@atomic-ehr/codegen 0.0.2-canary.20251121141554.c9f1e0b → 0.0.2-canary.20251121164115.c134ba7

package/dist/cli/index.js

@@ -1,12 +1,12 @@
 #!/usr/bin/env node
-import b from'picocolors';import wn from'yargs';import {hideBin}from'yargs/helpers';import*as x from'fs';import x__default,{existsSync}from'fs';import*as F from'path';import F__default,{dirname,resolve}from'path';import*as D from'fs/promises';import {mkdir,writeFile,readFile}from'fs/promises';import {CanonicalManager}from'@atomic-ehr/fhir-canonical-manager';import*as pt from'@atomic-ehr/fhirschema';import {isStructureDefinition}from'@atomic-ehr/fhirschema';import*as vt from'yaml';var B=class n{options;dryWarnSet=new Set;constructor(e={}){this.options={timestamp:false,verbose:false,...e};}static consoleLevelsMap={1:console.log,2:console.warn,3:console.error,0:console.log,4:()=>{}};formatMessage(e,t,r){let o=this.options.timestamp?`${b.gray(new Date().toLocaleTimeString())} `:"",i=this.options.prefix?`${b.cyan(`[${this.options.prefix}]`)} `:"";return `${o}${r(e)} ${i}${t}`}isSuppressed(e){return this.options.suppressLoggingLevel==="all"||this.options.suppressLoggingLevel?.includes(e)||false}tryWriteToConsole(e,t){if(this.isSuppressed(e))return;(n.consoleLevelsMap[e]||console.log)(t);}success(e){this.tryWriteToConsole(1,this.formatMessage("",e,b.green));}error(e,t){this.isSuppressed(3)||(console.error(this.formatMessage("X",e,b.red)),t&&this.options.verbose&&(console.error(b.red(`   ${t.message}`)),t.stack&&console.error(b.gray(t.stack))));}warn(e){this.tryWriteToConsole(2,this.formatMessage("!",e,b.yellow));}dry_warn(e){this.dryWarnSet.has(e)||(this.warn(e),this.dryWarnSet.add(e));}info(e){this.tryWriteToConsole(1,this.formatMessage("i",e,b.blue));}debug(e){this.options.verbose&&this.tryWriteToConsole(0,this.formatMessage("\u{1F41B}",e,b.magenta));}step(e){this.tryWriteToConsole(1,this.formatMessage("\u{1F680}",e,b.cyan));}progress(e){this.tryWriteToConsole(1,this.formatMessage("\u23F3",e,b.blue));}plain(e,t=r=>r){let r=this.options.timestamp?`${b.gray(new Date().toLocaleTimeString())} `:"",o=this.options.prefix?`${b.cyan(`[${this.options.prefix}]`)} `:"";this.tryWriteToConsole(1,`${r}${o}${t(e)}`);}dim(e){this.plain(e,b.gray);}child(e){return new n({...this.options,prefix:this.options.prefix?`${this.options.prefix}:${e}`:e})}configure(e){this.options={...this.options,...e};}},M=new B;function ye(n){M.success(n);}function I(n,e){M.error(n,e);}function Ae(n){M.warn(n);}function Se(n){M.info(n);}function _e(n){M.step(n);}function Mt(n){M.dim(n);}function Ge(n){M.configure(n);}function E(n={}){return new B(n)}function ze(n){console.log(),console.log(b.cyan(b.bold(`\u2501\u2501\u2501 ${n} \u2501\u2501\u2501`)));}function We(n,e,t){let r=n;e&&(r+=` ${b.gray(`(${e}ms)`)}`),ye(r),t&&Object.entries(t).forEach(([o,i])=>{Mt(`  ${o}: ${i}`);});}function U(n,e="\u2022"){n.forEach(t=>{console.log(b.gray(`  ${e} ${t}`));});}var be=n=>n.split(/(?<=[a-z])(?=[A-Z])|[-_.\s]/).filter(Boolean),z=n=>be(n).map(e=>e.toLowerCase()).join("-"),qe=n=>{if(n.length===0)throw new Error("Empty string");return n[0]?.toUpperCase()+n.substring(1).toLowerCase()},Je=n=>{if(n.length===0)throw new Error("Empty string");let[e,...t]=be(n);return [e?.toLowerCase(),...t.map(qe)].join("")},L=n=>be(n).map(qe).join("");var w=n=>!n||n.length===0?n:n.charAt(0).toUpperCase()+n.slice(1),te=n=>n.map(e=>w(e));var Ke=n=>`<${n.identifier.url}> from ${n.identifier.package}#${n.identifier.version}`;var Te=class{opts;currentDir;currentFileDescriptor;writtenFilesSet=new Set;constructor(e){this.opts=e,this.currentDir=e.outputDir;}logger(){return this.opts.logger}cd(e,t){let r=this.currentDir;this.currentDir=e.startsWith("/")?F.join(this.opts.outputDir,e):F.join(this.currentDir,e),x.existsSync(this.currentDir)||x.mkdirSync(this.currentDir,{recursive:true}),this.logger()?.debug(`cd '${this.currentDir}'`),t(),this.currentDir=r;}cat(e,t){if(this.currentFileDescriptor)throw new Error("Can't open file in file");if(e.includes("/"))throw new Error(`Change file path separatly: ${e}`);let r=`${this.currentDir}/${e}`;try{this.currentFileDescriptor=x.openSync(r,"w"),this.writtenFilesSet.add(e),this.logger()?.debug(`cat > '${r}'`),t();}finally{this.currentFileDescriptor&&(x.fsyncSync(this.currentFileDescriptor),x.closeSync(this.currentFileDescriptor)),this.currentFileDescriptor=void 0;}}write(e){if(!this.currentFileDescriptor)throw new Error("No file opened");x.writeSync(this.currentFileDescriptor,e);}async generate(e){throw new Error("Not implemented")}writtenFiles(){return Array.from(this.writtenFilesSet)}},H=class extends Te{currentIndent=0;indent(){this.currentIndent+=this.opts.tabSize;}deindent(){this.currentIndent-=this.opts.tabSize;}writeIndent(){this.write(" ".repeat(this.currentIndent));}line(...e){e.length===0?this.write(`
+import b from'picocolors';import In from'yargs';import {hideBin}from'yargs/helpers';import*as x from'fs';import x__default,{existsSync}from'fs';import*as P from'path';import P__default,{dirname,resolve}from'path';import*as D from'fs/promises';import {mkdir,writeFile,readFile}from'fs/promises';import {CanonicalManager}from'@atomic-ehr/fhir-canonical-manager';import*as pt from'@atomic-ehr/fhirschema';import {isStructureDefinition}from'@atomic-ehr/fhirschema';import*as vt from'yaml';var U=class r{options;dryWarnSet=new Set;constructor(e={}){this.options={timestamp:false,verbose:false,...e};}static consoleLevelsMap={1:console.log,2:console.warn,3:console.error,0:console.log,4:()=>{}};formatMessage(e,t,n){let o=this.options.timestamp?`${b.gray(new Date().toLocaleTimeString())} `:"",i=this.options.prefix?`${b.cyan(`[${this.options.prefix}]`)} `:"";return `${o}${n(e)} ${i}${t}`}isSuppressed(e){return this.options.suppressLoggingLevel==="all"||this.options.suppressLoggingLevel?.includes(e)||false}tryWriteToConsole(e,t){if(this.isSuppressed(e))return;(r.consoleLevelsMap[e]||console.log)(t);}success(e){this.tryWriteToConsole(1,this.formatMessage("",e,b.green));}error(e,t){this.isSuppressed(3)||(console.error(this.formatMessage("X",e,b.red)),t&&this.options.verbose&&(console.error(b.red(`   ${t.message}`)),t.stack&&console.error(b.gray(t.stack))));}warn(e){this.tryWriteToConsole(2,this.formatMessage("!",e,b.yellow));}dry_warn(e){this.dryWarnSet.has(e)||(this.warn(e),this.dryWarnSet.add(e));}info(e){this.tryWriteToConsole(1,this.formatMessage("i",e,b.blue));}debug(e){this.options.verbose&&this.tryWriteToConsole(0,this.formatMessage("\u{1F41B}",e,b.magenta));}step(e){this.tryWriteToConsole(1,this.formatMessage("\u{1F680}",e,b.cyan));}progress(e){this.tryWriteToConsole(1,this.formatMessage("\u23F3",e,b.blue));}plain(e,t=n=>n){let n=this.options.timestamp?`${b.gray(new Date().toLocaleTimeString())} `:"",o=this.options.prefix?`${b.cyan(`[${this.options.prefix}]`)} `:"";this.tryWriteToConsole(1,`${n}${o}${t(e)}`);}dim(e){this.plain(e,b.gray);}child(e){return new r({...this.options,prefix:this.options.prefix?`${this.options.prefix}:${e}`:e})}configure(e){this.options={...this.options,...e};}},M=new U;function Se(r){M.success(r);}function F(r,e){M.error(r,e);}function Ae(r){M.warn(r);}function be(r){M.info(r);}function _e(r){M.step(r);}function Dt(r){M.dim(r);}function Ge(r){M.configure(r);}function E(r={}){return new U(r)}function ze(r){console.log(),console.log(b.cyan(b.bold(`\u2501\u2501\u2501 ${r} \u2501\u2501\u2501`)));}function We(r,e,t){let n=r;e&&(n+=` ${b.gray(`(${e}ms)`)}`),Se(n),t&&Object.entries(t).forEach(([o,i])=>{Dt(`  ${o}: ${i}`);});}function H(r,e="\u2022"){r.forEach(t=>{console.log(b.gray(`  ${e} ${t}`));});}var ve=r=>r.split(/(?<=[a-z])(?=[A-Z])|[-_.\s]/).filter(Boolean),W=r=>ve(r).map(e=>e.toLowerCase()).join("-"),qe=r=>{if(r.length===0)throw new Error("Empty string");return r[0]?.toUpperCase()+r.substring(1).toLowerCase()},Je=r=>{if(r.length===0)throw new Error("Empty string");let[e,...t]=ve(r);return [e?.toLowerCase(),...t.map(qe)].join("")},L=r=>ve(r).map(qe).join("");var I=r=>!r||r.length===0?r:r.charAt(0).toUpperCase()+r.slice(1),ne=r=>r.map(e=>I(e));var Ke=r=>`<${r.identifier.url}> from ${r.identifier.package}#${r.identifier.version}`;var ke=class{opts;currentDir;currentFile;writtenFilesBuffer={};constructor(e){this.opts=e;}setOutputDir(e){if(this.currentDir)throw new Error("Can't change output dir while writing");this.opts.outputDir=e;}logger(){return this.opts.logger}onDiskMkDir(e){this.opts.inMemoryOnly||x.existsSync(e)||x.mkdirSync(e,{recursive:true});}onDiskOpenFile(e){return this.opts.inMemoryOnly?-1:x.openSync(e,"w")}onDiskCloseFile(e){this.opts.inMemoryOnly||(x.fsyncSync(e),x.closeSync(e));}onDiskWrite(e,t){this.opts.inMemoryOnly||x.writeSync(e,t);}cd(e,t){let n=this.currentDir;this.currentDir=e.startsWith("/")?P.join(this.opts.outputDir,e):P.join(this.currentDir??this.opts.outputDir,e),this.onDiskMkDir(this.currentDir),this.logger()?.debug(`cd '${this.currentDir}'`),t(),this.currentDir=n;}cat(e,t){if(this.currentFile)throw new Error("Can't open file when another file is open");if(e.includes("/"))throw new Error(`Change file path separatly: ${e}`);let n=P.normalize(`${this.currentDir}/${e}`);try{let o=this.onDiskOpenFile(n);this.logger()?.debug(`cat > '${n}'`),this.currentFile={descriptor:o,relPath:n},this.writtenFilesBuffer[this.currentFile.relPath]={relPath:n,absPath:P.resolve(n),tokens:[]},t();}finally{this.currentFile&&this.onDiskCloseFile(this.currentFile.descriptor),this.currentFile=void 0;}}write(e){if(!this.currentFile)throw new Error("No file opened");this.onDiskWrite(this.currentFile.descriptor,e);let t=this.writtenFilesBuffer[this.currentFile.relPath];if(!t)throw new Error("No buffer found");t.tokens.push(e);}writtenFiles(){return Object.values(this.writtenFilesBuffer).map(({relPath:e,absPath:t,tokens:n})=>({relPath:e,absPath:t,content:n.join()})).sort((e,t)=>e.relPath.localeCompare(t.relPath))}},A=class extends ke{currentIndent=0;indent(){this.currentIndent+=this.opts.tabSize;}deindent(){this.currentIndent-=this.opts.tabSize;}writeIndent(){this.write(" ".repeat(this.currentIndent));}line(...e){e.length===0?this.write(`
 `):(this.writeIndent(),this.write(`${e.join(" ")}
