@atomic-ehr/codegen 0.0.2-canary.20251117093451.b983ea4 → 0.0.2-canary.20251117105615.f6f8c62

package/dist/cli/index.js

@@ -38,7 +38,7 @@ ${i}`:r}filterAndSortSchemas(e){return this.collectedValueSets=this.collectValue
 `)||"",i=[];return this.options.includeDocuments&&(i.push("/**"),i.push(` * ${e.identifier.name} value set`),e.description&&i.push(` * ${e.description}`),e.valueset?.url&&i.push(` * @see ${e.valueset.url}`),e.identifier.package&&i.push(` * @package ${e.identifier.package}`),i.push(" * @generated This file is auto-generated. Do not edit manually."),i.push(" */"),i.push("")),i.push(`export const ${t}Values = [`),r&&i.push(r),i.push("] as const;"),i.push(""),i.push(`export type ${t} = typeof ${t}Values[number];`),this.tsOptions.includeValueSetHelpers&&(i.push(""),i.push(`export const isValid${t} = (value: string): value is ${t} =>`),i.push(`  ${t}Values.includes(value as ${t});`)),i.join(`
 `)}async generateValueSetFiles(){if(!(!this.tsOptions.generateValueSets||this.collectedValueSets.size===0)){for(let[e,t]of this.collectedValueSets){let r=this.generateValueSetFile(t),i=`valuesets/${e}.ts`;await this.fileManager.writeFile(i,r),this.logger.info(`Generated value set: ${i}`);}await this.generateValueSetIndexFile();}}async generateValueSetIndexFile(){let e=[];this.tsOptions.includeDocuments&&(e.push("/**"),e.push(" * FHIR Value Sets"),e.push(" * This file re-exports all generated value sets."),e.push(" * "),e.push(" * @generated This file is auto-generated. Do not edit manually."),e.push(" */"),e.push(""));let t=Array.from(this.collectedValueSets.keys()).sort();for(let i of t)e.push(`export * from './${i}.js';`);let r=e.join(`
 `);await this.fileManager.writeFile("valuesets/index.ts",r),this.logger.info(`Generated valuesets/index.ts with ${this.collectedValueSets.size} value sets`);}async generateMainIndexFile(){if(!this.options.generateIndex)return;let e=[];this.tsOptions.includeDocuments&&(e.push("/**"),e.push(" * FHIR R4 TypeScript Types"),e.push(" * Generated from FHIR StructureDefinitions"),e.push(" * "),e.push(" * @generated This file is auto-generated. Do not edit manually."),e.push(" */"),e.push("")),e.push('export * from "./utilities";'),this.tsOptions.generateValueSets&&this.collectedValueSets.size>0&&(e.push(""),e.push("// Value Sets"),e.push('export * from "./valuesets/index";'));let t=e.join(`
-`);await this.fileManager.writeFile("index.ts",t),this.logger.info(`Generated index.ts with type exports${this.tsOptions.generateValueSets&&this.collectedValueSets.size>0?" and value sets":""}`);}};var gi={boolean:"boolean",instant:"string",time:"string",date:"string",dateTime:"string",decimal:"number",integer:"number",unsignedInt:"number",positiveInt:"number",integer64:"number",base64Binary:"string",uri:"string",url:"string",canonical:"string",oid:"string",uuid:"string",string:"string",code:"string",markdown:"string",id:"string",xhtml:"string"},gr=n=>{let e=gi[n];if(e===void 0)throw new Error(`Unknown primitive type ${n}`);return e},di=n=>re(n),fr=n=>n.kind==="profile"?`${x(n)}_profile`:G(n.name),fi=n=>`${fr(n)}.ts`,ft=(n,e=true)=>{if(!n)return;let t=ge(n,e);if(t)return ht(t)},x=n=>{if(n.kind==="nested"){let e=n.url,t=ft(e,false);if(!t)return "";let[r,i]=t.split("#"),s=xe((i??"").split(".")).join("");return ht([r,s].join(""))}return ht(n.name)},hr=new Set(["class","function","return","if","for","while","const","let","var","import","export","interface"]),K=n=>hr.has(n)?`"${n}"`:n.includes(" ")||n.includes("-")?`"${n}"`:n,ht=n=>(hr.has(n)&&(n=`${n}_`),n.replace(/[- ]/g,"_")),H=(n,e)=>e.startsWith('"')?`${n}[${e}]`:`${n}.${e}`,dr=n=>`(${n.map(e=>`"${e}"`).join(" | ")})`,Oe=class extends J{tsImportType(e,...t){this.lineSM(`import type { ${t.join(", ")} } from "${e}"`);}generateFhirPackageIndexFile(e){this.cat("index.ts",()=>{let t=e.flatMap(r=>[{identifier:r.identifier,tsPackageName:fr(r.identifier),resourceName:x(r.identifier),nestedTypes:P(r)&&r.nested?r.nested.map(i=>x(i.identifier)):[],helpers:P(r)?[`is${x(r.identifier)}`]:[]}]).sort((r,i)=>r.resourceName.localeCompare(i.resourceName));t=Array.from(new Map(t.map(r=>[r.resourceName.toLowerCase(),r])).values()).sort((r,i)=>r.resourceName.localeCompare(i.resourceName));for(let r of t)this.debugComment(r.identifier),this.lineSM(`export type { ${[r.resourceName,...r.nestedTypes].join(", ")} } from "./${r.tsPackageName}"`),r.helpers.length>0&&this.lineSM(`export { ${r.helpers.join(", ")} } from "./${r.tsPackageName}"`);});}generateDependenciesImports(e){if(e.dependencies){let t=[],r=[];for(let i of e.dependencies)["complex-type","resource","logical"].includes(i.kind)?t.push({tsPackage:`../${re(i.package)}/${G(i.name)}`,name:E(i.name),dep:i}):M(i)?t.push({tsPackage:`../${re(i.package)}/${G(ft(i.url)??"")