@atomic-ehr/codegen 0.0.18 → 0.0.19-canary.20260917110212.f40edba

package/dist/cli/index.js

@@ -1,15 +1,26 @@
 #!/usr/bin/env node
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o},os=(e,t,n,i,r,o,s,a)=>{if(e.excluded){i.add("validate_excluded"),r.push(`errors.extend(validate_excluded(self._resource, profile_name, ${JSON.stringify(n)}))`);return}if(e.required&&(i.add("validate_required"),r.push(`errors.extend(validate_required(self._resource, profile_name, ${JSON.stringify(n)}))`)),e.valueConstraint){let c=e.valueConstraint.validateOnly?"validate_pattern_value":"validate_fixed_value";i.add(c);let l=JSON.stringify(e.valueConstraint.value);r.push(`errors.extend(${c}(self._resource, profile_name, ${JSON.stringify(n)}, ${l}))`);}if(j(e)){if(e.enum){i.add("validate_enum");let c=e.enum.isOpen?o:r,l=e.enum.isOpen?"warnings":"errors";ze(c,l,"validate_enum",[JSON.stringify(n)],e.enum.values);}if(e.mustSupport&&!e.required&&(i.add("validate_must_support"),o.push(`warnings.extend(validate_must_support(self._resource, profile_name, ${JSON.stringify(n)}))`)),e.reference&&e.reference.resource.length>0){i.add("validate_reference");let c=e.reference.resource.map(l=>s.findLastSpecializationByIdentifier(l).name);ze(r,"errors","validate_reference",[JSON.stringify(n)],c);}t?.slices&&as(e,t,n,i,r,s,a);}},ss=(e,t,n,i,r)=>{let o=[],s=[],a=new Set(Object.keys(t)),c=(e.required??[]).filter(p=>!a.has(p)),l=n.type;for(let p of c){let d=l?i.sliceChoiceVariants(l.package,l,e.elements??[],p):void 0;d&&d.length>0?s.push(d.map(u=>E(u,r))):o.push(E(p,r));}if(l&&e.elements){let p=i.constrainedChoice(l.package,l,e.elements);p&&!c.includes(p.choiceBase)&&o.push(E(p.variant,r));}return {requiredFields:o,choiceGroups:s}},as=(e,t,n,i,r,o,s)=>{if(t.slices)for(let[a,c]of Object.entries(t.slices)){let l=c.match??{};if(Object.keys(l).length===0)continue;if(c.min!==void 0||c.max!==void 0){let f=c.min??0,m=c.max??0;i.add("validate_slice_cardinality"),r.push(`errors.extend(validate_slice_cardinality(self._resource, profile_name, ${JSON.stringify(n)}, ${JSON.stringify(l)}, ${JSON.stringify(a)}, ${f}, 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r){if(c.elementTypeId&&wi(a,e,t,c.elementTypeId),!c.isTypeDiscriminated||!c.typeDiscriminatorResource)continue;let l=s.find(p=>p.identifier.kind==="resource"&&p.identifier.name===c.typeDiscriminatorResource)?.identifier;l&&At(a,e,t,n,l);}for(let c of o)c.isComplex&&c.subExtensions||c.valueFieldTypes?.length===1&&c.valueFieldTypes[0]&&wi(a,e,t,c.valueFieldTypes[0]);return a},ps=(e,t,n)=>{let i=new Map;for(let r of n){if(!r.url)continue;let o=$n(e,t.identifier.package,r);o&&!i.has(o.className)&&i.set(o.className,o);}return i},ds=(e,t,n,i,r,o,s,a,c)=>{e.line("from __future__ import annotations"),e.line();let l=[...r.params,...r.accessors,...r.sliceAutoFields].some(h=>h.pyType.includes("Literal[")),p=c.some(h=>!h.isTypeDiscriminated),d=i.length>0||p,u=i.length>0||c.length>0,f=r.params.length>0||r.accessors.length>0||c.length>0||i.length>0,m=[];u&&m.push("Any"),f&&m.push("cast"),(d||l)&&m.push("Literal"),d&&m.push("overload"),m.length>0&&(e.pyImportFrom("typing",...[...m].sort()),e.line());let g=t.base.name,y=ae(e.opts.rootPackageName,t.base.package);n?e.pyImportFrom(`${y}.