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-`);for(let r of t)this.line(this.opts.commentLinePrefix,r);}debugComment(...e){this.opts.withDebugComment&&(e=e.map(t=>typeof t=="string"?t:JSON.stringify(t,null,2)),this.comment(...e));}disclaimer(){return ["WARNING: This file is autogenerated by @atomic-ehr/codegen.","GitHub: https://github.com/atomic-ehr/codegen","Any manual changes made to this file may be overwritten."]}generateDisclaimer(){this.disclaimer().forEach(e=>{this.comment(e);}),this.line();}indentBlock(e){this.indent(),e(),this.deindent();}curlyBlock(e,t,r){this.line(`${e.filter(Boolean).join(" ")} {`),this.indent(),t(),this.deindent(),this.line(`}${r?.filter(Boolean).join(" ")??""}`);}squareBlock(e,t,r){this.line(`${e.filter(Boolean).join(" ")} [`),this.indent(),t(),this.deindent(),this.line(`]${r?.filter(Boolean).join(" ")??""}`);}};var ne=(n,e=true)=>{let t=n.split("/").pop();if(t&&(e&&t.includes("#")&&(t=t.split("#")[0]),!!t))return /^\d/.test(t)&&(t=`number_${t}`),t},S=n=>`${n.name}#${n.version}`,ke=n=>`${n.name}@${n.version}`;var Re=(n,e)=>(e||(e={name:"undefined",version:"undefined"}),{...n,package_meta:n.package_meta||e,name:n.name,url:n.url,base:n.base}),Ce=n=>n?.kind==="primitive-type",N=n=>n?.kind==="nested",Xe=n=>n?.kind==="profile";var A=n=>n?.identifier.kind==="resource"||n?.identifier.kind==="complex-type"||n?.identifier.kind==="logical",Ye=n=>n?.identifier.kind==="complex-type",$=n=>n?.identifier.kind==="resource",Ze=n=>n?.identifier.kind==="primitive-type",O=n=>n?.identifier.kind==="logical",re=n=>n?.identifier.kind==="profile";function Qe(n){return n?.identifier.kind==="binding"}function et(n){return n?.identifier.kind==="value-set"}var W=n=>n?n.choices===void 0:false,_=n=>n?n.choices!==void 0:false,xe=n=>n?.resourceType==="ValueSet",tt=n=>n?.resourceType==="CodeSystem",nt=(n,e)=>{if(!n.url)throw new Error("ValueSet must have a URL");if(!n.name)throw new Error("ValueSet must have a name");return {...n,package_meta:n.package_meta||e,name:n.name,url:n.url}};var rt={"!":"Not","<=":"LessOrEqual",">=":"GreaterOrEqual","<":"Less",">":"Greater","=":"Equal","-":"Dash","+":"Plus","*":"Asterisk","/":"Slash","%":"Percent","&":"And","|":"Or","^":"Xor","~":"Tilde","?":"Question",".":"Dot"};function Lt(n){return n.split("-").map(e=>w(e)).join("-")}function jt(n){let e=n;for(let t in rt)e=e.replaceAll(t,rt[t]??"");return e}function Vt(n){let e=Number(n[0]);return Number.isInteger(e)&&!Number.isNaN(e)?`_${n}`:n}function it(n){let e=Lt(n);return e=Vt(e),e=jt(e),e=w(e),e}function P(n){return w(Je(n.replaceAll(".","-")))}var Bt={boolean:"bool",instant:"string",time:"string",date:"string",dateTime:"string",decimal:"decimal",integer:"int",unsignedInt:"long",positiveInt:"long",integer64:"long",base64Binary:"string",uri:"string",url:"string",canonical:"string",oid:"string",uuid:"string",string:"string",code:"string",markdown:"string",id:"string",xhtml:"string"},Ut=["Reference","Expression"],Ht=n=>n.required?["required"]:[],At=n=>{let e=ct(at(n.identifier));return w(e)},_t=n=>n.base?`: ${n.base.name}`:"",Gt=(n,e=true)=>{if(!n)return;let t=n.split("/").pop();if(t&&(e&&t.includes("#")&&(t=t.split("#")[0]),!!t))return /^\d/.test(t)&&(t=`number_${t}`),P(t)},at=n=>{if(n.kind==="nested"){let e=n.url,t=Gt(e,false);if(!t)return "";let[r,o]=t.split("#"),i=te((o??"").split(".")).join("");return P([r,i].join(""))}return P(n.name)},zt=n=>Ut.includes(n),ct=n=>zt(n)?`Resource${n}`:n,ie=class extends H{enums={};constructor(e){super({tabSize:4,withDebugComment:false,commentLinePrefix:"//",...e});}async generate(e){let t=e.collectComplexTypes(),r=e.collectResources(),o=Array.from(new Set(r.map(i=>P(i.identifier.package))));this.generateAllFiles(t,r,o),this.copyStaticFiles();}generateAllFiles(e,t,r){this.generateUsingFile(r),this.generateBaseTypes(e),this.generateResources(t),this.generateEnumFiles(r),this.generateResourceDictionaries(t,r),this.generateHelperFile();}generateType(e,t){let r=At(e),o=_t(e);this.curlyBlock(["public","class",r,o],()=>{this.generateFields(e,t),this.generateNestedTypes(e,t),this.line(),this.includeHelperMethods();}),this.line();}generateFields(e,t){if(!e.fields)return;let r=Object.entries(e.fields).sort(([o],[i])=>o.localeCompare(i));for(let[o,i]of r)this.generateField(o,i,t);}generateNestedTypes(e,t){if(!(!("nested"in e)||!e.nested)){this.line();for(let r of e.nested)this.generateType(r,t);}}generateField(e,t,r){try{if(_(t))return;let o=this.buildFieldDeclaration(e,t,r);this.line(...o);}catch(o){this.logger()?.error(`Error processing field ${e}: ${o.message}`);}}buildFieldDeclaration(e,t,r){let o=this.determineFieldType(e,t,r),i=Ht(t),s=L(e);return ["public",...i,o,s,"{ get; set; }"].filter(Boolean)}determineFieldType(e,t,r){let o=this.getBaseTypeName(t);"enum"in t&&t.enum&&(o=this.registerAndGetEnumType(e,t,r)),o=ct(o);let i="",s=t.required?"":"?",c=t.array?"[]":"";return `${i}${o}${c}${s}`}getBaseTypeName(e){if("type"in e){let t=e.type.name.toString();return e.type.kind==="nested"?t=at(e.type):e.type.kind==="primitive-type"&&(t=Bt[e.type.name]??"string"),t}return ""}registerAndGetEnumType(e,t,r){let i=`${P(t.binding?.name??e)}Enum`;return this.enums[r]||(this.enums[r]={}),t.enum&&(this.enums[r][i]=t.enum),i}includeHelperMethods(){this.line("public override string ToString() => "),this.line("    JsonSerializer.Serialize(this, Helper.JsonSerializerOptions);"),this.line();}generateUsingFile(e){this.cd("/",async()=>{this.cat("Usings.cs",()=>{this.generateDisclaimer(),this.generateGlobalUsings(e);});});}generateGlobalUsings(e){let t=["CSharpSDK","System.Text.Json","System.Text.Json.Serialization",this.opts.targetNamespace,...e.map(r=>`${this.opts.targetNamespace}.${r}`)];for(let r of t)this.lineSM("global","using",r);}generateBaseTypes(e){this.cd("/",async()=>{this.cat("base.cs",()=>{this.generateDisclaimer(),this.line(),this.lineSM("namespace",this.opts.targetNamespace);for(let t of e){let r=P(t.identifier.package);this.generateType(t,r);}});});}generateResources(e){for(let t of e)this.generateResourceFile(t);}generateResourceFile(e){let t=P(e.identifier.package);this.cd(`/${t}`,async()=>{this.cat(`${e.identifier.name}.cs`,()=>{this.generateDisclaimer(),this.line(),this.lineSM("namespace",`${this.opts.targetNamespace}.${t}`),this.line(),this.generateType(e,t);});});}generateEnumFiles(e){for(let t of e)this.generatePackageEnums(t);}generatePackageEnums(e){let t=this.enums[e];!t||Object.keys(t).length===0||this.cd(`/${e}`,async()=>{this.cat(`${e}Enums.cs`,()=>{this.generateDisclaimer(),this.generateEnumFileContent(e,t);});});}generateEnumFileContent(e,t){this.lineSM("using","System.ComponentModel"),this.line(),this.lineSM(`namespace ${this.opts.targetNamespace}.${e}`);for(let[r,o]of Object.entries(t))this.generateEnum(r,o);}generateEnum(e,t){this.curlyBlock(["public","enum",e],()=>{for(let r of t)this.line(`[Description("${r}")]`),this.line(`${it(r)},`);}),this.line();}generateResourceDictionaries(e,t){this.cd("/",async()=>{for(let r of t){let o=e.filter(i=>P(i.identifier.package)===r);if(o.length===0)return;this.cat(`${r}ResourceDictionary.cs`,()=>{this.generateDisclaimer(),this.line(),this.lineSM(`namespace ${this.opts.targetNamespace}`),this.generateResourceDictionaryClass(r,o);});}});}generateResourceDictionaryClass(e,t){this.curlyBlock(["public","static","class","ResourceDictionary"],()=>{this.curlyBlock(["public static readonly Dictionary<Type, string> Map = new()"],()=>{for(let r of t){let o=r.identifier.name;this.line(`{ typeof(${e}.${o}), "${o}" },`);}}),this.lineSM();});}copyStaticFiles(){if(!this.opts.staticSourceDir)return;let e=F__default.resolve(this.opts.staticSourceDir);x__default.cpSync(e,this.opts.outputDir,{recursive:true});}generateHelperFile(){let e="src/api/writer-generator/csharp/Helper.cs",t=F__default.join(this.opts.outputDir,"Helper.cs");x__default.copyFileSync(e,t);}};var Wt=async(n,e)=>{let r=(await n.packageJson(e.name)).dependencies;return r!==void 0?Object.entries(r).map(([o,i])=>({name:o,version:i})):[]},dt=n=>({pkg:n,canonicalResolution:{},fhirSchemas:{},valueSets:{}}),ut=async(n,e,t,r,o)=>{let i=S(e);if(o?.info(`${" ".repeat(t*2)}+ ${i}`),r[i])return r[i];let s=dt(e);for(let a of await n.search({package:e})){let l=a.url;if(!l||!(isStructureDefinition(a)||xe(a)||tt(a)))continue;let u=l;s.canonicalResolution[u]&&o?.dry_warn(`Duplicate canonical URL: ${u} at ${i}.`),s.canonicalResolution[u]=[{deep:t,pkg:e,pkgId:i,resource:a}];}let c=await Wt(n,e);for(let a of c){let{canonicalResolution:l}=await ut(n,a,t+1,r,o);for(let[u,h]of Object.entries(l)){let m=u;s.canonicalResolution[m]=[...s.canonicalResolution[m]||[],...h];}}for(let a of Object.values(s.canonicalResolution))a.sort((l,u)=>l.deep-u.deep);return r[i]=s,s},lt=(n,e,t)=>{let r=Object.values(n).flatMap(o=>o.canonicalResolution[e]);if(!r)throw new Error(`No canonical resolution found for ${e} in any package`);return r[0]?.resource},q=async(n,{logger:e,fallbackPackageForNameResolution:t,focusedPackages:r})=>{let o=r??await n.packages(),i={};for(let d of o)await ut(n,d,0,i,e);for(let{pkg:d,canonicalResolution:g}of Object.values(i)){let p=S(d);if(!i[p])throw new Error(`Package ${p} not 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o=t.slice(0,-1),i=n.resolveFsGenealogy(e.package_meta,e.url).flatMap(s=>{if(o.length===0)return s.required||[];if(!s.elements)return [];let c=s;for(let a of o)c=c?.elements?.[a];return c?.required||[]});return new Set(i).has(r)}function ht(n,e,t){let r=t[t.length-1];if(!r)throw new Error(`Internal error: fieldName is missing for path ${t.join("/")}`);let o=t.slice(0,-1),i=n.resolveFsGenealogy(e.package_meta,e.url).flatMap(s=>{if(o.length===0)return s.excluded||[];if(!s.elements)return [];let c=s;for(let a of o)c=c?.elements?.[a];return c?.excluded||[]});return new Set(i).has(r)}var Qt=(n,e,t)=>{if(t.refers)return t.refers.map(r=>{let o=n.ensureSpecializationCanonicalUrl(r),i=n.resolveFs(e.package_meta,o);if(!i)throw new Error(`Failed to resolve fs for ${o}`);return j(i)})};function $e(n,e,t,r,o){if(r.elementReference){let i=r.elementReference.slice(1).filter((s,c)=>c%2===1);return ae(n,e,i,o)}else if(r.type){let 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o(a,c)},i=o(r,{});return De(i,t)},cn=n=>{let e=n.filter(i=>$(i)||O(i)),t=[];for(let i of e)i.base&&t.push({parent:i.base,child:i.identifier});let r=[...t],o=i=>{let s=t.filter(a=>a.parent.name===i.name).map(a=>a.child),c=[];for(let a of s)c.push(...o(a));return [...s,...c]};for(let i of t){let s=o(i.child);for(let c of s)t.some(a=>a.parent.name===i.parent.name&&a.child.name===c.name)||r.push({parent:i.parent,child:c});}return r},De=(n,e)=>{let t={},r=p=>{let f=p.identifier.url,y=p.identifier.package;if(t[f]||(t[f]={}),t[f][p.identifier.package]&&y!=="shared"){let T=JSON.stringify(p.identifier,void 0,2),v=JSON.stringify(t[f][y]?.identifier,void 0,2);if(T!==v)throw new Error(`Duplicate schema: ${T} and ${v}`);return}t[f][y]=p;};for(let p of n)r(p);let o=cn(n),i=p=>t[p.url]?.[p.package],s=(p,f)=>t[f]?.[p],c=p=>o.filter(f=>f.parent.name===p.name).map(f=>f.child),a=p=>{let f=[],y=p;for(;y;){f.push(y);let T=y.base;if(T===void 0)break;let v=i(T);if(!v){e?.warn(`Failed to resolve base type: 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Q=R;if(Q.fields)for(let[ee,He]of Object.entries(Q.fields))v[ee]?v[ee]={...v[ee],...He}:v[ee]={...He};}let C={};for(let R of y.flatMap(Q=>Q.dependencies??[]))C[R.url]=R;let Z=Object.values(C);return {...p,base:T.identifier,fields:v,dependencies:Z}},isWithMetaField:p=>{let f=a(p);return f?f.filter(A).some(y=>y.fields?.meta!==void 0):false},exportTree:async p=>{let f={};for(let[T,v]of Object.entries(Oe(n))){f[T]={"primitive-type":{},"complex-type":{},resource:{},"value-set":{},nested:{},binding:{},profile:{},logical:{}};for(let C of v)f[T][C.identifier.kind][C.identifier.url]={};}let y=p.endsWith(".yaml")?vt.stringify(f):JSON.stringify(f,void 0,2);await D.mkdir(F.dirname(p),{recursive:true}),await D.writeFile(p,y);}}};var K=class{manager;options;logger;constructor(e={}){this.options={verbose:false,...e},this.manager=e.manager||CanonicalManager({packages:[],workingDir:"tmp/fhir"}),this.logger=e.logger||E({verbose:this.options.verbose,prefix:"TypeSchema"});}async 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FHIR Schema generator output broken value in it, so we just skip it for now."