}`,name:x(i),dep:i}):r.push(i);t.sort((i,s)=>i.name.localeCompare(s.name));for(let i of t)this.debugComment(i.dep),this.tsImportType(i.tsPackage,i.name);for(let i of r)this.debugComment("skip:",i);this.line();}}generateComplexTypeReexports(e){let t=e.dependencies?.filter(r=>["complex-type"].includes(r.kind)).map(r=>({tsPackage:`../${re(r.package)}/${G(r.name)}`,name:E(r.name)}));if(t&&t.length>0){for(let r of t)this.lineSM(`export type { ${r.name} } from "${r.tsPackage}"`);this.line();}}addFieldExtension(e,t){if(t.type.kind==="primitive-type"){let r=K(`_${e}`);this.lineSM(`${r}?: Element`);}}generateType(e,t){let r;t.identifier.name==="Reference"?r="Reference<T extends string = string>":(t.identifier.kind,r=x(t.identifier));let i;if(t.base&&(i=`extends ${ft(t.base.url)}`),this.debugComment(t.identifier),!t.fields&&!i&&!P(t)){this.lineSM(`export type ${r} = object`);return}this.curlyBlock(["export","interface",r,i],()=>{if(P(t)){let o=[t.identifier];o.push(...e.resourceChildren(t.identifier)),this.lineSM(`resourceType: ${o.sort((a,c)=>a.name.localeCompare(c.name)).map(a=>`"${a.name}"`).join(" | ")}`),this.line();}if(!t.fields)return;let s=Object.entries(t.fields).sort((o,a)=>o[0].localeCompare(a[0]));for(let[o,a]of s){if(q(a))continue;this.debugComment(o,":",a);let c=K(o),l;a.enum?l=dr(a.enum):t.identifier.name==="Reference"&&c==="reference"?l="`${T}/${string}`":a.reference&&a.reference.length>0?l=`Reference<${a.reference.map(g=>`"${g.name}"`).join(" | ")}>`:Je(a.type)?l=gr(a.type.name):M(a.type)?l=x(a.type):l=a.type.name;let p=a.required?"":"?",d=a.array?"[]":"";this.lineSM(`${c}${p}: ${l}${d}`),["resource","complex-type"].includes(t.identifier.kind)&&this.addFieldExtension(o,a);}});}generateResourceTypePredicate(e){if(!P(e))return;let t=x(e.identifier);this.curlyBlock(["export","const",`is${t}`,"=",`(resource: any): resource is ${t}`,"=>"],()=>{this.lineSM(`return resource && resource.resourceType === "${e.identifier.name}"`);});}generateNestedTypes(e,t){if(t.nested)for(let r of t.nested)this.generateType(e,r),this.line();}generateProfileType(e,t){this.debugComment("flatProfile",t);let r=x(t.identifier);this.debugComment("identifier",t.identifier),this.debugComment("base",t.base),this.curlyBlock(["export","interface",r],()=>{this.lineSM(`__profileUrl: "${t.identifier.url}"`),this.line();for(let[i,s]of Object.entries(t.fields??{})){if(q(s))continue;this.debugComment(i,s);let o=K(i),a;if(s.enum)a=dr(s.enum);else if(s.reference&&s.reference.length>0){let c=e.findLastSpecialization(t);if(!z(c))throw new Error(`Invalid specialization for ${t.identifier}`);let l=c.fields?.[i];if(l===void 0||q(l)||l.reference===void 0)throw new Error(`Invalid field declaration for ${i}`);let p=l.reference.map(m=>m.name),d=s.reference.map(m=>{let g=e.findLastSpecializationByIdentifier(m);return g.name!==m.name?`"${g.name}" /*${m.name}*/`:`'${m.name}'`}).join(" | ");p.length===1&&p[0]==="Resource"&&d!=='"Resource"'?a=`Reference<"Resource" /* ${d} */ >`:a=`Reference<${d}>`;}else if(M(s.type))a=x(s.type);else if(Je(s.type))a=gr(s.type.name);else {if(s.type===void 0)throw new Error(`Undefined type for '${i}' field at ${Wt(t)}`);a=s.type.name;}this.lineSM(`${o}${s.required?"":"?"}: ${a}${s.array?"[]":""}`);}}),this.line();}generateAttachProfile(e){let t=x(e.base),r=x(e.identifier),i=Object.entries(e.fields||{}).filter(([s,o])=>o&&X(o)&&o.type!==void 0).map(([s])=>K(s));this.curlyBlock([`export const attach_${r}_to_${t} =`,`(resource: ${t}, profile: ${r}): ${t}`,"=>"],()=>{this.curlyBlock(["return"],()=>{this.line("...resource,"),this.curlyBlock(["meta:"],()=>{this.line(`profile: ['${e.identifier.url}']`);},[","]),i.forEach(s=>{this.line(`${s}: ${H("profile",s)},`);});});}),this.line();}generateExtractProfile(e,t){let r=x(t.base),i=x(t.identifier),s=Object.entries(t.fields||{}).filter(([c,l])=>X(l)&&l.type!==void 0).map(([c])=>c),o=e.findLastSpecialization(t);if(!z(o))throw new Error(`Specialization not found for ${t.identifier.url}`);let a={};this.curlyBlock([`export const extract_${i}_from_${r} =`,`(resource: ${r}): ${i}`,"=>"],()=>{s.forEach(c=>{let l=K(c),p=t.fields?.[c],d=o.fields?.[c];if(!X(p)||!X(d))return;p.required&&!d.required&&this.curlyBlock([`if (${H("resource",l)} === undefined)`],()=>this.lineSM(`throw new Error("'${l}' is required for ${t.identifier.url}")`));let m=p?.reference?.map(h=>h.name),g=d?.reference?.map(h=>h.name);if(m&&g&&m.length!==g.length){let h=`reference_is_valid_${l}`;this.curlyBlock(["const",h,"=","(ref?: Reference)","=>"],()=>{this.line("return !ref"),this.indentBlock(()=>{g.forEach(f=>{this.line(`|| ref.reference?.startsWith('${f}/')`);}),this.line(";");});});let u=p?.required?"":`!${H("resource",l)} || `;p.array?u+=`${H("resource",l)}.every( (ref) => ${h}(ref) )`:u+=`!