@atomic-ehr/codegen 0.0.2-canary.20251118084806.b0f2c4d → 0.0.2-canary.20251119112501.fdc096d

package/dist/cli/index.js

@@ -1,5 +1,5 @@
 #!/usr/bin/env node
-import Ei from'yargs';import {hideBin}from'yargs/helpers';import'perf_hooks';import'ora';import b from'picocolors';import*as F from'fs';import F__default,{existsSync,mkdirSync}from'fs';import*as R from'path';import R__default,{dirname,resolve,join,relative}from'path';import*as L from'fs/promises';import {mkdir,writeFile,readFile,readdir,stat,unlink,access,rm}from'fs/promises';import {CanonicalManager}from'@atomic-ehr/fhir-canonical-manager';import*as jt from'@atomic-ehr/fhirschema';import {isStructureDefinition}from'@atomic-ehr/fhirschema';import*as tr from'yaml';var Ae=Object.defineProperty;var xr=Object.getOwnPropertyDescriptor;var wr=Object.getOwnPropertyNames;var kr=Object.prototype.hasOwnProperty;var Cr=(n=>typeof require<"u"?require:typeof Proxy<"u"?new Proxy(n,{get:(e,t)=>(typeof require<"u"?require:e)[t]}):n)(function(n){if(typeof require<"u")return require.apply(this,arguments);throw Error('Dynamic require of "'+n+'" is not supported')});var le=(n,e)=>()=>(n&&(e=n(n=0)),e);var je=(n,e)=>{for(var t in e)Ae(n,t,{get:e[t],enumerable:true});},Fr=(n,e,t,r)=>{if(e&&typeof e=="object"||typeof e=="function")for(let i of wr(e))!kr.call(n,i)&&i!==t&&Ae(n,i,{get:()=>e[i],enumerable:!(r=xr(e,i))||r.enumerable});return n};var Ve=n=>Fr(Ae({},"__esModule",{value:true}),n);var $,Ce,ie,B,Fe,$e,ne=le(()=>{$=class extends Error{constructor(t,r,i){super(t);this.phase=r;this.context=i;this.name=this.constructor.name,this.timestamp=new Date,this.errorId=this.generateErrorId(),Error.captureStackTrace&&Error.captureStackTrace(this,this.constructor);}timestamp;errorId;generateErrorId(){return `${this.constructor.name}-${Date.now()}-${Math.random().toString(36).substr(2,9)}`}getDetailedMessage(){let t=[`\u274C ${this.constructor.name}: ${this.message}`,`   Error ID: ${this.errorId}`,`   Phase: ${this.phase}`,`   Time: ${this.timestamp.toISOString()}`];return this.context&&Object.keys(this.context).length>0&&(t.push(""),t.push("\u{1F4CD} Context:"),Object.entries(this.context).forEach(([r,i])=>{t.push(`   ${r}: ${this.formatContextValue(i)}`);})),t.join(`
+import Ii from'yargs';import {hideBin}from'yargs/helpers';import'perf_hooks';import'ora';import b from'picocolors';import*as F from'fs';import F__default,{existsSync,mkdirSync}from'fs';import*as R from'path';import R__default,{dirname,resolve,join,relative}from'path';import*as L from'fs/promises';import {mkdir,writeFile,readFile,readdir,stat,unlink,access,rm}from'fs/promises';import {CanonicalManager}from'@atomic-ehr/fhir-canonical-manager';import*as jt from'@atomic-ehr/fhirschema';import {isStructureDefinition}from'@atomic-ehr/fhirschema';import*as tr from'yaml';var Ae=Object.defineProperty;var xr=Object.getOwnPropertyDescriptor;var wr=Object.getOwnPropertyNames;var kr=Object.prototype.hasOwnProperty;var Cr=(n=>typeof require<"u"?require:typeof Proxy<"u"?new Proxy(n,{get:(e,t)=>(typeof require<"u"?require:e)[t]}):n)(function(n){if(typeof require<"u")return require.apply(this,arguments);throw Error('Dynamic require of "'+n+'" is not supported')});var le=(n,e)=>()=>(n&&(e=n(n=0)),e);var je=(n,e)=>{for(var t in e)Ae(n,t,{get:e[t],enumerable:true});},Fr=(n,e,t,r)=>{if(e&&typeof e=="object"||typeof e=="function")for(let i of wr(e))!kr.call(n,i)&&i!==t&&Ae(n,i,{get:()=>e[i],enumerable:!(r=xr(e,i))||r.enumerable});return n};var Ve=n=>Fr(Ae({},"__esModule",{value:true}),n);var $,Ce,ie,B,Fe,$e,ne=le(()=>{$=class extends Error{constructor(t,r,i){super(t);this.phase=r;this.context=i;this.name=this.constructor.name,this.timestamp=new Date,this.errorId=this.generateErrorId(),Error.captureStackTrace&&Error.captureStackTrace(this,this.constructor);}timestamp;errorId;generateErrorId(){return `${this.constructor.name}-${Date.now()}-${Math.random().toString(36).substr(2,9)}`}getDetailedMessage(){let t=[`\u274C ${this.constructor.name}: ${this.message}`,`   Error ID: ${this.errorId}`,`   Phase: ${this.phase}`,`   Time: ${this.timestamp.toISOString()}`];return this.context&&Object.keys(this.context).length>0&&(t.push(""),t.push("\u{1F4CD} Context:"),Object.entries(this.context).forEach(([r,i])=>{t.push(`   ${r}: ${this.formatContextValue(i)}`);})),t.join(`
 `)}formatContextValue(t){if(t==null)return String(t);if(typeof t=="string")return `"${t}"`;if(typeof t=="object")try{return JSON.stringify(t,null,2)}catch{return "[Object]"}return String(t)}getSeverity(){return "error"}isRecoverable(){return  false}getDocumentationLinks(){return ["https://github.com/atomic-ehr/codegen/docs/troubleshooting.md",`https://github.com/atomic-ehr/codegen/docs/errors/${this.constructor.name}.md`]}},Ce=class extends ${constructor(t,r,i,s){super(t,"validation",{schemaName:r.identifier?.name||"unknown",schemaKind:r.identifier?.kind||"unknown",schemaPackage:r.identifier?.package||"unknown",validationErrors:i,userContext:s});this.schema=r;this.validationErrors=i;this.userContext=s;}getSuggestions(){let t=[];t.push("Verify the schema follows the TypeSchema specification"),t.push("Check that all required fields are present and properly typed");for(let r of this.validationErrors)r.includes("identifier.name")&&(t.push("\u2728 Add a valid identifier.name field to your schema"),t.push('\u{1F4A1} Example: identifier: { name: "Patient", kind: "resource" }')),r.includes("identifier.kind")&&(t.push('\u{1F3AF} Set identifier.kind to: "resource", "complex-type", "profile", or "primitive-type"'),t.push("\u{1F4DA} Check FHIR specification for the correct kind value")),r.includes("circular")&&(t.push("\u{1F504} Remove circular references between schemas"),t.push("\u{1F4A1} Use forward declarations for recursive types"),t.push("\u{1F50D} Look for schemas that reference each other in a loop")),r.includes("fields")&&(t.push("\u{1F4DD} Check that all fields have proper type definitions"),t.push("\u{1F527} Ensure field types reference valid TypeSchema identifiers"));return this.userContext?.isBeginnerMode&&(t.push(""),t.push("\u{1F393} Beginner Tips:"),t.push("\u{1F4D6} Start with the Quick Start guide: docs/getting-started/quick-start.md"),t.push("\u{1F50D} Use --verbose flag for detailed error information"),t.push("\u{1F9EA} Test with a simple schema first to verify your setup"),this.userContext.previousSuccessfulSchemas?.length&&t.push(`\u2705 Compare with your working schema: ${this.userContext.previousSuccessfulSchemas[0]}`)),this.userContext?.isBeginnerMode||(t.push(""),t.push("\u{1F527} Advanced Debugging:"),t.push("\u{1F575}\uFE0F Enable schema validation debugging"),t.push("\u{1F4CA} Check schema statistics and complexity metrics"),t.push("\u26A1 Consider schema preprocessing if dealing with complex inheritance")),t}isRecoverable(){return this.validationErrors.every(t=>!t.includes("circular")&&!t.includes("corruption"))}},ie=class extends ${constructor(t,r,i,s){super(t,"generation",{templateName:r,contextKeys:Object.keys(i),availableTemplates:s?.availableTemplates?.length||0,debugInfo:s});this.templateName=r;this.templateContext=i;this.debugInfo=s;}getSuggestions(){let t=[];if(this.debugInfo?.availableTemplates?.length&&!this.debugInfo.availableTemplates.includes(this.templateName)){t.push(`\u274C Template '${this.templateName}' not found`),t.push("\u{1F4C2} Available templates:"),this.debugInfo.availableTemplates.forEach(i=>{t.push(`   \u2022 ${i}`);});let r=this.findSimilarTemplates(this.templateName,this.debugInfo.availableTemplates);r.length>0&&(t.push("\u{1F914} Did you mean:"),r.forEach(i=>{t.push(`   \u2022 ${i}`);}));}if(this.debugInfo?.missingVariables?.length){t.push("\u{1F4DD} Missing template variables:"),this.debugInfo.missingVariables.forEach(i=>{t.push(`   \u2022 ${i}`);}),t.push("\u{1F4A1} Add these variables to your template context");let r=Object.keys(this.templateContext);this.debugInfo.missingVariables.forEach(i=>{let s=r.filter(o=>this.levenshteinDistance(i.toLowerCase(),o.toLowerCase())<=2);s.length>0&&t.push(`   Similar to: ${s.join(", ")}`);});}if(this.debugInfo?.lineNumber&&(t.push(`\u{1F41B} Check template syntax around line ${this.debugInfo.lineNumber}`),this.debugInfo.columnNumber&&t.push(`   Column: ${this.debugInfo.columnNumber}`),this.debugInfo.templateSource)){let i=this.debugInfo.templateSource.split(`
 `)[this.debugInfo.lineNumber-1];i&&t.push(`   Code: ${i.trim()}`);}return t.push("\u{1F527} Template debugging steps:"),t.push("   \u2022 Enable template debugging: { debug: true }"),t.push("   \u2022 Verify template file exists and has correct syntax"),t.push("   \u2022 Check template variable names match context keys"),t.push("   \u2022 Ensure template engine is properly configured"),t}findSimilarTemplates(t,r){return r.filter(i=>{let s=this.levenshteinDistance(t.toLowerCase(),i.toLowerCase());return s<=2&&s>0}).slice(0,3).sort((i,s)=>this.levenshteinDistance(t.toLowerCase(),i.toLowerCase())-this.levenshteinDistance(t.toLowerCase(),s.toLowerCase()))}levenshteinDistance(t,r){let i=Array(r.length+1).fill(null).map(()=>Array(t.length+1).fill(0));for(let s=0;s<=t.length;s++)i[0][s]=s;for(let s=0;s<=r.length;s++)i[s][0]=s;for(let s=1;s<=r.length;s++)for(let o=1;o<=t.length;o++){let a=t[o-1]===r[s-1]?0:1;i[s][o]=Math.min(i[s]?.[o-1]+1,i[s-1]?.[o]+1,i[s-1]?.[o-1]+a);}return i[r.length]?.[t.length]}isRecoverable(){return  true}},B=class extends ${constructor(t,r,i,s,o){super(t,"writing",{operation:r,filePath:i,originalErrorMessage:s?.message,originalErrorCode:s?.code,recoveryOptions:o});this.operation=r;this.filePath=i;this.originalError=s;this.recoveryOptions=o;}getSuggestions(){let t=[],r=this.originalError?.code;switch(this.operation){case "create":case "write":t.push("\u{1F4C1} File writing troubleshooting:"),t.push("   \u2022 Check if the output directory exists"),t.push("   \u2022 Verify write permissions for the target directory"),t.push("   \u2022 Ensure no other process has the file locked"),this.filePath.includes(" ")&&t.push("   \u2022 File path contains spaces - check path escaping"),this.recoveryOptions?.alternativePaths?.length&&(t.push("\u{1F504} Alternative output directories:"),this.recoveryOptions.alternativePaths.forEach(i=>{t.push(`   \u2022 ${i}`);}));break;case "read":t.push("\u{1F4D6} File reading troubleshooting:"),t.push("   \u2022 Verify the file exists at the specified path"),t.push("   \u2022 Check file read permissions"),t.push("   \u2022 Ensure file is not corrupted");break;case "delete":t.push("\u{1F5D1}\uFE0F File deletion troubleshooting:"),t.push("   \u2022 Check if file is locked by another process"),t.push("   \u2022 Verify delete permissions for the directory"),t.push("   \u2022 Ensure file exists before attempting deletion");break}switch(r){case "EACCES":t.push("\u{1F510} Permission Error:"),t.push("   \u2022 Current user lacks necessary file permissions"),this.recoveryOptions?.permissionFix?t.push(`   \u2022 Fix command: ${this.recoveryOptions.permissionFix}`):t.push(`   \u2022 Try: chmod 755 "${this.filePath}"`),t.push("   \u2022 Consider running with elevated permissions"),t.push("   \u2022 Check directory ownership and permissions");break;case "ENOSPC":if(t.push("\u{1F4BE} Disk Space Error:"),t.push("   \u2022 Insufficient disk space available"),t.push("   \u2022 Free up disk space and retry"),t.push("   \u2022 Consider using a different output directory"),this.recoveryOptions?.diskSpaceRequired){let i=Math.ceil(this.recoveryOptions.diskSpaceRequired/1024/1024);t.push(`   \u2022 Required space: ~${i}MB`);}break;case "ENOENT":t.push("\u{1F4C2} File Not Found:"),t.push("   \u2022 File or directory does not exist"),t.push("   \u2022 Check the file path for typos"),t.push("   \u2022 Ensure parent directories exist"),t.push(`   \u2022 Create directory: mkdir -p "$(dirname "${this.filePath}")"`);break;case "EMFILE":case "ENFILE":t.push("\u{1F4CA} Too Many Open Files:"),t.push("   \u2022 System has reached file handle limit"),t.push("   \u2022 Close unused files and retry"),t.push("   \u2022 Consider processing files in smaller batches");break}return this.recoveryOptions?.canRetry&&(t.push(""),t.push("\u{1F504} Recovery Options:"),t.push("   \u2022 This operation can be retried safely"),t.push("   \u2022 Fix the underlying issue and run again")),t.push(""),t.push("\u{1F50D} General Debugging:"),t.push("   \u2022 Check system logs for more details"),t.push("   \u2022 Verify disk health if errors persist"),t.push("   \u2022 Test with a simpler file path"),t}isRecoverable(){return this.recoveryOptions?.canRetry||false}getRecoveryActions(){let t=[];switch(this.originalError?.code){case "EACCES":t.push({action:"Fix file permissions",command:`chmod 755 "${this.filePath}"`,automatic:false,riskLevel:"medium"});break;case "ENOENT":t.push({action:"Create missing directory",command:`mkdir -p "$(dirname "${this.filePath}")"`,automatic:true,riskLevel:"low"});break;case "ENOSPC":t.push({action:"Free up disk space",automatic:false,riskLevel:"low"});break}return t}},Fe=class extends ${constructor(t,r,i,s,o){super(t,"initialization",{configKey:r,providedValue:i,providedType:typeof i,expectedValue:s,validOptions:o});this.configKey=r;this.providedValue=i;this.expectedValue=s;this.validOptions=o;}getSuggestions(){let t=[];switch(t.push(`\u2699\uFE0F Configuration error for '${this.configKey}'`),t.push(`   Provided: ${JSON.stringify(this.providedValue)} (${typeof this.providedValue})`),this.expectedValue&&t.push(`   Expected: ${this.expectedValue}`),this.validOptions?.length&&(t.push("   Valid options:"),this.validOptions.forEach(r=>{t.push(`   \u2022 ${JSON.stringify(r)}`);})),t.push(""),t.push("\u{1F527} Configuration fixes:"),t.push(`   \u2022 Check the '${this.configKey}' value in your configuration`),t.push("   \u2022 Refer to the configuration documentation"),t.push("   \u2022 Use TypeScript for better config validation"),t.push("   \u2022 Check for typos in configuration keys"),this.configKey){case "outputDir":t.push("   \u2022 Ensure the output directory path exists"),t.push("   \u2022 Use absolute paths for better reliability");break;case "logger":t.push("   \u2022 Provide a valid logger instance"),t.push("   \u2022 Use createLogger() from utils/codegen-logger");break;case "validation":t.push('   \u2022 Set to true, false, or "strict"');break}return t}isRecoverable(){return  true}},$e=class extends ${constructor(t,r){super(t,"generation",{errorCount:r.length,errorTypes:[...new Set(r.map(i=>i.constructor.name))],phases:[...new Set(r.map(i=>i.phase))]});this.errors=r;}getSuggestions(){let t=this.errors.flatMap(a=>a.getSuggestions()),r=[...new Set(t)],i=[];i.push(`\u{1F4CA} Batch operation failed with ${this.errors.length} errors:`);let s=new Map;this.errors.forEach(a=>{let c=a.constructor.name;s.has(c)||s.set(c,[]),s.get(c)?.push(a);}),i.push(""),i.push("\u{1F50D} Error breakdown:");for(let[a,c]of s)i.push(`   \u2022 ${a}: ${c.length} occurrences`);i.push("\u{1F4A1} Most relevant suggestions:");let o=r.slice(0,8).map(a=>`   ${a}`);return i.push(...o),i}getErrorBreakdown(){let t=[];return this.errors.forEach((r,i)=>{t.push(`${i+1}. ${r.constructor.name}: ${r.message}`),r.context?.schemaName&&t.push(`   Schema: ${r.context.schemaName}`),r.context?.filename&&t.push(`   File: ${r.context.filename}`),t.push("");}),t.join(`
 `)}isRecoverable(){return this.errors.some(t=>t.isRecoverable())}getRecoverableErrors(){return this.errors.filter(t=>t.isRecoverable())}getNonRecoverableErrors(){return this.errors.filter(t=>!t.isRecoverable())}};});var nr={};je(nr,{FileBuilder:()=>ut});var ut,sr=le(()=>{ne();ut=class{config;content="";imports=new Map;exports=new Set;metadata=new Map;beforeSaveHooks=[];afterSaveHooks=[];errorHooks=[];options={template:void 0,importStrategy:"auto",validation:"strict",prettify:true,formatting:{indentSize:2,useTabs:false,maxLineLength:100},encoding:"utf-8"};constructor(e){this.config=e;}withContent(e){return this.content=typeof e=="string"?e:e(),this}withTemplate(e,t){if(!this.config.templateEngine)throw new ie(`Template engine is required for template rendering. Template: '${e}'`,e,t);this.options.template=e;try{this.content=this.config.templateEngine.render(e,{...t,imports:this.imports,exports:this.exports,filename:this.config.filename});}catch{throw new ie(`Failed to render template '${e}'`,e,t,{availableTemplates:this.config.templateEngine.getAvailableTemplates?.()||[]})}return this}appendContent(e){return this.content+=e,this}prependContent(e){return this.content=e+this.content,this}withImports(e){this.imports.clear();for(let[t,r]of e)this.imports.set(t,r);return this}addImport(e,t){return this.imports.set(e,t),this}addImports(e,t){for(let r of e)this.imports.set(r,t);return this}withExports(e){this.exports.clear();for(let t of e)this.exports.add(t);return this}addExport(e){return this.exports.add(e),this}addExports(e){for(let t of e)this.exports.add(t);return this}withMetadata(e,t){return this.metadata.set(e,t),this}withOptions(e){return this.options={...this.options,...e},this}onBeforeSave(e){return this.beforeSaveHooks.push(e),this}onAfterSave(e){return this.afterSaveHooks.push(e),this}onError(e){return this.errorHooks.push(e),this}build(){let e=this.buildFinalContent();return {filename:this.config.filename,content:e,imports:new Map(this.imports),exports:new Set(this.exports),metadata:Object.fromEntries(this.metadata),templateName:this.options.template}}async save(){let e=this.build();try{for(let i of this.beforeSaveHooks)await i(e);this.options.validation!=="none"&&await this.validateContent(e.content);let t=await this.config.fileManager.writeFile(this.config.filename,e.content,{encoding:this.options.encoding}),r={size:t.size,generationTime:0,writeTime:t.writeTime};for(let i of this.afterSaveHooks)await i(t.path,r);return this.config.logger.debug(`Saved ${this.config.filename} successfully`),t.path}catch(t){for(let r of this.errorHooks)try{await r(t instanceof Error?t:new Error(String(t)),e);}catch(i){this.config.logger.warn(`Error hook failed: ${i instanceof Error?i.message:String(i)}`);}throw t}}buildFinalContent(){let e=[];this.imports.size>0&&this.options.importStrategy!=="none"&&(e.push(this.generateImportStatements()),e.push("")),this.content&&e.push(this.content),this.exports.size>0&&!this.content.includes("export")&&(e.push(""),e.push(this.generateExportStatements()));let t=e.join(`