}},Ct=async(n,e)=>{let t=[];for(let r of n.allFs()){let o=S(r.package_meta);if(Rt[o]?.[r.url]){e?.dry_warn(`Skip ${r.url} from ${o}. Reason: ${Rt[o]?.[r.url]}`);continue}t.push(...await de(n,r,e));}for(let r of n.allVs())t.push(await pe(n,r));return t};var dn={boolean:"boolean",instant:"string",time:"string",date:"string",dateTime:"string",decimal:"number",integer:"number",unsignedInt:"number",positiveInt:"number",integer64:"number",base64Binary:"string",uri:"string",url:"string",canonical:"string",oid:"string",uuid:"string",string:"string",code:"string",markdown:"string",id:"string",xhtml:"string"},xt=n=>{let e=dn[n];if(e===void 0)throw new Error(`Unknown primitive type ${n}`);return e},un=n=>z(n),It=n=>n.kind==="profile"?`${k(n)}_profile`:L(n.name),fn=n=>`${It(n)}.ts`,Me=(n,e=true)=>{if(!n)return;let t=ne(n,e);if(t)return Le(t)},k=n=>{if(n.kind==="nested"){let e=n.url,t=Me(e,false);if(!t)return "";let[r,o]=t.split("#"),i=te((o??"").split(".")).join("");return Le([r,i].join(""))}return Le(n.name)},wt=new Set(["class","function","return","if","for","while","const","let","var","import","export","interface"]),G=n=>wt.has(n)?`"${n}"`:n.includes(" ")||n.includes("-")?`"${n}"`:n,Le=n=>(wt.has(n)&&(n=`${n}_`),n.replace(/[- ]/g,"_")),V=(n,e)=>e.startsWith('"')?`${n}[${e}]`:`${n}.${e}`,Ft=n=>`(${n.map(e=>`"${e}"`).join(" | ")})`,fe=class extends H{tsImportType(e,...t){this.lineSM(`import type { ${t.join(", ")} } from "${e}"`);}generateFhirPackageIndexFile(e){this.cat("index.ts",()=>{let t=e.flatMap(r=>[{identifier:r.identifier,tsPackageName:It(r.identifier),resourceName:k(r.identifier),nestedTypes:$(r)&&r.nested||O(r)&&r.nested?r.nested.map(o=>k(o.identifier)):[],helpers:$(r)||O(r)?[`is${k(r.identifier)}`]:[]}]).sort((r,o)=>r.resourceName.localeCompare(o.resourceName));t=Array.from(new Map(t.map(r=>[r.resourceName.toLowerCase(),r])).values()).sort((r,o)=>r.resourceName.localeCompare(o.resourceName));for(let r of t)this.debugComment(r.identifier),this.lineSM(`export type { ${[r.resourceName,...r.nestedTypes].join(", ")} } from "./${r.tsPackageName}"`),r.helpers.length>0&&this.lineSM(`export { ${r.helpers.join(", ")} } from "./${r.tsPackageName}"`);});}generateDependenciesImports(e){if(e.dependencies){let t=[],r=[];for(let o of e.dependencies)["complex-type","resource","logical"].includes(o.kind)?t.push({tsPackage:`../${z(o.package)}/${L(o.name)}`,name:w(o.name),dep:o}):N(o)?t.push({tsPackage:`../${z(o.package)}/${L(Me(o.url)??"")}`,name:k(o),dep:o}):r.push(o);t.sort((o,i)=>o.name.localeCompare(i.name));for(let o of t)this.debugComment(o.dep),this.tsImportType(o.tsPackage,o.name);for(let o of r)this.debugComment("skip:",o);this.line();}}generateComplexTypeReexports(e){let t=e.dependencies?.filter(r=>["complex-type"].includes(r.kind)).map(r=>({tsPackage:`../${z(r.package)}/${L(r.name)}`,name:w(r.name)}));if(t&&t.length>0){for(let r of t)this.lineSM(`export type { ${r.name} } from "${r.tsPackage}"`);this.line();}}addFieldExtension(e,t){if(t.type.kind==="primitive-type"){let r=G(`_${e}`);this.lineSM(`${r}?: Element`);}}generateType(e,t){let r;t.identifier.name==="Reference"?r="Reference<T extends string = string>":(t.identifier.kind,r=k(t.identifier));let o;if(t.base&&(o=`extends ${Me(t.base.url)}`),this.debugComment(t.identifier),!t.fields&&!o&&!$(t)){this.lineSM(`export type ${r} = object`);return}this.curlyBlock(["export","interface",r,o],()=>{if($(t)||O(t)){let s=[t.identifier];s.push(...e.resourceChildren(t.identifier));let c=this.opts.openResourceTypeSet&&s.length>1?" | string":"";this.lineSM(`resourceType: ${s.sort((a,l)=>a.name.localeCompare(l.name)).map(a=>`"${a.name}"`).join(" | ")}${c}`),this.line();}if(!t.fields)return;let i=Object.entries(t.fields).sort((s,c)=>s[0].localeCompare(c[0]));for(let[s,c]of i){if(_(c))continue;this.debugComment(s,":",c);let a=G(s),l;c.enum?l=Ft(c.enum):t.identifier.name==="Reference"&&a==="reference"?l="`${T}/${string}`":c.reference&&c.reference.length>0?l=`Reference<${c.reference.map(d=>`"${d.name}"`).join(" | ")}>`:Ce(c.type)?l=xt(c.type.name):N(c.type)?l=k(c.type):l=c.type.name;let u=c.required?"":"?",h=c.array?"[]":"";this.lineSM(`${a}${u}: ${l}${h}`),["resource","complex-type"].includes(t.identifier.kind)&&this.addFieldExtension(s,c);}});}generateResourceTypePredicate(e){if(!$(e)&&!O(e))return;let t=k(e.identifier);this.curlyBlock(["export","const",`is${t}`,"=",`(resource: unknown): resource is ${t}`,"=>"],()=>{this.lineSM(`return resource !== null && typeof resource === "object" && (resource as {resourceType: string}).resourceType === "${e.identifier.name}"`);});}generateNestedTypes(e,t){if(t.nested)for(let r of t.nested)this.generateType(e,r),this.line();}generateProfileType(e,t){this.debugComment("flatProfile",t);let r=k(t.identifier);this.debugComment("identifier",t.identifier),this.debugComment("base",t.base),this.curlyBlock(["export","interface",r],()=>{this.lineSM(`__profileUrl: "${t.identifier.url}"`),this.line();for(let[o,i]of Object.entries(t.fields??{})){if(_(i))continue;this.debugComment(o,i);let s=G(o),c;if(i.enum)c=Ft(i.enum);else if(i.reference&&i.reference.length>0){let a=e.findLastSpecialization(t);if(!A(a))throw new Error(`Invalid specialization for ${t.identifier}`);let l=a.fields?.[o];if(l===void 0||_(l)||l.reference===void 0)throw new Error(`Invalid field declaration for ${o}`);let u=l.reference.map(m=>m.name),h=i.reference.map(m=>{let d=e.findLastSpecializationByIdentifier(m);return d.name!==m.name?`"${d.name}" /*${m.name}*/`:`'${m.name}'`}).join(" | ");u.length===1&&u[0]==="Resource"&&h!=='"Resource"'?c=`Reference<"Resource" /* ${h} */ >`:c=`Reference<${h}>`;}else if(N(i.type))c=k(i.type);else if(Ce(i.type))c=xt(i.type.name);else {if(i.type===void 0)throw new Error(`Undefined type for '${o}' field at ${Ke(t)}`);c=i.type.name;}this.lineSM(`${s}${i.required?"":"?"}: ${c}${i.array?"[]":""}`);}}),this.line();}generateAttachProfile(e){let t=k(e.base),r=k(e.identifier),o=Object.entries(e.fields||{}).filter(([i,s])=>s&&W(s)&&s.type!==void 0).map(([i])=>G(i));this.curlyBlock([`export const attach_${r}_to_${t} =`,`(resource: ${t}, profile: ${r}): ${t}`,"=>"],()=>{this.curlyBlock(["return"],()=>{this.line("...resource,"),this.curlyBlock(["meta:"],()=>{this.line(`profile: ['${e.identifier.url}']`);},[","]),o.forEach(i=>{this.line(`${i}: ${V("profile",i)},`);});});}),this.line();}generateExtractProfile(e,t){let r=k(t.base),o=k(t.identifier),i=Object.entries(t.fields||{}).filter(([a,l])=>W(l)&&l.type!==void 0).map(([a])=>a),s=e.findLastSpecialization(t);if(!A(s))throw new Error(`Specialization not found for ${t.identifier.url}`);let c={};this.curlyBlock([`export const extract_${o}_from_${r} =`,`(resource: ${r}): ${o}`,"=>"],()=>{i.forEach(a=>{let l=G(a),u=t.fields?.[a],h=s.fields?.[a];if(!W(u)||!W(h))return;u.required&&!h.required&&this.curlyBlock([`if (${V("resource",l)} === undefined)`],()=>this.lineSM(`throw new Error("'${l}' is required for ${t.identifier.url}")`));let m=u?.reference?.map(g=>g.name),d=h?.reference?.map(g=>g.name);if(m&&d&&m.length!==d.length){let g=`reference_is_valid_${l}`;this.curlyBlock(["const",g,"=","(ref?: Reference)","=>"],()=>{this.line("return !ref"),this.indentBlock(()=>{d.forEach(f=>{this.line(`|| ref.reference?.startsWith('${f}/')`);}),this.line(";");});});let p=u?.required?"":`!${V("resource",l)} || `;u.array?p+=`${V("resource",l)}.every( (ref) => ${g}(ref) )`:p+=`!${g}(${V("resource",l)})`,this.curlyBlock(["if (",p,")"],()=>{this.lineSM(`throw new Error("'${a}' has different references in profile and specialization")`);}),this.line(),c[a]=true;}}),this.curlyBlock(["return"],()=>{this.line(`__profileUrl: '${t.identifier.url}',`),i.forEach(a=>{let l=G(a);c[a]?this.line(`${l}:`,`${V("resource",l)} as ${o}['${l}'],`):this.line(`${l}:`,`${V("resource",l)},`);});});});}generateResourceModule(e,t){this.cat(`${fn(t.identifier)}`,()=>{if(this.generateDisclaimer(),["complex-type","resource","logical"].includes(t.identifier.kind))this.generateDependenciesImports(t),this.generateComplexTypeReexports(t),this.generateNestedTypes(e,t),this.comment("CanonicalURL:",t.identifier.url),this.generateType(e,t),this.generateResourceTypePredicate(t);else if(re(t)){let r=e.flatProfile(t);this.generateDependenciesImports(r),this.comment("CanonicalURL:",t.identifier.url),this.generateProfileType(e,r),this.generateAttachProfile(r),this.generateExtractProfile(e,r);}else throw new Error(`Profile generation not implemented for kind: ${t.identifier.kind}`)});}async generate(e){let t=[...e.collectComplexTypes(),...e.collectResources(),...e.collectLogicalModels(),...this.opts.generateProfile?e.collectProfiles().filter(o=>e.isWithMetaField(o)):[]],r=Oe(t);this.cd("/",()=>{for(let[o,i]of Object.entries(r)){let s=un(o);this.cd(s,()=>{for(let c of i)this.generateResourceModule(e,c);this.generateFhirPackageIndexFile(i);});}});}};var $t=n=>{let e=()=>n.writtenFiles().map(t=>({path:F.normalize(F.join(n.opts.outputDir,t)),filename:t.replace(/^.*[\\/]/,""),timestamp:new Date}));return {generate:async({index:t})=>(await n.generate(t),e()),setOutputDir:t=>n.opts.outputDir=t,build:async t=>e()}},Pt=n=>{let e=n.replace(/[^a-zA-Z0-9\-_.@#()]/g,"");return e.length===0?"unknown":e},mn=async(n,e)=>{e.info("Cleaning outputs...");try{e.info(`Clean ${n.outputDir}`),x.rmSync(n.outputDir,{recursive:!0,force:!0}),n.typeSchemaOutputDir&&(e.info(`Clean ${n.typeSchemaOutputDir}`),x.rmSync(n.typeSchemaOutputDir,{recursive:!0,force:!0})),n.exportTypeTree&&(e.info(`Clean ${n.exportTypeTree}`),x.rmSync(n.exportTypeTree,{recursive:!0,force:!0}));}catch(t){e.warn(`Error cleaning output directory: ${t instanceof Error?t.message:String(t)}`);}},hn=async(n,e,t)=>{await D.mkdir(e,{recursive:true}),t.info(`Writing TypeSchema files to ${e}/...`);let r={};for(let o of n){let i={name:o.identifier.package,version:o.identifier.version},s=Pt(S(i)),c=Pt(`${o.identifier.name}(${ne(o.identifier.url)})`),a=JSON.stringify(o,null,2),l=F.join(e,s,c);r[l]||(r[l]=[]),r[l]?.some(u=>u===a)||r[l].push(a);}for(let[o,i]of Object.entries(r))await Promise.all(i.map(async(s,c)=>{let a;c===0?a=`${o}.typeschema.json`:a=`${o}-${c}.typeschema.json`,await D.mkdir(F.dirname(a),{recursive:true}),await D.writeFile(a,s);}));},yn=async(n,e,t)=>{t.info(`Writing TypeSchema files to: ${e}`),await D.mkdir(F.dirname(e),{recursive:true}),t.info(`Writing TypeSchemas to one file ${e}...`);for(let r of n){let o=JSON.stringify(r,null,2);await D.appendFile(e,`${o}