${h}(${H("resource",l)})`,this.curlyBlock(["if (",u,")"],()=>{this.lineSM(`throw new Error("'${c}' has different references in profile and specialization")`);}),this.line(),a[c]=true;}}),this.curlyBlock(["return"],()=>{this.line(`__profileUrl: '${t.identifier.url}',`),s.forEach(c=>{let l=K(c);a[c]?this.line(`${l}:`,`${H("resource",l)} as ${i}['${l}'],`):this.line(`${l}:`,`${H("resource",l)},`);});});});}generateResourceModule(e,t){this.cat(`${fi(t.identifier)}`,()=>{if(this.generateDisclaimer(),["complex-type","resource","logical"].includes(t.identifier.kind))this.generateDependenciesImports(t),this.generateComplexTypeReexports(t),this.generateNestedTypes(e,t),this.comment("CanonicalURL:",t.identifier.url),this.generateType(e,t),this.generateResourceTypePredicate(t);else if(de(t)){let r=e.flatProfile(t);this.generateDependenciesImports(r),this.comment("CanonicalURL:",t.identifier.url),this.generateProfileType(e,r),this.generateAttachProfile(r),this.generateExtractProfile(e,r);}else throw new Error(`Profile generation not implemented for kind: ${t.identifier.kind}`)});}generate(e){let t=[...e.collectComplexTypes(),...e.collectResources(),...this.opts.generateProfile?e.collectProfiles().filter(i=>e.isWithMetaField(i)):[]],r=at(t);this.cd("/",()=>{for(let[i,s]of Object.entries(r)){let o=di(i);this.cd(o,()=>{for(let a of s)this.generateResourceModule(e,a);this.generateFhirPackageIndexFile(s);});}});}};var mr=n=>{let e=()=>n.writtenFiles().map(t=>({path:R.normalize(R.join(n.opts.outputDir,t)),filename:t.replace(/^.*[\\/]/,""),content:"",exports:[],size:0,timestamp:new Date}));return {generate:async({index:t})=>(n.generate(t),e()),setOutputDir:t=>n.opts.outputDir=t,build:async t=>e()}},yr=n=>{let e=n.replace(/[^a-zA-Z0-9\-_.@#()]/g,"");return e.length===0?"unknown":e},yi=async(n,e)=>{e.info("Cleaning outputs...");try{e.info(`Clean ${n.outputDir}`),F.rmSync(n.outputDir,{recursive:!0,force:!0}),n.typeSchemaOutputDir&&(e.info(`Clean ${n.typeSchemaOutputDir}`),F.rmSync(n.typeSchemaOutputDir,{recursive:!0,force:!0})),n.exportTypeTree&&(e.info(`Clean ${n.exportTypeTree}`),F.rmSync(n.exportTypeTree,{recursive:!0,force:!0}));}catch(t){e.warn(`Error cleaning output directory: ${t instanceof Error?t.message:String(t)}`);}},Si=async(n,e,t)=>{await L.mkdir(e,{recursive:true}),t.info(`Writing TypeSchema files to ${e}/...`);let r={};for(let i of n){let s={name:i.identifier.package,version:i.identifier.version},o=yr(S(s)),a=yr(`${i.identifier.name}(${ge(i.identifier.url)})`),c=JSON.stringify(i,null,2),l=R.join(e,o,a);r[l]||(r[l]=[]),r[l]?.some(p=>p===c)||r[l].push(c);}for(let[i,s]of Object.entries(r))await Promise.all(s.map(async(o,a)=>{let c;a===0?c=`${i}.typeschema.json`:c=`${i}-${a}.typeschema.json`,await L.mkdir(R.dirname(c),{recursive:true}),await L.writeFile(c,o);}));},bi=async(n,e,t)=>{t.info(`Writing TypeSchema files to: ${e}`),await L.mkdir(R.dirname(e),{recursive:true}),t.info(`Writing TypeSchemas to one file ${e}...`);for(let r of n){let i=JSON.stringify(r,null,2);await L.appendFile(e,`${i}
+`);await this.fileManager.writeFile("index.ts",t),this.logger.info(`Generated index.ts with type exports${this.tsOptions.generateValueSets&&this.collectedValueSets.size>0?" and value sets":""}`);}};var gi={boolean:"boolean",instant:"string",time:"string",date:"string",dateTime:"string",decimal:"number",integer:"number",unsignedInt:"number",positiveInt:"number",integer64:"number",base64Binary:"string",uri:"string",url:"string",canonical:"string",oid:"string",uuid:"string",string:"string",code:"string",markdown:"string",id:"string",xhtml:"string"},gr=n=>{let e=gi[n];if(e===void 0)throw new Error(`Unknown primitive type ${n}`);return e},di=n=>re(n),fr=n=>n.kind==="profile"?`${x(n)}_profile`:G(n.name),fi=n=>`${fr(n)}.ts`,ft=(n,e=true)=>{if(!n)return;let t=ge(n,e);if(t)return ht(t)},x=n=>{if(n.kind==="nested"){let e=n.url,t=ft(e,false);if(!t)return "";let[r,i]=t.split("#"),s=xe((i??"").split(".")).join("");return ht([r,s].join(""))}return ht(n.name)},hr=new Set(["class","function","return","if","for","while","const","let","var","import","export","interface"]),K=n=>hr.has(n)?`"${n}"`:n.includes(" ")||n.includes("-")?`"${n}"`:n,ht=n=>(hr.has(n)&&(n=`${n}_`),n.replace(/[- ]/g,"_")),H=(n,e)=>e.startsWith('"')?`${n}[${e}]`:`${n}.${e}`,dr=n=>`(${n.map(e=>`"${e}"`).join(" | ")})`,Oe=class extends J{tsImportType(e,...t){this.lineSM(`import type { ${t.join(", ")} } from "${e}"`);}generateFhirPackageIndexFile(e){this.cat("index.ts",()=>{let t=e.flatMap(r=>[{identifier:r.identifier,tsPackageName:fr(r.identifier),resourceName:x(r.identifier),nestedTypes:P(r)&&r.nested?r.nested.map(i=>x(i.identifier)):[],helpers:P(r)?