for ${p.package.name}@${p.package.version}`),await r.addLocalPackage({name:p.package.name,version:p.package.version,path:p.path,dependencies:p.dependencies?.map(m=>de(m))});for(let p of this.localTgzArchives)this.logger.info(`Registering local tgz package: ${p}`),await r.addTgzPackage({archivePath:p});let o=await r.init(),n=Object.values(o),s=await te(r,{logger:this.logger,focusedPackages:n}),c=await jt(s,this.logger);await Ur(c,this.options,this.logger);let a={resolutionTree:s.resolutionTree(),logger:this.logger},l=me(c,a);this.options.treeShake&&(l=Vt(l,this.options.treeShake,a)),this.options.exportTypeTree&&await l.exportTree(this.options.exportTypeTree),this.logger.debug(`Executing ${this.generators.size} generators`),await this.executeGenerators(t,l),this.logger.info("Generation completed successfully"),t.success=t.errors.length===0,this.logger.debug(`Generation completed: ${t.filesGenerated.length} files`);}catch(r){if(this.logger.error("Code generation failed",r instanceof Error?r:new Error(String(r))),t.errors.push(r instanceof Error?r.message:String(r)),this.options.throwException)throw r}return {...t,success:t.errors.length===0,duration:performance.now()-e}}reset(){return this.schemas=[],this.generators.clear(),this.progressCallback=void 0,this.packages=[],this.localStructurePackages=[],this.localTgzArchives=[],this}getSchemas(){return [...this.schemas]}getGenerators(){return Array.from(this.generators.keys())}async executeGenerators(e,t){for(let[r,o]of this.generators.entries()){this.logger.info(`Generating ${r}...`);try{await o.generate(t);let n=o.writtenFiles();e.filesGenerated.push(...n.map(s=>s.absPath)),this.logger.info(`Generating ${r} finished successfully`);}catch(n){if(e.errors.push(`${r} generator failed: ${n instanceof Error?n.message:String(n)}`),this.options.throwException)throw n}}}};var Je={outputDir:"./generated",verbose:false,overwrite:true,validate:true,cache:true,cleanOutput:true,registry:"",typescript:{moduleFormat:"esm",generateIndex:true,includeDocuments:false,namingConvention:"PascalCase",strictMode:true,includeProfiles:true,includeExtensions:false,includeCodeSystems:false,includeOperations:false,generateValueSets:false,valueSetDirectory:"valuesets",valueSetMode:"required-only",valueSetStrengths:["required"],includeValueSetHelpers:false,fhirVersion:"R4",resourceTypes:[],maxDepth:10,profileOptions:{generateKind:"interface",includeConstraints:true,includeDocumentation:true,strictMode:false,subfolder:"profiles"},generateBuilders:false,builderOptions:{includeValidation:true,includeFactoryMethods:true,includeInterfaces:true,generateNestedBuilders:true,includeHelperMethods:true,supportPartialBuild:true,includeJSDoc:true,generateFactories:true,includeTypeGuards:true,handleChoiceTypes:true,generateArrayHelpers:true},validatorOptions:{includeCardinality:true,includeTypes:true,includeConstraints:true,includeInvariants:false,validateRequired:true,allowAdditional:false,strictValidation:false,collectMetrics:false,generateAssertions:true,generatePartialValidators:true,optimizePerformance:true,includeJSDoc:true,generateCompositeValidators:true},guardOptions:{includeRuntimeValidation:true,includeErrorMessages:true,treeShakeable:true,targetTSVersion:"5.0",strictGuards:false,includeNullChecks:true,verbose:false}},typeSchema:{enablePersistence:true,cacheDir:".typeschema-cache",maxAge:1440*60*1e3,validateCached:true,forceRegenerate:false,shareCache:true,cacheKeyPrefix:"",treeshake:[],singleFile:false,profiles:{autoDetect:true}},packages:[],files:[],$schema:""},we=["atomic-codegen.config.ts","atomic-codegen.config","atomic-codegen.config.json",".atomic-codegenrc","atomic-codegen.json",".atomic-codegen.json","codegen.config.json","codegen.json"],Ke=class{validate(e){let t={valid:true,errors:[],warnings:[]};if(!e||typeof e!