-`);}},Sn=async(n,e,t)=>{if(e.typeSchemaOutputDir)try{F.extname(e.typeSchemaOutputDir)===".ndjson"?await yn(n,e.typeSchemaOutputDir,t):await hn(n,e.typeSchemaOutputDir,t),t.info("Writing TypeSchema - DONE");}catch(r){if(t.error("Failed to write TypeSchema output",r instanceof Error?r:new Error(String(r))),e.throwException)throw r}},Y=class{schemas=[];options;generators=new Map;logger;packages=[];progressCallback;typeSchemaConfig;constructor(e={}){this.options={outputDir:e.outputDir||"./generated",verbose:e.verbose??false,overwrite:e.overwrite??true,cache:e.cache??true,cleanOutput:e.cleanOutput??true,typeSchemaConfig:e.typeSchemaConfig,manager:e.manager||null,throwException:e.throwException||false,typeSchemaOutputDir:e.typeSchemaOutputDir,exportTypeTree:e.exportTypeTree,treeShake:e.treeShake},this.typeSchemaConfig=e.typeSchemaConfig,this.logger=e.logger||E({verbose:this.options.verbose,prefix:"API"});}fromPackage(e,t){let r=ke({name:e,version:t||"latest"});return this.packages.push(r),this}fromPackageRef(e){return this.packages.push(e),this}fromSchemas(e){return this.logger.debug(`Adding ${e.length} TypeSchemas to generation`),this.schemas=[...this.schemas,...e],this}typescript(e){let o={...{...{logger:this.logger,outputDir:F.join(this.options.outputDir,"/types"),tabSize:4,withDebugComment:false,commentLinePrefix:"//",generateProfile:true},openResourceTypeSet:false},...Object.fromEntries(Object.entries(e).filter(([s,c])=>c!==void 0))},i=$t(new fe(o));return this.generators.set("typescript",i),this.logger.debug(`Configured TypeScript generator (${JSON.stringify(o,void 0,2)})`),this}csharp(e,t){let r=$t(new ie({outputDir:F.join(this.options.outputDir,"/types"),staticSourceDir:t??void 0,targetNamespace:e,logger:new B({prefix:"C#",timestamp:true,verbose:true,suppressLoggingLevel:[]})}));return this.generators.set("C#",r),this.logger.debug("Configured C# generator"),this}onProgress(e){return this.progressCallback=e,this}outputTo(e){this.logger.debug(`Setting output directory: ${e}`),this.options.outputDir=e;for(let t of this.generators.values())t.setOutputDir&&t.setOutputDir(e);return this}verbose(e=true){return this.options.verbose=e,this.logger?.configure({verbose:e}),this}throwException(e=true){return this.options.throwException=e,this}cleanOutput(e=true){return this.options.cleanOutput=e,this}writeTypeTree(e){return this.options.exportTypeTree=e,this}treeShake(e){return this.options.treeShake=e,this}writeTypeSchemas(e){return this.options.typeSchemaOutputDir=e,this}async generate(){let e=performance.now(),t={success:false,outputDir:this.options.outputDir,filesGenerated:[],errors:[],warnings:[],duration:0};this.logger.debug(`Starting generation with ${this.generators.size} generators`);try{this.options.cleanOutput&&mn(this.options,this.logger),this.logger.info("Initialize Canonical Manager");let r=CanonicalManager({packages:this.packages,workingDir:".codegen-cache/canonical-manager-cache"}),o=await r.init(),i=Object.values(o),s=await q(r,{logger:this.logger,focusedPackages:i}),c=await Ct(s,this.logger);await Sn(c,this.options,this.logger);let a=De(c,this.logger);this.options.treeShake&&(a=Tt(a,this.options.treeShake,this.logger)),this.options.exportTypeTree&&await a.exportTree(this.options.exportTypeTree),this.logger.debug(`Executing ${this.generators.size} generators`),await this.executeGenerators(t,{schemas:c,index:a}),this.logger.info("Generation completed successfully"),t.success=t.errors.length===0,this.logger.debug(`Generation completed: ${t.filesGenerated.length} files`);}catch(r){if(this.logger.error("Code generation failed",r instanceof Error?r:new Error(String(r))),t.errors.push(r instanceof Error?r.message:String(r)),this.options.throwException)throw r}return {...t,success:t.errors.length===0,duration:performance.now()-e}}async build(){let e={};for(let[t,r]of this.generators.entries())r.build&&(e[t]=await r.build(this.schemas));return e}reset(){return this.schemas=[],this.generators.clear(),this.progressCallback=void 0,this}getSchemas(){return [...this.schemas]}getGenerators(){return Array.from(this.generators.keys())}async executeGenerators(e,t){for(let[r,o]of this.generators.entries()){this.logger.info(`Generating ${r}...`);try{let i=await o.generate(t);e.filesGenerated.push(...i.map(s=>s.path||s.filename)),this.logger.info(`Generating ${r} finished successfully`);}catch(i){if(e.errors.push(`${r} generator failed: ${i instanceof Error?i.message:String(i)}`),this.options.throwException)throw i}}}};var je={outputDir:"./generated",verbose:false,overwrite:true,validate:true,cache:true,cleanOutput:true,typescript:{moduleFormat:"esm",generateIndex:true,includeDocuments:false,namingConvention:"PascalCase",strictMode:true,includeProfiles:true,includeExtensions:false,includeCodeSystems:false,includeOperations:false,generateValueSets:false,valueSetDirectory:"valuesets",valueSetMode:"required-only",valueSetStrengths:["required"],includeValueSetHelpers:false,fhirVersion:"R4",resourceTypes:[],maxDepth:10,profileOptions:{generateKind:"interface",includeConstraints:true,includeDocumentation:true,strictMode:false,subfolder:"profiles"},generateBuilders:false,builderOptions:{includeValidation:true,includeFactoryMethods:true,includeInterfaces:true,generateNestedBuilders:true,includeHelperMethods:true,supportPartialBuild:true,includeJSDoc:true,generateFactories:true,includeTypeGuards:true,handleChoiceTypes:true,generateArrayHelpers:true},validatorOptions:{includeCardinality:true,includeTypes:true,includeConstraints:true,includeInvariants:false,validateRequired:true,allowAdditional:false,strictValidation:false,collectMetrics:false,generateAssertions:true,generatePartialValidators:true,optimizePerformance:true,includeJSDoc:true,generateCompositeValidators:true},guardOptions:{includeRuntimeValidation:true,includeErrorMessages:true,treeShakeable:true,targetTSVersion:"5.0",strictGuards:false,includeNullChecks:true,verbose:false}},typeSchema:{enablePersistence:true,cacheDir:".typeschema-cache",maxAge:1440*60*1e3,validateCached:true,forceRegenerate:false,shareCache:true,cacheKeyPrefix:"",treeshake:[],singleFile:false,profiles:{autoDetect:true}},packages:[],files:[],$schema:""},me=["atomic-codegen.config.ts","atomic-codegen.config","atomic-codegen.config.json",".atomic-codegenrc","atomic-codegen.json",".atomic-codegen.json","codegen.config.json","codegen.json"],Ve=class{validate(e){let t={valid:true,errors:[],warnings:[]};if(!e||typeof e!="object")return t.valid=false,t.errors.push({path:"root",message:"Configuration must be an object",value:e}),t;let r=e;r.outputDir!==void 0&&typeof r.outputDir!="string"&&t.errors.push({path:"outputDir",message:"outputDir must be a string",value:r.outputDir});let o=["verbose","overwrite","validate","cache"];for(let i of o)r[i]!==void 0&&typeof r[i]!="boolean"&&t.errors.push({path:i,message:`${i} must be a boolean`,value:r[i]});if(r.typescript!==void 0){let i=this.validateTypeScriptConfig(r.typescript);t.errors.push(...i);}if(r.typeSchema!==void 0){let i=this.validateTypeSchemaConfig(r.typeSchema);t.errors.push(...i);}return r.packages!==void 0&&(Array.isArray(r.packages)?r.packages.forEach((i,s)=>{typeof i!="string"&&t.errors.push({path:`packages[${s}]`,message:"package name must be a string",value:i});}):t.errors.push({path:"packages",message:"packages must be an array",value:r.packages})),r.files!==void 0&&(Array.isArray(r.files)?r.files.forEach((i,s)=>{typeof i!="string"&&t.errors.push({path:`files[${s}]`,message:"file path must be a string",value:i});}):t.errors.push({path:"files",message:"files must be an array",value:r.files})),t.valid=t.errors.length===0,t.valid&&(t.config=r),t}validateTypeScriptConfig(e){let t=[];if(typeof e!="object"||e===null)return t.push({path:"typescript",message:"typescript config must be an object",value:e}),t;let r=e;r.moduleFormat!==void 0&&(["esm","cjs"].includes(r.moduleFormat)||t.push({path:"typescript.moduleFormat",message:'moduleFormat must be "esm" or "cjs"',value:r.moduleFormat})),r.namingConvention!==void 0&&(["PascalCase","camelCase"].includes(r.namingConvention)||t.push({path:"typescript.namingConvention",message:'namingConvention must be "PascalCase" or "camelCase"',value:r.namingConvention}));let o=["generateIndex","includeDocuments","strictMode","includeProfiles","includeExtensions","includeCodeSystems","includeOperations","generateValueSets","includeValueSetHelpers"];for(let i of o)r[i]!==void 0&&typeof r[i]!="boolean"&&t.push({path:`typescript.${i}`,message:`${i} must be a boolean`,value:r[i]});if(r.validatorOptions!==void 0){let i=this.validateValidatorOptions(r.validatorOptions);t.push(...i);}if(r.guardOptions!==void 0){let i=this.validateGuardOptions(r.guardOptions);t.push(...i);}if(r.profileOptions!==void 0){let i=this.validateProfileOptions(r.profileOptions);t.push(...i);}return t}validateValidatorOptions(e){let t=[];if(typeof e!="object"||e===null)return t.push({path:"typescript.validatorOptions",message:"validatorOptions must be an object",value:e}),t;let r=e,o=["includeCardinality","includeTypes","includeConstraints","includeInvariants","validateRequired","allowAdditional","strictValidation","collectMetrics","generateAssertions","generatePartialValidators","optimizePerformance","includeJSDoc","generateCompositeValidators"];for(let i of o)r[i]!==void 0&&typeof r[i]!="boolean"&&t.push({path:`typescript.validatorOptions.${i}`,message:`${i} must be a boolean`,value:r[i]});return t}validateGuardOptions(e){let t=[];if(typeof e!="object"||e===null)return t.push({path:"typescript.guardOptions",message:"guardOptions must be an object",value:e}),t;let r=e;r.targetTSVersion!==void 0&&(["3.8","4.0","4.5","5.0"].includes(r.targetTSVersion)||t.push({path:"typescript.guardOptions.targetTSVersion",message:'targetTSVersion must be one of: "3.8", "4.0", "4.5", "5.0"',value:r.targetTSVersion}));let o=["includeRuntimeValidation","includeErrorMessages","treeShakeable","strictGuards","includeNullChecks","verbose"];for(let i of o)r[i]!==void 0&&typeof r[i]!="boolean"&&t.push({path:`typescript.guardOptions.${i}`,message:`${i} must be a boolean`,value:r[i]});return t}validateProfileOptions(e){let t=[];if(typeof e!="object"||e===null)return t.push({path:"typescript.profileOptions",message:"profileOptions must be an object",value:e}),t;let r=e;r.generateKind!==void 0&&(["interface","type","both"].includes(r.generateKind)||t.push({path:"typescript.profileOptions.generateKind",message:'generateKind must be "interface", "type", or "both"',value:r.generateKind})),r.subfolder!==void 0&&typeof r.subfolder!="string"&&t.push({path:"typescript.profileOptions.subfolder",message:"subfolder must be a string",value:r.subfolder});let o=["includeConstraints","includeDocumentation","strictMode"];for(let i of o)r[i]!==void 0&&typeof r[i]!="boolean"&&t.push({path:`typescript.profileOptions.${i}`,message:`${i} must be a boolean`,value:r[i]});return t}validateTypeSchemaConfig(e){let t=[];if(typeof e!="object"||e===null)return t.push({path:"typeSchema",message:"typeSchema config must be an object",value:e}),t;let r=e,o=["enablePersistence","validateCached","forceRegenerate","shareCache"];for(let s of o)r[s]!==void 0&&typeof r[s]!="boolean"&&t.push({path:`typeSchema.${s}`,message:`${s} must be a boolean`,value:r[s]});let i=["cacheDir","cacheKeyPrefix"];for(let s of i)r[s]!==void 0&&typeof r[s]!="string"&&t.push({path:`typeSchema.${s}`,message:`${s} must be a string`,value:r[s]});if(r.maxAge!==void 0&&(typeof r.maxAge!="number"||r.maxAge<=0)&&t.push({path:"typeSchema.maxAge",message:"maxAge must be a positive number",value:r.maxAge}),r.profiles!==void 0)if(typeof r.profiles!="object"||r.profiles===null)t.push({path:"typeSchema.profiles",message:"profiles must be an object",value:r.profiles});else {let s=r.profiles;s.autoDetect!==void 0&&typeof s.autoDetect!