[`is${x(r.identifier)}`]:[]}]).sort((r,i)=>r.resourceName.localeCompare(i.resourceName));t=Array.from(new Map(t.map(r=>[r.resourceName.toLowerCase(),r])).values()).sort((r,i)=>r.resourceName.localeCompare(i.resourceName));for(let r of t)this.debugComment(r.identifier),this.lineSM(`export type { ${[r.resourceName,...r.nestedTypes].join(", ")} } from "./${r.tsPackageName}"`),r.helpers.length>0&&this.lineSM(`export { ${r.helpers.join(", ")} } from "./${r.tsPackageName}"`);});}generateDependenciesImports(e){if(e.dependencies){let t=[],r=[];for(let i of e.dependencies)["complex-type","resource","logical"].includes(i.kind)?t.push({tsPackage:`../${re(i.package)}/${G(i.name)}`,name:E(i.name),dep:i}):M(i)?t.push({tsPackage:`../${re(i.package)}/${G(ft(i.url)??"")}`,name:x(i),dep:i}):r.push(i);t.sort((i,s)=>i.name.localeCompare(s.name));for(let i of t)this.debugComment(i.dep),this.tsImportType(i.tsPackage,i.name);for(let i of r)this.debugComment("skip:",i);this.line();}}generateComplexTypeReexports(e){let t=e.dependencies?.filter(r=>["complex-type"].includes(r.kind)).map(r=>({tsPackage:`../${re(r.package)}/${G(r.name)}`,name:E(r.name)}));if(t&&t.length>0){for(let r of t)this.lineSM(`export type { ${r.name} } from "${r.tsPackage}"`);this.line();}}addFieldExtension(e,t){if(t.type.kind==="primitive-type"){let r=K(`_${e}`);this.lineSM(`${r}?: Element`);}}generateType(e,t){let r;t.identifier.name==="Reference"?r="Reference<T extends string = string>":(t.identifier.kind,r=x(t.identifier));let i;if(t.base&&(i=`extends ${ft(t.base.url)}`),this.debugComment(t.identifier),!t.fields&&!i&&!P(t)){this.lineSM(`export type ${r} = object`);return}this.curlyBlock(["export","interface",r,i],()=>{if(P(t)){let o=[t.identifier];o.push(...e.resourceChildren(t.identifier)),this.lineSM(`resourceType: ${o.sort((a,c)=>a.name.localeCompare(c.name)).map(a=>`"${a.name}"`).join(" | ")}`),this.line();}if(!t.fields)return;let s=Object.entries(t.fields).sort((o,a)=>o[0].localeCompare(a[0]));for(let[o,a]of s){if(q(a))continue;this.debugComment(o,":",a);let c=K(o),l;a.enum?l=dr(a.enum):t.identifier.name==="Reference"&&c==="reference"?l="`${T}/${string}`":a.reference&&a.reference.length>0?l=`Reference<${a.reference.map(g=>`"${g.name}"`).join(" | ")}>`:Je(a.type)?l=gr(a.type.name):M(a.type)?l=x(a.type):l=a.type.name;let p=a.required?"":"?",d=a.array?"[]":"";this.lineSM(`${c}${p}: ${l}${d}`),["resource","complex-type"].includes(t.identifier.kind)&&this.addFieldExtension(o,a);}});}generateResourceTypePredicate(e){if(!P(e))return;let t=x(e.identifier);this.curlyBlock(["export","const",`is${t}`,"=",`(resource: any): resource is ${t}`,"=>"],()=>{this.lineSM(`return resource !== null && typeof resource === "object" && (resource as {resourceType: string}).resourceType === "${e.identifier.name}"`);});}generateNestedTypes(e,t){if(t.nested)for(let r of t.nested)this.generateType(e,r),this.line();}generateProfileType(e,t){this.debugComment("flatProfile",t);let r=x(t.identifier);this.debugComment("identifier",t.identifier),this.debugComment("base",t.base),this.curlyBlock(["export","interface",r],()=>{this.lineSM(`__profileUrl: "${t.identifier.url}"`),this.line();for(let[i,s]of Object.entries(t.fields??{})){if(q(s))continue;this.debugComment(i,s);let o=K(i),a;if(s.enum)a=dr(s.enum);else if(s.reference&&s.reference.length>0){let c=e.findLastSpecialization(t);if(!z(c))throw new Error(`Invalid specialization for ${t.identifier}`);let l=c.fields?.[i];if(l===void 0||q(l)||l.reference===void 0)throw new Error(`Invalid field declaration for ${i}`);let p=l.reference.map(m=>m.name),d=s.reference.map(m=>{let g=e.findLastSpecializationByIdentifier(m);return g.name!==m.name?`"${g.name}" /*${m.name}*/`:`'${m.name}'`}).join(" | ");p.length===1&&p[0]==="Resource"&&d!=='"Resource"'?a=`Reference<"Resource" /* ${d} */ >`:a=`Reference<${d}>`;}else if(M(s.type))a=x(s.type);else if(Je(s.type))a=gr(s.type.name);else {if(s.type===void 0)throw new Error(`Undefined type for '${i}' field at ${Wt(t)}`);a=s.type.name;}this.lineSM(`${o}${s.required?"":"?"}: ${a}${s.array?"[]":""}`);}}),this.line();}generateAttachProfile(e){let t=x(e.base),r=x(e.identifier),i=Object.entries(e.fields||{}).filter(([s,o])=>o&&X(o)&&o.type!==void 0).map(([s])=>K(s));this.curlyBlock([`export const attach_${r}_to_${t} =`,`(resource: ${t}, profile: ${r}): ${t}`,"=>"],()=>{this.curlyBlock(["return"],()=>{this.line("...resource,"),this.curlyBlock(["meta:"],()=>{this.line(`profile: ['${e.identifier.url}']`);},[","]),i.forEach(s=>{this.line(`${s}: ${H("profile",s)},`);});});}),this.line();}generateExtractProfile(e,t){let r=x(t.base),i=x(t.identifier),s=Object.entries(t.fields||{}).filter(([c,l])=>X(l)&&l.type!==void 0).map(([c])=>c),o=e.findLastSpecialization(t);if(!z(o))throw new Error(`Specialization not found for ${t.identifier.url}`);let a={};this.curlyBlock([`export const extract_${i}_from_${r} =`,`(resource: ${r}): ${i}`,"=>"],()=>{s.forEach(c=>{let l=K(c),p=t.fields?.