="object")return t.valid=false,t.errors.push({path:"root",message:"Configuration must be an object",value:e}),t;let r=e;r.outputDir!==void 0&&typeof r.outputDir!="string"&&t.errors.push({path:"outputDir",message:"outputDir must be a string",value:r.outputDir});let o=["verbose","overwrite","validate","cache"];for(let n of o)r[n]!==void 0&&typeof r[n]!="boolean"&&t.errors.push({path:n,message:`${n} must be a boolean`,value:r[n]});if(r.typescript!==void 0){let n=this.validateTypeScriptConfig(r.typescript);t.errors.push(...n);}if(r.typeSchema!==void 0){let n=this.validateTypeSchemaConfig(r.typeSchema);t.errors.push(...n);}return r.packages!==void 0&&(Array.isArray(r.packages)?r.packages.forEach((n,s)=>{typeof n!="string"&&t.errors.push({path:`packages[${s}]`,message:"package name must be a string",value:n});}):t.errors.push({path:"packages",message:"packages must be an array",value:r.packages})),r.files!==void 0&&(Array.isArray(r.files)?r.files.forEach((n,s)=>{typeof n!="string"&&t.errors.push({path:`files[${s}]`,message:"file path must be a string",value:n});}):t.errors.push({path:"files",message:"files must be an array",value:r.files})),t.valid=t.errors.length===0,t.valid&&(t.config=r),t}validateTypeScriptConfig(e){let t=[];if(typeof e!="object"||e===null)return t.push({path:"typescript",message:"typescript config must be an object",value:e}),t;let r=e;r.moduleFormat!==void 0&&(["esm","cjs"].includes(r.moduleFormat)||t.push({path:"typescript.moduleFormat",message:'moduleFormat must be "esm" or "cjs"',value:r.moduleFormat})),r.namingConvention!==void 0&&(["PascalCase","camelCase"].includes(r.namingConvention)||t.push({path:"typescript.namingConvention",message:'namingConvention must be "PascalCase" or "camelCase"',value:r.namingConvention}));let o=["generateIndex","includeDocuments","strictMode","includeProfiles","includeExtensions","includeCodeSystems","includeOperations","generateValueSets","includeValueSetHelpers"];for(let n of o)r[n]!==void 0&&typeof r[n]!="boolean"&&t.push({path:`typescript.${n}`,message:`${n} must be a boolean`,value:r[n]});if(r.validatorOptions!==void 0){let n=this.validateValidatorOptions(r.validatorOptions);t.push(...n);}if(r.guardOptions!==void 0){let n=this.validateGuardOptions(r.guardOptions);t.push(...n);}if(r.profileOptions!==void 0){let n=this.validateProfileOptions(r.profileOptions);t.push(...n);}return t}validateValidatorOptions(e){let t=[];if(typeof e!="object"||e===null)return t.push({path:"typescript.validatorOptions",message:"validatorOptions must be an object",value:e}),t;let r=e,o=["includeCardinality","includeTypes","includeConstraints","includeInvariants","validateRequired","allowAdditional","strictValidation","collectMetrics","generateAssertions","generatePartialValidators","optimizePerformance","includeJSDoc","generateCompositeValidators"];for(let n of o)r[n]!==void 0&&typeof r[n]!="boolean"&&t.push({path:`typescript.validatorOptions.${n}`,message:`${n} must be a boolean`,value:r[n]});return t}validateGuardOptions(e){let t=[];if(typeof e!