="boolean"&&t.push({path:"typeSchema.profiles.autoDetect",message:"autoDetect must be a boolean",value:s.autoDetect});}return t}},Be=class{validator=new 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c=Ee(r,e.package_meta,i);if(!c||c.length===0)return;let a=c.map(l=>l.code).filter(l=>l&&typeof l=="string"&&l.trim().length>0);if(a.length>yt){n?.dry_warn(`Value set ${i} has ${a.length} which is more than ${yt} codes, which may cause issues with code generation.`);return}return a.length>0?a:void 0}function en(r,e,t,n,o){if(!n.binding?.valueSet)return;let i=ae(e,t,n.binding.bindingName),s=$e(r,e,t,n,o),c=se(r,e.package_meta,n.binding.valueSet),a=[];s&&a.push(s),a.push(c);let l=Pe(r,e,n,o);return {identifier:i,type:s,valueset:c,strength:n.binding.strength,enum:l,dependencies:a}}function St(r,e,t){let n=new Set;if(!e.elements)return [];let o=[];function i(a,l){for(let[u,h]of Object.entries(a)){let m=[...l,u],d=m.join(".");if(!n.has(d)){if(n.add(d),h.binding){let g=en(r,e,m,h,t);g&&o.push(g);}h.elements&&i(h.elements,m);}}}i(e.elements,[]),o.sort((a,l)=>a.identifier.name.localeCompare(l.identifier.name));let s=[],c=new Set;for(let a of o)c.has(a.identifier.url)||(c.add(a.identifier.url),s.push(a));return s}function tn(r,e,t,n,o){if(!n)return;let i={};for(let s of r.getAllElementKeys(n)){let c=[...t,s],a=r.resolveElementSnapshot(e,c);K(a)?i[s]=pe(r,e,c,a,o):i[s]=le(r,e,c,a,o);}return i}function nn(r){let e=[];for(let t of Object.values(r))"type"in t&&t.type&&e.push(t.type),"binding"in t&&t.binding&&e.push(t.binding);return e}function rn(r,e){return !!(r.base==="Extension"||r.base==="http://hl7.org/fhir/StructureDefinition/Extension"||r.url?.includes("/extension/")||r.url?.includes("-extension")||r.name?.toLowerCase().includes("extension")||r.type==="Extension")}async function de(r,e,t){if(!e.url)throw new Error("ValueSet URL is required");let n=se(r,e.package_meta,e.url),o=Ee(r,e.package_meta,e.url);return {identifier:n,description:e.description,concept:o,compose:o?void 0:e.compose}}function Ne(r,e,t,n){let o=[];e&&o.push(e),t&&o.push(...nn(t)),n&&o.push(...gt(n));let i={};for(let a of o)a.url!==r.url&&(i[a.url]=a);let s=new Set(n?.map(a=>a.identifier.url)),c=Object.values(i).filter(a=>Xe(r)||!N(a)?true:!s.has(a.url)).sort((a,l)=>a.url.localeCompare(l.url));return c.length>0?c:void 0}function on(r,e,t){let n=B(e),o;if(e.base&&e.type!=="Element"){let u=r.resolveFs(e.package_meta,r.ensureSpecializationCanonicalUrl(e.base));if(!u)throw new Error(`Base resource not found '${e.base}' for <${e.url}> from ${S(e.package_meta)}`);o=B(u);}let i=tn(r,e,[],e.elements,t),s=we(r,e,t),c=Ne(n,o,i,s),a={identifier:n,base:o,fields:i,nested:s,description:e.description,dependencies:c},l=St(r,e,t);return [a,...l]}async function ue(r,e,t){let n=on(r,e,t);if(rn(e,B(e))){let o=n[0];if(!o)throw new Error("Expected schema to be defined");o.metadata={isExtension:true};}return n}var Oe=r=>{let e={};for(let t of r){let n=t.identifier.package;e[n]||(e[n]=[]),e[n].push(t);}for(let[t,n]of Object.entries(e)){let o={};for(let s of n)o[JSON.stringify(s.identifier)]=s;let i=Object.values(o);i.sort((s,c)=>s.identifier.name.localeCompare(c.identifier.name)),e[t]=i;}return e},sn=(r,e,t)=>{if(r=structuredClone(r),Ze(r)||et(r)||Qe(r))return r;for(let n of e.ignoreFields??[]){if(r.fields&&!r.fields[n])throw new Error(`Field ${n} not found`);r.fields&&delete r.fields[n];}return r.dependencies=Ne(r.identifier,r.base,r.fields,r.nested),r},kt=(r,e,t)=>{let n=[];for(let[s,c]of Object.entries(e))for(let[a,l]of Object.entries(c)){let u=r.resolveByUrl(s,a);if(!u)throw new Error(`Schema not found for ${s} ${a}`);let h=sn(u,l);n.push(h);}let o=(s,c)=>{if(s.length===0)return Object.values(c);for(let l of s)c[JSON.stringify(l.identifier)]=l;let a=[];for(let l of s)if(_(l)){if(!l.dependencies)continue;if(l.dependencies.forEach(u=>{let h=r.resolve(u);if(!h)throw new Error(`Schema not found for ${u}`);let m=JSON.stringify(h.identifier);c[m]||a.push(h);}),l.nested)for(let u of l.nested){if(N(u.identifier))continue;let h=JSON.stringify(u.identifier);c[h]||a.push(u);}}return o(a,c)},i=o(n,{});return De(i,t)},an=r=>{let e=r.filter(i=>w(i)||O(i)),t=[];for(let i of e)i.base&&t.push({parent:i.base,child:i.identifier});let n=[...t],o=i=>{let s=t.filter(a=>a.parent.name===i.name).map(a=>a.child),c=[];for(let a of s)c.push(...o(a));return [...s,...c]};for(let i of t){let s=o(i.child);for(let c of s)t.some(a=>a.parent.name===i.parent.name&&a.child.name===c.name)||n.push({parent:i.parent,child:c});}return n},De=(r,e)=>{let t={},n=p=>{let f=p.identifier.url,y=p.identifier.package;if(t[f]||(t[f]={}),t[f][p.identifier.package]&&y!=="shared"){let k=JSON.stringify(p.identifier,void 0,2),v=JSON.stringify(t[f][y]?.identifier,void 0,2);if(k!==v)throw new Error(`Duplicate schema: ${k} and ${v}`);return}t[f][y]=p;};for(let p of r)n(p);let o=an(r),i=p=>t[p.url]?.[p.package],s=(p,f)=>t[f]?.[p],c=p=>o.filter(f=>f.parent.name===p.name).map(f=>f.child),a=p=>{let f=[],y=p;for(;y;){f.push(y);let k=y.base;if(k===void 0)break;let v=i(k);if(!v){e?.warn(`Failed to resolve base type: ${f.map(R=>`${R.identifier.url} (${R.identifier.kind})`).join(", ")}`);return}y=v;}return f},l=p=>{let f=a(p);if(f===void 0)throw new Error(`Failed to resolve base type: ${p.identifier.url} (${p.identifier.kind})`);return f},u=p=>{let f=l(p).find(y=>y.identifier.kind!=="profile");if(!f)throw new Error(`No non-constraint schema found in hierarchy for: ${p.identifier.name}`);return f};return {_schemaIndex:t,_relations:o,collectComplexTypes:()=>r.filter(Ye),collectResources:()=>r.filter(w),collectLogicalModels:()=>r.filter(O),collectProfiles:()=>r.filter(ie),resolve:i,resolveByUrl:s,resourceChildren:c,tryHierarchy:a,hierarchy:l,findLastSpecialization:u,findLastSpecializationByIdentifier:p=>{let f=i(p);return f?u(f).identifier:p},flatProfile:p=>{let f=l(p),y=f.filter(C=>C.identifier.kind==="profile"),k=f.find(C=>C.identifier.kind!=="profile");if(!k)throw new Error(`No non-constraint schema found in hierarchy for ${p.identifier.name}`);let v={};for(let C of y.slice().reverse()){let ee=C;if(ee.fields)for(let[te,He]of Object.entries(ee.fields))v[te]?v[te]={...v[te],...He}:v[te]={...He};}let R={};for(let C of y.flatMap(ee=>ee.dependencies??[]))R[C.url]=C;let Q=Object.values(R);return {...p,base:k.identifier,fields:v,dependencies:Q}},isWithMetaField:p=>{let f=a(p);return f?f.filter(_).some(y=>y.fields?.meta!==void 0):false},exportTree:async p=>{let f={};for(let[k,v]of Object.entries(Oe(r))){f[k]={"primitive-type":{},"complex-type":{},resource:{},"value-set":{},nested:{},binding:{},profile:{},logical:{}};for(let R of v)f[k][R.identifier.kind][R.identifier.url]={};}let y=p.endsWith(".yaml")?vt.stringify(f):JSON.stringify(f,void 0,2);await D.mkdir(P.dirname(p),{recursive:true}),await D.writeFile(p,y);}}};var X=class{manager;options;logger;constructor(e={}){this.options={verbose:false,...e},this.manager=e.manager||CanonicalManager({packages:[],workingDir:"tmp/fhir"}),this.logger=e.logger||E({verbose:this.options.verbose,prefix:"TypeSchema"});}async registerFromPackageMetas(e){let t=e.map(S);return this.logger?.step(`Loading FHIR packages: ${t.join(", ")}`),await this.manager.init(),J(this.manager,{focusedPackages:e})}generateFhirSchemas(e){this.logger?.progress(`Converting ${e.length} StructureDefinitions to FHIRSchemas`);let t=[],n=0,o=0;for(let i of e)try{let s=pt.translate(i);t.push(s),n++,this.logger?.debug(`Converted StructureDefinition: ${i.name||i.id} (${i.resourceType})`);}catch(s){o++,this.logger?.warn(`Failed to convert StructureDefinition ${i.name||i.id}: ${s instanceof Error?s.message:String(s)}`);}return this.logger?.success(`FHIR Schema conversion completed: ${n}/${e.length} successful, ${o} failed`),t}async generateValueSetSchemas(e,t){e.length>0&&this.logger?.debug(`${e.length} ValueSets available for enum extraction`);let n=await J(this.manager,{logger:this.logger}),o=[];if(e.length>0){this.logger?.progress(`Converting ${e.length} ValueSets to TypeSchema`);let i=0,s=0;for(let c of e)try{let a=await de(n,c,t);a&&(o.push(a),i++,this.logger?.debug(`Converted ValueSet: ${c.name||c.id}`));}catch(a){s++,this.logger?.warn(`Failed to convert ValueSet ${c.name||c.id}: ${a instanceof Error?a.message:String(a)}`);}this.logger?.success(`ValueSet conversion completed: ${i}/${e.length} successful, ${s} failed`);}return o}async generateFromPackage(e,t,n){let o={name:e,version:t||"latest"},i=await this.registerFromPackageMetas([o]),s=await this.generateValueSetSchemas(i.allVs(),n);return [...(await Promise.all(i.allFs().map(async l=>await ue(i,l,n)))).flat(),...s]}};var Y="Use CodeableReference which is not provided by FHIR R4.",ln="Use Availability which is not provided by FHIR R4.",Ct={"hl7.fhir.uv.extensions.r4#1.0.0":{"http://hl7.org/fhir/StructureDefinition/extended-contact-availability":ln,"http://hl7.org/fhir/StructureDefinition/immunization-procedure":Y,"http://hl7.org/fhir/StructureDefinition/specimen-additive":Y,"http://hl7.org/fhir/StructureDefinition/workflow-barrier":Y,"http://hl7.org/fhir/StructureDefinition/workflow-protectiveFactor":Y,"http://hl7.org/fhir/StructureDefinition/workflow-reason":Y},"hl7.fhir.r5.core#5.0.0":{"http://hl7.org/fhir/StructureDefinition/shareablecodesystem":"FIXME: CodeSystem.concept.concept defined by ElementReference. FHIR Schema generator output broken value in it, so we just skip it for now."}},Rt=async(r,e)=>{let t=[];for(let n of r.allFs()){let o=S(n.package_meta);if(Ct[o]?.[n.url]){e?.dry_warn(`Skip ${n.url} from ${o}. Reason: ${Ct[o]?.[n.url]}`);continue}t.push(...await ue(r,n,e));}for(let n of r.allVs())t.push(await de(r,n));return t};var pn={boolean:"boolean",instant:"string",time:"string",date:"string",dateTime:"string",decimal:"number",integer:"number",unsignedInt:"number",positiveInt:"number",integer64:"number",base64Binary:"string",uri:"string",url:"string",canonical:"string",oid:"string",uuid:"string",string:"string",code:"string",markdown:"string",id:"string",xhtml:"string"},xt=r=>{let e=pn[r];if(e===void 0)throw new Error(`Unknown primitive type ${r}`);return e},dn=r=>W(r),It=r=>r.kind==="profile"?`${T(r)}_profile`:L(r.name),un=r=>`${It(r)}.ts`,Me=(r,e=true)=>{if(!r)return;let t=re(r,e);if(t)return Le(t)},T=r=>{if(r.kind==="nested"){let e=r.url,t=Me(e,false);if(!t)return "";let[n,o]=t.split("#"),i=ne((o??"").split(".")).join("");return Le([n,i].join(""))}return Le(r.name)},wt=new Set(["class","function","return","if","for","while","const","let","var","import","export","interface"]),z=r=>wt.has(r)?`"${r}"`:r.includes(" ")||r.includes("-")?`"${r}"`:r,Le=r=>(wt.has(r)&&(r=`${r}_`),r.replace(/[- ]/g,"_")),V=(r,e)=>e.startsWith('"')?`${r}[${e}]`:`${r}.${e}`,Ft=r=>`(${r.map(e=>`"${e}"`).join(" | ")})`,ge=class extends A{tsImportType(e,...t){this.lineSM(`import type { ${t.join(", ")} } from "${e}"`);}generateFhirPackageIndexFile(e){this.cat("index.ts",()=>{let t=e.flatMap(n=>[{identifier:n.identifier,tsPackageName:It(n.identifier),resourceName:T(n.identifier),nestedTypes:w(n)&&n.nested||O(n)&&n.nested?n.nested.map(o=>T(o.identifier)):[],helpers:w(n)||O(n)?