[c],d=o.fields?.[c];if(!X(p)||!X(d))return;p.required&&!d.required&&this.curlyBlock([`if (${H("resource",l)} === undefined)`],()=>this.lineSM(`throw new Error("'${l}' is required for ${t.identifier.url}")`));let m=p?.reference?.map(h=>h.name),g=d?.reference?.map(h=>h.name);if(m&&g&&m.length!==g.length){let h=`reference_is_valid_${l}`;this.curlyBlock(["const",h,"=","(ref?: Reference)","=>"],()=>{this.line("return !ref"),this.indentBlock(()=>{g.forEach(f=>{this.line(`|| ref.reference?.startsWith('${f}/')`);}),this.line(";");});});let u=p?.required?"":`!${H("resource",l)} || `;p.array?u+=`${H("resource",l)}.every( (ref) => ${h}(ref) )`:u+=`!${h}(${H("resource",l)})`,this.curlyBlock(["if (",u,")"],()=>{this.lineSM(`throw new Error("'${c}' has different references in profile and specialization")`);}),this.line(),a[c]=true;}}),this.curlyBlock(["return"],()=>{this.line(`__profileUrl: '${t.identifier.url}',`),s.forEach(c=>{let l=K(c);a[c]?this.line(`${l}:`,`${H("resource",l)} as ${i}['${l}'],`):this.line(`${l}:`,`${H("resource",l)},`);});});});}generateResourceModule(e,t){this.cat(`${fi(t.identifier)}`,()=>{if(this.generateDisclaimer(),["complex-type","resource","logical"].includes(t.identifier.kind))this.generateDependenciesImports(t),this.generateComplexTypeReexports(t),this.generateNestedTypes(e,t),this.comment("CanonicalURL:",t.identifier.url),this.generateType(e,t),this.generateResourceTypePredicate(t);else if(de(t)){let r=e.flatProfile(t);this.generateDependenciesImports(r),this.comment("CanonicalURL:",t.identifier.url),this.generateProfileType(e,r),this.generateAttachProfile(r),this.generateExtractProfile(e,r);}else throw new Error(`Profile generation not implemented for kind: ${t.identifier.kind}`)});}generate(e){let t=[...e.collectComplexTypes(),...e.collectResources(),...this.opts.generateProfile?e.collectProfiles().filter(i=>e.isWithMetaField(i)):[]],r=at(t);this.cd("/",()=>{for(let[i,s]of Object.entries(r)){let o=di(i);this.cd(o,()=>{for(let a of s)this.generateResourceModule(e,a);this.generateFhirPackageIndexFile(s);});}});}};var mr=n=>{let e=()=>n.writtenFiles().map(t=>({path:R.normalize(R.join(n.opts.outputDir,t)),filename:t.replace(/^.*[\\/]/,""),content:"",exports:[],size:0,timestamp:new Date}));return {generate:async({index:t})=>(n.generate(t),e()),setOutputDir:t=>n.opts.outputDir=t,build:async t=>e()}},yr=n=>{let e=n.replace(/[^a-zA-Z0-9\-_.@#()]/g,"");return e.length===0?"unknown":e},yi=async(n,e)=>{e.info("Cleaning outputs...");try{e.info(`Clean ${n.outputDir}`),F.rmSync(n.outputDir,{recursive:!0,force:!0}),n.typeSchemaOutputDir&&(e.info(`Clean ${n.typeSchemaOutputDir}`),F.rmSync(n.typeSchemaOutputDir,{recursive:!0,force:!0})),n.exportTypeTree&&(e.info(`Clean ${n.exportTypeTree}`),F.rmSync(n.exportTypeTree,{recursive:!0,force:!0}));}catch(t){e.warn(`Error cleaning output directory: ${t instanceof Error?t.message:String(t)}`);}},Si=async(n,e,t)=>{await L.mkdir(e,{recursive:true}),t.info(`Writing TypeSchema files to ${e}/...`);let r={};for(let i of n){let s={name:i.identifier.package,version:i.identifier.version},o=yr(S(s)),a=yr(`${i.identifier.name}(${ge(i.identifier.url)})`),c=JSON.stringify(i,null,2),l=R.join(e,o,a);r[l]||(r[l]=[]),r[l]?.some(p=>p===c)||r[l].push(c);}for(let[i,s]of Object.entries(r))await Promise.all(s.map(async(o,a)=>{let c;a===0?c=`${i}.typeschema.json`:c=`${i}-${a}.typeschema.json`,await L.mkdir(R.dirname(c),{recursive:true}),await L.writeFile(c,o);}));},bi=async(n,e,t)=>{t.info(`Writing TypeSchema files to: ${e}`),await L.mkdir(R.dirname(e),{recursive:true}),t.info(`Writing TypeSchemas to one file ${e}...`);for(let r of n){let i=JSON.stringify(r,null,2);await L.appendFile(e,`${i}
 `);}},vi=async(n,e,t)=>{if(e.typeSchemaOutputDir)try{R.extname(e.typeSchemaOutputDir)===".ndjson"?await bi(n,e.typeSchemaOutputDir,t):await Si(n,e.typeSchemaOutputDir,t),t.info("Writing TypeSchema - DONE");}catch(r){if(t.error("Failed to write TypeSchema output",r instanceof Error?r:new Error(String(r))),e.throwException)throw r}},oe=class{schemas=[];options;generators=new Map;cache;pendingOperations=[];typeSchemaGenerator;logger;packages=[];progressCallback;typeSchemaConfig;constructor(e={}){this.options={outputDir:e.outputDir||"./generated",verbose:e.verbose??false,overwrite:e.overwrite??true,cache:e.cache??true,cleanOutput:e.cleanOutput??true,typeSchemaConfig:e.typeSchemaConfig,manager:e.manager||null,throwException:e.throwException||false,typeSchemaOutputDir:e.typeSchemaOutputDir,exportTypeTree:e.exportTypeTree,treeShake:e.treeShake},this.typeSchemaConfig=e.typeSchemaConfig,this.logger=e.logger||I({verbose:this.options.verbose,prefix:"API"}),this.options.cache&&(this.cache=new