="object"||e===null)return t.push({path:"typescript.guardOptions",message:"guardOptions must be an object",value:e}),t;let r=e;r.targetTSVersion!==void 0&&(["3.8","4.0","4.5","5.0"].includes(r.targetTSVersion)||t.push({path:"typescript.guardOptions.targetTSVersion",message:'targetTSVersion must be one of: "3.8", "4.0", "4.5", "5.0"',value:r.targetTSVersion}));let o=["includeRuntimeValidation","includeErrorMessages","treeShakeable","strictGuards","includeNullChecks","verbose"];for(let n of o)r[n]!==void 0&&typeof r[n]!="boolean"&&t.push({path:`typescript.guardOptions.${n}`,message:`${n} must be a boolean`,value:r[n]});return t}validateProfileOptions(e){let t=[];if(typeof e!="object"||e===null)return t.push({path:"typescript.profileOptions",message:"profileOptions must be an object",value:e}),t;let r=e;r.generateKind!==void 0&&(["interface","type","both"].includes(r.generateKind)||t.push({path:"typescript.profileOptions.generateKind",message:'generateKind must be "interface", "type", or "both"',value:r.generateKind})),r.subfolder!==void 0&&typeof r.subfolder!="string"&&t.push({path:"typescript.profileOptions.subfolder",message:"subfolder must be a string",value:r.subfolder});let o=["includeConstraints","includeDocumentation","strictMode"];for(let n of o)r[n]!==void 0&&typeof r[n]!="boolean"&&t.push({path:`typescript.profileOptions.${n}`,message:`${n} must be a boolean`,value:r[n]});return t}validateTypeSchemaConfig(e){let t=[];if(typeof e!="object"||e===null)return t.push({path:"typeSchema",message:"typeSchema config must be an object",value:e}),t;let r=e,o=["enablePersistence","validateCached","forceRegenerate","shareCache"];for(let s of o)r[s]!==void 0&&typeof r[s]!="boolean"&&t.push({path:`typeSchema.${s}`,message:`${s} must be a boolean`,value:r[s]});let n=["cacheDir","cacheKeyPrefix"];for(let s of n)r[s]!==void 0&&typeof r[s]!="string"&&t.push({path:`typeSchema.${s}`,message:`${s} must be a string`,value:r[s]});if(r.maxAge!==void 0&&(typeof r.maxAge!="number"||r.maxAge<=0)&&t.push({path:"typeSchema.maxAge",message:"maxAge must be a positive number",value:r.maxAge}),r.profiles!==void 0)if(typeof r.profiles!="object"||r.profiles===null)t.push({path:"typeSchema.profiles",message:"profiles must be an object",value:r.profiles});else {let s=r.profiles;s.autoDetect!==void 0&&typeof s.autoDetect!="boolean"&&t.push({path:"typeSchema.profiles.autoDetect",message:"autoDetect must be a boolean",value:s.autoDetect});}return t}},Ye=class{validator=new Ke;async autoload(e=process.cwd()){let t=await this.findConfigFile(e);return t?this.loadFromFile(t):{...Je}}async loadFromFile(e){try{let t;if(e.endsWith(".ts")||e.endsWith("")){let n=await import(resolve(e));t=n.default||n;}else {let o=await readFile(e,"utf-8");t=JSON.parse(o);}let r=this.validator.validate(t);if(!r.valid){let o=r.errors.map(n=>`${n.path}: ${n.message}`).join(`
 `);throw new Error(`Configuration validation failed:
-${o}`)}if(!r.config)throw new Error("Invalid configuration");return this.mergeWithDefaults(r.config)}catch(t){throw t instanceof Error?new Error(`Failed to load config from ${e}: ${t.message}`):t}}async findConfigFile(e){for(let t of Ie){let r=resolve(e,t);if(existsSync(r))return r}return null}mergeWithDefaults(e){return {...We,...e,typescript:{...We.typescript,...e.typescript}}}},Ur=new Ke;async function Pe(i){return Ur.autoload(i)}var zt={command:"generate",describe:"Generate code based on configuration file settings",builder:i=>i.option("verbose",{alias:"v",type:"boolean",default:false,description:"Enable verbose output"}).example("$0 generate","Generate code using settings from config file").example("$0 generate --verbose","Generate with verbose output"),handler:async i=>{if(i._.length>1){let s=i._.slice(1).join(" ");F(`Invalid syntax: 'atomic-codegen generate ${s}'