${P(g)}`,g):e.pyImportFrom(`${y}.base`,g),i.length>0&&e.pyImportFrom(`${y}.base`,"Extension");for(let[h,x]of [...o.entries()].sort(([k],[$])=>k.localeCompare($)))e.pyImportFrom(h,...[...x].sort());for(let[h,x]of [...s.entries()].sort(([k],[$])=>k.localeCompare($)))e.pyImportFrom(`.${x.moduleName}`,h);e.pyImportFrom(`${e.opts.rootPackageName}.profile_helpers`,...a),e.line(),e.line();},fs=(e,t,n,i)=>{e.line("@classmethod"),e.line(`def from_resource(cls, resource: ${t}) -> "${n}":`),e.indentBlock(()=>{i&&(e.line('meta = 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cls.apply(cls.create_resource())"))),e.line();},gs=(e,t,n,i)=>{e.line("def validate(self) -> dict[str, list[str]]:"),e.indentBlock(()=>{e.line(`profile_name = "${t}"`),e.line("errors: list[str] = []"),e.line("warnings: list[str] = []");for(let r of n)e.line(r);for(let r of i)e.line(r);e.line('return {"errors": errors, "warnings": warnings}');});},ys=e=>{let{w:t,tsIndex:n,flatProfile:i,baseTypeName:r,annotatedBaseTypeName:o,className:s,isResourceBase:a,errorLines:c,warningLines:l,factoryInfo:p,sliceDefs:d,resolvedNames:u}=e,f=p.params.length>0||p.sliceAutoFields.length>0;t.line(`def __init__(self, resource: ${o}) -> None:`),t.indentBlock(()=>t.line("self._resource = resource")),t.line(),fs(t,o,s,a),us(t,o,s,a),Li(t,r,o,a,f,p),t.line(),ms(t,s,f,p),t.line(`def to_resource(self) -> ${o}:`),t.indentBlock(()=>t.line("return 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${JSON.stringify(s)}`),e.line(),Pi(e,c),ys({w:e,tsIndex:t,flatProfile:n,baseTypeName:r,annotatedBaseTypeName:p,className:i,isResourceBase:o,factoryInfo:a,sliceDefs:c,resolvedNames:u,errorLines:f,warningLines:m});}),e.line();},Ss=(e,t,n)=>{e.cat("__init__.py",()=>{e.generateDisclaimer();let i=new Set;for(let r of n){let o=Ve(r),s=we(t,r);i.has(o)||(i.add(o),e.pyImportFrom(`.${s}`,o));}e.line(),e.squareBlock(["__all__","="],()=>{for(let r of [...i].sort())e.line(`'${r}',`);});});},En=(e,t,n)=>{n.length!==0&&e.cd("profiles",()=>{for(let i of n){let r=we(t,i);e.cat(`${r}.py`,()=>{e.generateDisclaimer(),hs(e,t,i);});}Ss(e,t,n);});};var He=e=>Le(import.meta.url,"python",e),_n={snake_case:P,PascalCase:z,camelCase:de},Ui=100,Vt={Coding:{code:"T"},CodeableConcept:{coding:"Coding[T]"},Reference:{type:"T"}},Mn=e=>e[e.length-1]??"",zi=e=>{let t=new Map,n=i=>{for(let r of i.generic?.params??[])t.has(r.typeVar)||t.set(r.typeVar,r.constraint.name);};n(e);for(let i of e.nested??[])n(i);return Array.from(t.entries()).sort(([i],[r])=>i.localeCompare(r)).map(([i,r])=>({typeVar:i,constraint:r}))},Ts=e=>{let t=e.values.map(n=>`"${n}"`).join(", ");return e.isOpen?`Literal[${t}] | str`:`Literal[${t}]`},wt=class extends ve{nameFormatFunction;tsIndex;forFhirpyClient;fieldFormat;constructor(t){super({...t,resolveAssets:t.resolveAssets??He}),this.nameFormatFunction=this.getFieldFormatFunction(t.fieldFormat),this.forFhirpyClient=this.resolveClient(t),this.fieldFormat=t.fieldFormat;}resolveClient(t){return t.client!==void 0?t.client==="fhirpy":t.fhirpyClient!==void 0?