@@ -11,14 +11,14 @@ import Ei from'yargs';import {hideBin}from'yargs/helpers';import'perf_hooks';imp
 `).replace(/\n{3,}/g,`
 
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-`}generateSimpleExports(e){e.push("// Exports");let t=Array.from(this.exports.entries());this.sortFunction?t=t.sort(this.sortFunction):t=t.sort(([i],[s])=>i.localeCompare(s));let r=new Map;for(let[i,s]of t)r.has(s)||r.set(s,[]),r.get(s)?.push(i);for(let[i,s]of r){let o=s.sort();o.length===1?e.push(`export type { ${o[0]} } from './${i}';`):o.length<=3?e.push(`export type { ${o.join(", ")} } from './${i}';`):(e.push("export type {"),o.forEach((a,c)=>{let l=c===o.length-1;e.push(`	${a}${l?"":","}`);}),e.push(`} from './${i}';`));}}generateGroupedExports(e){if(!this.groupingFunction)return;let t=new Map;for(let[i,s]of this.exports){let o=this.groupingFunction(i);t.has(o)||t.set(o,new Map);let a=t.get(o);a.has(s)||a.set(s,[]),a.get(s)?.push(i);}let r=Array.from(t.entries()).sort();for(let[i,s]of r){e.push(`// ${i}`);for(let[o,a]of s){let c=a.sort();c.length===1?e.push(`export type { ${c[0]} } from './${o}';`):e.push(`export type { ${c.join(", ")} } from 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o=(g,h)=>s[S(g)]?.fhirSchemas[h]||t&&s[S(t)]?.fhirSchemas[h],a=(g,h)=>s[S(g)]?.valueSets[h]||t&&s[S(t)]?.valueSets[h],c=g=>g.match(/^[a-zA-Z0-9]+$/)&&`http://hl7.org/fhir/StructureDefinition/${g}`||g,l=(g,h)=>{let u=o(g,h);if(u===void 0)throw new Error(`Failed to resolve FHIR Schema: '${h}'`);let f=[u];for(;u?.base;){let y=u.package_meta,T=c(u.base);if(u=o(y,T),u===void 0)throw new Error(`Failed to resolve FHIR Schema base for '${h}'. 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e=n.reverse(),t=Object.assign({},...e);return t.elements=void 0,t}var D=class{manager;options;cacheConfig;cache;logger;constructor(e={},t){this.options={verbose:false,...e},this.manager=e.manager||CanonicalManager({packages:[],workingDir:"tmp/fhir"}),this.cacheConfig=t,this.logger=e.logger||I({verbose:this.options.verbose,prefix:"TypeSchema"});}async initializeCache(){this.cacheConfig&&!this.cache&&(this.cache=new O(this.cacheConfig),await this.cache.initialize());}async registerFromPackageMetas(e){let t=e.map(S);return this.logger?.step(`Loading FHIR packages: ${t.join(", ")}`),await this.manager.init(),ee(this.manager,{focusedPackages:e})}generateFhirSchemas(e){this.logger?.progress(`Converting ${e.length} StructureDefinitions to FHIRSchemas`);let t=this.applyStructureDefinitionTreeshaking(e),r=[],i=0,s=0;for(let o of t)try{let a=jt.translate(o);r.push(a),i++,this.logger?.debug(`Converted StructureDefinition: ${o.name||o.id} 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this.cache.values())if(t.identifier.url===e)return  true;return  false}delete(e){let t=this.generateKey(e);return this.cache.delete(t)}deleteByUrl(e){for(let[t,r]of this.cache.entries())if(r.identifier.url===e)return this.cache.delete(t);return  false}getByPackage(e){let t=[];for(let r of this.cache.values())r.identifier.package===e&&t.push(r);return t}getByKind(e){let t=[];for(let r of this.cache.values())r.identifier.kind===e&&t.push(r);return t}setMany(e){for(let t of e)this.set(t);}clear(){this.cache.clear();}generateKey(e){return `${e.package}:${e.version}:${e.kind}:${e.name}`}async initialize(){this.config.enablePersistence&&this.cacheDir&&(existsSync(this.cacheDir)||mkdirSync(this.cacheDir,{recursive:true}),await this.loadFromDisk());}async loadFromDisk(){if(!(!this.cacheDir||!existsSync(this.cacheDir)))try{let t=(await readdir(this.cacheDir)).filter(r=>r.endsWith(".typeschema.json"));for(let r of t){let i=join(this.cacheDir,r),s=await 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readdir(this.cacheDir)).filter(r=>r.endsWith(".typeschema.json"));for(let r of t)await unlink(join(this.cacheDir,r));}catch(e){console.warn("Failed to clear cache directory:",e);}}};var Gr=async(n,e)=>{let r=(await n.packageJson(e.name)).dependencies;return r!==void 0?Object.entries(r).map(([i,s])=>({name:i,version:s})):[]},Vt=n=>({pkg:n,canonicalResolution:{},fhirSchemas:{},valueSets:{}}),Gt=async(n,e,t,r,i)=>{let s=S(e);if(i?.info(`${" ".repeat(t*2)}+ ${s}`),r[s])return r[s];let o=Vt(e);for(let c of await n.search({package:e})){let l=c.url;if(!l||!(isStructureDefinition(c)||Ke(c)||$t(c)))continue;let p=l;o.canonicalResolution[p]&&i?.dry_warn(`Duplicate canonical URL: ${p} at ${s}.`),o.canonicalResolution[p]=[{deep:t,pkg:e,pkgId:s,resource:c}];}let a=await Gr(n,e);for(let c of a){let{canonicalResolution:l}=await Gt(n,c,t+1,r,i);for(let[p,d]of Object.entries(l)){let m=p;o.canonicalResolution[m]=[...o.canonicalResolution[m]||[],...d];}}for(let c of Object.values(o.canonicalResolution))c.sort((l,p)=>l.deep-p.deep);return r[s]=o,o},At=(n,e,t)=>{let r=Object.values(n).flatMap(i=>i.canonicalResolution[e]);if(!r)throw new Error(`No canonical resolution found for ${e} in any package`);return r[0]?.resource},ee=async(n,{logger:e,fallbackPackageForNameResolution:t,focusedPackages:r})=>{let i=r??await n.packages(),s={};for(let g of i)await Gt(n,g,0,s,e);for(let{pkg:g,canonicalResolution:h}of Object.values(s)){let u=S(g);if(!s[u])throw new Error(`Package ${u} not found`);let f=0;e?.info(`FHIR Schema conversion for '${S(g)}' begins...`);for(let[y,T]of Object.entries(h)){let v=T[0];if(!v)throw new Error("Resource not found");let w=v.resource,Y=v.pkg;if(isStructureDefinition(w)){let k=We(jt.translate(w),Y);f++,s[u].fhirSchemas[k.url]=k;}if(Ke(w)){let k=Rt(w,Y);s[u].valueSets[k.url]=k;}}e?.info(`FHIR Schema conversion for '${S(g)}' completed: ${f} successful`);}let o=(g,h)=>s[S(g)]?.fhirSchemas[h]||t&&s[S(t)]?.fhirSchemas[h],a=(g,h)=>s[S(g)]?.valueSets[h]||t&&s[S(t)]?.valueSets[h],c=g=>g.match(/^[a-zA-Z0-9]+$/)&&`http://hl7.org/fhir/StructureDefinition/${g}`||g,l=(g,h)=>{let u=o(g,h);if(u===void 0)throw new Error(`Failed to resolve FHIR Schema: '${h}'`);let f=[u];for(;u?.base;){let y=u.package_meta,T=c(u.base);if(u=o(y,T),u===void 0)throw new Error(`Failed to resolve FHIR Schema base for '${h}'. Problem: '${T}' from '${S(y)}'`);f.push(u);}return f};return {...n,testAppendFs(g){let h=We(g),u=S(h.package_meta);s[u]||(s[u]=Vt(h.package_meta)),s[u].fhirSchemas[h.url]=h;},resolveFs:o,resolveFsGenealogy:l,resolveFsSpecializations:(g,h)=>l(g,h).filter(u=>u.derivation==="specialization"),ensureSpecializationCanonicalUrl:c,resolveSd:(g,h)=>{let u=At(s,h);if(isStructureDefinition(u))return u},allFs:()=>Object.values(s).flatMap(g=>Object.values(g.fhirSchemas)),allVs:()=>Object.values(s).flatMap(g=>Object.values(g.valueSets)),resolveVs:a,resolveAny:g=>At(s,g),resolveElementSnapshot:(g,h)=>{let u=l(g.package_meta,g.url),f=Ur(u,h);return Hr(f)},getAllElementKeys:g=>{let h=new Set;for(let[u,f]of Object.entries(g)){h.add(u);for(let y of f?.choices||[])g[y]||h.add(y);}return Array.from(h)},resolver:s}};var Ur=(n,e)=>{let[t,...r]=e;return t===void 0?[]:n.map(i=>{if(!i.elements)return;let s=i.elements?.[t];for(let o of r)s=s?.elements?.[o];return s}).filter(i=>i!==void 0)};function Hr(n){let e=n.reverse(),t=Object.assign({},...e);return t.elements=void 0,t}var D=class{manager;options;cacheConfig;cache;logger;constructor(e={},t){this.options={verbose:false,...e},this.manager=e.manager||CanonicalManager({packages:[],workingDir:"tmp/fhir"}),this.cacheConfig=t,this.logger=e.logger||I({verbose:this.options.verbose,prefix:"TypeSchema"});}async initializeCache(){this.cacheConfig&&!this.cache&&(this.cache=new O(this.cacheConfig),await this.cache.initialize());}async registerFromPackageMetas(e){let t=e.map(S);return this.logger?.step(`Loading FHIR packages: ${t.join(", ")}`),await this.manager.init(),ee(this.manager,{focusedPackages:e})}generateFhirSchemas(e){this.logger?.progress(`Converting ${e.length} StructureDefinitions to FHIRSchemas`);let t=this.applyStructureDefinitionTreeshaking(e),r=[],i=0,s=0;for(let o of t)try{let a=jt.translate(o);r.push(a),i++,this.logger?.debug(`Converted StructureDefinition: ${o.name||o.id} (${o.resourceType})`);}catch(a){s++,this.logger?.warn(`Failed to convert StructureDefinition ${o.name||o.id}: ${a instanceof Error?a.message:String(a)}`);}return this.logger?.success(`FHIR Schema conversion completed: ${i}/${t.length} successful, ${s} failed`),r}async generateValueSetSchemas(e,t){e.length>0&&this.logger?.debug(`${e.length} ValueSets available for enum extraction`);let r=await ee(this.manager,{logger:this.logger}),i=[];if(e.length>0){this.logger?.progress(`Converting ${e.length} ValueSets to TypeSchema`);let s=0,o=0;for(let a of e)try{let c=await be(r,a,t);c&&(i.push(c),s++,this.logger?.debug(`Converted ValueSet: ${a.name||a.id}`));}catch(c){o++,this.logger?.warn(`Failed to convert ValueSet ${a.name||a.id}: ${c instanceof Error?c.message:String(c)}`);}this.logger?.success(`ValueSet conversion completed: ${s}/${e.length} successful, ${o} failed`);}return i}async generateFromPackage(e,t,r){if(await this.initializeCache(),this.cache&&!(this.cacheConfig?.forceRegenerate??false)){let l=this.cache.getByPackage(e);if(l.length>0)return this.logger?.info(`Using cached TypeSchemas for package: ${e} (${l.length} schemas)`),l}let i={name:e,version:t||"latest"},s=await this.registerFromPackageMetas([i]),o=await this.generateValueSetSchemas(s.allVs(),r),c=[...(await Promise.all(s.allFs().map(async l=>await ve(s,l,r)))).flat(),...o];if(this.cache)for(let l of c)await this.cache.set(l);return c}applyStructureDefinitionTreeshaking(e){let t=this.options.treeshake;if(!t||t.length===0)return e;this.logger?.info(`Applying treeshaking filter for ResourceTypes: ${t.join(", ")}`);let r=new Map,i=new Map,s=new Map;for(let p of e){let d=p.name||p.id;d&&(r.set(d,p),i.set(d,new Set),s.set(d,new Set));}for(let p of e){let d=p.name||p.id;if(!d)continue;let{realDeps:m,refTargets:g}=this.extractStructureDefinitionDependenciesWithReferences(p);i.set(d,new Set(m)),s.set(d,new Set(g));}let o=new Set;for(let p of t)r.has(p)?o.add(p):this.logger?.warn(`ResourceType '${p}' not found in structure definitions`);let a=(p,d=new Set)=>{if(d.has(p)||!i.has(p))return;d.add(p);let m=i.get(p)||new Set;for(let g of Array.from(m))r.has(g)&&(o.add(g),a(g,d));};for(let p of Array.from(o))a(p);let c=e.filter(p=>{let d=p.name||p.id;return d&&o.has(d)}),l=new Set;for(let p of e){let d=p.name||p.id;d&&!o.has(d)&&Array.from(s.values()).some(g=>g.has(d))&&l.add(d);}return l.size>0&&this.logger?.info(`Excluded reference-only targets: ${Array.from(l).join(", ")}`),this.logger?.success(`Treeshaking completed: kept ${c.length}/${e.length} structure definitions`),c}extractStructureDefinitionDependenciesWithReferences(e){let t=new Set,r=new Set;if(e.baseDefinition){let i=this.extractResourceNameFromUrl(e.baseDefinition);i&&t.add(i);}if(e.snapshot?.element||e.differential?.element){let i=e.snapshot?.element||e.differential?.element;for(let s of i)if(s.type)for(let o of s.type){if(o.code&&(t.add(o.code),o.code==="Reference"&&o.targetProfile))for(let a of o.targetProfile){let c=this.extractResourceNameFromUrl(a);c&&r.add(c);}if(o.profile)for(let a of o.profile){let c=this.extractResourceNameFromUrl(a);c&&t.add(c);}}}return {realDeps:Array.from(t),refTargets:Array.from(r)}}extractResourceNameFromUrl(e){let t=e.match(/\/([^/]+)$/);return t?t[1]??null:null}};var W=class{options;constructor(e={}){this.options={format:"auto",validate:true,strict:false,...e};}async parseFromFile(e){let t=await readFile(e,"utf-8"),r=this.options.format==="auto"?this.detectFormat(t,e):this.options.format;return this.parseFromString(t,r)}async parseFromString(e,t){let r=t||this.detectFormat(e),i;return r==="ndjson"?i=this.parseNDJSON(e):i=this.parseJSON(e),this.options.validate&&this.validateSchemas(i),i}async parseFromFiles(e){let t=[];for(let r of e){let i=await this.parseFromFile(r);t.push(...i);}return t}parseSchema(e){if(!e.identifier)throw new Error("TypeSchema must have an identifier");if(!this.isValidIdentifier(e.identifier))throw new Error("TypeSchema identifier is invalid");return e}findByIdentifier(e,t){return e.filter(r=>this.matchesIdentifier(r.identifier,t))}findByUrl(e,t){return e.find(r=>r.identifier.url===t)}findByKind(e,t){return e.filter(r=>r.identifier.kind===t)}findByPackage(e,t){return e.filter(r=>r.identifier.package===t)}detectFormat(e,t){if(t){if(t.endsWith(".ndjson"))return "ndjson";if(t.endsWith(".json"))return "json"}let r=e.trim();if(r.includes(`
 `)){let i=r.split(`
 `).filter(s=>s.trim());if(i.length>1)try{return i[0]&&JSON.parse(i[0]),"ndjson"}catch{}}return "json"}parseNDJSON(e){let t=[],r=e.split(`
 `).filter(i=>i.trim());for(let i of r)try{let s=JSON.parse(i);t.push(this.parseSchema(s));}catch(s){if(this.options.strict)throw new Error(`Failed to parse NDJSON line: ${s}`)}return t}parseJSON(e){try{let t=JSON.parse(e);return Array.isArray(t)?t.map(r=>this.parseSchema(r)):[this.parseSchema(t)]}catch(t){throw new Error(`Failed to parse JSON: ${t}`)}}validateSchemas(e){for(let t of e){if(!t.identifier)throw new Error("Schema missing identifier");if(!this.isValidIdentifier(t.identifier))throw new Error(`Invalid identifier in schema: ${JSON.stringify(t.identifier)}`)}}isValidIdentifier(e){return typeof e=="object"&&e!==null&&typeof e.kind=="string"&&typeof e.package=="string"&&typeof e.version=="string"&&typeof e.name=="string"&&typeof e.url=="string"}matchesIdentifier(e,t){return (!t.kind||e.kind===t.kind)&&(!t.package||e.package===t.package)&&(!t.version||e.version===t.version)&&(!t.name||e.name===t.name)&&(!t.url||e.url===t.url)}};var te="Use CodeableReference which is not provided by FHIR R4.",qr="Use Availability which is not provided by FHIR R4.",Ht={"hl7.fhir.uv.extensions.r4#1.0.0":{"http://hl7.org/fhir/StructureDefinition/extended-contact-availability":qr,"http://hl7.org/fhir/StructureDefinition/immunization-procedure":te,"http://hl7.org/fhir/StructureDefinition/specimen-additive":te,"http://hl7.org/fhir/StructureDefinition/workflow-barrier":te,"http://hl7.org/fhir/StructureDefinition/workflow-protectiveFactor":te,"http://hl7.org/fhir/StructureDefinition/workflow-reason":te},"hl7.fhir.r5.core#5.0.0":{"http://hl7.org/fhir/StructureDefinition/shareablecodesystem":"FIXME: CodeSystem.concept.concept defined by ElementReference. FHIR Schema generator output broken value in it, so we just skip it for now."}},_t=async(n,e)=>{let t=[];for(let r of n.allFs()){let i=S(r.package_meta);if(Ht[i]?.[r.url]){e?.dry_warn(`Skip ${r.url} from ${i}. Reason: ${Ht[i]?.[r.url]}`);continue}t.push(...await ve(n,r,e));}for(let r of n.allVs())t.push(await be(n,r));return t};var nt=n=>n.split(/(?<=[a-z])(?=[A-Z])|[-_.\s]/).filter(Boolean),re=n=>nt(n).map(e=>e.toLowerCase()).join("-"),zt=n=>{if(n.length===0)throw new Error("Empty string");return n[0]?.toUpperCase()+n.substring(1).toLowerCase()},qt=n=>{if(n.length===0)throw new Error("Empty string");let[e,...t]=nt(n);return [e?.toLowerCase(),...t.map(zt)].join("")},G=n=>nt(n).map(zt).join("");var E=n=>!n||n.length===0?n:n.charAt(0).toUpperCase()+n.slice(1),xe=n=>n.map(e=>E(e));var Wt=n=>`<${n.identifier.url}> from ${n.identifier.package}#${n.identifier.version}`;var ot=class{opts;currentDir;currentFileDescriptor;writtenFilesSet=new Set;constructor(e){this.opts=e,this.currentDir=e.outputDir;}logger(){return this.opts.logger}cd(e,t){let r=this.currentDir;this.currentDir=e.startsWith("/")?R.join(this.opts.outputDir,e):R.join(this.currentDir,e),F.existsSync(this.currentDir)||F.mkdirSync(this.currentDir,{recursive:true}),this.logger()?.debug(`cd '${this.currentDir}'`),t(),this.currentDir=r;}cat(e,t){if(this.currentFileDescriptor)throw new Error("Can't open file in file");if(e.includes("/"))throw new Error(`Change file path separatly: ${e}`);let r=`${this.currentDir}/${e}`;try{this.currentFileDescriptor=F.openSync(r,"w"),this.writtenFilesSet.add(e),this.logger()?.debug(`cat > '${r}'`),t();}finally{this.currentFileDescriptor&&(F.fsyncSync(this.currentFileDescriptor),F.closeSync(this.currentFileDescriptor)),this.currentFileDescriptor=void 0;}}write(e){if(!this.currentFileDescriptor)throw new Error("No file opened");F.writeSync(this.currentFileDescriptor,e);}async generate(e){throw new Error("Not implemented")}writtenFiles(){return Array.from(this.writtenFilesSet)}},J=class extends ot{currentIndent=0;indent(){this.currentIndent+=this.opts.tabSize;}deindent(){this.currentIndent-=this.opts.tabSize;}writeIndent(){this.write(" ".repeat(this.currentIndent));}line(...e){e.length===0?this.write(`