+${o}`)}if(!r.config)throw new Error("Invalid configuration");return this.mergeWithDefaults(r.config)}catch(t){throw t instanceof Error?new Error(`Failed to load config from ${e}: ${t.message}`):t}}async findConfigFile(e){for(let t of we){let r=resolve(e,t);if(existsSync(r))return r}return null}mergeWithDefaults(e){return {...Je,...e,typescript:{...Je.typescript,...e.typescript}}}},zr=new Ye;async function $e(i){return zr.autoload(i)}var qt={command:"generate",describe:"Generate code based on configuration file settings",builder:i=>i.option("verbose",{alias:"v",type:"boolean",default:false,description:"Enable verbose output"}).example("$0 generate","Generate code using settings from config file").example("$0 generate --verbose","Generate with verbose output"),handler:async i=>{if(i._.length>1){let s=i._.slice(1).join(" ");F(`Invalid syntax: 'atomic-codegen generate ${s}'
 
 The CLI has been simplified and no longer uses subcommands.
 
@@ -14,7 +14,7 @@ The CLI has been simplified and no longer uses subcommands.
 \u274C Old: atomic-codegen generate typescript
 
 All generation settings are now configured in your config file.
-Create an atomic-codegen.config.ts file to get started.`),process.exit(1);}let e=process.cwd(),t=await Gr(e);if(!t){let s=Ie.map(c=>`  - ${c}`).join(`
+Create an atomic-codegen.config.ts file to get started.`),process.exit(1);}let e=process.cwd(),t=await Jr(e);if(!t){let s=we.map(c=>`  - ${c}`).join(`
 `);F(`No configuration file found. Please create one of the following files in your project root:
 ${s}
 
@@ -27,13 +27,13 @@ export default defineConfig({
   typescript: {
     generateIndex: true
   }
-});`),process.exit(1);}let r=await Pe(e),o=i.verbose??r.verbose??false,n=O({prefix:"Generate"});try{Qe("Starting generation from config"),o&&(n.info(`Config file: ${t}`),n.info(`Output directory: ${r.outputDir||"./generated"}`),n.info(`Packages: ${r.packages?.length||0}`),n.info(`Files: ${r.files?.length||0}`),n.info(`TypeScript generation: ${r.typescript?"enabled":"disabled"}`));let s=new ne({outputDir:r.outputDir||"./generated",overwrite:r.overwrite??!0,cache:r.cache??!0,typeSchemaConfig:r.typeSchema,logger:n});if(r.packages&&r.packages.length>0){n.info(`Loading packages from config: ${r.packages.join(", ")}`);for(let a of r.packages){let[l,p]=a.includes("@")?a.split("@"):[a,void 0];s.fromPackage(l,p);}}else throw r.files&&r.files.length>0?(n.info(`Loading files from config: ${r.files.join(", ")}`),new Error("Not Implemented")):new Error("No data source specified in config. Please configure 'packages' or 'files' in your config file.");if(r.typescript)throw new Error("Not Implemented");if(!r.typescript)throw new Error("No generators configured. Please enable 'typescript' in your config file.");o&&s.onProgress((a,l,p,m)=>{let y=Math.round(l/p*100);n.progress(`[${a}] ${y}% - ${m||"Processing..."