(this.logger()?.warn('python: `fhirpyClient` is deprecated; use `client: "fhirpy" | "none"` instead.'),t.fhirpyClient):true}async generate(t){this.tsIndex=t;let n={groupedComplexTypes:Ae(t.collectComplexTypes()),groupedResources:Ae(t.collectResources())},i=(this.opts.generateProfile??false)&&t.collectSnapshotProfiles().length>0;this.generateRootPackages(n,i),this.generateSDKPackages(t,n);}generateRootPackages(t,n){this.generateRootInitFile(t),this.forFhirpyClient&&(this.fieldFormat==="camelCase"?this.copyAssets(He("fhirpy_base_model_camel_case.py"),"fhirpy_base_model.py"):this.copyAssets(He("fhirpy_base_model.py"),"fhirpy_base_model.py")),n&&this.copyAssets(He("profile_helpers.py"),"profile_helpers.py"),this.copyAssets(He("requirements.txt"),"requirements.txt");}generateSDKPackages(t,n){this.generateComplexTypesPackages(n.groupedComplexTypes),this.generateResourcePackages(t,n);}generateComplexTypesPackages(t){for(let[n,i]of Object.entries(t))this.cd(`/${P(n)}`,()=>{this.generateBasePy(n,i);});}generateResourcePackages(t,n){let i=this.opts.generateProfile?Ae(t.collectSnapshotProfiles()):{};for(let[r,o]of Object.entries(n.groupedResources))this.cd(`/${P(r)}`,()=>{this.generateResourcePackageContent(r,o,n.groupedComplexTypes[r]||[]);let s=i[r];s&&s.length>0&&En(this,t,s);});for(let[r,o]of Object.entries(i))n.groupedResources[r]||!o||o.length===0||this.cd(`/${P(r)}`,()=>{En(this,t,o);});}generateResourcePackageContent(t,n,i){let r=ae(this.opts.rootPackageName,t);this.generateResourcePackageInit(r,n,i),n.some(s=>zi(s).length>0)&&this.copyAssets(He("resource_preprocessor.py"),"resource_preprocessor.py");for(let s of n)this.generateResourceModule(s);}generateRootInitFile(t){this.cd("/",()=>{this.cat("__init__.py",()=>{this.generateDisclaimer();let n=this.collectAndImportAllModels(t);this.generateModelRebuilds(n),this.importProfileRegistrations(t);});});}collectAndImportAllModels(t){let n=[];for(let i of Object.keys(t.groupedResources)){let r=ae(this.opts.rootPackageName,i);n.push(...this.importComplexTypes(r,t.groupedComplexTypes[i])),n.push(...this.importResources(r,false,t.groupedResources[i]));}return this.line(),n}generateModelRebuilds(t){for(let n of t.sort())this.line(`${n}.model_rebuild()`);}importProfileRegistrations(t){if(this.opts.generateProfile){this.line();for(let n of Object.keys(t.groupedResources)){let i=`${ae(this.opts.rootPackageName,n)}.profiles`;this.line(`import ${i}  # noqa: F401`);}}}generateBasePy(t,n){let i=n.some(r=>r.identifier.name in Vt);this.cat("base.py",()=>{this.generateDisclaimer(),this.generateDefaultImports(i),i&&(this.line(),this.line("T = TypeVar('T', bound=str, default=str)")),this.line(),this.generateComplexTypes(n),this.line();});}generateComplexTypes(t){for(let n of Ri(t))this.generateNestedTypes(n),this.line(),this.generateType(n);}generateResourcePackageInit(t,n,i){this.cat("__init__.py",()=>{this.generateDisclaimer(),this.importComplexTypes(t,i);let r=this.importResources(t,true,n);this.line(),this.generateExportsDeclaration(i,r);});}importComplexTypes(t,n){if(!n||n.length===0)return [];let i=n.map(r=>r.identifier.name).sort();return this.pyImportFrom(`${t}.base`,...i),this.line(),i}buildImportLine(t,n,i){let r="",o=n;for(;o<t.length&&r.length<i;)r.length>0&&(r+=", "),r+=t[o],o++;return o<t.length&&(r+=", \\"),{line:r,next:o}}importResources(t,n,i){if(!i||i.length===0)return [];let r=[];for(let o of i){let s=this.importOneResource(o,t);!n&&!o.fields||r.push(...s);}return r}importOneResource(t,n){let i=`${n}.