[`is${T(n.identifier)}`]:[]}]).sort((n,o)=>n.resourceName.localeCompare(o.resourceName));t=Array.from(new Map(t.map(n=>[n.resourceName.toLowerCase(),n])).values()).sort((n,o)=>n.resourceName.localeCompare(o.resourceName));for(let n of t)this.debugComment(n.identifier),this.lineSM(`export type { ${[n.resourceName,...n.nestedTypes].join(", ")} } from "./${n.tsPackageName}"`),n.helpers.length>0&&this.lineSM(`export { ${n.helpers.join(", ")} } from "./${n.tsPackageName}"`);});}generateDependenciesImports(e){if(e.dependencies){let t=[],n=[];for(let o of e.dependencies)["complex-type","resource","logical"].includes(o.kind)?t.push({tsPackage:`../${W(o.package)}/${L(o.name)}`,name:I(o.name),dep:o}):N(o)?t.push({tsPackage:`../${W(o.package)}/${L(Me(o.url)??"")}`,name:T(o),dep:o}):n.push(o);t.sort((o,i)=>o.name.localeCompare(i.name));for(let o of t)this.debugComment(o.dep),this.tsImportType(o.tsPackage,o.name);for(let o of n)this.debugComment("skip:",o);this.line();}}generateComplexTypeReexports(e){let t=e.dependencies?.filter(n=>["complex-type"].includes(n.kind)).map(n=>({tsPackage:`../${W(n.package)}/${L(n.name)}`,name:I(n.name)}));if(t&&t.length>0){for(let n of t)this.lineSM(`export type { ${n.name} } from "${n.tsPackage}"`);this.line();}}addFieldExtension(e,t){if(t.type.kind==="primitive-type"){let n=z(`_${e}`);this.lineSM(`${n}?: Element`);}}generateType(e,t){let n;t.identifier.name==="Reference"?n="Reference<T extends string = string>":(t.identifier.kind,n=T(t.identifier));let o;if(t.base&&(o=`extends ${Me(t.base.url)}`),this.debugComment(t.identifier),!t.fields&&!o&&!w(t)){this.lineSM(`export type ${n} = object`);return}this.curlyBlock(["export","interface",n,o],()=>{if(w(t)||O(t)){let s=[t.identifier];s.push(...e.resourceChildren(t.identifier));let c=this.opts.openResourceTypeSet&&s.length>1?" | string":"";this.lineSM(`resourceType: ${s.sort((a,l)=>a.name.localeCompare(l.name)).map(a=>`"${a.name}"`).join(" | ")}${c}`),this.line();}if(!t.fields)return;let i=Object.entries(t.fields).sort((s,c)=>s[0].localeCompare(c[0]));for(let[s,c]of i){if(G(c))continue;this.debugComment(s,":",c);let a=z(s),l;c.enum?l=Ft(c.enum):t.identifier.name==="Reference"&&a==="reference"?l="`${T}/${string}`":c.reference&&c.reference.length>0?l=`Reference<${c.reference.map(d=>`"${d.name}"`).join(" | ")}>`:Re(c.type)?l=xt(c.type.name):N(c.type)?l=T(c.type):l=c.type.name;let u=c.required?"":"?",h=c.array?"[]":"";this.lineSM(`${a}${u}: ${l}${h}`),["resource","complex-type"].includes(t.identifier.kind)&&this.addFieldExtension(s,c);}});}generateResourceTypePredicate(e){if(!w(e)&&!O(e))return;let t=T(e.identifier);this.curlyBlock(["export","const",`is${t}`,"=",`(resource: unknown): resource is ${t}`,"=>"],()=>{this.lineSM(`return resource !== null && typeof resource === "object" && (resource as {resourceType: string}).resourceType === "${e.identifier.name}"`);});}generateNestedTypes(e,t){if(t.nested)for(let n of t.nested)this.generateType(e,n),this.line();}generateProfileType(e,t){this.debugComment("flatProfile",t);let n=T(t.identifier);this.debugComment("identifier",t.identifier),this.debugComment("base",t.base),this.curlyBlock(["export","interface",n],()=>{this.lineSM(`__profileUrl: "${t.identifier.url}"`),this.line();for(let[o,i]of Object.entries(t.fields??{})){if(G(i))continue;this.debugComment(o,i);let s=z(o),c;if(i.enum)c=Ft(i.enum);else if(i.reference&&i.reference.length>0){let a=e.findLastSpecialization(t);if(!_(a))throw new Error(`Invalid specialization for ${t.identifier}`);let l=a.fields?.[o];if(l===void 0||G(l)||l.reference===void 0)throw new Error(`Invalid field declaration for ${o}`);let u=l.reference.map(m=>m.name),h=i.reference.map(m=>{let d=e.findLastSpecializationByIdentifier(m);return d.name!==m.name?`"${d.name}" /*${m.name}*/`:`'${m.name}'`}).join(" | ");u.length===1&&u[0]==="Resource"&&h!=='"Resource"'?c=`Reference<"Resource" /* ${h} */ >`:c=`Reference<${h}>`;}else if(N(i.type))c=T(i.type);else if(Re(i.type))c=xt(i.type.name);else {if(i.type===void 0)throw new Error(`Undefined type for '${o}' field at ${Ke(t)}`);c=i.type.name;}this.lineSM(`${s}${i.required?"":"?"}: ${c}${i.array?"[]":""}`);}}),this.line();}generateAttachProfile(e){let t=T(e.base),n=T(e.identifier),o=Object.entries(e.fields||{}).filter(([i,s])=>s&&q(s)&&s.type!==void 0).map(([i])=>z(i));this.curlyBlock([`export const attach_${n}_to_${t} =`,`(resource: ${t}, profile: ${n}): ${t}`,"=>"],()=>{this.curlyBlock(["return"],()=>{this.line("...resource,"),this.curlyBlock(["meta:"],()=>{this.line(`profile: ['${e.identifier.url}']`);},[","]),o.forEach(i=>{this.line(`${i}: ${V("profile",i)},`);});});}),this.line();}generateExtractProfile(e,t){let n=T(t.base),o=T(t.identifier),i=Object.entries(t.fields||{}).filter(([a,l])=>q(l)&&l.type!==void 0).map(([a])=>a),s=e.findLastSpecialization(t);if(!_(s))throw new Error(`Specialization not found for ${t.identifier.url}`);let c={};this.curlyBlock([`export const extract_${o}_from_${n} =`,`(resource: ${n}): ${o}`,"=>"],()=>{i.forEach(a=>{let l=z(a),u=t.fields?.[a],h=s.fields?.[a];if(!q(u)||!q(h))return;u.required&&!h.required&&this.curlyBlock([`if (${V("resource",l)} === undefined)`],()=>this.lineSM(`throw new Error("'${l}' is required for ${t.identifier.url}")`));let m=u?.reference?.map(g=>g.name),d=h?.reference?.map(g=>g.name);if(m&&d&&m.length!==d.length){let g=`reference_is_valid_${l}`;this.curlyBlock(["const",g,"=","(ref?: Reference)","=>"],()=>{this.line("return !ref"),this.indentBlock(()=>{d.forEach(f=>{this.line(`|| ref.reference?.startsWith('${f}/')`);}),this.line(";");});});let p=u?.required?"":`!${V("resource",l)} || `;u.array?p+=`${V("resource",l)}.every( (ref) => ${g}(ref) )`:p+=`!${g}(${V("resource",l)})`,this.curlyBlock(["if (",p,")"],()=>{this.lineSM(`throw new Error("'${a}' has different references in profile and specialization")`);}),this.line(),c[a]=true;}}),this.curlyBlock(["return"],()=>{this.line(`__profileUrl: '${t.identifier.url}',`),i.forEach(a=>{let l=z(a);c[a]?this.line(`${l}:`,`${V("resource",l)} as ${o}['${l}'],`):this.line(`${l}:`,`${V("resource",l)},`);});});});}generateResourceModule(e,t){this.cat(`${un(t.identifier)}`,()=>{if(this.generateDisclaimer(),["complex-type","resource","logical"].includes(t.identifier.kind))this.generateDependenciesImports(t),this.generateComplexTypeReexports(t),this.generateNestedTypes(e,t),this.comment("CanonicalURL:",t.identifier.url),this.generateType(e,t),this.generateResourceTypePredicate(t);else if(ie(t)){let n=e.flatProfile(t);this.generateDependenciesImports(n),this.comment("CanonicalURL:",t.identifier.url),this.generateProfileType(e,n),this.generateAttachProfile(n),this.generateExtractProfile(e,n);}else throw new Error(`Profile generation not implemented for kind: ${t.identifier.kind}`)});}async generate(e){let t=[...e.collectComplexTypes(),...e.collectResources(),...e.collectLogicalModels(),...this.opts.generateProfile?e.collectProfiles().filter(o=>e.isWithMetaField(o)):[]],n=Oe(t);this.cd("/",()=>{for(let[o,i]of Object.entries(n)){let s=dn(o);this.cd(s,()=>{for(let c of i)this.generateResourceModule(e,c);this.generateFhirPackageIndexFile(i);});}});}};var $t=r=>{let e=r.replace(/[^a-zA-Z0-9\-_.@#()]/g,"");return e.length===0?"unknown":e},gn=async(r,e)=>{e.info("Cleaning outputs...");try{e.info(`Clean ${r.outputDir}`),x.rmSync(r.outputDir,{recursive:!0,force:!0}),r.typeSchemaOutputDir&&(e.info(`Clean ${r.typeSchemaOutputDir}`),x.rmSync(r.typeSchemaOutputDir,{recursive:!0,force:!0})),r.exportTypeTree&&(e.info(`Clean ${r.exportTypeTree}`),x.rmSync(r.exportTypeTree,{recursive:!0,force:!0}));}catch(t){e.warn(`Error cleaning output directory: ${t instanceof Error?t.message:String(t)}`);}},mn=async(r,e,t)=>{await D.mkdir(e,{recursive:true}),t.info(`Writing TypeSchema files to ${e}/...`);let n={};for(let o of r){let i={name:o.identifier.package,version:o.identifier.version},s=$t(S(i)),c=$t(`${o.identifier.name}(${re(o.identifier.url)})`),a=JSON.stringify(o,null,2),l=P.join(e,s,c);n[l]||(n[l]=[]),n[l]?.some(u=>u===a)||n[l].push(a);}for(let[o,i]of Object.entries(n))await Promise.all(i.map(async(s,c)=>{let a;c===0?a=`${o}.typeschema.json`:a=`${o}-${c}.typeschema.json`,await D.mkdir(P.dirname(a),{recursive:true}),await D.writeFile(a,s);}));},hn=async(r,e,t)=>{t.info(`Writing TypeSchema files to: ${e}`),await D.mkdir(P.dirname(e),{recursive:true}),t.info(`Writing TypeSchemas to one file ${e}...`);for(let n of r){let o=JSON.stringify(n,null,2);await D.appendFile(e,`${o}
+`);}},yn=async(r,e,t)=>{if(e.typeSchemaOutputDir)try{P.extname(e.typeSchemaOutputDir)===".ndjson"?await hn(r,e.typeSchemaOutputDir,t):await mn(r,e.typeSchemaOutputDir,t),t.info("Writing TypeSchema - DONE");}catch(n){if(t.error("Failed to write TypeSchema output",n instanceof Error?n:new Error(String(n))),e.throwException)throw n}},Z=class{schemas=[];options;generators=new Map;logger;packages=[];progressCallback;typeSchemaConfig;constructor(e={}){this.options={outputDir:e.outputDir||"./generated",verbose:e.verbose??false,overwrite:e.overwrite??true,cache:e.cache??true,cleanOutput:e.cleanOutput??true,typeSchemaConfig:e.typeSchemaConfig,manager:e.manager||null,throwException:e.throwException||false,typeSchemaOutputDir:e.typeSchemaOutputDir,exportTypeTree:e.exportTypeTree,treeShake:e.treeShake},this.typeSchemaConfig=e.typeSchemaConfig,this.logger=e.logger||E({verbose:this.options.verbose,prefix:"API"});}fromPackage(e,t){let n=Te({name:e,version:t||"latest"});return this.packages.push(n),this}fromPackageRef(e){return this.packages.push(e),this}fromSchemas(e){return this.logger.debug(`Adding ${e.length} TypeSchemas to generation`),this.schemas=[...this.schemas,...e],this}typescript(e){let o={...{...{logger:this.logger,outputDir:P.join(this.options.outputDir,"/types"),tabSize:4,withDebugComment:false,commentLinePrefix:"//",generateProfile:true},openResourceTypeSet:false},...Object.fromEntries(Object.entries(e).filter(([s,c])=>c!==void 0))},i=new ge(o);return this.generators.set("typescript",i),this.logger.debug(`Configured TypeScript generator (${JSON.stringify(o,void 0,2)})`),this}csharp(e,t){let n=new oe({outputDir:P.join(this.options.outputDir,"/types"),staticSourceDir:t??void 0,targetNamespace:e,logger:new U({prefix:"C#",timestamp:true,verbose:true,suppressLoggingLevel:[]})});return this.generators.set("C#",n),this.logger.debug("Configured C# generator"),this}onProgress(e){return this.progressCallback=e,this}outputTo(e){this.logger.debug(`Setting output directory: ${e}`),this.options.outputDir=e;for(let t of this.generators.values())t.setOutputDir(e);return this}verbose(e=true){return this.options.verbose=e,this.logger?.configure({verbose:e}),this}throwException(e=true){return this.options.throwException=e,this}cleanOutput(e=true){return this.options.cleanOutput=e,this}writeTypeTree(e){return this.options.exportTypeTree=e,this}treeShake(e){return this.options.treeShake=e,this}writeTypeSchemas(e){return this.options.typeSchemaOutputDir=e,this}async generate(){let e=performance.now(),t={success:false,outputDir:this.options.outputDir,filesGenerated:[],errors:[],warnings:[],duration:0};this.logger.debug(`Starting generation with ${this.generators.size} generators`);try{this.options.cleanOutput&&gn(this.options,this.logger),this.logger.info("Initialize Canonical Manager");let n=CanonicalManager({packages:this.packages,workingDir:".codegen-cache/canonical-manager-cache"}),o=await n.init(),i=Object.values(o),s=await J(n,{logger:this.logger,focusedPackages:i}),c=await Rt(s,this.logger);await yn(c,this.options,this.logger);let a=De(c,this.logger);this.options.treeShake&&(a=kt(a,this.options.treeShake,this.logger)),this.options.exportTypeTree&&await a.exportTree(this.options.exportTypeTree),this.logger.debug(`Executing ${this.generators.size} generators`),await this.executeGenerators(t,a),this.logger.info("Generation completed successfully"),t.success=t.errors.length===0,this.logger.debug(`Generation completed: ${t.filesGenerated.length} files`);}catch(n){if(this.logger.error("Code generation failed",n instanceof Error?n:new Error(String(n))),t.errors.push(n instanceof Error?n.message:String(n)),this.options.throwException)throw n}return {...t,success:t.errors.length===0,duration:performance.now()-e}}reset(){return this.schemas=[],this.generators.clear(),this.progressCallback=void 0,this}getSchemas(){return [...this.schemas]}getGenerators(){return Array.from(this.generators.keys())}async executeGenerators(e,t){for(let[n,o]of this.generators.entries()){this.logger.info(`Generating ${n}...