}`);}),n.step("Executing generation...");let c=await s.generate();if(c.success){if($e(`Generated ${c.filesGenerated.length} files in ${c.duration.toFixed(2)}ms`),n.dim(`Output directory: ${c.outputDir}`),c.warnings.length>0)for(let a of c.warnings)Xe(a);}else {F(`Generation failed with ${c.errors.length} errors`);for(let a of c.errors)n.dim(`  ${a}`);process.exit(1);}}catch(s){F("Generation failed with unexpected error",s instanceof Error?s:new Error(String(s))),process.exit(1);}}};async function Gr(i){for(let e of Ie){let t=resolve(i,e);if(existsSync(t))return t}return null}var Wt={command:"generate <packages..>",describe:"Generate TypeSchema files from FHIR packages",builder:{packages:{type:"string",array:true,demandOption:true,describe:"FHIR packages to process (e.g., hl7.fhir.r4.core@4.0.1)"},output:{alias:"o",type:"string",describe:"Output file or directory",default:"./schemas.ndjson"},format:{alias:"f",type:"string",choices:["ndjson","json"],default:"ndjson",describe:"Output format for TypeSchema files"},treeshake:{alias:"t",type:"string",array:true,describe:"Only generate TypeSchemas for specific ResourceTypes (treeshaking)"},singleFile:{alias:"s",type:"boolean",default:false,describe:"Generate single TypeSchema file instead of multiple files (NDJSON format)"},verbose:{alias:"v",type:"boolean",default:false,describe:"Enable verbose output"},registry:{alias:"r",type:"string",describe:"Custom FHIR package registry URL (default: https://fs.get-ig.org/pkgs/)"}},handler:async i=>{let e=O({prefix:"TypeSchema"});try{let t=await Pe(process.cwd());e.step("Generating TypeSchema from FHIR packages"),e.info(`Packages: ${i.packages.join(", ")}`),e.info(`Output: ${i.output}`);let r=i.singleFile!==void 0?i.singleFile:t.typeSchema?.singleFile??!1,o=r?"ndjson":i.format;e.debug(`Format: ${o}${r&&i.format==="json"?" (forced from json due to singleFile)":""}`);let n=i.treeshake&&i.treeshake.length>0?i.treeshake:t.typeSchema?.treeshake;n&&n.length>0&&e.info(`Treeshaking enabled for ResourceTypes: ${n.join(", ")}`),r&&e.info("Single file output enabled (NDJSON format)");let s=i.registry||t.registry;s&&e.info(`Using custom registry: ${s}`);let c=Date.now(),a=new re({treeshake:n,registry:s,manager:CanonicalManager({packages:[],workingDir:".codegen-cache/canonical-manager-cache",registry:s})}),l=[];for(let d of i.packages){let[f,h]=d.includes("@")?d.split("@"):[d,void 0];e.progress(`Processing package: ${f}${h?`@${h}`:""}`);let u=await a.generateFromPackage(f,h,e);l.push(...u);}if(l.length===0)throw new Error("No schemas were generated from the specified packages");let p=i.output;if(!p)throw new Error("Output format not specified");await mkdir(dirname(p),{recursive:!0});let m;o==="json"?m=JSON.stringify(l,null,2):m=l.map(d=>JSON.stringify(d)).join(`
-`),await writeFile(p,m,"utf-8");let y=Date.now()-c;if(tt(`Generated ${l.length} TypeSchema definitions`,y,{schemas:l.length}),e.dim(`Output: ${p}`),i.verbose){e.debug("Generated schemas:");let d=l.map(f=>`${f.identifier?.name||"Unknown"} (${f.identifier?.kind||"unknown"})`);K(d);}}catch(t){e.error("Failed to generate TypeSchema",t instanceof Error?t:new Error(String(t))),process.exit(1);}}};var qt={command:"typeschema [subcommand]",describe:"TypeSchema operations - generate, validate and merge schemas",builder:i=>i.command(Wt).help().example("$0 typeschema generate hl7.fhir.r4.core@4.0.1","Generate TypeSchema from FHIR R4 core package"),handler:i=>{if(!i.subcommand&&i._.length===1){we("Available typeschema subcommands:"),K(["generate    Generate TypeSchema files from FHIR packages"]),console.log(`