${P(t.identifier.name)}`,r=this.collectResourceImportNames(t);return this.pyImportFrom(i,...r),[...r]}collectResourceImportNames(t){let n=[Te(t.identifier)];for(let i of t.nested??[]){let r=Te(i.identifier);n.push(r);}return n}generateExportsDeclaration(t,n){this.squareBlock(["__all__","="],()=>{let i=[...(t||[]).map(r=>r.identifier.name),...n].sort();for(let r of i)this.line(`'${r}',`);});}generateResourceModule(t){let n=zi(t),i=n.length>0;this.cat(`${P(t.identifier.name)}.py`,()=>{if(this.generateDisclaimer(),this.generateDefaultImports(false,i,true),this.generateFhirBaseModelImport(),this.line(),this.generateDependenciesImports(t),i){let r=ae(this.opts.rootPackageName,t.identifier.package);this.pyImportFrom(`${r}.resource_preprocessor`,"preprocess_resource_fields"),this.line();for(let{typeVar:o,constraint:s}of n)this.line(`${o} = TypeVar('${o}', bound=${s}, default=${s})`);}this.line(),this.generateNestedTypes(t),this.line(),this.generateType(t);});}generateFhirBaseModelImport(){this.forFhirpyClient&&this.pyImportFrom(`${this.opts.rootPackageName}.fhirpy_base_model`,"FhirpyBaseModel");}generateType(t){let n=Te(t.identifier),i=this.getSuperClasses(t);this.line(`class ${n}(${i.join(", ")}):`),this.indentBlock(()=>{this.generateClassBody(t);}),this.line();}getSuperClasses(t){let n=[];t.base&&n.push(t.base.name),n.push(...this.injectSuperClasses(t.identifier.url)),t.identifier.name in Vt&&n.push("Generic[T]");let i=t.generic?.params??[];if(i.length>0){let r=i.map(o=>o.typeVar).join(", ");n.push(`Generic[${r}]`);}return n}generateClassBody(t){if(this.generateModelConfig(),!t.fields){this.line("pass");return}ee(t)&&this.generateResourceTypeField(t),this.generateFields(t),this.opts.generateProfile&&t.identifier.name==="Extension"&&this.generateExtensionEqualityMethods(),ee(t)&&this.generateResourceMethods(t),(t.generic?.params?.length??0)>0&&this.generateResourcePreprocessorMethod(t);}generateResourcePreprocessorMethod(t){let n=ae(this.opts.rootPackageName,t.identifier.package);this.line(),this.line("@model_validator(mode='before')"),this.line("@classmethod"),this.line("def _preprocess_resources(cls, data: Any) -> Any:"),this.line("    if isinstance(data, dict):"),this.line(`        return preprocess_resource_fields(data, "${n}")`),this.line("    return data");}generateModelConfig(){let t=this.opts.allowExtraFields?"allow":"forbid";this.line(`model_config = ConfigDict(validate_by_name=True, serialize_by_alias=True, extra="${t}")`);}generateResourceTypeField(t){let n=(t.typeFamily?.resources?.length??0)>0;this.line(`${this.nameFormatFunction("resourceType")}: str = Field(`),this.indentBlock(()=>{n||this.line(`default='${t.identifier.name}',`),this.line("alias='resourceType',"),this.line("serialization_alias='resourceType',"),this.forFhirpyClient||this.line("frozen=True,"),this.line(`pattern='${t.identifier.name}'`);}),this.line(")");}generateFields(t){let n=Object.entries(t.fields??