O(this.typeSchemaConfig));}fromPackage(e,t){let r=qe({name:e,version:t||"latest"});return this.packages.push(r),this}fromPackageRef(e){return this.packages.push(e),this}fromFiles(...e){this.logger.debug(`Loading from ${e.length} TypeSchema files`);let t=this.loadFromFiles(e);return this.pendingOperations.push(t),this}fromSchemas(e){return this.logger.debug(`Adding ${e.length} TypeSchemas to generation`),this.schemas=[...this.schemas,...e],this}typescriptDepricated(e={}){let t=`${this.options.outputDir}/types`,r=new se({outputDir:t,moduleFormat:e.moduleFormat||"esm",generateIndex:e.generateIndex??true,includeDocuments:e.includeDocuments??true,namingConvention:e.namingConvention||"PascalCase",includeExtensions:e.includeExtensions??false,includeProfiles:e.includeProfiles??false,generateValueSets:e.generateValueSets??false,includeValueSetHelpers:e.includeValueSetHelpers??false,valueSetStrengths:e.valueSetStrengths??["required"],logger:this.logger.child("TS"),valueSetMode:e.valueSetMode??"required-only",valueSetDirectory:e.valueSetDirectory??"valuesets",verbose:this.options.verbose,validate:true,overwrite:this.options.overwrite});return this.generators.set("typescript",r),this.logger.debug(`Configured TypeScript generator (${e.moduleFormat||"esm"})`),this}typescript(e){let t={outputDir:R.join(this.options.outputDir,"/types"),tabSize:4,withDebugComment:false,commentLinePrefix:"//",generateProfile:true,exportTypeTree:this.options.exportTypeTree},r={logger:this.logger,...t,...e},i=mr(new Oe(r));return this.generators.set("typescript",i),this.logger.debug(`Configured TypeScript generator (${JSON.stringify(r,void 0,2)})`),this}csharp(e,t){let r=mr(new we({outputDir:R.join(this.options.outputDir,"/types"),staticSourceDir:t??void 0,targetNamespace:e,logger:new _({prefix:"C#",timestamp:true,verbose:true,suppressLoggingLevel:[]})}));return this.generators.set("C#",r),this.logger.debug("Configured C# generator"),this}onProgress(e){return this.progressCallback=e,this}outputTo(e){this.logger.debug(`Setting output directory: ${e}`),this.options.outputDir=e;for(let t of this.generators.values())t.setOutputDir&&t.setOutputDir(e);return this}verbose(e=true){return this.options.verbose=e,this.logger?.configure({verbose:e}),this}throwException(e=true){return this.options.throwException=e,this}cleanOutput(e=true){return this.options.cleanOutput=e,this}writeTypeTree(e){return this.options.exportTypeTree=e,this}treeShake(e){return this.options.treeShake=e,this}writeTypeSchemas(e){return this.options.typeSchemaOutputDir=e,this}async generate(){let e=performance.now(),t={success:false,outputDir:this.options.outputDir,filesGenerated:[],errors:[],warnings:[],duration:0};this.logger.debug(`Starting generation with ${this.generators.size} generators`);try{this.options.cleanOutput&&yi(this.options,this.logger),this.logger.info("Initialize Canonical Manager");let r=CanonicalManager({packages:this.packages,workingDir:".codegen-cache/canonical-manager-cache"}),i=await r.init(),s=Object.values(i),o=await ee(r,{logger:this.logger,focusedPackages:s}),a=await _t(o,this.logger);await vi(a,this.options,this.logger);let c=ct(a,this.logger);this.options.treeShake&&(c=rr(c,this.options.treeShake,this.logger)),this.options.exportTypeTree&&await c.exportTree(this.options.exportTypeTree),this.logger.debug(`Executing ${this.generators.size} generators`),await this.executeGenerators(t,{schemas:a,index:c}),this.logger.info("Generation completed successfully"),t.success=t.errors.length===0,this.logger.debug(`Generation completed: ${t.filesGenerated.length} files`);}catch(r){if(this.logger.error("Code generation failed",r instanceof Error?r:new Error(String(r))),t.errors.push(r instanceof Error?r.message:String(r)),this.options.throwException)throw r}return {...t,success:t.errors.length===0,duration:performance.now()-e}}async build(){let e={};for(let[t,r]of this.generators.entries())r.build&&(e[t]=await r.build(this.schemas));return e}reset(){return this.schemas=[],this.generators.clear(),this.progressCallback=void 0,this}getSchemas(){return [...this.schemas]}getGenerators(){return Array.from(this.generators.keys())}async loadFromFiles(e){this.typeSchemaGenerator||(this.typeSchemaGenerator=new D({verbose:this.options.verbose,logger:this.logger.child("Schema"),treeshake:this.typeSchemaConfig?.treeshake},this.typeSchemaConfig));let r=await new W({format:"auto"}).parseFromFiles(e);this.schemas=[...this.schemas,...r],this.cache&&this.cache.setMany(r);}async executeGenerators(e,t){for(let[r,i]of this.generators.entries()){this.logger.info(`Generating ${r}...