+});`),process.exit(1);}let r=await $e(e),o=i.verbose??r.verbose??false,n=M({prefix:"Generate"});try{et("Starting generation from config"),o&&(n.info(`Config file: ${t}`),n.info(`Output directory: ${r.outputDir||"./generated"}`),n.info(`Packages: ${r.packages?.length||0}`),n.info(`Files: ${r.files?.length||0}`),n.info(`TypeScript generation: ${r.typescript?"enabled":"disabled"}`));let s=new oe({outputDir:r.outputDir||"./generated",overwrite:r.overwrite??!0,cache:r.cache??!0,typeSchemaConfig:r.typeSchema,logger:n});if(r.packages&&r.packages.length>0){n.info(`Loading packages from config: ${r.packages.join(", ")}`);for(let a of r.packages){let[l,p]=a.includes("@")?a.split("@"):[a,void 0];s.fromPackage(l,p);}}else throw r.files&&r.files.length>0?(n.info(`Loading files from config: ${r.files.join(", ")}`),new Error("Not Implemented")):new Error("No data source specified in config. Please configure 'packages' or 'files' in your config file.");if(r.typescript)throw new Error("Not Implemented");if(!r.typescript)throw new Error("No generators configured. Please enable 'typescript' in your config file.");o&&s.onProgress((a,l,p,m)=>{let y=Math.round(l/p*100);n.progress(`[${a}] ${y}% - ${m||"Processing..."}`);}),n.step("Executing generation...");let c=await s.generate();if(c.success){if(Ee(`Generated ${c.filesGenerated.length} files in ${c.duration.toFixed(2)}ms`),n.dim(`Output directory: ${c.outputDir}`),c.warnings.length>0)for(let a of c.warnings)Ze(a);}else {F(`Generation failed with ${c.errors.length} errors`);for(let a of c.errors)n.dim(`  ${a}`);process.exit(1);}}catch(s){F("Generation failed with unexpected error",s instanceof Error?s:new Error(String(s))),process.exit(1);}}};async function Jr(i){for(let e of we){let t=resolve(i,e);if(existsSync(t))return t}return null}var Jt={command:"generate <packages..>",describe:"Generate TypeSchema files from FHIR packages",builder:{packages:{type:"string",array:true,demandOption:true,describe:"FHIR packages to process (e.g., hl7.fhir.r4.core@4.0.1)"},output:{alias:"o",type:"string",describe:"Output file or directory",default:"./schemas.ndjson"},format:{alias:"f",type:"string",choices:["ndjson","json"],default:"ndjson",describe:"Output format for TypeSchema files"},treeshake:{alias:"t",type:"string",array:true,describe:"Only generate TypeSchemas for specific ResourceTypes (treeshaking)"},singleFile:{alias:"s",type:"boolean",default:false,describe:"Generate single TypeSchema file instead of multiple files (NDJSON format)"},verbose:{alias:"v",type:"boolean",default:false,describe:"Enable verbose output"},registry:{alias:"r",type:"string",describe:"Custom FHIR package registry URL (default: https://fs.get-ig.org/pkgs/)"}},handler:async i=>{let e=M({prefix:"TypeSchema"});try{let t=await $e(process.cwd());e.step("Generating TypeSchema from FHIR packages"),e.info(`Packages: ${i.packages.join(", ")}`),e.info(`Output: ${i.output}`);let r=i.singleFile!==void 0?i.singleFile:t.typeSchema?.singleFile??!1,o=r?"ndjson":i.format;e.debug(`Format: ${o}${r&&i.format==="json"?" (forced from json due to singleFile)":""}`);let n=i.treeshake&&i.treeshake.length>0?i.treeshake:t.typeSchema?.treeshake;n&&n.length>0&&e.info(`Treeshaking enabled for ResourceTypes: ${n.join(", ")}`),r&&e.info("Single file output enabled (NDJSON format)");let s=i.registry||t.registry;s&&e.info(`Using custom registry: ${s}`);let c=Date.now(),a=new re({treeshake:n,registry:s,manager:CanonicalManager({packages:[],workingDir:".codegen-cache/canonical-manager-cache",registry:s})}),l=[];for(let d of i.packages){let[f,h]=d.includes("@")?d.split("@"):[d,void 0];e.progress(`Processing package: ${f}${h?`@${h}`:""}`);let u=await a.generateFromPackage(f,h,e);l.push(...u);}if(l.length===0)throw new Error("No schemas were generated from the specified packages");let p=i.output;if(!p)throw new Error("Output format not specified");await mkdir(dirname(p),{recursive:!0});let m;o==="json"?m=JSON.stringify(l,null,2):m=l.map(d=>JSON.stringify(d)).join(`