`);try{await o.generate(t);let i=o.writtenFiles();e.filesGenerated.push(...i.map(s=>s.absPath)),this.logger.info(`Generating ${n} finished successfully`);}catch(i){if(e.errors.push(`${n} generator failed: ${i instanceof Error?i.message:String(i)}`),this.options.throwException)throw i}}}};var je={outputDir:"./generated",verbose:false,overwrite:true,validate:true,cache:true,cleanOutput:true,typescript:{moduleFormat:"esm",generateIndex:true,includeDocuments:false,namingConvention:"PascalCase",strictMode:true,includeProfiles:true,includeExtensions:false,includeCodeSystems:false,includeOperations:false,generateValueSets:false,valueSetDirectory:"valuesets",valueSetMode:"required-only",valueSetStrengths:["required"],includeValueSetHelpers:false,fhirVersion:"R4",resourceTypes:[],maxDepth:10,profileOptions:{generateKind:"interface",includeConstraints:true,includeDocumentation:true,strictMode:false,subfolder:"profiles"},generateBuilders:false,builderOptions:{includeValidation:true,includeFactoryMethods:true,includeInterfaces:true,generateNestedBuilders:true,includeHelperMethods:true,supportPartialBuild:true,includeJSDoc:true,generateFactories:true,includeTypeGuards:true,handleChoiceTypes:true,generateArrayHelpers:true},validatorOptions:{includeCardinality:true,includeTypes:true,includeConstraints:true,includeInvariants:false,validateRequired:true,allowAdditional:false,strictValidation:false,collectMetrics:false,generateAssertions:true,generatePartialValidators:true,optimizePerformance:true,includeJSDoc:true,generateCompositeValidators:true},guardOptions:{includeRuntimeValidation:true,includeErrorMessages:true,treeShakeable:true,targetTSVersion:"5.0",strictGuards:false,includeNullChecks:true,verbose:false}},typeSchema:{enablePersistence:true,cacheDir:".typeschema-cache",maxAge:1440*60*1e3,validateCached:true,forceRegenerate:false,shareCache:true,cacheKeyPrefix:"",treeshake:[],singleFile:false,profiles:{autoDetect:true}},packages:[],files:[],$schema:""},he=["atomic-codegen.config.ts","atomic-codegen.config","atomic-codegen.config.json",".atomic-codegenrc","atomic-codegen.json",".atomic-codegen.json","codegen.config.json","codegen.json"],Be=class{validate(e){let t={valid:true,errors:[],warnings:[]};if(!e||typeof e!="object")return t.valid=false,t.errors.push({path:"root",message:"Configuration must be an object",value:e}),t;let n=e;n.outputDir!==void 0&&typeof n.outputDir!="string"&&t.errors.push({path:"outputDir",message:"outputDir must be a string",value:n.outputDir});let o=["verbose","overwrite","validate","cache"];for(let i of o)n[i]!==void 0&&typeof n[i]!="boolean"&&t.errors.push({path:i,message:`${i} must be a boolean`,value:n[i]});if(n.typescript!==void 0){let i=this.validateTypeScriptConfig(n.typescript);t.errors.push(...i);}if(n.typeSchema!==void 0){let i=this.validateTypeSchemaConfig(n.typeSchema);t.errors.push(...i);}return n.packages!==void 0&&(Array.isArray(n.packages)?n.packages.forEach((i,s)=>{typeof i!="string"&&t.errors.push({path:`packages[${s}]`,message:"package name must be a string",value:i});}):t.errors.push({path:"packages",message:"packages must be an array",value:n.packages})),n.files!==void 0&&(Array.isArray(n.files)?n.files.forEach((i,s)=>{typeof i!="string"&&t.errors.push({path:`files[${s}]`,message:"file path must be a string",value:i});}):t.errors.push({path:"files",message:"files must be an array",value:n.files})),t.valid=t.errors.length===0,t.valid&&(t.config=n),t}validateTypeScriptConfig(e){let t=[];if(typeof e!="object"||e===null)return t.push({path:"typescript",message:"typescript config must be an object",value:e}),t;let n=e;n.moduleFormat!==void 0&&(["esm","cjs"].includes(n.moduleFormat)||t.push({path:"typescript.moduleFormat",message:'moduleFormat must be "esm" or "cjs"',value:n.moduleFormat})),n.namingConvention!==void 0&&(["PascalCase","camelCase"].includes(n.namingConvention)||t.push({path:"typescript.namingConvention",message:'namingConvention must be "PascalCase" or "camelCase"',value:n.namingConvention}));let o=["generateIndex","includeDocuments","strictMode","includeProfiles","includeExtensions","includeCodeSystems","includeOperations","generateValueSets","includeValueSetHelpers"];for(let i of o)n[i]!==void 0&&typeof n[i]!="boolean"&&t.push({path:`typescript.${i}`,message:`${i} must be a boolean`,value:n[i]});if(n.validatorOptions!==void 0){let i=this.validateValidatorOptions(n.validatorOptions);t.push(...i);}if(n.guardOptions!==void 0){let i=this.validateGuardOptions(n.guardOptions);t.push(...i);}if(n.profileOptions!==void 0){let i=this.validateProfileOptions(n.profileOptions);t.push(...i);}return t}validateValidatorOptions(e){let t=[];if(typeof e!="object"||e===null)return t.push({path:"typescript.validatorOptions",message:"validatorOptions must be an object",value:e}),t;let n=e,o=["includeCardinality","includeTypes","includeConstraints","includeInvariants","validateRequired","allowAdditional","strictValidation","collectMetrics","generateAssertions","generatePartialValidators","optimizePerformance","includeJSDoc","generateCompositeValidators"];for(let i of o)n[i]!==void 0&&typeof n[i]!="boolean"&&t.push({path:`typescript.validatorOptions.${i}`,message:`${i} must be a boolean`,value:n[i]});return t}validateGuardOptions(e){let t=[];if(typeof e!="object"||e===null)return t.push({path:"typescript.guardOptions",message:"guardOptions must be an object",value:e}),t;let n=e;n.targetTSVersion!==void 0&&(["3.8","4.0","4.5","5.0"].includes(n.targetTSVersion)||t.push({path:"typescript.guardOptions.targetTSVersion",message:'targetTSVersion must be one of: "3.8", "4.0", "4.5", "5.0"',value:n.targetTSVersion}));let o=["includeRuntimeValidation","includeErrorMessages","treeShakeable","strictGuards","includeNullChecks","verbose"];for(let i of o)n[i]!==void 0&&typeof n[i]!="boolean"&&t.push({path:`typescript.guardOptions.${i}`,message:`${i} must be a boolean`,value:n[i]});return t}validateProfileOptions(e){let t=[];if(typeof e!="object"||e===null)return t.push({path:"typescript.profileOptions",message:"profileOptions must be an object",value:e}),t;let n=e;n.generateKind!==void 0&&(["interface","type","both"].includes(n.generateKind)||t.push({path:"typescript.profileOptions.generateKind",message:'generateKind must be "interface", "type", or "both"',value:n.generateKind})),n.subfolder!==void 0&&typeof n.subfolder!="string"&&t.push({path:"typescript.profileOptions.subfolder",message:"subfolder must be a string",value:n.subfolder});let o=["includeConstraints","includeDocumentation","strictMode"];for(let i of o)n[i]!==void 0&&typeof n[i]!="boolean"&&t.push({path:`typescript.profileOptions.${i}`,message:`${i} must be a boolean`,value:n[i]});return t}validateTypeSchemaConfig(e){let t=[];if(typeof e!="object"||e===null)return t.push({path:"typeSchema",message:"typeSchema config must be an object",value:e}),t;let n=e,o=["enablePersistence","validateCached","forceRegenerate","shareCache"];for(let s of o)n[s]!==void 0&&typeof n[s]!="boolean"&&t.push({path:`typeSchema.${s}`,message:`${s} must be a boolean`,value:n[s]});let i=["cacheDir","cacheKeyPrefix"];for(let s of i)n[s]!==void 0&&typeof n[s]!="string"&&t.push({path:`typeSchema.${s}`,message:`${s} must be a string`,value:n[s]});if(n.maxAge!==void 0&&(typeof n.maxAge!="number"||n.maxAge<=0)&&t.push({path:"typeSchema.maxAge",message:"maxAge must be a positive number",value:n.maxAge}),n.profiles!==void 0)if(typeof n.profiles!="object"||n.profiles===null)t.push({path:"typeSchema.profiles",message:"profiles must be an object",value:n.profiles});else {let s=n.profiles;s.autoDetect!==void 0&&typeof s.autoDetect!="boolean"&&t.push({path:"typeSchema.profiles.autoDetect",message:"autoDetect must be a boolean",value:s.autoDetect});}return t}},Ve=class{validator=new Be;async autoload(e=process.cwd()){let t=await this.findConfigFile(e);return t?this.loadFromFile(t):{...je}}async loadFromFile(e){try{let t;if(e.endsWith(".ts")||e.endsWith("")){let i=await import(resolve(e));t=i.default||i;}else {let o=await readFile(e,"utf-8");t=JSON.parse(o);}let n=this.validator.validate(t);if(!n.valid){let o=n.errors.map(i=>`${i.path}: ${i.message}`).join(`
 `);throw new Error(`Configuration validation failed:
-${o}`)}if(!r.config)throw new Error("Invalid configuration");return this.mergeWithDefaults(r.config)}catch(t){throw t instanceof Error?new Error(`Failed to load config from ${e}: ${t.message}`):t}}async findConfigFile(e){for(let t of me){let r=resolve(e,t);if(existsSync(r))return r}return null}mergeWithDefaults(e){return {...je,...e,typescript:{...je.typescript,...e.typescript}}}},Tn=new Be;async function he(n){return Tn.autoload(n)}var Nt={command:"generate",describe:"Generate code based on configuration file settings",builder:n=>n.option("verbose",{alias:"v",type:"boolean",default:false,description:"Enable verbose output"}).example("$0 generate","Generate code using settings from config file").example("$0 generate --verbose","Generate with verbose output"),handler:async n=>{if(n._.length>1){let s=n._.slice(1).join(" ");I(`Invalid syntax: 'atomic-codegen generate ${s}'
+${o}`)}if(!n.config)throw new Error("Invalid configuration");return this.mergeWithDefaults(n.config)}catch(t){throw t instanceof Error?new Error(`Failed to load config from ${e}: ${t.message}`):t}}async findConfigFile(e){for(let t of he){let n=resolve(e,t);if(existsSync(n))return n}return null}mergeWithDefaults(e){return {...je,...e,typescript:{...je.typescript,...e.typescript}}}},vn=new Ve;async function ye(r){return vn.autoload(r)}var Et={command:"generate",describe:"Generate code based on configuration file settings",builder:r=>r.option("verbose",{alias:"v",type:"boolean",default:false,description:"Enable verbose output"}).example("$0 generate","Generate code using settings from config file").example("$0 generate --verbose","Generate with verbose output"),handler:async r=>{if(r._.length>1){let s=r._.slice(1).join(" ");F(`Invalid syntax: 'atomic-codegen generate ${s}'
 
 The CLI has been simplified and no longer uses subcommands.
 
@@ -14,8 +14,8 @@ The CLI has been simplified and no longer uses subcommands.
 \u274C Old: atomic-codegen generate typescript
 
 All generation settings are now configured in your config file.