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Jt={"!":"Not","<=":"LessOrEqual",">=":"GreaterOrEqual","<":"Less",">":"Greater","=":"Equal","-":"Dash","+":"Plus","*":"Asterisk","/":"Slash","%":"Percent","&":"And","|":"Or","^":"Xor","~":"Tilde","?":"Question",".":"Dot"};function Wr(n){return n.split("-").map(e=>E(e)).join("-")}function Jr(n){let e=n;for(let t in Jt)e=e.replaceAll(t,Jt[t]??"");return e}function Kr(n){let e=Number(n[0]);return Number.isInteger(e)&&!Number.isNaN(e)?`_${n}`:n}function Kt(n){let e=Wr(n);return e=Kr(e),e=Jr(e),e=E(e),e}function M(n){return E(qt(n.replaceAll(".","-")))}var Yr={boolean:"bool",instant:"string",time:"string",date:"string",dateTime:"string",decimal:"decimal",integer:"int",unsignedInt:"long",positiveInt:"long",integer64:"long",base64Binary:"string",uri:"string",url:"string",canonical:"string",oid:"string",uuid:"string",string:"string",code:"string",markdown:"string",id:"string",xhtml:"string"},Zr=["Reference","Expression"],Xr=n=>n.required?["required"]:[],Qr=n=>{let e=Qt(Xt(n.identifier));return E(e)},ei=n=>n.base?`: ${n.base.name}`:"",ti=(n,e=true)=>{if(!n)return;let t=n.split("/").pop();if(t&&(e&&t.includes("#")&&(t=t.split("#")[0]),!!t))return /^\d/.test(t)&&(t=`number_${t}`),M(t)},Xt=n=>{if(n.kind==="nested"){let e=n.url,t=ti(e,false);if(!t)return "";let[r,i]=t.split("#"),s=xe((i??"").split(".")).join("");return M([r,s].join(""))}return M(n.name)},ri=n=>Zr.includes(n),Qt=n=>ri(n)?`Resource${n}`:n,we=class extends J{enums={};constructor(e){super({tabSize:4,withDebugComment:false,commentLinePrefix:"//",...e});}async generate(e){let t=e.collectComplexTypes(),r=e.collectResources(),i=Array.from(new Set(r.map(s=>M(s.identifier.package))));this.generateAllFiles(t,r,i),this.copyStaticFiles();}generateAllFiles(e,t,r){this.generateUsingFile(r),this.generateBaseTypes(e),this.generateResources(t),this.generateEnumFiles(r),this.generateResourceDictionaries(t,r),this.generateHelperFile();}generateType(e,t){let r=Qr(e),i=ei(e);this.curlyBlock(["public","class",r,i],()=>{this.generateFields(e,t),this.generateNestedTypes(e,t),this.line(),this.includeHelperMethods();}),this.line();}generateFields(e,t){if(!e.fields)return;let r=Object.entries(e.fields).sort(([i],[s])=>i.localeCompare(s));for(let[i,s]of r)this.generateField(i,s,t);}generateNestedTypes(e,t){if(!(!("nested"in e)||!e.nested)){this.line();for(let r of e.nested)this.generateType(r,t);}}generateField(e,t,r){try{if(q(t))return;let i=this.buildFieldDeclaration(e,t,r);this.line(...i);}catch(i){this.logger()?.error(`Error processing field ${e}: ${i.message}`);}}buildFieldDeclaration(e,t,r){let i=this.determineFieldType(e,t,r),s=Xr(t),o=G(e);return ["public",...s,i,o,"{ get; set; }"].filter(Boolean)}determineFieldType(e,t,r){let i=this.getBaseTypeName(t);"enum"in t&&t.enum&&(i=this.registerAndGetEnumType(e,t,r)),i=Qt(i);let s="",o=t.required?"":"?",a=t.array?"[]":"";return `${s}${i}${a}${o}`}getBaseTypeName(e){if("type"in e){let t=e.type.name.toString();return e.type.kind==="nested"?t=Xt(e.type):e.type.kind==="primitive-type"&&(t=Yr[e.type.name]??"string"),t}return ""}registerAndGetEnumType(e,t,r){let s=`${M(t.binding?.name??e)}Enum`;return this.enums[r]||(this.enums[r]={}),t.enum&&(this.enums[r][s]=t.enum),s}includeHelperMethods(){this.line("public override string ToString() => "),this.line("    JsonSerializer.Serialize(this, Helper.JsonSerializerOptions);"),this.line();}generateUsingFile(e){this.cd("/",async()=>{this.cat("Usings.cs",()=>{this.generateDisclaimer(),this.generateGlobalUsings(e);});});}generateGlobalUsings(e){let t=["CSharpSDK","System.Text.Json","System.Text.Json.Serialization",this.opts.targetNamespace,...e.map(r=>`${this.opts.targetNamespace}.${r}`)];for(let r of t)this.lineSM("global","using",r);}generateBaseTypes(e){this.cd("/",async()=>{this.cat("base.cs",()=>{this.generateDisclaimer(),this.line(),this.lineSM("namespace",this.opts.targetNamespace);for(let t of e){let r=M(t.identifier.package);this.generateType(t,r);}});});}generateResources(e){for(let t of e)this.generateResourceFile(t);}generateResourceFile(e){let t=M(e.identifier.package);this.cd(`/${t}`,async()=>{this.cat(`${e.identifier.name}.cs`,()=>{this.generateDisclaimer(),this.line(),this.lineSM("namespace",`${this.opts.targetNamespace}.${t}`),this.line(),this.generateType(e,t);});});}generateEnumFiles(e){for(let t of e)this.generatePackageEnums(t);}generatePackageEnums(e){let t=this.enums[e];!t||Object.keys(t).length===0||this.cd(`/${e}`,async()=>{this.cat(`${e}Enums.cs`,()=>{this.generateDisclaimer(),this.generateEnumFileContent(e,t);});});}generateEnumFileContent(e,t){this.lineSM("using","System.ComponentModel"),this.line(),this.lineSM(`namespace ${this.opts.targetNamespace}.${e}`);for(let[r,i]of Object.entries(t))this.generateEnum(r,i);}generateEnum(e,t){this.curlyBlock(["public","enum",e],()=>{for(let r of t)this.line(`[Description("${r}")]`),this.line(`${Kt(r)},`);}),this.line();}generateResourceDictionaries(e,t){this.cd("/",async()=>{for(let r of t){let i=e.filter(s=>M(s.identifier.package)===r);if(i.length===0)return;this.cat(`${r}ResourceDictionary.cs`,()=>{this.generateDisclaimer(),this.line(),this.lineSM(`namespace ${this.opts.targetNamespace}`),this.generateResourceDictionaryClass(r,i);});}});}generateResourceDictionaryClass(e,t){this.curlyBlock(["public","static","class","ResourceDictionary"],()=>{this.curlyBlock(["public static readonly Dictionary<Type, string> Map = new()"],()=>{for(let r of t){let i=r.identifier.name;this.line(`{ typeof(${e}.${i}), "${i}" },`);}}),this.lineSM();});}copyStaticFiles(){if(!this.opts.staticSourceDir)return;let e=R__default.resolve(this.opts.staticSourceDir);F__default.cpSync(e,this.opts.outputDir,{recursive:true});}generateHelperFile(){let e="src/api/writer-generator/csharp/Helper.cs",t=R__default.join(this.opts.outputDir,"Helper.cs");F__default.copyFileSync(e,t);}};var at=n=>{let e={};for(let t of n){let r=t.identifier.package;e[r]||(e[r]=[]),e[r].push(t);}for(let[t,r]of Object.entries(e)){let i={};for(let o of r)i[JSON.stringify(o.identifier)]=o;let s=Object.values(i);s.sort((o,a)=>o.identifier.name.localeCompare(a.identifier.name)),e[t]=s;}return e},ii=(n,e,t)=>{if(n=structuredClone(n),kt(n)||Ft(n)||Z(n))return n;for(let r of e.ignoreFields??[]){if(n.fields&&!n.fields[r])throw new Error(`Field ${r} not found`);n.fields&&delete n.fields[r];}return n.dependencies=tt(n.identifier,n.base,n.fields,n.nested),n},rr=(n,e,t)=>{let r=[];for(let[o,a]of Object.entries(e))for(let[c,l]of Object.entries(a)){let p=n.resolveByUrl(o,c);if(!p)throw new Error(`Schema not found for ${o} ${c}`);let d=ii(p,l);r.push(d);}let i=(o,a)=>{if(o.length===0)return Object.values(a);for(let l of o)a[JSON.stringify(l.identifier)]=l;let c=[];for(let l of o)if(z(l)){if(!l.dependencies)continue;if(l.dependencies.forEach(p=>{let d=n.resolve(p);if(!d)throw new Error(`Schema not found for ${p}`);let m=JSON.stringify(d.identifier);a[m]||c.push(d);}),l.nested)for(let p of l.nested){if(N(p.identifier))continue;let d=JSON.stringify(p.identifier);a[d]||c.push(p);}}return i(c,a)},s=i(r,{});return ct(s,t)},ni=n=>{let e=n.filter(P),t=[];for(let s of e)s.base&&t.push({parent:s.base,child:s.identifier});let r=[...t],i=s=>{let o=t.filter(c=>c.parent.name===s.name).map(c=>c.child),a=[];for(let c of o)a.push(...i(c));return [...o,...a]};for(let s of t){let o=i(s.child);for(let a of o)t.some(c=>c.parent.name===s.parent.name&&c.child.name===a.name)||r.push({parent:s.parent,child:a});}return r},ct=(n,e)=>{let t={},r=u=>{let f=u.identifier.url,y=u.identifier.package;if(t[f]||(t[f]={}),t[f][u.identifier.package]&&y!=="shared"){let T=JSON.stringify(u.identifier,void 0,2),v=JSON.stringify(t[f][y]?.identifier,void 0,2);if(T!==v)throw new Error(`Duplicate schema: ${T} and ${v}`);return}t[f][y]=u;};for(let u of n)r(u);let i=ni(n),s=u=>t[u.url]?.[u.package],o=(u,f)=>t[f]?.[u],a=u=>i.filter(f=>f.parent.name===u.name).map(f=>f.child),c=u=>{let f=[],y=u;for(;y;){f.push(y);let T=y.base;if(T===void 0)break;let v=s(T);if(!v){e?.warn(`Failed to resolve base type: ${f.map(w=>`${w.identifier.url} (${w.identifier.kind})`).join(", ")}`);return}y=v;}return f},l=u=>{let f=c(u);if(f===void 0)throw new Error(`Failed to resolve base type: ${u.identifier.url} (${u.identifier.kind})`);return f},p=u=>{let f=l(u).find(y=>y.identifier.kind!=="profile");if(!f)throw new Error(`No non-constraint schema found in hierarchy for: ${u.identifier.name}`);return f};return {_schemaIndex:t,_relations:i,collectComplexTypes:()=>n.filter(wt),collectResources:()=>n.filter(P),collectLogicalModels:()=>n.filter(Ct),collectProfiles:()=>n.filter(de),resolve:s,resolveByUrl:o,resourceChildren:a,tryHierarchy:c,hierarchy:l,findLastSpecialization:p,findLastSpecializationByIdentifier:u=>{let f=s(u);return f?p(f).identifier:u},flatProfile:u=>{let f=l(u),y=f.filter(k=>k.identifier.kind==="profile"),T=f.find(k=>k.identifier.kind!=="profile");if(!T)throw new Error(`No non-constraint schema found in hierarchy for ${u.identifier.name}`);let v={};for(let k of y.slice().reverse()){let ae=k;if(ae.fields)for(let[ce,vt]of Object.entries(ae.fields))v[ce]?v[ce]={...v[ce],...vt}:v[ce]={...vt};}let w={};for(let k of y.flatMap(ae=>ae.dependencies??[]))w[k.url]=k;let Y=Object.values(w);return {...u,base:T.identifier,fields:v,dependencies:Y}},isWithMetaField:u=>{let f=c(u);return f?f.filter(z).some(y=>y.fields?.meta!==void 0):false},exportTree:async u=>{let f={};for(let[T,v]of Object.entries(at(n))){f[T]={"primitive-type":{},"complex-type":{},resource:{},"value-set":{},nested:{},binding:{},profile:{},logical:{}};for(let w of v){w.identifier;f[T][w.identifier.kind][w.identifier.url]={};}}let y=u.endsWith(".yaml")?tr.stringify(f):JSON.stringify(f,void 0,2);await L.mkdir(R.dirname(u),{recursive:true}),await L.writeFile(u,y);}}};ne();var Re=class{constructor(e){this.options=e;}handleError(e,t){e instanceof $?this.handleGeneratorError(e,t):this.handleUnknownError(e,t);}handleBatchErrors(e){let t=e.filter(i=>i instanceof $),r=e.filter(i=>!(i instanceof $));t.length>0&&this.reportBatchErrors(t),r.forEach(i=>{this.handleUnknownError(i);});}handleGeneratorError(e,t){switch(this.options.outputFormat){case "json":this.reportErrorAsJson(e);break;case "structured":this.reportErrorStructured(e);break;default:this.reportErrorToConsole(e);}}handleUnknownError(e,t){this.options.logger.error("Unexpected error occurred:",e),this.options.verbose&&(this.options.logger.error(`
+`);for(let r of t)this.line(this.opts.commentLinePrefix,r);}debugComment(...e){this.opts.withDebugComment&&(e=e.map(t=>typeof t=="string"?t:JSON.stringify(t,null,2)),this.comment(...e));}disclaimer(){return ["WARNING: This file is autogenerated by @atomic-ehr/codegen.","GitHub: https://github.com/orgs/atomic-ehr/repositories","Any manual changes made to this file may be overwritten."]}generateDisclaimer(){this.disclaimer().forEach(e=>{this.comment(e);}),this.line();}indentBlock(e){this.indent(),e(),this.deindent();}curlyBlock(e,t,r){this.line(`${e.filter(Boolean).join(" ")} {`),this.indent(),t(),this.deindent(),this.line(`}${r?.filter(Boolean).join(" ")??""}`);}squareBlock(e,t,r){this.line(`${e.filter(Boolean).join(" ")} [`),this.indent(),t(),this.deindent(),this.line(`]${r?.filter(Boolean).join(" ")??""}`);}};var Jt={"!":"Not","<=":"LessOrEqual",">=":"GreaterOrEqual","<":"Less",">":"Greater","=":"Equal","-":"Dash","+":"Plus","*":"Asterisk","/":"Slash","%":"Percent","&":"And","|":"Or","^":"Xor","~":"Tilde","?":"Question",".":"Dot"};function Wr(n){return n.split("-").map(e=>E(e)).join("-")}function Jr(n){let e=n;for(let t in Jt)e=e.replaceAll(t,Jt[t]??"");return e}function Kr(n){let e=Number(n[0]);return Number.isInteger(e)&&!Number.isNaN(e)?`_${n}`:n}function Kt(n){let e=Wr(n);return e=Kr(e),e=Jr(e),e=E(e),e}function M(n){return E(qt(n.replaceAll(".","-")))}var Yr={boolean:"bool",instant:"string",time:"string",date:"string",dateTime:"string",decimal:"decimal",integer:"int",unsignedInt:"long",positiveInt:"long",integer64:"long",base64Binary:"string",uri:"string",url:"string",canonical:"string",oid:"string",uuid:"string",string:"string",code:"string",markdown:"string",id:"string",xhtml:"string"},Zr=["Reference","Expression"],Xr=n=>n.required?["required"]:[],Qr=n=>{let e=Qt(Xt(n.identifier));return E(e)},ei=n=>n.base?`: ${n.base.name}`:"",ti=(n,e=true)=>{if(!n)return;let t=n.split("/").pop();if(t&&(e&&t.includes("#")&&(t=t.split("#")[0]),!!t))return /^\d/.test(t)&&(t=`number_${t}`),M(t)},Xt=n=>{if(n.kind==="nested"){let e=n.url,t=ti(e,false);if(!t)return "";let[r,i]=t.split("#"),s=xe((i??"").split(".")).join("");return M([r,s].join(""))}return M(n.name)},ri=n=>Zr.includes(n),Qt=n=>ri(n)?`Resource${n}`:n,we=class extends J{enums={};constructor(e){super({tabSize:4,withDebugComment:false,commentLinePrefix:"//",...e});}async generate(e){let t=e.collectComplexTypes(),r=e.collectResources(),i=Array.from(new Set(r.map(s=>M(s.identifier.package))));this.generateAllFiles(t,r,i),this.copyStaticFiles();}generateAllFiles(e,t,r){this.generateUsingFile(r),this.generateBaseTypes(e),this.generateResources(t),this.generateEnumFiles(r),this.generateResourceDictionaries(t,r),this.generateHelperFile();}generateType(e,t){let r=Qr(e),i=ei(e);this.curlyBlock(["public","class",r,i],()=>{this.generateFields(e,t),this.generateNestedTypes(e,t),this.line(),this.includeHelperMethods();}),this.line();}generateFields(e,t){if(!e.fields)return;let r=Object.entries(e.fields).sort(([i],[s])=>i.localeCompare(s));for(let[i,s]of r)this.generateField(i,s,t);}generateNestedTypes(e,t){if(!(!("nested"in e)||!e.nested)){this.line();for(let r of e.nested)this.generateType(r,t);}}generateField(e,t,r){try{if(q(t))return;let i=this.buildFieldDeclaration(e,t,r);this.line(...i);}catch(i){this.logger()?.error(`Error processing field ${e}: ${i.message}`);}}buildFieldDeclaration(e,t,r){let i=this.determineFieldType(e,t,r),s=Xr(t),o=G(e);return ["public",...s,i,o,"{ get; set; }"].filter(Boolean)}determineFieldType(e,t,r){let i=this.getBaseTypeName(t);"enum"in t&&t.enum&&(i=this.registerAndGetEnumType(e,t,r)),i=Qt(i);let s="",o=t.required?"":"?",a=t.array?"[]":"";return `${s}${i}${a}${o}`}getBaseTypeName(e){if("type"in e){let t=e.type.name.toString();return e.type.kind==="nested"?t=Xt(e.type):e.type.kind==="primitive-type"&&(t=Yr[e.type.name]??"string"),t}return ""}registerAndGetEnumType(e,t,r){let s=`${M(t.binding?.name??e)}Enum`;return this.enums[r]||(this.enums[r]={}),t.enum&&(this.enums[r][s]=t.enum),s}includeHelperMethods(){this.line("public override string ToString() => "),this.line("    JsonSerializer.Serialize(this, Helper.JsonSerializerOptions);"),this.line();}generateUsingFile(e){this.cd("/",async()=>{this.cat("Usings.cs",()=>{this.generateDisclaimer(),this.generateGlobalUsings(e);});});}generateGlobalUsings(e){let t=["CSharpSDK","System.Text.Json","System.Text.Json.Serialization",this.opts.targetNamespace,...e.map(r=>`${this.opts.targetNamespace}.${r}`)];for(let r of t)this.lineSM("global","using",r);}generateBaseTypes(e){this.cd("/",async()=>{this.cat("base.cs",()=>{this.generateDisclaimer(),this.line(),this.lineSM("namespace",this.opts.targetNamespace);for(let t of e){let r=M(t.identifier.package);this.generateType(t,r);}});});}generateResources(e){for(let t of e)this.generateResourceFile(t);}generateResourceFile(e){let t=M(e.identifier.package);this.cd(`/${t}`,async()=>{this.cat(`${e.identifier.name}.cs`,()=>{this.generateDisclaimer(),this.line(),this.lineSM("namespace",`${this.opts.targetNamespace}.${t}`),this.line(),this.generateType(e,t);});});}generateEnumFiles(e){for(let t of e)this.generatePackageEnums(t);}generatePackageEnums(e){let t=this.enums[e];!t||Object.keys(t).length===0||this.cd(`/${e}`,async()=>{this.cat(`${e}Enums.cs`,()=>{this.generateDisclaimer(),this.generateEnumFileContent(e,t);});});}generateEnumFileContent(e,t){this.lineSM("using","System.ComponentModel"),this.line(),this.lineSM(`namespace ${this.opts.targetNamespace}.${e}`);for(let[r,i]of Object.entries(t))this.generateEnum(r,i);}generateEnum(e,t){this.curlyBlock(["public","enum",e],()=>{for(let r of t)this.line(`[Description("${r}")]`),this.line(`${Kt(r)},`);}),this.line();}generateResourceDictionaries(e,t){this.cd("/",async()=>{for(let r of t){let i=e.filter(s=>M(s.identifier.package)===r);if(i.length===0)return;this.cat(`${r}ResourceDictionary.cs`,()=>{this.generateDisclaimer(),this.line(),this.lineSM(`namespace ${this.opts.targetNamespace}`),this.generateResourceDictionaryClass(r,i);});}});}generateResourceDictionaryClass(e,t){this.curlyBlock(["public","static","class","ResourceDictionary"],()=>{this.curlyBlock(["public static readonly Dictionary<Type, string> Map = new()"],()=>{for(let r of t){let i=r.identifier.name;this.line(`{ typeof(${e}.${i}), "${i}" },`);}}),this.lineSM();});}copyStaticFiles(){if(!this.opts.staticSourceDir)return;let e=R__default.resolve(this.opts.staticSourceDir);F__default.cpSync(e,this.opts.outputDir,{recursive:true});}generateHelperFile(){let e="src/api/writer-generator/csharp/Helper.cs",t=R__default.join(this.opts.outputDir,"Helper.cs");F__default.copyFileSync(e,t);}};var at=n=>{let e={};for(let t of n){let r=t.identifier.package;e[r]||(e[r]=[]),e[r].push(t);}for(let[t,r]of Object.entries(e)){let i={};for(let o of r)i[JSON.stringify(o.identifier)]=o;let s=Object.values(i);s.sort((o,a)=>o.identifier.name.localeCompare(a.identifier.name)),e[t]=s;}return e},ii=(n,e,t)=>{if(n=structuredClone(n),kt(n)||Ft(n)||Z(n))return n;for(let r of e.ignoreFields??[]){if(n.fields&&!n.fields[r])throw new Error(`Field ${r} not found`);n.fields&&delete n.fields[r];}return n.dependencies=tt(n.identifier,n.base,n.fields,n.nested),n},rr=(n,e,t)=>{let r=[];for(let[o,a]of Object.entries(e))for(let[c,l]of Object.entries(a)){let p=n.resolveByUrl(o,c);if(!p)throw new Error(`Schema not found for ${o} ${c}`);let d=ii(p,l);r.push(d);}let i=(o,a)=>{if(o.length===0)return Object.values(a);for(let l of o)a[JSON.stringify(l.identifier)]=l;let c=[];for(let l of o)if(z(l)){if(!l.dependencies)continue;if(l.dependencies.forEach(p=>{let d=n.resolve(p);if(!d)throw new Error(`Schema not found for ${p}`);let m=JSON.stringify(d.identifier);a[m]||c.push(d);}),l.nested)for(let p of l.nested){if(N(p.identifier))continue;let d=JSON.stringify(p.identifier);a[d]||c.push(p);}}return i(c,a)},s=i(r,{});return ct(s,t)},ni=n=>{let e=n.filter(P),t=[];for(let s of e)s.base&&t.push({parent:s.base,child:s.identifier});let r=[...t],i=s=>{let o=t.filter(c=>c.parent.name===s.name).map(c=>c.child),a=[];for(let c of o)a.push(...i(c));return [...o,...a]};for(let s of t){let o=i(s.child);for(let a of o)t.some(c=>c.parent.name===s.parent.name&&c.child.name===a.name)||r.push({parent:s.parent,child:a});}return r},ct=(n,e)=>{let t={},r=u=>{let f=u.identifier.url,y=u.identifier.package;if(t[f]||(t[f]={}),t[f][u.identifier.package]&&y!=="shared"){let T=JSON.stringify(u.identifier,void 0,2),v=JSON.stringify(t[f][y]?.identifier,void 0,2);if(T!==v)throw new Error(`Duplicate schema: ${T} and ${v}`);return}t[f][y]=u;};for(let u of n)r(u);let i=ni(n),s=u=>t[u.url]?.[u.package],o=(u,f)=>t[f]?.[u],a=u=>i.filter(f=>f.parent.name===u.name).map(f=>f.child),c=u=>{let f=[],y=u;for(;y;){f.push(y);let T=y.base;if(T===void 0)break;let v=s(T);if(!v){e?.warn(`Failed to resolve base type: ${f.map(w=>`${w.identifier.url} (${w.identifier.kind})`).join(", ")}`);return}y=v;}return f},l=u=>{let f=c(u);if(f===void 0)throw new Error(`Failed to resolve base type: ${u.identifier.url} (${u.identifier.kind})`);return f},p=u=>{let f=l(u).find(y=>y.identifier.kind!=="profile");if(!f)throw new Error(`No non-constraint schema found in hierarchy for: ${u.identifier.name}`);return f};return {_schemaIndex:t,_relations:i,collectComplexTypes:()=>n.filter(wt),collectResources:()=>n.filter(P),collectLogicalModels:()=>n.filter(Ct),collectProfiles:()=>n.filter(de),resolve:s,resolveByUrl:o,resourceChildren:a,tryHierarchy:c,hierarchy:l,findLastSpecialization:p,findLastSpecializationByIdentifier:u=>{let f=s(u);return f?p(f).identifier:u},flatProfile:u=>{let f=l(u),y=f.filter(k=>k.identifier.kind==="profile"),T=f.find(k=>k.identifier.kind!=="profile");if(!T)throw new Error(`No non-constraint schema found in hierarchy for ${u.identifier.name}`);let v={};for(let k of y.slice().reverse()){let ae=k;if(ae.fields)for(let[ce,vt]of Object.entries(ae.fields))v[ce]?v[ce]={...v[ce],...vt}:v[ce]={...vt};}let w={};for(let k of y.flatMap(ae=>ae.dependencies??[]))w[k.url]=k;let Y=Object.values(w);return {...u,base:T.identifier,fields:v,dependencies:Y}},isWithMetaField:u=>{let f=c(u);return f?f.filter(z).some(y=>y.fields?.meta!==void 0):false},exportTree:async u=>{let f={};for(let[T,v]of Object.entries(at(n))){f[T]={"primitive-type":{},"complex-type":{},resource:{},"value-set":{},nested:{},binding:{},profile:{},logical:{}};for(let w of v){w.identifier;f[T][w.identifier.kind][w.identifier.url]={};}}let y=u.endsWith(".yaml")?tr.stringify(f):JSON.stringify(f,void 0,2);await L.mkdir(R.dirname(u),{recursive:true}),await L.writeFile(u,y);}}};ne();var Re=class{constructor(e){this.options=e;}handleError(e,t){e instanceof $?this.handleGeneratorError(e,t):this.handleUnknownError(e,t);}handleBatchErrors(e){let t=e.filter(i=>i instanceof $),r=e.filter(i=>!(i instanceof $));t.length>0&&this.reportBatchErrors(t),r.forEach(i=>{this.handleUnknownError(i);});}handleGeneratorError(e,t){switch(this.options.outputFormat){case "json":this.reportErrorAsJson(e);break;case "structured":this.reportErrorStructured(e);break;default:this.reportErrorToConsole(e);}}handleUnknownError(e,t){this.options.logger.error("Unexpected error occurred:",e),this.options.verbose&&(this.options.logger.error(`