+`),await writeFile(p,m,"utf-8");let y=Date.now()-c;if(it(`Generated ${l.length} TypeSchema definitions`,y,{schemas:l.length}),e.dim(`Output: ${p}`),i.verbose){e.debug("Generated schemas:");let d=l.map(f=>`${f.identifier?.name||"Unknown"} (${f.identifier?.kind||"unknown"})`);K(d);}}catch(t){e.error("Failed to generate TypeSchema",t instanceof Error?t:new Error(String(t))),process.exit(1);}}};var Kt={command:"typeschema [subcommand]",describe:"TypeSchema operations - generate, validate and merge schemas",builder:i=>i.command(Jt).help().example("$0 typeschema generate hl7.fhir.r4.core@4.0.1","Generate TypeSchema from FHIR R4 core package"),handler:i=>{if(!i.subcommand&&i._.length===1){Ne("Available typeschema subcommands:"),K(["generate    Generate TypeSchema files from FHIR packages"]),console.log(`
 Use 'atomic-codegen typeschema <subcommand> --help' for more information about a subcommand.`),console.log(`
 Examples:`),K(["atomic-codegen typeschema generate hl7.fhir.r4.core@4.0.1 -o schemas.ndjson","atomic-codegen typeschema validate schemas.ndjson","atomic-codegen typeschema merge schema1.ndjson schema2.ndjson -o merged.ndjson"]);return}i.subcommand&&!["generate","validate","merge"].includes(i.subcommand)&&(F(`Unknown typeschema subcommand: ${i.subcommand}
-`),we("Available typeschema subcommands:"),K(["generate    Generate TypeSchema files from FHIR packages","validate    Validate TypeSchema files for correctness and consistency","merge       Merge multiple TypeSchema files into a single file"]),console.log(`
-Use 'atomic-codegen typeschema <subcommand> --help' for more information about a subcommand.`),process.exit(1));}};function Xr(i){return i?{debug:0,info:1,warn:2,error:3,silent:4}[i.toLowerCase()]:void 0}async function Qr(i){let e=Xr(i.logLevel);e===void 0&&(i.debug||i.verbose?e=0:e=1),Ze({timestamp:i.debug,level:e});}function Zr(){return Jr(hideBin(process.argv)).scriptName("atomic-codegen").usage("$0 <command> [options]").middleware(Qr).command(qt).command(zt).option("verbose",{alias:"v",type:"boolean",description:"Enable verbose output",default:false,global:true}).option("debug",{alias:"d",type:"boolean",description:"Enable debug output with detailed logging",default:false,global:true}).option("log-level",{alias:"l",type:"string",choices:["debug","info","warn","error","silent"],description:"Set the log level (default: info)",global:true}).option("config",{alias:"c",type:"string",description:"Path to configuration file (.atomic-codegen.json by default)",global:true}).demandCommand(0).middleware(i=>{i._.length===0&&(et("Welcome to Atomic Codegen!"),console.log("Available commands:"),console.log("  typeschema   Generate, validate and merge TypeSchema files"),console.log("  generate     Generate code based on configuration file"),console.log(`
+`),Ne("Available typeschema subcommands:"),K(["generate    Generate TypeSchema files from FHIR packages","validate    Validate TypeSchema files for correctness and consistency","merge       Merge multiple TypeSchema files into a single file"]),console.log(`