-Create an atomic-codegen.config.ts file to get started.`),process.exit(1);}let e=process.cwd(),t=await Cn(e);if(!t){let s=me.map(c=>`  - ${c}`).join(`
-`);I(`No configuration file found. Please create one of the following files in your project root:
+Create an atomic-codegen.config.ts file to get started.`),process.exit(1);}let e=process.cwd(),t=await Cn(e);if(!t){let s=he.map(c=>`  - ${c}`).join(`
+`);F(`No configuration file found. Please create one of the following files in your project root:
 ${s}
 
 Example atomic-codegen.config.ts:
@@ -27,13 +27,13 @@ export default defineConfig({
   typescript: {
     generateIndex: true
   }
-});`),process.exit(1);}let r=await he(e),o=n.verbose??r.verbose??false,i=E({verbose:o,prefix:"Generate"});try{_e("Starting generation from config"),o&&(i.info(`Config file: ${t}`),i.info(`Output directory: ${r.outputDir||"./generated"}`),i.info(`Packages: ${r.packages?.length||0}`),i.info(`Files: ${r.files?.length||0}`),i.info(`TypeScript generation: ${r.typescript?"enabled":"disabled"}`));let s=new Y({outputDir:r.outputDir||"./generated",verbose:o,overwrite:r.overwrite??!0,cache:r.cache??!0,typeSchemaConfig:r.typeSchema,logger:i});if(r.packages&&r.packages.length>0){i.info(`Loading packages from config: ${r.packages.join(", ")}`);for(let a of r.packages){let[l,u]=a.includes("@")?a.split("@"):[a,void 0];s.fromPackage(l,u);}}else throw r.files&&r.files.length>0?(i.info(`Loading files from config: ${r.files.join(", ")}`),new Error("Not Implemented")):new Error("No data source specified in config. Please configure 'packages' or 'files' in your config file.");if(r.typescript)throw new Error("Not Implemented");if(!r.typescript)throw new Error("No generators configured. Please enable 'typescript' in your config file.");o&&s.onProgress((a,l,u,h)=>{let m=Math.round(l/u*100);i.progress(`[${a}] ${m}% - ${h||"Processing..."}`);}),i.step("Executing generation...");let c=await s.generate();if(c.success){if(ye(`Generated ${c.filesGenerated.length} files in ${c.duration.toFixed(2)}ms`),i.dim(`Output directory: ${c.outputDir}`),c.warnings.length>0)for(let a of c.warnings)Ae(a);}else {I(`Generation failed with ${c.errors.length} errors`);for(let a of c.errors)i.dim(`  ${a}`);process.exit(1);}}catch(s){I("Generation failed with unexpected error",s instanceof Error?s:new Error(String(s))),process.exit(1);}}};async function Cn(n){for(let e of me){let t=resolve(n,e);if(existsSync(t))return t}return null}var Ot={command:"generate <packages..>",describe:"Generate TypeSchema files from FHIR packages",builder:{packages:{type:"string",array:true,demandOption:true,describe:"FHIR packages to process (e.g., hl7.fhir.r4.core@4.0.1)"},output:{alias:"o",type:"string",describe:"Output file or directory",default:"./schemas.ndjson"},format:{alias:"f",type:"string",choices:["ndjson","json"],default:"ndjson",describe:"Output format for TypeSchema files"},treeshake:{alias:"t",type:"string",array:true,describe:"Only generate TypeSchemas for specific ResourceTypes (treeshaking)"},singleFile:{alias:"s",type:"boolean",default:false,describe:"Generate single TypeSchema file instead of multiple files (NDJSON format)"},verbose:{alias:"v",type:"boolean",default:false,describe:"Enable verbose output"}},handler:async n=>{let e=E({verbose:n.verbose,prefix:"TypeSchema"});try{let t=await he(process.cwd());e.step("Generating TypeSchema from FHIR packages"),e.info(`Packages: ${n.packages.join(", ")}`),e.info(`Output: ${n.output}`);let r=n.singleFile!==void 0?n.singleFile:t.typeSchema?.singleFile??!1,o=r?"ndjson":n.format;e.debug(`Format: ${o}${r&&n.format==="json"?" (forced from json due to singleFile)":""}`);let i=n.treeshake&&n.treeshake.length>0?n.treeshake:t.typeSchema?.treeshake;i&&i.length>0&&e.info(`Treeshaking enabled for ResourceTypes: ${i.join(", ")}`),r&&e.info("Single file output enabled (NDJSON format)");let s=Date.now(),c=new K({verbose:n.verbose,treeshake:i}),a=[];for(let m of n.packages){let[d,g]=m.includes("@")?m.split("@"):[m,void 0];e.progress(`Processing package: ${d}${g?`@${g}`:""}`);let p=await c.generateFromPackage(d,g,e);a.push(...p);}if(a.length===0)throw new Error("No schemas were generated from the specified packages");let l=n.output;if(!l)throw new Error("Output format not specified");await mkdir(dirname(l),{recursive:!0});let u;o==="json"?u=JSON.stringify(a,null,2):u=a.map(m=>JSON.stringify(m)).join(`
-`),await writeFile(l,u,"utf-8");let h=Date.now()-s;if(We(`Generated ${a.length} TypeSchema definitions`,h,{schemas:a.length}),e.dim(`Output: ${l}`),n.verbose){e.debug("Generated schemas:");let m=a.map(d=>`${d.identifier?.name||"Unknown"} (${d.identifier?.kind||"unknown"})`);U(m);}}catch(t){e.error("Failed to generate TypeSchema",t instanceof Error?t:new Error(String(t))),process.exit(1);}}};var Dt={command:"typeschema [subcommand]",describe:"TypeSchema operations - generate, validate and merge schemas",builder:n=>n.command(Ot).help().example("$0 typeschema generate hl7.fhir.r4.core@4.0.1","Generate TypeSchema from FHIR R4 core package"),handler:n=>{if(!n.subcommand&&n._.length===1){Se("Available typeschema subcommands:"),U(["generate    Generate TypeSchema files from FHIR packages"]),console.log(`
+});`),process.exit(1);}let n=await ye(e),o=r.verbose??n.verbose??false,i=E({verbose:o,prefix:"Generate"});try{_e("Starting generation from config"),o&&(i.info(`Config file: ${t}`),i.info(`Output directory: ${n.outputDir||"./generated"}`),i.info(`Packages: ${n.packages?.length||0}`),i.info(`Files: ${n.files?.length||0}`),i.info(`TypeScript generation: ${n.typescript?"enabled":"disabled"}`));let s=new Z({outputDir:n.outputDir||"./generated",verbose:o,overwrite:n.overwrite??!0,cache:n.cache??!0,typeSchemaConfig:n.typeSchema,logger:i});if(n.packages&&n.packages.length>0){i.info(`Loading packages from config: ${n.packages.join(", ")}`);for(let a of n.packages){let[l,u]=a.includes("@")?a.split("@"):[a,void 0];s.fromPackage(l,u);}}else throw n.files&&n.files.length>0?(i.info(`Loading files from config: ${n.files.join(", ")}`),new Error("Not Implemented")):new Error("No data source specified in config. Please configure 'packages' or 'files' in your config file.");if(n.typescript)throw new Error("Not Implemented");if(!n.typescript)throw new Error("No generators configured. Please enable 'typescript' in your config file.");o&&s.onProgress((a,l,u,h)=>{let m=Math.round(l/u*100);i.progress(`[${a}] ${m}% - ${h||"Processing..."}`);}),i.step("Executing generation...");let c=await s.generate();if(c.success){if(Se(`Generated ${c.filesGenerated.length} files in ${c.duration.toFixed(2)}ms`),i.dim(`Output directory: ${c.outputDir}`),c.warnings.length>0)for(let a of c.warnings)Ae(a);}else {F(`Generation failed with ${c.errors.length} errors`);for(let a of c.errors)i.dim(`  ${a}`);process.exit(1);}}catch(s){F("Generation failed with unexpected error",s instanceof Error?s:new Error(String(s))),process.exit(1);}}};async function Cn(r){for(let e of he){let t=resolve(r,e);if(existsSync(t))return t}return null}var Nt={command:"generate <packages..>",describe:"Generate TypeSchema files from FHIR packages",builder:{packages:{type:"string",array:true,demandOption:true,describe:"FHIR packages to process (e.g., hl7.fhir.r4.core@4.0.1)"},output:{alias:"o",type:"string",describe:"Output file or directory",default:"./schemas.ndjson"},format:{alias:"f",type:"string",choices:["ndjson","json"],default:"ndjson",describe:"Output format for TypeSchema files"},treeshake:{alias:"t",type:"string",array:true,describe:"Only generate TypeSchemas for specific ResourceTypes (treeshaking)"},singleFile:{alias:"s",type:"boolean",default:false,describe:"Generate single TypeSchema file instead of multiple files (NDJSON format)"},verbose:{alias:"v",type:"boolean",default:false,describe:"Enable verbose output"}},handler:async r=>{let e=E({verbose:r.verbose,prefix:"TypeSchema"});try{let t=await ye(process.cwd());e.step("Generating TypeSchema from FHIR packages"),e.info(`Packages: ${r.packages.join(", ")}`),e.info(`Output: ${r.output}`);let n=r.singleFile!==void 0?r.singleFile:t.typeSchema?.singleFile??!1,o=n?"ndjson":r.format;e.debug(`Format: ${o}${n&&r.format==="json"?" (forced from json due to singleFile)":""}`);let i=r.treeshake&&r.treeshake.length>0?r.treeshake:t.typeSchema?.treeshake;i&&i.length>0&&e.info(`Treeshaking enabled for ResourceTypes: ${i.join(", ")}`),n&&e.info("Single file output enabled (NDJSON format)");let s=Date.now(),c=new X({verbose:r.verbose,treeshake:i}),a=[];for(let m of r.packages){let[d,g]=m.includes("@")?m.split("@"):[m,void 0];e.progress(`Processing package: ${d}${g?`@${g}`:""}`);let p=await c.generateFromPackage(d,g,e);a.push(...p);}if(a.length===0)throw new Error("No schemas were generated from the specified packages");let l=r.output;if(!l)throw new Error("Output format not specified");await mkdir(dirname(l),{recursive:!0});let u;o==="json"?u=JSON.stringify(a,null,2):u=a.map(m=>JSON.stringify(m)).join(`
+`),await writeFile(l,u,"utf-8");let h=Date.now()-s;if(We(`Generated ${a.length} TypeSchema definitions`,h,{schemas:a.length}),e.dim(`Output: ${l}`),r.verbose){e.debug("Generated schemas:");let m=a.map(d=>`${d.identifier?.name||"Unknown"} (${d.identifier?.kind||"unknown"})`);H(m);}}catch(t){e.error("Failed to generate TypeSchema",t instanceof Error?t:new Error(String(t))),process.exit(1);}}};var Ot={command:"typeschema [subcommand]",describe:"TypeSchema operations - generate, validate and merge schemas",builder:r=>r.command(Nt).help().example("$0 typeschema generate hl7.fhir.r4.core@4.0.1","Generate TypeSchema from FHIR R4 core package"),handler:r=>{if(!r.subcommand&&r._.length===1){be("Available typeschema subcommands:"),H(["generate    Generate TypeSchema files from FHIR packages"]),console.log(`
 Use 'atomic-codegen typeschema <subcommand> --help' for more information about a subcommand.`),console.log(`
-Examples:`),U(["atomic-codegen typeschema generate hl7.fhir.r4.core@4.0.1 -o schemas.ndjson","atomic-codegen typeschema validate schemas.ndjson","atomic-codegen typeschema merge schema1.ndjson schema2.ndjson -o merged.ndjson"]);return}n.subcommand&&!["generate","validate","merge"].includes(n.subcommand)&&(I(`Unknown typeschema subcommand: ${n.subcommand}
-`),Se("Available typeschema subcommands:"),U(["generate    Generate TypeSchema files from FHIR packages","validate    Validate TypeSchema files for correctness and consistency","merge       Merge multiple TypeSchema files into a single file"]),console.log(`
-Use 'atomic-codegen typeschema <subcommand> --help' for more information about a subcommand.`),process.exit(1));}};async function Pn(n){Ge({verbose:n.verbose||n.debug,timestamp:n.debug});}function En(){return wn(hideBin(process.argv)).scriptName("atomic-codegen").usage("$0 <command> [options]").middleware(Pn).command(Dt).command(Nt).option("verbose",{alias:"v",type:"boolean",description:"Enable verbose output",default:false,global:true}).option("debug",{alias:"d",type:"boolean",description:"Enable debug output with detailed logging",default:false,global:true}).option("config",{alias:"c",type:"string",description:"Path to configuration file (.atomic-codegen.json by default)",global:true}).demandCommand(0).middleware(n=>{n._.length===0&&(ze("Welcome to Atomic Codegen!"),console.log("Available commands:"),console.log("  typeschema   Generate, validate and merge TypeSchema files"),console.log("  generate     Generate code based on configuration file"),console.log(`
+Examples:`),H(["atomic-codegen typeschema generate hl7.fhir.r4.core@4.0.1 -o schemas.ndjson","atomic-codegen typeschema validate schemas.ndjson","atomic-codegen typeschema merge schema1.ndjson schema2.ndjson -o merged.ndjson"]);return}r.subcommand&&!["generate","validate","merge"].includes(r.subcommand)&&(F(`Unknown typeschema subcommand: ${r.subcommand}
+`),be("Available typeschema subcommands:"),H(["generate    Generate TypeSchema files from FHIR packages","validate    Validate TypeSchema files for correctness and consistency","merge       Merge multiple TypeSchema files into a single file"]),console.log(`
+Use 'atomic-codegen typeschema <subcommand> --help' for more information about a subcommand.`),process.exit(1));}};async function $n(r){Ge({verbose:r.verbose||r.debug,timestamp:r.debug});}function Pn(){return In(hideBin(process.argv)).scriptName("atomic-codegen").usage("$0 <command> [options]").middleware($n).command(Ot).command(Et).option("verbose",{alias:"v",type:"boolean",description:"Enable verbose output",default:false,global:true}).option("debug",{alias:"d",type:"boolean",description:"Enable debug output with detailed logging",default:false,global:true}).option("config",{alias:"c",type:"string",description:"Path to configuration file (.atomic-codegen.json by default)",global:true}).demandCommand(0).middleware(r=>{r._.length===0&&(ze("Welcome to Atomic Codegen!"),console.log("Available commands:"),console.log("  typeschema   Generate, validate and merge TypeSchema files"),console.log("  generate     Generate code based on configuration file"),console.log(`
 Use 'atomic-codegen <command> --help' for more information about a command.`),console.log(`
 Quick examples:`),console.log("  atomic-codegen typeschema generate hl7.fhir.r4.core@4.0.1 -o schemas.ndjson"),console.log("  atomic-codegen generate  # Uses atomic-codegen.config.ts"),console.log(`
-Use 'atomic-codegen --help' to see all options.`),process.exit(0));}).help().version("0.1.0").example("$0 generate","Generate code using atomic-codegen.config.ts").example("$0 generate --verbose","Generate with detailed progress output").example("$0 --config custom-config.ts generate","Use custom configuration file").example("$0 typeschema generate hl7.fhir.r4.core@4.0.1 -o schemas.ndjson","Generate TypeSchemas from FHIR package").fail((n,e,t)=>{e?I(e.message,e):I(n),I(`
-Use --help for usage information`),process.exit(1);}).wrap(Math.min(120,process.stdout.columns||80))}async function Ue(){await En().parseAsync();}import.meta.main&&Ue().catch(n=>{n("Unexpected error:",n),process.exit(1);});Ue().catch(n=>{console.error("CLI Error:",n instanceof Error?n.message:n),process.exit(1);});
+Use 'atomic-codegen --help' to see all options.`),process.exit(0));}).help().version("0.1.0").example("$0 generate","Generate code using atomic-codegen.config.ts").example("$0 generate --verbose","Generate with detailed progress output").example("$0 --config custom-config.ts generate","Use custom configuration file").example("$0 typeschema generate hl7.fhir.r4.core@4.0.1 -o schemas.ndjson","Generate TypeSchemas from FHIR package").fail((r,e,t)=>{e?F(e.message,e):F(r),F(`
+Use --help for usage information`),process.exit(1);}).wrap(Math.min(120,process.stdout.columns||80))}async function Ue(){await Pn().parseAsync();}import.meta.main&&Ue().catch(r=>{r("Unexpected error:",r),process.exit(1);});Ue().catch(r=>{console.error("CLI Error:",r instanceof Error?r.message:r),process.exit(1);});

package/dist/index.d.ts

@@ -478,6 +478,7 @@ declare function defineConfig(config: Config): Config;
 
 type FileSystemWriterOptions = {
     outputDir: string;
+    inMemoryOnly?: boolean;
     logger?: CodegenLogger;
 };
 type WriterOptions = FileSystemWriterOptions & {
@@ -570,15 +571,6 @@ declare class APIBuilder {
     treeShake(tree: TreeShake): this;
     writeTypeSchemas(target: string): this;
     generate(): Promise<GenerationResult>;
-    /**
-     * Generate and return the results without writing to files
-     */
-    build(): Promise<{
-        typescript?: {
-            content: string;
-            filename: string;
-        }[];
-    }>;
     /**
      * Clear all configuration and start fresh
      */