`);try{let s=await i.generate(t);e.filesGenerated.push(...s.map(o=>o.path||o.filename)),this.logger.info(`Generating ${r} finished successfully`);}catch(s){if(e.errors.push(`${r} generator failed: ${s instanceof Error?s.message:String(s)}`),this.options.throwException)throw s}}}};var mt={outputDir:"./generated",verbose:false,overwrite:true,validate:true,cache:true,cleanOutput:true,typescript:{moduleFormat:"esm",generateIndex:true,includeDocuments:false,namingConvention:"PascalCase",strictMode:true,includeProfiles:true,includeExtensions:false,includeCodeSystems:false,includeOperations:false,generateValueSets:false,valueSetDirectory:"valuesets",valueSetMode:"required-only",valueSetStrengths:["required"],includeValueSetHelpers:false,fhirVersion:"R4",resourceTypes:[],maxDepth:10,profileOptions:{generateKind:"interface",includeConstraints:true,includeDocumentation:true,strictMode:false,subfolder:"profiles"},generateBuilders:false,builderOptions:{includeValidation:true,includeFactoryMethods:true,includeInterfaces:true,generateNestedBuilders:true,includeHelperMethods:true,supportPartialBuild:true,includeJSDoc:true,generateFactories:true,includeTypeGuards:true,handleChoiceTypes:true,generateArrayHelpers:true},validatorOptions:{includeCardinality:true,includeTypes:true,includeConstraints:true,includeInvariants:false,validateRequired:true,allowAdditional:false,strictValidation:false,collectMetrics:false,generateAssertions:true,generatePartialValidators:true,optimizePerformance:true,includeJSDoc:true,generateCompositeValidators:true},guardOptions:{includeRuntimeValidation:true,includeErrorMessages:true,treeShakeable:true,targetTSVersion:"5.0",strictGuards:false,includeNullChecks:true,verbose:false}},typeSchema:{enablePersistence:true,cacheDir:".typeschema-cache",maxAge:1440*60*1e3,validateCached:true,forceRegenerate:false,shareCache:true,cacheKeyPrefix:"",treeshake:[],singleFile:false,profiles:{autoDetect:true}},packages:[],files:[],$schema:""},Be=["atomic-codegen.config.ts","atomic-codegen.config","atomic-codegen.config.json",".atomic-codegenrc","atomic-codegen.json",".atomic-codegen.json","codegen.config.json","codegen.json"],yt=class{validate(e){let t={valid:true,errors:[],warnings:[]};if(!e||typeof e!="object")return t.valid=false,t.errors.push({path:"root",message:"Configuration must be an object",value:e}),t;let r=e;r.outputDir!==void 0&&typeof r.outputDir!="string"&&t.errors.push({path:"outputDir",message:"outputDir must be a string",value:r.outputDir});let i=["verbose","overwrite","validate","cache"];for(let s of i)r[s]!==void 0&&typeof r[s]!="boolean"&&t.errors.push({path:s,message:`${s} must be a boolean`,value:r[s]});if(r.typescript!==void 0){let s=this.validateTypeScriptConfig(r.typescript);t.errors.push(...s);}if(r.typeSchema!==void 0){let s=this.validateTypeSchemaConfig(r.typeSchema);t.errors.push(...s);}return r.packages!==void 0&&(Array.isArray(r.packages)?r.packages.forEach((s,o)=>{typeof s!="string"&&t.errors.push({path:`packages[${o}]`,message:"package name must be a string",value:s});}):t.errors.push({path:"packages",message:"packages must be an array",value:r.packages})),r.files!==void 0&&(Array.isArray(r.files)?r.files.forEach((s,o)=>{typeof s!="string"&&t.errors.push({path:`files[${o}]`,message:"file path must be a string",value:s});}):t.errors.push({path:"files",message:"files must be an array",value:r.files})),t.valid=t.errors.length===0,t.valid&&(t.config=r),t}validateTypeScriptConfig(e){let t=[];if(typeof e!="object"||e===null)return t.push({path:"typescript",message:"typescript config must be an object",value:e}),t;let r=e;r.moduleFormat!==void 0&&(["esm","cjs"].includes(r.moduleFormat)||t.push({path:"typescript.moduleFormat",message:'moduleFormat must be "esm" or "cjs"',value:r.moduleFormat})),r.namingConvention!==void 0&&(["PascalCase","camelCase"].includes(r.namingConvention)||t.push({path:"typescript.namingConvention",message:'namingConvention must be "PascalCase" or "camelCase"',value:r.namingConvention}));let i=["generateIndex","includeDocuments","strictMode","includeProfiles","includeExtensions","includeCodeSystems","includeOperations","generateValueSets","includeValueSetHelpers"];for(let s of i)r[s]!==void 0&&typeof r[s]!="boolean"&&t.push({path:`typescript.${s}`,message:`${s} must be a boolean`,value:r[s]});if(r.validatorOptions!==void 0){let s=this.validateValidatorOptions(r.validatorOptions);t.push(...s);}if(r.guardOptions!==void 0){let s=this.validateGuardOptions(r.guardOptions);t.push(...s);}if(r.profileOptions!==void 0){let s=this.validateProfileOptions(r.profileOptions);t.push(...s);}return t}validateValidatorOptions(e){let t=[];if(typeof e!="object"||e===null)return t.push({path:"typescript.validatorOptions",message:"validatorOptions must be an object",value:e}),t;let r=e,i=["includeCardinality","includeTypes","includeConstraints","includeInvariants","validateRequired","allowAdditional","strictValidation","collectMetrics","generateAssertions","generatePartialValidators","optimizePerformance","includeJSDoc","generateCompositeValidators"];for(let s of i)r[s]!