+Use 'atomic-codegen typeschema <subcommand> --help' for more information about a subcommand.`),process.exit(1));}};function ti(i){return i?{debug:0,info:1,warn:2,error:3,silent:4}[i.toLowerCase()]:void 0}async function ri(i){let e=ti(i.logLevel);e===void 0&&(i.debug||i.verbose?e=0:e=1),tt({timestamp:i.debug,level:e});}function ii(){return Zr(hideBin(process.argv)).scriptName("atomic-codegen").usage("$0 <command> [options]").middleware(ri).command(Kt).command(qt).option("verbose",{alias:"v",type:"boolean",description:"Enable verbose output",default:false,global:true}).option("debug",{alias:"d",type:"boolean",description:"Enable debug output with detailed logging",default:false,global:true}).option("log-level",{alias:"l",type:"string",choices:["debug","info","warn","error","silent"],description:"Set the log level (default: info)",global:true}).option("config",{alias:"c",type:"string",description:"Path to configuration file (.atomic-codegen.json by default)",global:true}).demandCommand(0).middleware(i=>{i._.length===0&&(rt("Welcome to Atomic Codegen!"),console.log("Available commands:"),console.log("  typeschema   Generate, validate and merge TypeSchema files"),console.log("  generate     Generate code based on configuration file"),console.log(`
 Use 'atomic-codegen <command> --help' for more information about a command.`),console.log(`
 Quick examples:`),console.log("  atomic-codegen typeschema generate hl7.fhir.r4.core@4.0.1 -o schemas.ndjson"),console.log("  atomic-codegen generate  # Uses atomic-codegen.config.ts"),console.log(`
 Use 'atomic-codegen --help' to see all options.`),process.exit(0));}).help().version("0.1.0").example("$0 generate","Generate code using atomic-codegen.config.ts").example("$0 generate --verbose","Generate with detailed progress output").example("$0 --config custom-config.ts generate","Use custom configuration file").example("$0 typeschema generate hl7.fhir.r4.core@4.0.1 -o schemas.ndjson","Generate TypeSchemas from FHIR package").fail((i,e,t)=>{e?F(e.message,e):F(i),F(`
-Use --help for usage information`),process.exit(1);}).wrap(Math.min(120,process.stdout.columns||80))}async function Je(){await Zr().parseAsync();}import.meta.main&&Je().catch(i=>{i("Unexpected error:",i),process.exit(1);});Je().catch(i=>{console.error("CLI Error:",i instanceof Error?i.message:i),process.exit(1);});
+Use --help for usage information`),process.exit(1);}).wrap(Math.min(120,process.stdout.columns||80))}async function Xe(){await ii().parseAsync();}import.meta.main&&Xe().catch(i=>{i("Unexpected error:",i),process.exit(1);});Xe().catch(i=>{console.error("CLI Error:",i instanceof Error?i.message:i),process.exit(1);});

package/dist/index.d.ts

@@ -300,11 +300,6 @@ interface BindingTypeSchema {
 }
 type Field = RegularField | ChoiceFieldDeclaration | ChoiceFieldInstance;
 
-type TypeSchemaShakeRule = {
-    ignoreFields?: string[];
-};
-type TreeShake = Record<string, Record<string, TypeSchemaShakeRule>>;
-
 type FileSystemWriterOptions = {
     outputDir: string;
     inMemoryOnly?: boolean;
@@ -325,6 +320,12 @@ interface PythonGeneratorOptions extends WriterOptions {
     fieldFormat: StringFormatKey;
 }
 
+type TreeShake = Record<string, Record<string, TreeShakeRule>>;
+type TreeShakeRule = {
+    ignoreFields?: string[];
+    selectFields?: string[];
+};
+
 /**
  * New Config Schema for High-Level API
  *