 \u{1F6A8} Unexpected Error Details:`),this.options.logger.error(`   Type: ${e.constructor.name}`),this.options.logger.error(`   Message: ${e.message}`),e.stack&&this.options.logger.error(`   Stack: ${e.stack}`),t?.schema&&this.options.logger.error(`   Schema: ${t.schema.identifier.name}`),t?.filename&&this.options.logger.error(`   File: ${t.filename}`)),this.options.logger.error(`
 \u{1F4A1} General troubleshooting suggestions:`),this.options.logger.error("   \u2022 Run with --verbose flag for more details"),this.options.logger.error("   \u2022 Check your input files for corruption"),this.options.logger.error("   \u2022 Update to the latest version of atomic-codegen"),this.options.logger.error("   \u2022 Report this issue at: https://github.com/atomic-ehr/codegen/issues");}reportErrorToConsole(e){if("getFormattedMessage"in e)this.options.logger.error(e.getFormattedMessage());else {this.options.logger.error(`
 \u274C ${e.constructor.name}: ${e.message}`);let t=e.getSuggestions();t.length>0&&(this.options.logger.error(`
@@ -30,18 +30,18 @@ import Ei from'yargs';import {hideBin}from'yargs/helpers';import'perf_hooks';imp
 
 `)),i?`${r}
 
-${i}`:r}filterAndSortSchemas(e){return this.collectedValueSets=this.collectValueSets(e),e.filter(t=>!this.shouldSkipSchema(t))}async validateContent(e,t){let r=/export\s+(interface|class|type|enum)\s+\w+/.test(e),i=e.includes("{")&&e.includes("}");if(!r)throw new Error(`Generated content for ${t.schema.identifier.name} does not contain valid export statements`);if(!i)throw new Error(`Generated content for ${t.schema.identifier.name} has invalid syntax (missing braces)`)}async transformSchemas(e){let t=[];for(let r of e){let i=await this.transformSchema(r);i&&t.push(i);}return t}async transformSchema(e){if(this.shouldSkipSchema(e))return;let t={schema:e,typeMapper:this.typeMapper,filename:this.getFilenameForSchema(e),language:"TypeScript",timestamp:new Date().toISOString()},r=await this.generateSchemaContent(e,t);if(!r.trim())return;let i=this.extractImportsFromContent(r,e),s=this.extractExportsFromContent(r,e),o=this.getFilenameForSchema(e);return {content:r,imports:i,exports:Array.from(s),filename:o}}shouldGenerateValueSet(e){if(!Z(e)||!e.enum||!Array.isArray(e.enum)||e.enum.length===0)return  false;switch(this.options.valueSetMode||"required-only"){case "all":return  true;case "required-only":return e.strength==="required";case "custom":return (this.options.valueSetStrengths||["required"]).includes(e.strength);default:return e.strength==="required"}}collectValueSets(e){let t=new Map;for(let r of e)if(this.shouldGenerateValueSet(r)&&Z(r)){let i=this.typeMapper.formatTypeName(r.identifier.name);t.set(i,r);}return t}shouldUseValueSetType(e){if(!e||!this.tsOptions.generateValueSets)return  false;let t=this.typeMapper.formatTypeName(e.name);return this.collectedValueSets.has(t)}getValueSetTypeName(e){return this.typeMapper.formatTypeName(e.name)}shouldUseInlineEnum(e){return !e||this.tsOptions.generateValueSets?false:e.enum&&Array.isArray(e.enum)&&e.enum.length>0}generateInlineEnumType(e){return !e.enum||!Array.isArray(e.enum)?"string":e.enum.map(r=>`'${r}'`).join(" | ")}shouldSkipSchema(e){if(e.identifier.kind==="value-set"||e.identifier.kind==="binding"||e.identifier.kind==="primitive-type")return  true;if(!this.tsOptions.includeExtensions){let t=e.identifier.url;if(t?.includes("StructureDefinition/")){let r=t.split("StructureDefinition/")[1];if(r){let i=r.includes("-"),s=e.identifier.kind==="profile";if(i&&s)return  true}}}return  false}getFilenameForSchema(e){return `${this.typeMapper.formatFileName(e.identifier.name)}${this.getFileExtension()}`}extractImportsFromContent(e,t){let r=new Map,i=/import\s+(?:type\s+)?{\s*([^}]+)\s*}\s+from\s+['"]([^'"]+)['"];?/g,s;for(;(s=i.exec(e))!==null;){let o=s[1],a=s[2];if(!o||!a)continue;let c=o.split(",").map(l=>l.trim());for(let l of c)r.set(l,a);}return r}extractExportsFromContent(e,t){let r=new Set,i=/export\s+(?:interface|class|enum|type)\s+([A-Za-z_$][A-Za-z0-9_$]*)/g,s;for(;(s=i.exec(e))!==null;)s[1]&&r.add(s[1]);return r.add(this.typeMapper.formatTypeName(t.identifier.name)),r}generateReferenceInterface(e){let t=[],r=new Set;if("fields"in e&&e.fields)for(let[,i]of Object.entries(e.fields))this.collectFieldImports(i).forEach(o=>r.add(o));if(t.push("import type { ResourceType } from './utilities.js';"),r.size>0){let i=Array.from(r).sort();for(let s of i)t.push(`import type { ${s} } from './${s}.js';`);}if(t.push(""),this.tsOptions.includeDocuments&&e.description&&(t.push("/**"),t.push(` * ${e.description}`),e.identifier.url&&t.push(` * @see ${e.identifier.url}`),e.identifier.package&&t.push(` * @package ${e.identifier.package}`),t.push(" * @template T - The resource type being referenced"),t.push(" */")),t.push("export interface Reference<T extends ResourceType = ResourceType> {"),"fields"in e&&e.fields)for(let[i,s]of Object.entries(e.fields))if(i==="type")t.push("  type?: T;");else {let o=this.generateFieldLines(i,s);for(let a of o)a&&t.push(`  ${a}`);}return t.push("}"),t.join(`
+${i}`:r}filterAndSortSchemas(e){return this.collectedValueSets=this.collectValueSets(e),e.filter(t=>!this.shouldSkipSchema(t))}async validateContent(e,t){let r=/export\s+(interface|class|type|enum)\s+\w+/.test(e),i=e.includes("{")&&e.includes("}");if(!r)throw new Error(`Generated content for ${t.schema.identifier.name} does not contain valid export statements`);if(!i)throw new Error(`Generated content for ${t.schema.identifier.name} has invalid syntax (missing braces)`)}async transformSchemas(e){let t=[];for(let r of e){let i=await this.transformSchema(r);i&&t.push(i);}return t}async transformSchema(e){if(this.shouldSkipSchema(e))return;let t={schema:e,typeMapper:this.typeMapper,filename:this.getFilenameForSchema(e),language:"TypeScript",timestamp:new Date().toISOString()},r=await this.generateSchemaContent(e,t);if(!r.trim())return;let i=this.extractImportsFromContent(r,e),s=this.extractExportsFromContent(r,e),o=this.getFilenameForSchema(e);return {content:r,imports:i,exports:Array.from(s),filename:o}}shouldGenerateValueSet(e){if(!Z(e)||!e.enum||!Array.isArray(e.enum)||e.enum.length===0)return  false;switch(this.options.valueSetMode||"required-only"){case "all":return  true;case "required-only":return e.strength==="required";case "custom":return (this.options.valueSetStrengths||["required"]).includes(e.strength);default:return e.strength==="required"}}collectValueSets(e){let t=new Map;for(let r of e)if(this.shouldGenerateValueSet(r)&&Z(r)){let i=this.typeMapper.formatTypeName(r.identifier.name);t.set(i,r);}return t}shouldUseValueSetType(e){if(!e||!this.tsOptions.generateValueSets)return  false;let t=this.typeMapper.formatTypeName(e.name);return this.collectedValueSets.has(t)}getValueSetTypeName(e){return this.typeMapper.formatTypeName(e.name)}shouldUseInlineEnum(e){return !e||this.tsOptions.generateValueSets?false:e.enum&&Array.isArray(e.enum)&&e.enum.length>0}generateInlineEnumType(e){return !e.enum||!Array.isArray(e.enum)?"string":e.enum.map(r=>`'${r}'`).join(" | ")}shouldSkipSchema(e){if(e.identifier.kind==="value-set"||e.identifier.kind==="binding"||e.identifier.kind==="primitive-type")return  true;if(!this.tsOptions.includeExtensions){let t=e.identifier.url;if(t?.includes("StructureDefinition/")){let r=t.split("StructureDefinition/")[1];if(r){let i=r.includes("-"),s=e.identifier.kind==="profile";if(i&&s)return  true}}}return  false}getFilenameForSchema(e){return `${this.typeMapper.formatFileName(e.identifier.name)}${this.getFileExtension()}`}extractImportsFromContent(e,t){let r=new Map,i=/import\s+(?:type\s+)?{\s*([^}]+)\s*}\s+from\s+['"]([^'"]+)['"];?/g,s;for(;(s=i.exec(e))!==null;){let o=s[1],a=s[2];if(!o||!a)continue;let c=o.split(",").map(l=>l.trim());for(let l of c)r.set(l,a);}return r}extractExportsFromContent(e,t){let r=new Set,i=/export\s+(?:interface|class|enum|type)\s+([A-Za-z_$][A-Za-z0-9_$]*)/g,s;for(;(s=i.exec(e))!==null;)s[1]&&r.add(s[1]);return r.add(this.typeMapper.formatTypeName(t.identifier.name)),r}generateReferenceInterface(e){let t=[],r=new Set;if("fields"in e&&e.fields)for(let[,i]of Object.entries(e.fields))this.collectFieldImports(i).forEach(o=>{r.add(o);});if(t.push("import type { ResourceType } from './utilities.js';"),r.size>0){let i=Array.from(r).sort();for(let s of i)t.push(`import type { ${s} } from './${s}.js';`);}if(t.push(""),this.tsOptions.includeDocuments&&e.description&&(t.push("/**"),t.push(` * ${e.description}`),e.identifier.url&&t.push(` * @see ${e.identifier.url}`),e.identifier.package&&t.push(` * @package ${e.identifier.package}`),t.push(" * @template T - The resource type being referenced"),t.push(" */")),t.push("export interface Reference<T extends ResourceType = ResourceType> {"),"fields"in e&&e.fields)for(let[i,s]of Object.entries(e.fields))if(i==="type")t.push("  type?: T;");else {let o=this.generateFieldLines(i,s);for(let a of o)a&&t.push(`  ${a}`);}return t.push("}"),t.join(`
 `)}generateTypeScriptInterface(e){let t=[],r=this.typeMapper.formatTypeName(e.identifier.name),i=new Set,s=new Set;if("fields"in e&&e.fields)for(let[,o]of Object.entries(e.fields)){let a=this.collectFieldImports(o);for(let c of a)this.collectedValueSets.has(c)?s.add(c):i.add(c);}if("nested"in e&&e.nested&&Array.isArray(e.nested)){for(let o of e.nested)if(o.fields)for(let[,a]of Object.entries(o.fields)){let c=this.collectFieldImports(a);for(let l of c)this.collectedValueSets.has(l)?s.add(l):i.add(l);}}if(i.size>0){let o=Array.from(i).sort();for(let a of o)t.push(`import type { ${a} } from './${a}.js';`);}if(s.size>0){let a=Array.from(s).sort().join(", ");t.push(`import type { ${a} } from './valuesets/index.js';`);}if((i.size>0||s.size>0)&&t.push(""),this.tsOptions.includeDocuments&&e.description&&(t.push("/**"),t.push(` * ${e.description}`),e.identifier.url&&t.push(` * @see ${e.identifier.url}`),e.identifier.package&&t.push(` * @package ${e.identifier.package}`),t.push(" */")),t.push(`export interface ${r} {`),e.identifier.kind==="resource"&&t.push(`  resourceType: '${r}';`),"fields"in e&&e.fields)for(let[o,a]of Object.entries(e.fields)){let c=this.generateFieldLines(o,a);for(let l of c)l&&t.push(`  ${l}`);}return t.push("}"),t.join(`
 `)}collectFieldImports(e){let t=[];if("choices"in e&&e.choices&&Array.isArray(e.choices))return t;if(e.binding&&this.shouldUseValueSetType(e.binding)){let r=this.getValueSetTypeName(e.binding);return t.push(r),t}if("type"in e&&e.type){if(e.type.kind==="nested")return t;let r=this.typeMapper.mapType(e.type);!r.isPrimitive&&r.name!=="any"&&(["string","number","boolean","Date","object","unknown","any"].includes(r.name)||t.push(r.name));}return [...new Set(t)]}extractReferenceTypes(e){let t=[];if(!Array.isArray(e))return t;for(let r of e)if(!(!r||typeof r!="object")&&r.kind==="resource"&&r.name){let i=this.typeMapper.formatTypeName(r.name);t.push(i);}return [...new Set(t)]}generateNestedTypeInterface(e,t){let r=[],i=this.typeMapper.formatTypeName(`${e}${this.capitalizeFirst(t.identifier.name)}`);if(this.tsOptions.includeDocuments&&t.description&&(r.push("/**"),r.push(` * ${t.description}`),t.identifier.url&&r.push(` * @see ${t.identifier.url}`),r.push(" */")),r.push(`export interface ${i} {`),t.fields)for(let[s,o]of Object.entries(t.fields)){let a=this.generateFieldLines(s,o);for(let c of a)c&&r.push(`  ${c}`);}return r.push("}"),r.join(`
-`)}capitalizeFirst(e){return e.charAt(0).toUpperCase()+e.slice(1)}generateFieldLines(e,t){if("choices"in t&&t.choices&&Array.isArray(t.choices))return [];let r=this.generateFieldLine(e,t);return r?[r]:[]}generateFieldLine(e,t){let r="any",i=false,s=false;if("type"in t&&t.type){if(t.binding&&this.shouldUseValueSetType(t.binding))r=this.getValueSetTypeName(t.binding);else if(t.binding&&this.shouldUseInlineEnum(t))r=this.generateInlineEnumType(t);else if(r=this.typeMapper.mapType(t.type).name,t.type.kind==="nested"){let l=t.type.url?.split("#")||[];if(l.length===2){let p=l[0].split("/").pop()||"",d=t.type.name;r=this.typeMapper.formatTypeName(`${p}${this.capitalizeFirst(d)}`);}else r=this.typeMapper.formatTypeName(t.type.name);}else if(r==="Reference"&&t.reference&&Array.isArray(t.reference)){let l=this.extractReferenceTypes(t.reference);l.length>0&&(l.forEach(d=>this.resourceTypes.add(d)),r=`Reference<${l.map(d=>`'${d}'`).join(" | ")}>`);}}return "required"in t&&(i=t.required),"array"in t&&(s=t.array),`${e}${i?"":"?"}: ${r}${s?"[]":""};`}extractExports(e){let t=[],r=/export\s*\{\s*([^}]+)\s*\}/g,i;for(;(i=r.exec(e))!==null;)if(i[1]){let o=i[1].split(",").map(a=>a.trim()).filter(Boolean);t.push(...o);}let s=[/export\s+interface\s+(\w+)/g,/export\s+type\s+(\w+)/g,/export\s+class\s+(\w+)/g,/export\s+enum\s+(\w+)/g,/export\s+const\s+(\w+)/g,/export\s+function\s+(\w+)/g];for(let o of s){let a;for(;(a=o.exec(e))!==null;)a[1]&&t.push(a[1]);}return [...new Set(t)]}setOutputDir(e){this.options.outputDir=e;}setOptions(e){this.options={...this.options,...e};}getOptions(){return {...this.options}}async generate(e){return await this.fileManager.cleanDirectory(),this.logger.debug("Cleaned output directory before generation"),super.generate(e)}async runPostGenerationHooks(){await super.runPostGenerationHooks(),await this.generateValueSetFiles(),await this.generateUtilitiesFile(),await this.generateMainIndexFile();}async generateUtilitiesFile(){if(this.resourceTypes.size===0){this.logger.warn("No resource types found, skipping utilities.ts generation");return}let e=[];e.push("/**"),e.push(" * FHIR Resource Type Utilities"),e.push(" * This file contains utility types for FHIR resources."),e.push(" * "),e.push(" * @generated This file is auto-generated. Do not edit manually."),e.push(" */"),e.push("");let t=Array.from(this.resourceTypes).sort();e.push("/**"),e.push(" * Union of all FHIR resource types in this package"),e.push(" */"),e.push("export type ResourceType =");for(let i=0;i<t.length;i++){let o=i===t.length-1?";":"";e.push(`  | '${t[i]}'${o}`);}e.push(""),e.push("/**"),e.push(" * Helper type for creating typed References"),e.push(" * @example Reference<'Patient' | 'Practitioner'> - Reference that can point to Patient or Practitioner"),e.push(" */"),e.push("export type TypedReference<T extends ResourceType> = {"),e.push("  reference?: string;"),e.push("  type?: T;"),e.push("  identifier?: any; // Simplified for utility"),e.push("  display?: string;"),e.push("};");let r=e.join(`