==void 0&&typeof r[s]!="boolean"&&t.push({path:`typescript.validatorOptions.${s}`,message:`${s} must be a boolean`,value:r[s]});return t}validateGuardOptions(e){let t=[];if(typeof e!="object"||e===null)return t.push({path:"typescript.guardOptions",message:"guardOptions must be an object",value:e}),t;let r=e;r.targetTSVersion!==void 0&&(["3.8","4.0","4.5","5.0"].includes(r.targetTSVersion)||t.push({path:"typescript.guardOptions.targetTSVersion",message:'targetTSVersion must be one of: "3.8", "4.0", "4.5", "5.0"',value:r.targetTSVersion}));let i=["includeRuntimeValidation","includeErrorMessages","treeShakeable","strictGuards","includeNullChecks","verbose"];for(let s of i)r[s]!==void 0&&typeof r[s]!="boolean"&&t.push({path:`typescript.guardOptions.${s}`,message:`${s} must be a boolean`,value:r[s]});return t}validateProfileOptions(e){let t=[];if(typeof e!="object"||e===null)return t.push({path:"typescript.profileOptions",message:"profileOptions must be an object",value:e}),t;let r=e;r.generateKind!==void 0&&(["interface","type","both"].includes(r.generateKind)||t.push({path:"typescript.profileOptions.generateKind",message:'generateKind must be "interface", "type", or "both"',value:r.generateKind})),r.subfolder!==void 0&&typeof r.subfolder!="string"&&t.push({path:"typescript.profileOptions.subfolder",message:"subfolder must be a string",value:r.subfolder});let i=["includeConstraints","includeDocumentation","strictMode"];for(let s of i)r[s]!==void 0&&typeof r[s]!="boolean"&&t.push({path:`typescript.profileOptions.${s}`,message:`${s} must be a boolean`,value:r[s]});return t}validateTypeSchemaConfig(e){let t=[];if(typeof e!="object"||e===null)return t.push({path:"typeSchema",message:"typeSchema config must be an object",value:e}),t;let r=e,i=["enablePersistence","validateCached","forceRegenerate","shareCache"];for(let o of i)r[o]!==void 0&&typeof r[o]!="boolean"&&t.push({path:`typeSchema.${o}`,message:`${o} must be a boolean`,value:r[o]});let s=["cacheDir","cacheKeyPrefix"];for(let o of s)r[o]!==void 0&&typeof r[o]!="string"&&t.push({path:`typeSchema.${o}`,message:`${o} must be a string`,value:r[o]});if(r.maxAge!==void 0&&(typeof r.maxAge!="number"||r.maxAge<=0)&&t.push({path:"typeSchema.maxAge",message:"maxAge must be a positive number",value:r.maxAge}),r.profiles!==void 0)if(typeof r.profiles!="object"||r.profiles===null)t.push({path:"typeSchema.profiles",message:"profiles must be an object",value:r.profiles});else {let o=r.profiles;o.autoDetect!==void 0&&typeof o.autoDetect!="boolean"&&t.push({path:"typeSchema.profiles.autoDetect",message:"autoDetect must be a boolean",value:o.autoDetect});}return t}},St=class{validator=new yt;async autoload(e=process.cwd()){let t=await this.findConfigFile(e);return t?this.loadFromFile(t):{...mt}}async loadFromFile(e){try{let t;if(e.endsWith(".ts")||e.endsWith("")){let s=await import(resolve(e));t=s.default||s;}else {let i=await readFile(e,"utf-8");t=JSON.parse(i);}let r=this.validator.validate(t);if(!r.valid){let i=r.errors.map(s=>`${s.path}: ${s.message}`).join(`
 `);throw new Error(`Configuration validation failed:
 ${i}`)}return this.mergeWithDefaults(r.config)}catch(t){throw t instanceof Error?new Error(`Failed to load config from ${e}: ${t.message}`):t}}async findConfigFile(e){for(let t of Be){let r=resolve(e,t);if(existsSync(r))return r}return null}mergeWithDefaults(e){return {...mt,...e,typescript:{...mt.typescript,...e.typescript}}}},wi=new St;async function Le(n){return wi.autoload(n)}var br={command:"generate",describe:"Generate code based on configuration file settings",builder:n=>n.option("verbose",{alias:"v",type:"boolean",default:false,description:"Enable verbose output"}).example("$0 generate","Generate code using settings from config file").example("$0 generate --verbose","Generate with verbose output"),handler:async n=>{if(n._.length>1){let o=n._.slice(1).join(" ");C(`Invalid syntax: 'atomic-codegen generate ${o}'

package/dist/index.js

@@ -5942,7 +5942,9 @@ var TypeScript = class extends Writer {
     if (!isResourceTypeSchema(schema)) return;
     const name = tsResourceName(schema.identifier);
     this.curlyBlock(["export", "const", `is${name}`, "=", `(resource: any): resource is ${name}`, "=>"], () => {
-      this.lineSM(`return resource && resource.resourceType === "${schema.identifier.name}"`);
+      this.lineSM(
+        `return resource !== null && typeof resource === "object" && (resource as {resourceType: string}).resourceType === "${schema.identifier.name}"`
+      );
     });
   }
   generateNestedTypes(tsIndex, schema) {