+`)}capitalizeFirst(e){return e.charAt(0).toUpperCase()+e.slice(1)}generateFieldLines(e,t){if("choices"in t&&t.choices&&Array.isArray(t.choices))return [];let r=this.generateFieldLine(e,t);return r?[r]:[]}generateFieldLine(e,t){let r="any",i=false,s=false;if("type"in t&&t.type){if(t.binding&&this.shouldUseValueSetType(t.binding))r=this.getValueSetTypeName(t.binding);else if(t.binding&&this.shouldUseInlineEnum(t))r=this.generateInlineEnumType(t);else if(r=this.typeMapper.mapType(t.type).name,t.type.kind==="nested"){let l=t.type.url?.split("#")||[];if(l.length===2){let p=l[0].split("/").pop()||"",d=t.type.name;r=this.typeMapper.formatTypeName(`${p}${this.capitalizeFirst(d)}`);}else r=this.typeMapper.formatTypeName(t.type.name);}else if(r==="Reference"&&t.reference&&Array.isArray(t.reference)){let l=this.extractReferenceTypes(t.reference);l.length>0&&(l.forEach(d=>{this.resourceTypes.add(d);}),r=`Reference<${l.map(d=>`'${d}'`).join(" | ")}>`);}}return "required"in t&&(i=t.required),"array"in t&&(s=t.array),`${e}${i?"":"?"}: ${r}${s?"[]":""};`}extractExports(e){let t=[],r=/export\s*\{\s*([^}]+)\s*\}/g,i;for(;(i=r.exec(e))!==null;)if(i[1]){let o=i[1].split(",").map(a=>a.trim()).filter(Boolean);t.push(...o);}let s=[/export\s+interface\s+(\w+)/g,/export\s+type\s+(\w+)/g,/export\s+class\s+(\w+)/g,/export\s+enum\s+(\w+)/g,/export\s+const\s+(\w+)/g,/export\s+function\s+(\w+)/g];for(let o of s){let a;for(;(a=o.exec(e))!==null;)a[1]&&t.push(a[1]);}return [...new Set(t)]}setOutputDir(e){this.options.outputDir=e;}setOptions(e){this.options={...this.options,...e};}getOptions(){return {...this.options}}async generate(e){return await this.fileManager.cleanDirectory(),this.logger.debug("Cleaned output directory before generation"),super.generate(e)}async runPostGenerationHooks(){await super.runPostGenerationHooks(),await this.generateValueSetFiles(),await this.generateUtilitiesFile(),await this.generateMainIndexFile();}async generateUtilitiesFile(){if(this.resourceTypes.size===0){this.logger.warn("No resource types found, skipping utilities.ts generation");return}let e=[];e.push("/**"),e.push(" * FHIR Resource Type Utilities"),e.push(" * This file contains utility types for FHIR resources."),e.push(" * "),e.push(" * @generated This file is auto-generated. Do not edit manually."),e.push(" */"),e.push("");let t=Array.from(this.resourceTypes).sort();e.push("/**"),e.push(" * Union of all FHIR resource types in this package"),e.push(" */"),e.push("export type ResourceType =");for(let i=0;i<t.length;i++){let o=i===t.length-1?";":"";e.push(`  | '${t[i]}'${o}`);}e.push(""),e.push("/**"),e.push(" * Helper type for creating typed References"),e.push(" * @example Reference<'Patient' | 'Practitioner'> - Reference that can point to Patient or Practitioner"),e.push(" */"),e.push("export type TypedReference<T extends ResourceType> = {"),e.push("  reference?: string;"),e.push("  type?: T;"),e.push("  identifier?: any; // Simplified for utility"),e.push("  display?: string;"),e.push("};");let r=e.join(`
 `);await this.fileManager.writeFile("utilities.ts",r),this.logger.info(`Generated utilities.ts with ${this.resourceTypes.size} resource types`);}generateValueSetFile(e){let t=this.typeMapper.formatTypeName(e.identifier.name),r=e.enum?.map(s=>`  '${s}'`).join(`,
 `)||"",i=[];return this.options.includeDocuments&&(i.push("/**"),i.push(` * ${e.identifier.name} value set`),e.description&&i.push(` * ${e.description}`),e.valueset?.url&&i.push(` * @see ${e.valueset.url}`),e.identifier.package&&i.push(` * @package ${e.identifier.package}`),i.push(" * @generated This file is auto-generated. Do not edit manually."),i.push(" */"),i.push("")),i.push(`export const ${t}Values = [`),r&&i.push(r),i.push("] as const;"),i.push(""),i.push(`export type ${t} = typeof ${t}Values[number];`),this.tsOptions.includeValueSetHelpers&&(i.push(""),i.push(`export const isValid${t} = (value: string): value is ${t} =>`),i.push(`  ${t}Values.includes(value as ${t});`)),i.join(`
 `)}async generateValueSetFiles(){if(!(!this.tsOptions.generateValueSets||this.collectedValueSets.size===0)){for(let[e,t]of this.collectedValueSets){let r=this.generateValueSetFile(t),i=`valuesets/${e}.ts`;await this.fileManager.writeFile(i,r),this.logger.info(`Generated value set: ${i}`);}await this.generateValueSetIndexFile();}}async generateValueSetIndexFile(){let e=[];this.tsOptions.includeDocuments&&(e.push("/**"),e.push(" * FHIR Value Sets"),e.push(" * This file re-exports all generated value sets."),e.push(" * "),e.push(" * @generated This file is auto-generated. Do not edit manually."),e.push(" */"),e.push(""));let t=Array.from(this.collectedValueSets.keys()).sort();for(let i of t)e.push(`export * from './${i}.js';`);let r=e.join(`
 `);await this.fileManager.writeFile("valuesets/index.ts",r),this.logger.info(`Generated valuesets/index.ts with ${this.collectedValueSets.size} value sets`);}async generateMainIndexFile(){if(!this.options.generateIndex)return;let e=[];this.tsOptions.includeDocuments&&(e.push("/**"),e.push(" * FHIR R4 TypeScript Types"),e.push(" * Generated from FHIR StructureDefinitions"),e.push(" * "),e.push(" * @generated This file is auto-generated. Do not edit manually."),e.push(" */"),e.push("")),e.push('export * from "./utilities";'),this.tsOptions.generateValueSets&&this.collectedValueSets.size>0&&(e.push(""),e.push("// Value Sets"),e.push('export * from "./valuesets/index";'));let t=e.join(`
-`);await this.fileManager.writeFile("index.ts",t),this.logger.info(`Generated index.ts with type exports${this.tsOptions.generateValueSets&&this.collectedValueSets.size>0?" and value sets":""}`);}};var gi={boolean:"boolean",instant:"string",time:"string",date:"string",dateTime:"string",decimal:"number",integer:"number",unsignedInt:"number",positiveInt:"number",integer64:"number",base64Binary:"string",uri:"string",url:"string",canonical:"string",oid:"string",uuid:"string",string:"string",code:"string",markdown:"string",id:"string",xhtml:"string"},gr=n=>{let e=gi[n];if(e===void 0)throw new Error(`Unknown primitive type ${n}`);return e},di=n=>re(n),fr=n=>n.kind==="profile"?`${x(n)}_profile`:G(n.name),fi=n=>`${fr(n)}.ts`,ft=(n,e=true)=>{if(!n)return;let t=ge(n,e);if(t)return ht(t)},x=n=>{if(n.kind==="nested"){let e=n.url,t=ft(e,false);if(!t)return "";let[r,i]=t.split("#"),s=xe((i??"").split(".")).join("");return ht([r,s].join(""))}return ht(n.name)},hr=new Set(["class","function","return","if","for","while","const","let","var","import","export","interface"]),K=n=>hr.has(n)?`"${n}"`:n.includes(" ")||n.includes("-")?`"${n}"`:n,ht=n=>(hr.has(n)&&(n=`${n}_`),n.replace(/[- ]/g,"_")),H=(n,e)=>e.startsWith('"')?`${n}[${e}]`:`${n}.${e}`,dr=n=>`(${n.map(e=>`"${e}"`).join(" | ")})`,Oe=class extends J{tsImportType(e,...t){this.lineSM(`import type { ${t.join(", ")} } from "${e}"`);}generateFhirPackageIndexFile(e){this.cat("index.ts",()=>{let t=e.flatMap(r=>[{identifier:r.identifier,tsPackageName:fr(r.identifier),resourceName:x(r.identifier),nestedTypes:P(r)&&r.nested?r.nested.map(i=>x(i.identifier)):[],helpers:P(r)?[`is${x(r.identifier)}`]:[]}]).sort((r,i)=>r.resourceName.localeCompare(i.resourceName));t=Array.from(new Map(t.map(r=>[r.resourceName.toLowerCase(),r])).values()).sort((r,i)=>r.resourceName.localeCompare(i.resourceName));for(let r of t)this.debugComment(r.identifier),this.lineSM(`export type { ${[r.resourceName,...r.nestedTypes].join(", ")} } from "./${r.tsPackageName}"`),r.helpers.length>0&&this.lineSM(`export { ${r.helpers.join(", ")} } from "./${r.tsPackageName}"`);});}generateDependenciesImports(e){if(e.dependencies){let t=[],r=[];for(let i of e.dependencies)["complex-type","resource","logical"].includes(i.kind)?t.push({tsPackage:`../${re(i.package)}/${G(i.name)}`,name:E(i.name),dep:i}):N(i)?t.push({tsPackage:`../${re(i.package)}/${G(ft(i.url)??"")}`,name:x(i),dep:i}):r.push(i);t.sort((i,s)=>i.name.localeCompare(s.name));for(let i of t)this.debugComment(i.dep),this.tsImportType(i.tsPackage,i.name);for(let i of r)this.debugComment("skip:",i);this.line();}}generateComplexTypeReexports(e){let t=e.dependencies?.filter(r=>["complex-type"].includes(r.kind)).map(r=>({tsPackage:`../${re(r.package)}/${G(r.name)}`,name:E(r.name)}));if(t&&t.length>0){for(let r of t)this.lineSM(`export type { ${r.name} } from "${r.tsPackage}"`);this.line();}}addFieldExtension(e,t){if(t.type.kind==="primitive-type"){let r=K(`_${e}`);this.lineSM(`${r}?: Element`);}}generateType(e,t){let r;t.identifier.name==="Reference"?r="Reference<T extends string = string>":(t.identifier.kind,r=x(t.identifier));let i;if(t.base&&(i=`extends ${ft(t.base.url)}`),this.debugComment(t.identifier),!t.fields&&!i&&!P(t)){this.lineSM(`export type ${r} = object`);return}this.curlyBlock(["export","interface",r,i],()=>{if(P(t)){let o=[t.identifier];o.push(...e.resourceChildren(t.identifier)),this.lineSM(`resourceType: ${o.sort((a,c)=>a.name.localeCompare(c.name)).map(a=>`"${a.name}"`).join(" | ")}`),this.line();}if(!t.fields)return;let s=Object.entries(t.fields).sort((o,a)=>o[0].localeCompare(a[0]));for(let[o,a]of s){if(q(a))continue;this.debugComment(o,":",a);let c=K(o),l;a.enum?l=dr(a.enum):t.identifier.name==="Reference"&&c==="reference"?l="`${T}/${string}`":a.reference&&a.reference.length>0?l=`Reference<${a.reference.map(g=>`"${g.name}"`).join(" | ")}>`:Je(a.type)?l=gr(a.type.name):N(a.type)?l=x(a.type):l=a.type.name;let p=a.required?"":"?",d=a.array?"[]":"";this.lineSM(`${c}${p}: ${l}${d}`),["resource","complex-type"].includes(t.identifier.kind)&&this.addFieldExtension(o,a);}});}generateResourceTypePredicate(e){if(!P(e))return;let t=x(e.identifier);this.curlyBlock(["export","const",`is${t}`,"=",`(resource: unknown): resource is ${t}`,"=>"],()=>{this.lineSM(`return resource !== null && typeof resource === "object" && (resource as {resourceType: string}).resourceType === "${e.identifier.name}"`);});}generateNestedTypes(e,t){if(t.nested)for(let r of t.nested)this.generateType(e,r),this.line();}generateProfileType(e,t){this.debugComment("flatProfile",t);let r=x(t.identifier);this.debugComment("identifier",t.identifier),this.debugComment("base",t.base),this.curlyBlock(["export","interface",r],()=>{this.lineSM(`__profileUrl: "${t.identifier.url}"`),this.line();for(let[i,s]of Object.entries(t.fields??{})){if(q(s))continue;this.debugComment(i,s);let o=K(i),a;if(s.enum)a=dr(s.enum);else if(s.reference&&s.reference.length>0){let c=e.findLastSpecialization(t);if(!z(c))throw new Error(`Invalid specialization for ${t.identifier}`);let l=c.fields?.[i];if(l===void 0||q(l)||l.reference===void 0)throw new Error(`Invalid field declaration for ${i}`);let p=l.reference.map(m=>m.name),d=s.reference.map(m=>{let g=e.findLastSpecializationByIdentifier(m);return g.name!==m.name?`"${g.name}" /*${m.name}*/`:`'${m.name}'`}).join(" | ");p.length===1&&p[0]==="Resource"&&d!=='"Resource"'?a=`Reference<"Resource" /* ${d} */ >`:a=`Reference<${d}>`;}else if(N(s.type))a=x(s.type);else if(Je(s.type))a=gr(s.type.name);else {if(s.type===void 0)throw new Error(`Undefined type for '${i}' field at ${Wt(t)}`);a=s.type.name;}this.lineSM(`${o}${s.required?"":"?"}: ${a}${s.array?"[]":""}`);}}),this.line();}generateAttachProfile(e){let t=x(e.base),r=x(e.identifier),i=Object.entries(e.fields||{}).filter(([s,o])=>o&&X(o)&&o.type!==void 0).map(([s])=>K(s));this.curlyBlock([`export const attach_${r}_to_${t} =`,`(resource: ${t}, profile: ${r}): ${t}`,"=>"],()=>{this.curlyBlock(["return"],()=>{this.line("...resource,"),this.curlyBlock(["meta:"],()=>{this.line(`profile: ['${e.identifier.url}']`);},[","]),i.forEach(s=>{this.line(`${s}: ${H("profile",s)},`);});});}),this.line();}generateExtractProfile(e,t){let r=x(t.base),i=x(t.identifier),s=Object.entries(t.fields||{}).filter(([c,l])=>X(l)&&l.type!==void 0).map(([c])=>c),o=e.findLastSpecialization(t);if(!z(o))throw new Error(`Specialization not found for ${t.identifier.url}`);let a={};this.curlyBlock([`export const extract_${i}_from_${r} =`,`(resource: ${r}): ${i}`,"=>"],()=>{s.forEach(c=>{let l=K(c),p=t.fields?.[c],d=o.fields?.[c];if(!X(p)||!X(d))return;p.required&&!d.required&&this.curlyBlock([`if (${H("resource",l)} === undefined)`],()=>this.lineSM(`throw new Error("'${l}' is required for ${t.identifier.url}")`));let m=p?.reference?.map(h=>h.name),g=d?.reference?.map(h=>h.name);if(m&&g&&m.length!==g.length){let h=`reference_is_valid_${l}`;this.curlyBlock(["const",h,"=","(ref?: Reference)","=>"],()=>{this.line("return !ref"),this.indentBlock(()=>{g.forEach(f=>{this.line(`|| ref.reference?.startsWith('${f}/')`);}),this.line(";");});});let u=p?.required?"":`!${H("resource",l)} || `;p.array?u+=`${H("resource",l)}.every( (ref) => ${h}(ref) )`:u+=`!${h}(${H("resource",l)})`,this.curlyBlock(["if (",u,")"],()=>{this.lineSM(`throw new Error("'${c}' has different references in profile and specialization")`);}),this.line(),a[c]=true;}}),this.curlyBlock(["return"],()=>{this.line(`__profileUrl: '${t.identifier.url}',`),s.forEach(c=>{let l=K(c);a[c]?this.line(`${l}:`,`${H("resource",l)} as ${i}['${l}'],`):this.line(`${l}:`,`${H("resource",l)},`);});});});}generateResourceModule(e,t){this.cat(`${fi(t.identifier)}`,()=>{if(this.generateDisclaimer(),["complex-type","resource","logical"].includes(t.identifier.kind))this.generateDependenciesImports(t),this.generateComplexTypeReexports(t),this.generateNestedTypes(e,t),this.comment("CanonicalURL:",t.identifier.url),this.generateType(e,t),this.generateResourceTypePredicate(t);else if(de(t)){let r=e.flatProfile(t);this.generateDependenciesImports(r),this.comment("CanonicalURL:",t.identifier.url),this.generateProfileType(e,r),this.generateAttachProfile(r),this.generateExtractProfile(e,r);}else throw new Error(`Profile generation not implemented for kind: ${t.identifier.kind}`)});}async generate(e){let t=[...e.collectComplexTypes(),...e.collectResources(),...this.opts.generateProfile?e.collectProfiles().filter(i=>e.isWithMetaField(i)):[]],r=at(t);this.cd("/",()=>{for(let[i,s]of Object.entries(r)){let o=di(i);this.cd(o,()=>{for(let a of s)this.generateResourceModule(e,a);this.generateFhirPackageIndexFile(s);});}});}};var mr=n=>{let e=()=>n.writtenFiles().map(t=>({path:R.normalize(R.join(n.opts.outputDir,t)),filename:t.replace(/^.*[\\/]/,""),content:"",exports:[],size:0,timestamp:new Date}));return {generate:async({index:t})=>(n.generate(t),e()),setOutputDir:t=>n.opts.outputDir=t,build:async t=>e()}},yr=n=>{let e=n.replace(/[^a-zA-Z0-9\-_.@#()]/g,"");return e.length===0?"unknown":e},yi=async(n,e)=>{e.info("Cleaning outputs...");try{e.info(`Clean ${n.outputDir}`),F.rmSync(n.outputDir,{recursive:!0,force:!0}),n.typeSchemaOutputDir&&(e.info(`Clean ${n.typeSchemaOutputDir}`),F.rmSync(n.typeSchemaOutputDir,{recursive:!0,force:!0})),n.exportTypeTree&&(e.info(`Clean ${n.exportTypeTree}`),F.rmSync(n.exportTypeTree,{recursive:!0,force:!0}));}catch(t){e.warn(`Error cleaning output directory: ${t instanceof Error?t.message:String(t)}`);}},Si=async(n,e,t)=>{await L.mkdir(e,{recursive:true}),t.info(`Writing TypeSchema files to ${e}/...`);let r={};for(let i of n){let s={name:i.identifier.package,version:i.identifier.version},o=yr(S(s)),a=yr(`${i.identifier.name}(${ge(i.identifier.url)})`),c=JSON.stringify(i,null,2),l=R.join(e,o,a);r[l]||(r[l]=[]),r[l]?.some(p=>p===c)||r[l].push(c);}for(let[i,s]of Object.entries(r))await Promise.all(s.map(async(o,a)=>{let c;a===0?c=`${i}.typeschema.json`:c=`${i}-${a}.typeschema.json`,await L.mkdir(R.dirname(c),{recursive:true}),await L.writeFile(c,o);}));},bi=async(n,e,t)=>{t.info(`Writing TypeSchema files to: ${e}`),await L.mkdir(R.dirname(e),{recursive:true}),t.info(`Writing TypeSchemas to one file ${e}...`);for(let r of n){let i=JSON.stringify(r,null,2);await L.appendFile(e,`${i}
-`);}},vi=async(n,e,t)=>{if(e.typeSchemaOutputDir)try{R.extname(e.typeSchemaOutputDir)===".ndjson"?await bi(n,e.typeSchemaOutputDir,t):await Si(n,e.typeSchemaOutputDir,t),t.info("Writing TypeSchema - DONE");}catch(r){if(t.error("Failed to write TypeSchema output",r instanceof Error?r:new Error(String(r))),e.throwException)throw r}},oe=class{schemas=[];options;generators=new Map;cache;pendingOperations=[];typeSchemaGenerator;logger;packages=[];progressCallback;typeSchemaConfig;constructor(e={}){this.options={outputDir:e.outputDir||"./generated",verbose:e.verbose??false,overwrite:e.overwrite??true,cache:e.cache??true,cleanOutput:e.cleanOutput??true,typeSchemaConfig:e.typeSchemaConfig,manager:e.manager||null,throwException:e.throwException||false,typeSchemaOutputDir:e.typeSchemaOutputDir,exportTypeTree:e.exportTypeTree,treeShake:e.treeShake},this.typeSchemaConfig=e.typeSchemaConfig,this.logger=e.logger||I({verbose:this.options.verbose,prefix:"API"}),this.options.cache&&(this.cache=new O(this.typeSchemaConfig));}fromPackage(e,t){let r=qe({name:e,version:t||"latest"});return this.packages.push(r),this}fromPackageRef(e){return this.packages.push(e),this}fromFiles(...e){this.logger.debug(`Loading from ${e.length} TypeSchema files`);let t=this.loadFromFiles(e);return this.pendingOperations.push(t),this}fromSchemas(e){return this.logger.debug(`Adding ${e.length} TypeSchemas to generation`),this.schemas=[...this.schemas,...e],this}typescriptDepricated(e={}){let t=`${this.options.outputDir}/types`,r=new se({outputDir:t,moduleFormat:e.moduleFormat||"esm",generateIndex:e.generateIndex??true,includeDocuments:e.includeDocuments??true,namingConvention:e.namingConvention||"PascalCase",includeExtensions:e.includeExtensions??false,includeProfiles:e.includeProfiles??false,generateValueSets:e.generateValueSets??false,includeValueSetHelpers:e.includeValueSetHelpers??false,valueSetStrengths:e.valueSetStrengths??["required"],logger:this.logger.child("TS"),valueSetMode:e.valueSetMode??"required-only",valueSetDirectory:e.valueSetDirectory??"valuesets",verbose:this.options.verbose,validate:true,overwrite:this.options.overwrite});return this.generators.set("typescript",r),this.logger.debug(`Configured TypeScript generator (${e.moduleFormat||"esm"})`),this}typescript(e){let t={outputDir:R.join(this.options.outputDir,"/types"),tabSize:4,withDebugComment:false,commentLinePrefix:"//",generateProfile:true,exportTypeTree:this.options.exportTypeTree},r={logger:this.logger,...t,...e},i=mr(new Oe(r));return this.generators.set("typescript",i),this.logger.debug(`Configured TypeScript generator (${JSON.stringify(r,void 0,2)})`),this}csharp(e,t){let r=mr(new we({outputDir:R.join(this.options.outputDir,"/types"),staticSourceDir:t??void 0,targetNamespace:e,logger:new _({prefix:"C#",timestamp:true,verbose:true,suppressLoggingLevel:[]})}));return this.generators.set("C#",r),this.logger.debug("Configured C# generator"),this}onProgress(e){return this.progressCallback=e,this}outputTo(e){this.logger.debug(`Setting output directory: ${e}`),this.options.outputDir=e;for(let t of this.generators.values())t.setOutputDir&&t.setOutputDir(e);return this}verbose(e=true){return this.options.verbose=e,this.logger?.configure({verbose:e}),this}throwException(e=true){return this.options.throwException=e,this}cleanOutput(e=true){return this.options.cleanOutput=e,this}writeTypeTree(e){return this.options.exportTypeTree=e,this}treeShake(e){return this.options.treeShake=e,this}writeTypeSchemas(e){return this.options.typeSchemaOutputDir=e,this}async generate(){let e=performance.now(),t={success:false,outputDir:this.options.outputDir,filesGenerated:[],errors:[],warnings:[],duration:0};this.logger.debug(`Starting generation with ${this.generators.size} generators`);try{this.options.cleanOutput&&yi(this.options,this.logger),this.logger.info("Initialize Canonical Manager");let r=CanonicalManager({packages:this.packages,workingDir:".codegen-cache/canonical-manager-cache"}),i=await r.init(),s=Object.values(i),o=await ee(r,{logger:this.logger,focusedPackages:s}),a=await _t(o,this.logger);await vi(a,this.options,this.logger);let c=ct(a,this.logger);this.options.treeShake&&(c=rr(c,this.options.treeShake,this.logger)),this.options.exportTypeTree&&await c.exportTree(this.options.exportTypeTree),this.logger.debug(`Executing ${this.generators.size} generators`),await this.executeGenerators(t,{schemas:a,index:c}),this.logger.info("Generation completed successfully"),t.success=t.errors.length===0,this.logger.debug(`Generation completed: ${t.filesGenerated.length} files`);}catch(r){if(this.logger.error("Code generation failed",r instanceof Error?r:new Error(String(r))),t.errors.push(r instanceof Error?r.message:String(r)),this.options.throwException)throw r}return {...t,success:t.errors.length===0,duration:performance.now()-e}}async build(){let e={};for(let[t,r]of this.generators.entries())r.build&&(e[t]=await r.build(this.schemas));return e}reset(){return this.schemas=[],this.generators.clear(),this.progressCallback=void 0,this}getSchemas(){return [...this.schemas]}getGenerators(){return Array.from(this.generators.keys())}async loadFromFiles(e){this.typeSchemaGenerator||(this.typeSchemaGenerator=new D({verbose:this.options.verbose,logger:this.logger.child("Schema"),treeshake:this.typeSchemaConfig?.treeshake},this.typeSchemaConfig));let r=await new W({format:"auto"}).parseFromFiles(e);this.schemas=[...this.schemas,...r],this.cache&&this.cache.setMany(r);}async executeGenerators(e,t){for(let[r,i]of this.generators.entries()){this.logger.info(`Generating ${r}...`);try{let s=await i.generate(t);e.filesGenerated.push(...s.map(o=>o.path||o.filename)),this.logger.info(`Generating ${r} finished successfully`);}catch(s){if(e.errors.push(`${r} generator failed: ${s instanceof Error?s.message:String(s)}`),this.options.throwException)throw s}}}};var mt={outputDir:"./generated",verbose:false,overwrite:true,validate:true,cache:true,cleanOutput:true,typescript:{moduleFormat:"esm",generateIndex:true,includeDocuments:false,namingConvention:"PascalCase",strictMode:true,includeProfiles:true,includeExtensions:false,includeCodeSystems:false,includeOperations:false,generateValueSets:false,valueSetDirectory:"valuesets",valueSetMode:"required-only",valueSetStrengths:["required"],includeValueSetHelpers:false,fhirVersion:"R4",resourceTypes:[],maxDepth:10,profileOptions:{generateKind:"interface",includeConstraints:true,includeDocumentation:true,strictMode:false,subfolder:"profiles"},generateBuilders:false,builderOptions:{includeValidation:true,includeFactoryMethods:true,includeInterfaces:true,generateNestedBuilders:true,includeHelperMethods:true,supportPartialBuild:true,includeJSDoc:true,generateFactories:true,includeTypeGuards:true,handleChoiceTypes:true,generateArrayHelpers:true},validatorOptions:{includeCardinality:true,includeTypes:true,includeConstraints:true,includeInvariants:false,validateRequired:true,allowAdditional:false,strictValidation:false,collectMetrics:false,generateAssertions:true,generatePartialValidators:true,optimizePerformance:true,includeJSDoc:true,generateCompositeValidators:true},guardOptions:{includeRuntimeValidation:true,includeErrorMessages:true,treeShakeable:true,targetTSVersion:"5.0",strictGuards:false,includeNullChecks:true,verbose:false}},typeSchema:{enablePersistence:true,cacheDir:".typeschema-cache",maxAge:1440*60*1e3,validateCached:true,forceRegenerate:false,shareCache:true,cacheKeyPrefix:"",treeshake:[],singleFile:false,profiles:{autoDetect:true}},packages:[],files:[],$schema:""},Be=["atomic-codegen.config.ts","atomic-codegen.config","atomic-codegen.config.json",".atomic-codegenrc","atomic-codegen.json",".atomic-codegen.json","codegen.config.json","codegen.json"],yt=class{validate(e){let t={valid:true,errors:[],warnings:[]};if(!e||typeof e!="object")return t.valid=false,t.errors.push({path:"root",message:"Configuration must be an object",value:e}),t;let r=e;r.outputDir!==void 0&&typeof r.outputDir!="string"&&t.errors.push({path:"outputDir",message:"outputDir must be a string",value:r.outputDir});let i=["verbose","overwrite","validate","cache"];for(let s of i)r[s]!==void 0&&typeof r[s]!="boolean"&&t.errors.push({path:s,message:`${s} must be a boolean`,value:r[s]});if(r.typescript!==void 0){let s=this.validateTypeScriptConfig(r.typescript);t.errors.push(...s);}if(r.typeSchema!==void 0){let s=this.validateTypeSchemaConfig(r.typeSchema);t.errors.push(...s);}return r.packages!==void 0&&(Array.isArray(r.packages)?r.packages.forEach((s,o)=>{typeof s!="string"&&t.errors.push({path:`packages[${o}]`,message:"package name must be a string",value:s});}):t.errors.push({path:"packages",message:"packages must be an array",value:r.packages})),r.files!==void 0&&(Array.isArray(r.files)?r.files.forEach((s,o)=>{typeof s!="string"&&t.errors.push({path:`files[${o}]`,message:"file path must be a string",value:s});}):t.errors.push({path:"files",message:"files must be an array",value:r.files})),t.valid=t.errors.length===0,t.valid&&(t.config=r),t}validateTypeScriptConfig(e){let t=[];if(typeof e!="object"||e===null)return t.push({path:"typescript",message:"typescript config must be an object",value:e}),t;let r=e;r.moduleFormat!==void 0&&(["esm","cjs"].includes(r.moduleFormat)||t.push({path:"typescript.moduleFormat",message:'moduleFormat must be "esm" or "cjs"',value:r.moduleFormat})),r.namingConvention!==void 0&&(["PascalCase","camelCase"].includes(r.namingConvention)||t.push({path:"typescript.namingConvention",message:'namingConvention must be "PascalCase" or "camelCase"',value:r.namingConvention}));let i=["generateIndex","includeDocuments","strictMode","includeProfiles","includeExtensions","includeCodeSystems","includeOperations","generateValueSets","includeValueSetHelpers"];for(let s of i)r[s]!==void 0&&typeof r[s]!="boolean"&&t.push({path:`typescript.${s}`,message:`${s} must be a boolean`,value:r[s]});if(r.validatorOptions!==void 0){let s=this.validateValidatorOptions(r.validatorOptions);t.push(...s);}if(r.guardOptions!==void 0){let s=this.validateGuardOptions(r.guardOptions);t.push(...s);}if(r.profileOptions!==void 0){let s=this.validateProfileOptions(r.profileOptions);t.push(...s);}return t}validateValidatorOptions(e){let t=[];if(typeof e!="object"||e===null)return t.push({path:"typescript.validatorOptions",message:"validatorOptions must be an object",value:e}),t;let r=e,i=["includeCardinality","includeTypes","includeConstraints","includeInvariants","validateRequired","allowAdditional","strictValidation","collectMetrics","generateAssertions","generatePartialValidators","optimizePerformance","includeJSDoc","generateCompositeValidators"];for(let s of i)r[s]!==void 0&&typeof r[s]!="boolean"&&t.push({path:`typescript.validatorOptions.${s}`,message:`${s} must be a boolean`,value:r[s]});return t}validateGuardOptions(e){let t=[];if(typeof e!="object"||e===null)return t.push({path:"typescript.guardOptions",message:"guardOptions must be an object",value:e}),t;let r=e;r.targetTSVersion!==void 0&&(["3.8","4.0","4.5","5.0"].includes(r.targetTSVersion)||t.push({path:"typescript.guardOptions.targetTSVersion",message:'targetTSVersion must be one of: "3.8", "4.0", "4.5", "5.0"',value:r.targetTSVersion}));let i=["includeRuntimeValidation","includeErrorMessages","treeShakeable","strictGuards","includeNullChecks","verbose"];for(let s of i)r[s]!==void 0&&typeof r[s]!="boolean"&&t.push({path:`typescript.guardOptions.${s}`,message:`${s} must be a boolean`,value:r[s]});return t}validateProfileOptions(e){let t=[];if(typeof e!="object"||e===null)return t.push({path:"typescript.profileOptions",message:"profileOptions must be an object",value:e}),t;let r=e;r.generateKind!==void 0&&(["interface","type","both"].includes(r.generateKind)||t.push({path:"typescript.profileOptions.generateKind",message:'generateKind must be "interface", "type", or "both"',value:r.generateKind})),r.subfolder!==void 0&&typeof r.subfolder!="string"&&t.push({path:"typescript.profileOptions.subfolder",message:"subfolder must be a string",value:r.subfolder});let i=["includeConstraints","includeDocumentation","strictMode"];for(let s of i)r[s]!==void 0&&typeof r[s]!="boolean"&&t.push({path:`typescript.profileOptions.${s}`,message:`${s} must be a boolean`,value:r[s]});return t}validateTypeSchemaConfig(e){let t=[];if(typeof e!="object"||e===null)return t.push({path:"typeSchema",message:"typeSchema config must be an object",value:e}),t;let r=e,i=["enablePersistence","validateCached","forceRegenerate","shareCache"];for(let o of i)r[o]!==void 0&&typeof r[o]!="boolean"&&t.push({path:`typeSchema.${o}`,message:`${o} must be a boolean`,value:r[o]});let s=["cacheDir","cacheKeyPrefix"];for(let o of s)r[o]!==void 0&&typeof r[o]!="string"&&t.push({path:`typeSchema.${o}`,message:`${o} must be a string`,value:r[o]});if(r.maxAge!==void 0&&(typeof r.maxAge!="number"||r.maxAge<=0)&&t.push({path:"typeSchema.maxAge",message:"maxAge must be a positive number",value:r.maxAge}),r.profiles!==void 0)if(typeof r.profiles!="object"||r.profiles===null)t.push({path:"typeSchema.profiles",message:"profiles must be an object",value:r.profiles});else {let o=r.profiles;o.autoDetect!==void 0&&typeof o.autoDetect!="boolean"&&t.push({path:"typeSchema.profiles.autoDetect",message:"autoDetect must be a boolean",value:o.autoDetect});}return t}},St=class{validator=new yt;async autoload(e=process.cwd()){let t=await this.findConfigFile(e);return t?this.loadFromFile(t):{...mt}}async loadFromFile(e){try{let t;if(e.endsWith(".ts")||e.endsWith("")){let s=await import(resolve(e));t=s.default||s;}else {let i=await readFile(e,"utf-8");t=JSON.parse(i);}let r=this.validator.validate(t);if(!r.valid){let i=r.errors.map(s=>`${s.path}: ${s.message}`).join(`
+`);await this.fileManager.writeFile("index.ts",t),this.logger.info(`Generated index.ts with type exports${this.tsOptions.generateValueSets&&this.collectedValueSets.size>0?" and value sets":""}`);}};var gi={boolean:"boolean",instant:"string",time:"string",date:"string",dateTime:"string",decimal:"number",integer:"number",unsignedInt:"number",positiveInt:"number",integer64:"number",base64Binary:"string",uri:"string",url:"string",canonical:"string",oid:"string",uuid:"string",string:"string",code:"string",markdown:"string",id:"string",xhtml:"string"},gr=n=>{let e=gi[n];if(e===void 0)throw new Error(`Unknown primitive type ${n}`);return e},di=n=>re(n),fr=n=>n.kind==="profile"?`${x(n)}_profile`:G(n.name),fi=n=>`${fr(n)}.ts`,ft=(n,e=true)=>{if(!n)return;let t=ge(n,e);if(t)return ht(t)},x=n=>{if(n.kind==="nested"){let e=n.url,t=ft(e,false);if(!t)return "";let[r,i]=t.split("#"),s=xe((i??"").split(".")).join("");return ht([r,s].join(""))}return ht(n.name)},hr=new Set(["class","function","return","if","for","while","const","let","var","import","export","interface"]),K=n=>hr.has(n)?`"${n}"`:n.includes(" ")||n.includes("-")?`"${n}"`:n,ht=n=>(hr.has(n)&&(n=`${n}_`),n.replace(/[- ]/g,"_")),H=(n,e)=>e.startsWith('"')?`${n}[${e}]`:`${n}.${e}`,dr=n=>`(${n.map(e=>`"${e}"`).join(" | ")})`,Oe=class extends J{tsImportType(e,...t){this.lineSM(`import type { ${t.join(", ")} } from "${e}"`);}generateFhirPackageIndexFile(e){this.cat("index.ts",()=>{let t=e.flatMap(r=>[{identifier:r.identifier,tsPackageName:fr(r.identifier),resourceName:x(r.identifier),nestedTypes:P(r)&&r.nested?r.nested.map(i=>x(i.identifier)):[],helpers:P(r)?[`is${x(r.identifier)}`]:[]}]).sort((r,i)=>r.resourceName.localeCompare(i.resourceName));t=Array.from(new Map(t.map(r=>[r.resourceName.toLowerCase(),r])).values()).sort((r,i)=>r.resourceName.localeCompare(i.resourceName));for(let r of t)this.debugComment(r.identifier),this.lineSM(`export type { ${[r.resourceName,...r.nestedTypes].join(", ")} } from "./${r.tsPackageName}"`),r.helpers.length>0&&this.lineSM(`export { ${r.helpers.join(", ")} } from "./${r.tsPackageName}"`);});}generateDependenciesImports(e){if(e.dependencies){let t=[],r=[];for(let i of e.dependencies)["complex-type","resource","logical"].includes(i.kind)?t.push({tsPackage:`../${re(i.package)}/${G(i.name)}`,name:E(i.name),dep:i}):N(i)?t.push({tsPackage:`../${re(i.package)}/${G(ft(i.url)??"")}`,name:x(i),dep:i}):r.push(i);t.sort((i,s)=>i.name.localeCompare(s.name));for(let i of t)this.debugComment(i.dep),this.tsImportType(i.tsPackage,i.name);for(let i of r)this.debugComment("skip:",i);this.line();}}generateComplexTypeReexports(e){let t=e.dependencies?.filter(r=>["complex-type"].includes(r.kind)).map(r=>({tsPackage:`../${re(r.package)}/${G(r.name)}`,name:E(r.name)}));if(t&&t.length>0){for(let r of t)this.lineSM(`export type { ${r.name} } from "${r.tsPackage}"`);this.line();}}addFieldExtension(e,t){if(t.type.kind==="primitive-type"){let r=K(`_${e}`);this.lineSM(`${r}?: Element`);}}generateType(e,t){let r;t.identifier.name==="Reference"?r="Reference<T extends string = string>":(t.identifier.kind,r=x(t.identifier));let i;if(t.base&&(i=`extends ${ft(t.base.url)}`),this.debugComment(t.identifier),!t.fields&&!i&&!P(t)){this.lineSM(`export type ${r} = object`);return}this.curlyBlock(["export","interface",r,i],()=>{if(P(t)){let o=[t.identifier];o.push(...e.resourceChildren(t.identifier));let a=this.opts.openResourceTypeSet&&o.length>1?" | string":"";this.lineSM(`resourceType: ${o.sort((c,l)=>c.name.localeCompare(l.name)).map(c=>`"${c.name}"`).join(" | ")}${a}`),this.line();}if(!t.fields)return;let s=Object.entries(t.fields).sort((o,a)=>o[0].localeCompare(a[0]));for(let[o,a]of s){if(q(a))continue;this.debugComment(o,":",a);let c=K(o),l;a.enum?l=dr(a.enum):t.identifier.name==="Reference"&&c==="reference"?l="`${T}/${string}`":a.reference&&a.reference.length>0?l=`Reference<${a.reference.map(g=>`"${g.name}"`).join(" | ")}>`:Je(a.type)?l=gr(a.type.name):N(a.type)?l=x(a.type):l=a.type.name;let p=a.required?"":"?",d=a.array?"[]":"";this.lineSM(`${c}${p}: ${l}${d}`),["resource","complex-type"].includes(t.identifier.kind)&&this.addFieldExtension(o,a);}});}generateResourceTypePredicate(e){if(!P(e))return;let t=x(e.identifier);this.curlyBlock(["export","const",`is${t}`,"=",`(resource: unknown): resource is ${t}`,"=>"],()=>{this.lineSM(`return resource !== null && typeof resource === "object" && (resource as {resourceType: string}).resourceType === "${e.identifier.name}"`);});}generateNestedTypes(e,t){if(t.nested)for(let r of t.nested)this.generateType(e,r),this.line();}generateProfileType(e,t){this.debugComment("flatProfile",t);let r=x(t.identifier);this.debugComment("identifier",t.identifier),this.debugComment("base",t.base),this.curlyBlock(["export","interface",r],()=>{this.lineSM(`__profileUrl: "${t.identifier.url}"`),this.line();for(let[i,s]of Object.entries(t.fields??{})){if(q(s))continue;this.debugComment(i,s);let o=K(i),a;if(s.enum)a=dr(s.enum);else if(s.reference&&s.reference.length>0){let c=e.findLastSpecialization(t);if(!z(c))throw new Error(`Invalid specialization for ${t.identifier}`);let l=c.fields?.[i];if(l===void 0||q(l)||l.reference===void 0)throw new Error(`Invalid field declaration for ${i}`);let p=l.reference.map(m=>m.name),d=s.reference.map(m=>{let g=e.findLastSpecializationByIdentifier(m);return g.name!==m.name?`"${g.name}" /*${m.name}*/`:`'${m.name}'`}).join(" | ");p.length===1&&p[0]==="Resource"&&d!=='"Resource"'?a=`Reference<"Resource" /* ${d} */ >`:a=`Reference<${d}>`;}else if(N(s.type))a=x(s.type);else if(Je(s.type))a=gr(s.type.name);else {if(s.type===void 0)throw new Error(`Undefined type for '${i}' field at ${Wt(t)}`);a=s.type.name;}this.lineSM(`${o}${s.required?"":"?"}: ${a}${s.array?"[]":""}`);}}),this.line();}generateAttachProfile(e){let t=x(e.base),r=x(e.identifier),i=Object.entries(e.fields||{}).filter(([s,o])=>o&&X(o)&&o.type!==void 0).map(([s])=>K(s));this.curlyBlock([`export const attach_${r}_to_${t} =`,`(resource: ${t}, profile: ${r}): ${t}`,"=>"],()=>{this.curlyBlock(["return"],()=>{this.line("...resource,"),this.curlyBlock(["meta:"],()=>{this.line(`profile: ['${e.identifier.url}']`);},[","]),i.forEach(s=>{this.line(`${s}: ${H("profile",s)},`);});});}),this.line();}generateExtractProfile(e,t){let r=x(t.base),i=x(t.identifier),s=Object.entries(t.fields||{}).filter(([c,l])=>X(l)&&l.type!==void 0).map(([c])=>c),o=e.findLastSpecialization(t);if(!z(o))throw new Error(`Specialization not found for ${t.identifier.url}`);let a={};this.curlyBlock([`export const extract_${i}_from_${r} =`,`(resource: ${r}): ${i}`,"=>"],()=>{s.forEach(c=>{let l=K(c),p=t.fields?.[c],d=o.fields?.[c];if(!X(p)||!X(d))return;p.required&&!d.required&&this.curlyBlock([`if (${H("resource",l)} === undefined)`],()=>this.lineSM(`throw new Error("'${l}' is required for ${t.identifier.url}")`));let m=p?.reference?.map(h=>h.name),g=d?.reference?.map(h=>h.name);if(m&&g&&m.length!==g.length){let h=`reference_is_valid_${l}`;this.curlyBlock(["const",h,"=","(ref?: Reference)","=>"],()=>{this.line("return !ref"),this.indentBlock(()=>{g.forEach(f=>{this.line(`|| ref.reference?.startsWith('${f}/')`);}),this.line(";");});});let u=p?.required?"":`!${H("resource",l)} || `;p.array?u+=`${H("resource",l)}.every( (ref) => ${h}(ref) )`:u+=`!${h}(${H("resource",l)})`,this.curlyBlock(["if (",u,")"],()=>{this.lineSM(`throw new Error("'${c}' has different references in profile and specialization")`);}),this.line(),a[c]=true;}}),this.curlyBlock(["return"],()=>{this.line(`__profileUrl: '${t.identifier.url}',`),s.forEach(c=>{let l=K(c);a[c]?this.line(`${l}:`,`${H("resource",l)} as ${i}['${l}'],`):this.line(`${l}:`,`${H("resource",l)},`);});});});}generateResourceModule(e,t){this.cat(`${fi(t.identifier)}`,()=>{if(this.generateDisclaimer(),["complex-type","resource","logical"].includes(t.identifier.kind))this.generateDependenciesImports(t),this.generateComplexTypeReexports(t),this.generateNestedTypes(e,t),this.comment("CanonicalURL:",t.identifier.url),this.generateType(e,t),this.generateResourceTypePredicate(t);else if(de(t)){let r=e.flatProfile(t);this.generateDependenciesImports(r),this.comment("CanonicalURL:",t.identifier.url),this.generateProfileType(e,r),this.generateAttachProfile(r),this.generateExtractProfile(e,r);}else throw new Error(`Profile generation not implemented for kind: ${t.identifier.kind}`)});}async generate(e){let t=[...e.collectComplexTypes(),...e.collectResources(),...this.opts.generateProfile?e.collectProfiles().filter(i=>e.isWithMetaField(i)):[]],r=at(t);this.cd("/",()=>{for(let[i,s]of Object.entries(r)){let o=di(i);this.cd(o,()=>{for(let a of s)this.generateResourceModule(e,a);this.generateFhirPackageIndexFile(s);});}});}};var mr=n=>{let e=()=>n.writtenFiles().map(t=>({path:R.normalize(R.join(n.opts.outputDir,t)),filename:t.replace(/^.*[\\/]/,""),content:"",exports:[],size:0,timestamp:new Date}));return {generate:async({index:t})=>(await n.generate(t),e()),setOutputDir:t=>n.opts.outputDir=t,build:async t=>e()}},yr=n=>{let e=n.replace(/[^a-zA-Z0-9\-_.@#()]/g,"");return e.length===0?"unknown":e},mi=async(n,e)=>{e.info("Cleaning outputs...");try{e.info(`Clean ${n.outputDir}`),F.rmSync(n.outputDir,{recursive:!0,force:!0}),n.typeSchemaOutputDir&&(e.info(`Clean ${n.typeSchemaOutputDir}`),F.rmSync(n.typeSchemaOutputDir,{recursive:!0,force:!0})),n.exportTypeTree&&(e.info(`Clean ${n.exportTypeTree}`),F.rmSync(n.exportTypeTree,{recursive:!0,force:!0}));}catch(t){e.warn(`Error cleaning output directory: ${t instanceof Error?t.message:String(t)}`);}},yi=async(n,e,t)=>{await L.mkdir(e,{recursive:true}),t.info(`Writing TypeSchema files to ${e}/...`);let r={};for(let i of n){let s={name:i.identifier.package,version:i.identifier.version},o=yr(S(s)),a=yr(`${i.identifier.name}(${ge(i.identifier.url)})`),c=JSON.stringify(i,null,2),l=R.join(e,o,a);r[l]||(r[l]=[]),r[l]?.some(p=>p===c)||r[l].push(c);}for(let[i,s]of Object.entries(r))await Promise.all(s.map(async(o,a)=>{let c;a===0?c=`${i}.typeschema.json`:c=`${i}-${a}.typeschema.json`,await L.mkdir(R.dirname(c),{recursive:true}),await L.writeFile(c,o);}));},Si=async(n,e,t)=>{t.info(`Writing TypeSchema files to: ${e}`),await L.mkdir(R.dirname(e),{recursive:true}),t.info(`Writing TypeSchemas to one file ${e}...`);for(let r of n){let i=JSON.stringify(r,null,2);await L.appendFile(e,`${i}
+`);}},bi=async(n,e,t)=>{if(e.typeSchemaOutputDir)try{R.extname(e.typeSchemaOutputDir)===".ndjson"?await Si(n,e.typeSchemaOutputDir,t):await yi(n,e.typeSchemaOutputDir,t),t.info("Writing TypeSchema - DONE");}catch(r){if(t.error("Failed to write TypeSchema output",r instanceof Error?r:new Error(String(r))),e.throwException)throw r}},oe=class{schemas=[];options;generators=new Map;cache;pendingOperations=[];typeSchemaGenerator;logger;packages=[];progressCallback;typeSchemaConfig;constructor(e={}){this.options={outputDir:e.outputDir||"./generated",verbose:e.verbose??false,overwrite:e.overwrite??true,cache:e.cache??true,cleanOutput:e.cleanOutput??true,typeSchemaConfig:e.typeSchemaConfig,manager:e.manager||null,throwException:e.throwException||false,typeSchemaOutputDir:e.typeSchemaOutputDir,exportTypeTree:e.exportTypeTree,treeShake:e.treeShake},this.typeSchemaConfig=e.typeSchemaConfig,this.logger=e.logger||I({verbose:this.options.verbose,prefix:"API"}),this.options.cache&&(this.cache=new O(this.typeSchemaConfig));}fromPackage(e,t){let r=qe({name:e,version:t||"latest"});return this.packages.push(r),this}fromPackageRef(e){return this.packages.push(e),this}fromFiles(...e){this.logger.debug(`Loading from ${e.length} TypeSchema files`);let t=this.loadFromFiles(e);return this.pendingOperations.push(t),this}fromSchemas(e){return this.logger.debug(`Adding ${e.length} TypeSchemas to generation`),this.schemas=[...this.schemas,...e],this}typescriptDepricated(e={}){let t=`${this.options.outputDir}/types`,r=new se({outputDir:t,moduleFormat:e.moduleFormat||"esm",generateIndex:e.generateIndex??true,includeDocuments:e.includeDocuments??true,namingConvention:e.namingConvention||"PascalCase",includeExtensions:e.includeExtensions??false,includeProfiles:e.includeProfiles??false,generateValueSets:e.generateValueSets??false,includeValueSetHelpers:e.includeValueSetHelpers??false,valueSetStrengths:e.valueSetStrengths??["required"],logger:this.logger.child("TS"),valueSetMode:e.valueSetMode??"required-only",valueSetDirectory:e.valueSetDirectory??"valuesets",verbose:this.options.verbose,validate:true,overwrite:this.options.overwrite});return this.generators.set("typescript",r),this.logger.debug(`Configured TypeScript generator (${e.moduleFormat||"esm"})`),this}typescript(e){let i={...{...{logger:this.logger,outputDir:R.join(this.options.outputDir,"/types"),tabSize:4,withDebugComment:false,commentLinePrefix:"//",generateProfile:true},openResourceTypeSet:false},...Object.fromEntries(Object.entries(e).filter(([o,a])=>a!==void 0))},s=mr(new Oe(i));return this.generators.set("typescript",s),this.logger.debug(`Configured TypeScript generator (${JSON.stringify(i,void 0,2)})`),this}csharp(e,t){let r=mr(new we({outputDir:R.join(this.options.outputDir,"/types"),staticSourceDir:t??void 0,targetNamespace:e,logger:new _({prefix:"C#",timestamp:true,verbose:true,suppressLoggingLevel:[]})}));return this.generators.set("C#",r),this.logger.debug("Configured C# generator"),this}onProgress(e){return this.progressCallback=e,this}outputTo(e){this.logger.debug(`Setting output directory: ${e}`),this.options.outputDir=e;for(let t of this.generators.values())t.setOutputDir&&t.setOutputDir(e);return this}verbose(e=true){return this.options.verbose=e,this.logger?.configure({verbose:e}),this}throwException(e=true){return this.options.throwException=e,this}cleanOutput(e=true){return this.options.cleanOutput=e,this}writeTypeTree(e){return this.options.exportTypeTree=e,this}treeShake(e){return this.options.treeShake=e,this}writeTypeSchemas(e){return this.options.typeSchemaOutputDir=e,this}async generate(){let e=performance.now(),t={success:false,outputDir:this.options.outputDir,filesGenerated:[],errors:[],warnings:[],duration:0};this.logger.debug(`Starting generation with ${this.generators.size} generators`);try{this.options.cleanOutput&&mi(this.options,this.logger),this.logger.info("Initialize Canonical Manager");let r=CanonicalManager({packages:this.packages,workingDir:".codegen-cache/canonical-manager-cache"}),i=await r.init(),s=Object.values(i),o=await ee(r,{logger:this.logger,focusedPackages:s}),a=await _t(o,this.logger);await bi(a,this.options,this.logger);let c=ct(a,this.logger);this.options.treeShake&&(c=rr(c,this.options.treeShake,this.logger)),this.options.exportTypeTree&&await c.exportTree(this.options.exportTypeTree),this.logger.debug(`Executing ${this.generators.size} generators`),await this.executeGenerators(t,{schemas:a,index:c}),this.logger.info("Generation completed successfully"),t.success=t.errors.length===0,this.logger.debug(`Generation completed: ${t.filesGenerated.length} files`);}catch(r){if(this.logger.error("Code generation failed",r instanceof Error?r:new Error(String(r))),t.errors.push(r instanceof Error?r.message:String(r)),this.options.throwException)throw r}return {...t,success:t.errors.length===0,duration:performance.now()-e}}async build(){let e={};for(let[t,r]of this.generators.entries())r.build&&(e[t]=await r.build(this.schemas));return e}reset(){return this.schemas=[],this.generators.clear(),this.progressCallback=void 0,this}getSchemas(){return [...this.schemas]}getGenerators(){return Array.from(this.generators.keys())}async loadFromFiles(e){this.typeSchemaGenerator||(this.typeSchemaGenerator=new D({verbose:this.options.verbose,logger:this.logger.child("Schema"),treeshake:this.typeSchemaConfig?.treeshake},this.typeSchemaConfig));let r=await new W({format:"auto"}).parseFromFiles(e);this.schemas=[...this.schemas,...r],this.cache&&this.cache.setMany(r);}async executeGenerators(e,t){for(let[r,i]of this.generators.entries()){this.logger.info(`Generating ${r}...`);try{let s=await i.generate(t);e.filesGenerated.push(...s.map(o=>o.path||o.filename)),this.logger.info(`Generating ${r} finished successfully`);}catch(s){if(e.errors.push(`${r} generator failed: ${s instanceof Error?s.message:String(s)}`),this.options.throwException)throw s}}}};var mt={outputDir:"./generated",verbose:false,overwrite:true,validate:true,cache:true,cleanOutput:true,typescript:{moduleFormat:"esm",generateIndex:true,includeDocuments:false,namingConvention:"PascalCase",strictMode:true,includeProfiles:true,includeExtensions:false,includeCodeSystems:false,includeOperations:false,generateValueSets:false,valueSetDirectory:"valuesets",valueSetMode:"required-only",valueSetStrengths:["required"],includeValueSetHelpers:false,fhirVersion:"R4",resourceTypes:[],maxDepth:10,profileOptions:{generateKind:"interface",includeConstraints:true,includeDocumentation:true,strictMode:false,subfolder:"profiles"},generateBuilders:false,builderOptions:{includeValidation:true,includeFactoryMethods:true,includeInterfaces:true,generateNestedBuilders:true,includeHelperMethods:true,supportPartialBuild:true,includeJSDoc:true,generateFactories:true,includeTypeGuards:true,handleChoiceTypes:true,generateArrayHelpers:true},validatorOptions:{includeCardinality:true,includeTypes:true,includeConstraints:true,includeInvariants:false,validateRequired:true,allowAdditional:false,strictValidation:false,collectMetrics:false,generateAssertions:true,generatePartialValidators:true,optimizePerformance:true,includeJSDoc:true,generateCompositeValidators:true},guardOptions:{includeRuntimeValidation:true,includeErrorMessages:true,treeShakeable:true,targetTSVersion:"5.0",strictGuards:false,includeNullChecks:true,verbose:false}},typeSchema:{enablePersistence:true,cacheDir:".typeschema-cache",maxAge:1440*60*1e3,validateCached:true,forceRegenerate:false,shareCache:true,cacheKeyPrefix:"",treeshake:[],singleFile:false,profiles:{autoDetect:true}},packages:[],files:[],$schema:""},Be=["atomic-codegen.config.ts","atomic-codegen.config","atomic-codegen.config.json",".atomic-codegenrc","atomic-codegen.json",".atomic-codegen.json","codegen.config.json","codegen.json"],yt=class{validate(e){let t={valid:true,errors:[],warnings:[]};if(!e||typeof e!="object")return t.valid=false,t.errors.push({path:"root",message:"Configuration must be an object",value:e}),t;let r=e;r.outputDir!==void 0&&typeof r.outputDir!="string"&&t.errors.push({path:"outputDir",message:"outputDir must be a string",value:r.outputDir});let i=["verbose","overwrite","validate","cache"];for(let s of i)r[s]!==void 0&&typeof r[s]!="boolean"&&t.errors.push({path:s,message:`${s} must be a boolean`,value:r[s]});if(r.typescript!==void 0){let s=this.validateTypeScriptConfig(r.typescript);t.errors.push(...s);}if(r.typeSchema!==void 0){let s=this.validateTypeSchemaConfig(r.typeSchema);t.errors.push(...s);}return r.packages!==void 0&&(Array.isArray(r.packages)?r.packages.forEach((s,o)=>{typeof s!="string"&&t.errors.push({path:`packages[${o}]`,message:"package name must be a string",value:s});}):t.errors.push({path:"packages",message:"packages must be an array",value:r.packages})),r.files!==void 0&&(Array.isArray(r.files)?r.files.forEach((s,o)=>{typeof s!="string"&&t.errors.push({path:`files[${o}]`,message:"file path must be a string",value:s});}):t.errors.push({path:"files",message:"files must be an array",value:r.files})),t.valid=t.errors.length===0,t.valid&&(t.config=r),t}validateTypeScriptConfig(e){let t=[];if(typeof e!="object"||e===null)return t.push({path:"typescript",message:"typescript config must be an object",value:e}),t;let r=e;r.moduleFormat!==void 0&&(["esm","cjs"].includes(r.moduleFormat)||t.push({path:"typescript.moduleFormat",message:'moduleFormat must be "esm" or "cjs"',value:r.moduleFormat})),r.namingConvention!==void 0&&(["PascalCase","camelCase"].includes(r.namingConvention)||t.push({path:"typescript.namingConvention",message:'namingConvention must be "PascalCase" or "camelCase"',value:r.namingConvention}));let i=["generateIndex","includeDocuments","strictMode","includeProfiles","includeExtensions","includeCodeSystems","includeOperations","generateValueSets","includeValueSetHelpers"];for(let s of i)r[s]!==void 0&&typeof r[s]!="boolean"&&t.push({path:`typescript.${s}`,message:`${s} must be a boolean`,value:r[s]});if(r.validatorOptions!==void 0){let s=this.validateValidatorOptions(r.validatorOptions);t.push(...s);}if(r.guardOptions!==void 0){let s=this.validateGuardOptions(r.guardOptions);t.push(...s);}if(r.profileOptions!==void 0){let s=this.validateProfileOptions(r.profileOptions);t.push(...s);}return t}validateValidatorOptions(e){let t=[];if(typeof e!="object"||e===null)return t.push({path:"typescript.validatorOptions",message:"validatorOptions must be an object",value:e}),t;let r=e,i=["includeCardinality","includeTypes","includeConstraints","includeInvariants","validateRequired","allowAdditional","strictValidation","collectMetrics","generateAssertions","generatePartialValidators","optimizePerformance","includeJSDoc","generateCompositeValidators"];for(let s of i)r[s]!==void 0&&typeof r[s]!="boolean"&&t.push({path:`typescript.validatorOptions.${s}`,message:`${s} must be a boolean`,value:r[s]});return t}validateGuardOptions(e){let t=[];if(typeof e!="object"||e===null)return t.push({path:"typescript.guardOptions",message:"guardOptions must be an object",value:e}),t;let r=e;r.targetTSVersion!==void 0&&(["3.8","4.0","4.5","5.0"].includes(r.targetTSVersion)||t.push({path:"typescript.guardOptions.targetTSVersion",message:'targetTSVersion must be one of: "3.8", "4.0", "4.5", "5.0"',value:r.targetTSVersion}));let i=["includeRuntimeValidation","includeErrorMessages","treeShakeable","strictGuards","includeNullChecks","verbose"];for(let s of i)r[s]!==void 0&&typeof r[s]!="boolean"&&t.push({path:`typescript.guardOptions.${s}`,message:`${s} must be a boolean`,value:r[s]});return t}validateProfileOptions(e){let t=[];if(typeof e!="object"||e===null)return t.push({path:"typescript.profileOptions",message:"profileOptions must be an object",value:e}),t;let r=e;r.generateKind!==void 0&&(["interface","type","both"].includes(r.generateKind)||t.push({path:"typescript.profileOptions.generateKind",message:'generateKind must be "interface", "type", or "both"',value:r.generateKind})),r.subfolder!==void 0&&typeof r.subfolder!="string"&&t.push({path:"typescript.profileOptions.subfolder",message:"subfolder must be a string",value:r.subfolder});let i=["includeConstraints","includeDocumentation","strictMode"];for(let s of i)r[s]!==void 0&&typeof r[s]!="boolean"&&t.push({path:`typescript.profileOptions.${s}`,message:`${s} must be a boolean`,value:r[s]});return t}validateTypeSchemaConfig(e){let t=[];if(typeof e!="object"||e===null)return t.push({path:"typeSchema",message:"typeSchema config must be an object",value:e}),t;let r=e,i=["enablePersistence","validateCached","forceRegenerate","shareCache"];for(let o of i)r[o]!==void 0&&typeof r[o]!="boolean"&&t.push({path:`typeSchema.${o}`,message:`${o} must be a boolean`,value:r[o]});let s=["cacheDir","cacheKeyPrefix"];for(let o of s)r[o]!==void 0&&typeof r[o]!="string"&&t.push({path:`typeSchema.${o}`,message:`${o} must be a string`,value:r[o]});if(r.maxAge!==void 0&&(typeof r.maxAge!="number"||r.maxAge<=0)&&t.push({path:"typeSchema.maxAge",message:"maxAge must be a positive number",value:r.maxAge}),r.profiles!==void 0)if(typeof r.profiles!="object"||r.profiles===null)t.push({path:"typeSchema.profiles",message:"profiles must be an object",value:r.profiles});else {let o=r.profiles;o.autoDetect!==void 0&&typeof o.autoDetect!="boolean"&&t.push({path:"typeSchema.profiles.autoDetect",message:"autoDetect must be a boolean",value:o.autoDetect});}return t}},St=class{validator=new yt;async autoload(e=process.cwd()){let t=await this.findConfigFile(e);return t?this.loadFromFile(t):{...mt}}async loadFromFile(e){try{let t;if(e.endsWith(".ts")||e.endsWith("")){let s=await import(resolve(e));t=s.default||s;}else {let i=await readFile(e,"utf-8");t=JSON.parse(i);}let r=this.validator.validate(t);if(!r.valid){let i=r.errors.map(s=>`${s.path}: ${s.message}`).join(`
 `);throw new Error(`Configuration validation failed:
-${i}`)}return this.mergeWithDefaults(r.config)}catch(t){throw t instanceof Error?new Error(`Failed to load config from ${e}: ${t.message}`):t}}async findConfigFile(e){for(let t of Be){let r=resolve(e,t);if(existsSync(r))return r}return null}mergeWithDefaults(e){return {...mt,...e,typescript:{...mt.typescript,...e.typescript}}}},wi=new St;async function Le(n){return wi.autoload(n)}var br={command:"generate",describe:"Generate code based on configuration file settings",builder:n=>n.option("verbose",{alias:"v",type:"boolean",default:false,description:"Enable verbose output"}).example("$0 generate","Generate code using settings from config file").example("$0 generate --verbose","Generate with verbose output"),handler:async n=>{if(n._.length>1){let o=n._.slice(1).join(" ");C(`Invalid syntax: 'atomic-codegen generate ${o}'
+${i}`)}return this.mergeWithDefaults(r.config)}catch(t){throw t instanceof Error?new Error(`Failed to load config from ${e}: ${t.message}`):t}}async findConfigFile(e){for(let t of Be){let r=resolve(e,t);if(existsSync(r))return r}return null}mergeWithDefaults(e){return {...mt,...e,typescript:{...mt.typescript,...e.typescript}}}},xi=new St;async function Le(n){return xi.autoload(n)}var br={command:"generate",describe:"Generate code based on configuration file settings",builder:n=>n.option("verbose",{alias:"v",type:"boolean",default:false,description:"Enable verbose output"}).example("$0 generate","Generate code using settings from config file").example("$0 generate --verbose","Generate with verbose output"),handler:async n=>{if(n._.length>1){let o=n._.slice(1).join(" ");C(`Invalid syntax: 'atomic-codegen generate ${o}'
 
 The CLI has been simplified and no longer uses subcommands.
 
@@ -49,7 +49,7 @@ The CLI has been simplified and no longer uses subcommands.
 \u274C Old: atomic-codegen generate typescript
 
 All generation settings are now configured in your config file.
-Create an atomic-codegen.config.ts file to get started.`),process.exit(1);}let e=process.cwd(),t=await Fi(e);if(!t){let o=Be.map(a=>`  - ${a}`).join(`
+Create an atomic-codegen.config.ts file to get started.`),process.exit(1);}let e=process.cwd(),t=await Ci(e);if(!t){let o=Be.map(a=>`  - ${a}`).join(`
 `);C(`No configuration file found. Please create one of the following files in your project root:
 ${o}
 
@@ -62,13 +62,13 @@ export default defineConfig({
   typescript: {
     generateIndex: true
   }
-});`),process.exit(1);}let r=await Le(e),i=n.verbose??r.verbose??false,s=I({verbose:i,prefix:"Generate"});try{Ue("Starting generation from config"),i&&(s.info(`Config file: ${t}`),s.info(`Output directory: ${r.outputDir||"./generated"}`),s.info(`Packages: ${r.packages?.length||0}`),s.info(`Files: ${r.files?.length||0}`),s.info(`TypeScript generation: ${r.typescript?"enabled":"disabled"}`));let o=new oe({outputDir:r.outputDir||"./generated",verbose:i,overwrite:r.overwrite??!0,cache:r.cache??!0,typeSchemaConfig:r.typeSchema,logger:s});if(r.packages&&r.packages.length>0){s.info(`Loading packages from config: ${r.packages.join(", ")}`);for(let c of r.packages){let[l,p]=c.includes("@")?c.split("@"):[c,void 0];o.fromPackage(l,p);}}else if(r.files&&r.files.length>0){s.info(`Loading files from config: ${r.files.join(", ")}`);for(let c of r.files)o.fromFiles(c);}else throw new Error("No data source specified in config. Please configure 'packages' or 'files' in your config file.");if(r.typescript&&(i&&(s.info("Configuring TypeScript generation from config"),s.debug(`Module format: ${r.typescript.moduleFormat||"esm"}`),s.debug(`Generate index: ${r.typescript.generateIndex??!0}`),s.debug(`Include docs: ${r.typescript.includeDocuments??!1}`),s.debug(`Naming convention: ${r.typescript.namingConvention||"PascalCase"}`)),o.typescriptDepricated(r.typescript)),!r.typescript)throw new Error("No generators configured. Please enable 'typescript' in your config file.");i&&o.onProgress((c,l,p,d)=>{let m=Math.round(l/p*100);s.progress(`[${c}] ${m}% - ${d||"Processing..."}`);}),s.step("Executing generation...");let a=await o.generate();if(a.success){if(pe(`Generated ${a.filesGenerated.length} files in ${a.duration.toFixed(2)}ms`),s.dim(`Output directory: ${a.outputDir}`),a.warnings.length>0)for(let c of a.warnings)Ge(c);}else {C(`Generation failed with ${a.errors.length} errors`);for(let c of a.errors)s.dim(`  ${c}`);process.exit(1);}}catch(o){C("Generation failed with unexpected error",o instanceof Error?o:new Error(String(o))),process.exit(1);}}};async function Fi(n){for(let e of Be){let t=resolve(n,e);if(existsSync(t))return t}return null}var vr={command:"generate <packages..>",describe:"Generate TypeSchema files from FHIR packages",builder:{packages:{type:"string",array:true,demandOption:true,describe:"FHIR packages to process (e.g., hl7.fhir.r4.core@4.0.1)"},output:{alias:"o",type:"string",describe:"Output file or directory",default:"./schemas.ndjson"},format:{alias:"f",type:"string",choices:["ndjson","json"],default:"ndjson",describe:"Output format for TypeSchema files"},treeshake:{alias:"t",type:"string",array:true,describe:"Only generate TypeSchemas for specific ResourceTypes (treeshaking)"},singleFile:{alias:"s",type:"boolean",default:false,describe:"Generate single TypeSchema file instead of multiple files (NDJSON format)"},verbose:{alias:"v",type:"boolean",default:false,describe:"Enable verbose output"}},handler:async n=>{let e=I({verbose:n.verbose,prefix:"TypeSchema"});try{let t=await Le(process.cwd());e.step("Generating TypeSchema from FHIR packages"),e.info(`Packages: ${n.packages.join(", ")}`),e.info(`Output: ${n.output}`);let r=n.singleFile!==void 0?n.singleFile:t.typeSchema?.singleFile??!1,i=r?"ndjson":n.format;e.debug(`Format: ${i}${r&&n.format==="json"?" (forced from json due to singleFile)":""}`);let s=n.treeshake&&n.treeshake.length>0?n.treeshake:t.typeSchema?.treeshake;s&&s.length>0&&e.info(`Treeshaking enabled for ResourceTypes: ${s.join(", ")}`),r&&e.info("Single file output enabled (NDJSON format)");let o=Date.now(),a=new D({verbose:n.verbose,treeshake:s}),c=[];for(let m of n.packages){let[g,h]=m.includes("@")?m.split("@"):[m,void 0];e.progress(`Processing package: ${g}${h?`@${h}`:""}`);let u=await a.generateFromPackage(g,h,e);c.push(...u);}if(c.length===0)throw new Error("No schemas were generated from the specified packages");let l=n.output;await mkdir(dirname(l),{recursive:!0});let p;i==="json"?p=JSON.stringify(c,null,2):p=c.map(m=>JSON.stringify(m)).join(`
+});`),process.exit(1);}let r=await Le(e),i=n.verbose??r.verbose??false,s=I({verbose:i,prefix:"Generate"});try{Ue("Starting generation from config"),i&&(s.info(`Config file: ${t}`),s.info(`Output directory: ${r.outputDir||"./generated"}`),s.info(`Packages: ${r.packages?.length||0}`),s.info(`Files: ${r.files?.length||0}`),s.info(`TypeScript generation: ${r.typescript?"enabled":"disabled"}`));let o=new oe({outputDir:r.outputDir||"./generated",verbose:i,overwrite:r.overwrite??!0,cache:r.cache??!0,typeSchemaConfig:r.typeSchema,logger:s});if(r.packages&&r.packages.length>0){s.info(`Loading packages from config: ${r.packages.join(", ")}`);for(let c of r.packages){let[l,p]=c.includes("@")?c.split("@"):[c,void 0];o.fromPackage(l,p);}}else if(r.files&&r.files.length>0){s.info(`Loading files from config: ${r.files.join(", ")}`);for(let c of r.files)o.fromFiles(c);}else throw new Error("No data source specified in config. Please configure 'packages' or 'files' in your config file.");if(r.typescript&&(i&&(s.info("Configuring TypeScript generation from config"),s.debug(`Module format: ${r.typescript.moduleFormat||"esm"}`),s.debug(`Generate index: ${r.typescript.generateIndex??!0}`),s.debug(`Include docs: ${r.typescript.includeDocuments??!1}`),s.debug(`Naming convention: ${r.typescript.namingConvention||"PascalCase"}`)),o.typescriptDepricated(r.typescript)),!r.typescript)throw new Error("No generators configured. Please enable 'typescript' in your config file.");i&&o.onProgress((c,l,p,d)=>{let m=Math.round(l/p*100);s.progress(`[${c}] ${m}% - ${d||"Processing..."}`);}),s.step("Executing generation...");let a=await o.generate();if(a.success){if(pe(`Generated ${a.filesGenerated.length} files in ${a.duration.toFixed(2)}ms`),s.dim(`Output directory: ${a.outputDir}`),a.warnings.length>0)for(let c of a.warnings)Ge(c);}else {C(`Generation failed with ${a.errors.length} errors`);for(let c of a.errors)s.dim(`  ${c}`);process.exit(1);}}catch(o){C("Generation failed with unexpected error",o instanceof Error?o:new Error(String(o))),process.exit(1);}}};async function Ci(n){for(let e of Be){let t=resolve(n,e);if(existsSync(t))return t}return null}var vr={command:"generate <packages..>",describe:"Generate TypeSchema files from FHIR packages",builder:{packages:{type:"string",array:true,demandOption:true,describe:"FHIR packages to process (e.g., hl7.fhir.r4.core@4.0.1)"},output:{alias:"o",type:"string",describe:"Output file or directory",default:"./schemas.ndjson"},format:{alias:"f",type:"string",choices:["ndjson","json"],default:"ndjson",describe:"Output format for TypeSchema files"},treeshake:{alias:"t",type:"string",array:true,describe:"Only generate TypeSchemas for specific ResourceTypes (treeshaking)"},singleFile:{alias:"s",type:"boolean",default:false,describe:"Generate single TypeSchema file instead of multiple files (NDJSON format)"},verbose:{alias:"v",type:"boolean",default:false,describe:"Enable verbose output"}},handler:async n=>{let e=I({verbose:n.verbose,prefix:"TypeSchema"});try{let t=await Le(process.cwd());e.step("Generating TypeSchema from FHIR packages"),e.info(`Packages: ${n.packages.join(", ")}`),e.info(`Output: ${n.output}`);let r=n.singleFile!==void 0?n.singleFile:t.typeSchema?.singleFile??!1,i=r?"ndjson":n.format;e.debug(`Format: ${i}${r&&n.format==="json"?" (forced from json due to singleFile)":""}`);let s=n.treeshake&&n.treeshake.length>0?n.treeshake:t.typeSchema?.treeshake;s&&s.length>0&&e.info(`Treeshaking enabled for ResourceTypes: ${s.join(", ")}`),r&&e.info("Single file output enabled (NDJSON format)");let o=Date.now(),a=new D({verbose:n.verbose,treeshake:s}),c=[];for(let m of n.packages){let[g,h]=m.includes("@")?m.split("@"):[m,void 0];e.progress(`Processing package: ${g}${h?`@${h}`:""}`);let u=await a.generateFromPackage(g,h,e);c.push(...u);}if(c.length===0)throw new Error("No schemas were generated from the specified packages");let l=n.output;await mkdir(dirname(l),{recursive:!0});let p;i==="json"?p=JSON.stringify(c,null,2):p=c.map(m=>JSON.stringify(m)).join(`
 `),await writeFile(l,p,"utf-8");let d=Date.now()-o;if(ze(`Generated ${c.length} TypeSchema definitions`,d,{schemas:c.length}),e.dim(`Output: ${l}`),n.verbose){e.debug("Generated schemas:");let m=c.map(g=>`${g.identifier?.name||"Unknown"} (${g.identifier?.kind||"unknown"})`);j(m);}}catch(t){e.error("Failed to generate TypeSchema",t instanceof Error?t:new Error(String(t))),process.exit(1);}}};var Tr={command:"typeschema [subcommand]",describe:"TypeSchema operations - generate, validate and merge schemas",builder:n=>n.command(vr).help().example("$0 typeschema generate hl7.fhir.r4.core@4.0.1","Generate TypeSchema from FHIR R4 core package"),handler:n=>{if(!n.subcommand&&n._.length===1){ue("Available typeschema subcommands:"),j(["generate    Generate TypeSchema files from FHIR packages"]),console.log(`
 Use 'atomic-codegen typeschema <subcommand> --help' for more information about a subcommand.`),console.log(`
 Examples:`),j(["atomic-codegen typeschema generate hl7.fhir.r4.core@4.0.1 -o schemas.ndjson","atomic-codegen typeschema validate schemas.ndjson","atomic-codegen typeschema merge schema1.ndjson schema2.ndjson -o merged.ndjson"]);return}n.subcommand&&!["generate","validate","merge"].includes(n.subcommand)&&(C(`Unknown typeschema subcommand: ${n.subcommand}
 `),ue("Available typeschema subcommands:"),j(["generate    Generate TypeSchema files from FHIR packages","validate    Validate TypeSchema files for correctness and consistency","merge       Merge multiple TypeSchema files into a single file"]),console.log(`
-Use 'atomic-codegen typeschema <subcommand> --help' for more information about a subcommand.`),process.exit(1));}};async function Mi(n){He({verbose:n.verbose||n.debug,timestamp:n.debug});}function Ni(){return Ei(hideBin(process.argv)).scriptName("atomic-codegen").usage("$0 <command> [options]").middleware(Mi).command(Tr).command(br).option("verbose",{alias:"v",type:"boolean",description:"Enable verbose output",default:false,global:true}).option("debug",{alias:"d",type:"boolean",description:"Enable debug output with detailed logging",default:false,global:true}).option("config",{alias:"c",type:"string",description:"Path to configuration file (.atomic-codegen.json by default)",global:true}).demandCommand(0).middleware(n=>{n._.length===0&&(_e("Welcome to Atomic Codegen!"),console.log("Available commands:"),console.log("  typeschema   Generate, validate and merge TypeSchema files"),console.log("  generate     Generate code based on configuration file"),console.log(`
+Use 'atomic-codegen typeschema <subcommand> --help' for more information about a subcommand.`),process.exit(1));}};async function Pi(n){He({verbose:n.verbose||n.debug,timestamp:n.debug});}function Mi(){return Ii(hideBin(process.argv)).scriptName("atomic-codegen").usage("$0 <command> [options]").middleware(Pi).command(Tr).command(br).option("verbose",{alias:"v",type:"boolean",description:"Enable verbose output",default:false,global:true}).option("debug",{alias:"d",type:"boolean",description:"Enable debug output with detailed logging",default:false,global:true}).option("config",{alias:"c",type:"string",description:"Path to configuration file (.atomic-codegen.json by default)",global:true}).demandCommand(0).middleware(n=>{n._.length===0&&(_e("Welcome to Atomic Codegen!"),console.log("Available commands:"),console.log("  typeschema   Generate, validate and merge TypeSchema files"),console.log("  generate     Generate code based on configuration file"),console.log(`
 Use 'atomic-codegen <command> --help' for more information about a command.`),console.log(`
 Quick examples:`),console.log("  atomic-codegen typeschema generate hl7.fhir.r4.core@4.0.1 -o schemas.ndjson"),console.log("  atomic-codegen generate  # Uses atomic-codegen.config.ts"),console.log(`
 Use 'atomic-codegen --help' to see all options.`),process.exit(0));}).help().version("0.1.0").example("$0 generate","Generate code using atomic-codegen.config.ts").example("$0 generate --verbose","Generate with detailed progress output").example("$0 --config custom-config.ts generate","Use custom configuration file").example("$0 typeschema generate hl7.fhir.r4.core@4.0.1 -o schemas.ndjson","Generate TypeSchemas from FHIR package").fail((n,e,t)=>{e?C(e.message,e):C(n),C(`
-Use --help for usage information`),process.exit(1);}).wrap(Math.min(120,process.stdout.columns||80))}async function bt(){await Ni().parseAsync();}import.meta.main&&bt().catch(n=>{n("Unexpected error:",n),process.exit(1);});bt().catch(n=>{console.error("CLI Error:",n instanceof Error?n.message:n),process.exit(1);});
+Use --help for usage information`),process.exit(1);}).wrap(Math.min(120,process.stdout.columns||80))}async function bt(){await Mi().parseAsync();}import.meta.main&&bt().catch(n=>{n("Unexpected error:",n),process.exit(1);});bt().catch(n=>{console.error("CLI Error:",n instanceof Error?n.message:n),process.exit(1);});

package/dist/index.d.ts

@@ -794,6 +794,15 @@ type WriterOptions = {
     logger?: CodegenLogger;
 };
 
+type TypeScriptOptions = {
+    /** openResourceTypeSet -- for resource families (Resource, DomainResource) use open set for resourceType field.
+     *
+     * - when openResourceTypeSet is false: `type Resource = { resourceType: "Resource" | "DomainResource" | "Patient" }`
+     * - when openResourceTypeSet is true: `type Resource = { resourceType: "Resource" | "DomainResource" | "Patient" | string }`
+     */
+    openResourceTypeSet: boolean;
+} & WriterOptions;
+
 /**
  * High-Level API Builder
  *
@@ -868,7 +877,7 @@ declare class APIBuilder {
         valueSetMode?: "all" | "required-only" | "custom";
         valueSetDirectory?: string;
     }): APIBuilder;
-    typescript(opts: Partial<WriterOptions>): this;
+    typescript(userOpts: Partial<TypeScriptOptions>): this;
     csharp(namespace: string, staticSourceDir?: string | undefined): APIBuilder;
     /**
      * Set a progress callback for monitoring generation