[]).sort(([r],[o])=>r.localeCompare(o)),i=this.shouldAddPrimitiveExtensions(t);for(let[r,o]of n){if("choices"in o&&o.choices)continue;let s=this.buildFieldInfo(r,o,t);this.line(`${s.name}: ${s.type}${s.defaultValue}`),i&&"type"in o&&M(o.type)&&this.addPrimitiveExtensionField(r,o.array??false);}}shouldAddPrimitiveExtensions(t){if(!this.opts.primitiveTypeExtension||!_(t))return  false;for(let n of Object.values(t.fields??{}))if(!("choices"in n&&n.choices)&&"type"in n&&M(n.type))return  true;return  false}addPrimitiveExtensionField(t,n){let i=this.nameFormatFunction(`${t}Extension`),r=`_${t}`,o=n?"PyList[Element | None] | None":"Element | None",s=`alias="${r}", serialization_alias="${r}"`;this.line(`${i}: ${o} = Field(None, ${s})`);}buildFieldInfo(t,n,i){let r=ki(this.nameFormatFunction(t)),o=this.determineFieldType(n,t,i),s=this.getFieldDefaultValue(n,t);return {name:r,type:o,defaultValue:s}}determineFieldType(t,n,i){let r=i.identifier.name,o=t?this.getBaseFieldType(t):"",s=Vt[r]?.[n];if(s)return o=s,t.array&&(o=`PyList[${o}]`),t.required||(o=`${o} | None`),o;let a=i.generic?.params??[],c=a.find(l=>Mn(l.path)===n);if(c)return o=c.typeVar,t.array&&(o=`PyList[${o}]`),t.required||(o=`${o} | None`),o;if("type"in t&&t.type&&a.length>0){xe(this.tsIndex!==void 0);let l=this.tsIndex.resolveType(t.type);if(l&&(he(l)||_(l))){let p=l.generic?.params??[];if(p.length>0){let d=p.map(u=>a.find(f=>Mn(f.path)===Mn(u.path))?.typeVar??u.typeVar);o=`${o}[${d.join(", ")}]`;}}}if("enum"in t&&t.enum&&(("type"in t?t.type.name:"")in Vt?o=`${o}[${Ts(t.enum)}]`:t.enum.isOpen||(o=`Literal[${t.enum.values.map(d=>`"${d}"`).join(", ")}]`)),o==="Reference"&&"reference"in t&&t.reference){xe(this.tsIndex!==void 0);let l=it(t,this.tsIndex);l&&(o=`Reference[${l}]`);}return t.array&&(o=`PyList[${o}]`),t.required||(o=`${o} | None`),o}getBaseFieldType(t){return "type"in t&&t.type.kind==="resource"?`${t.type.name}Family`:"type"in t&&t.type.kind==="nested"?Te(t.type):"type"in t&&t.type.kind==="primitive-type"?Ne[t.type.name]??"str":"type"in t?t.type.name:""}getFieldDefaultValue(t,n){let i=`alias="${n}", serialization_alias="${n}"`;return t.required?` = Field(${i})`:` = Field(None, ${i})`}generateResourceMethods(t){this.line(),this.line("def model_post_init(self, __context: Any) -> None:"),this.line(`    self.__pydantic_fields_set__.add("${this.nameFormatFunction("resourceType")}")`),this.line(),this.line("def to_json(self, indent: int | None = None) -> str:"),this.line("    return self.model_dump_json(exclude_unset=True, exclude_none=True, indent=indent)"),this.line(),this.line("@classmethod"),this.line("def from_json(cls, json: str) -> Self:"),this.line("    return cls.model_validate_json(json)");}generateExtensionEqualityMethods(){this.line(),this.line("def __eq__(self, other: object) -> bool:"),this.line("    if not isinstance(other, Extension):"),this.line("        return NotImplemented"),this.line("    return self.model_dump(by_alias=True, exclude_none=True) == other.model_dump(by_alias=True, exclude_none=True)"),this.line(),this.line("def __hash__(self) -> int:"),this.line("    return hash(self.url)");}generateNestedTypes(t){if(t.nested){this.line();for(let n of t.nested)this.generateType(n);}}generateDefaultImports(t,n=false,i=false){this.pyImportFrom("__future__","annotations");let r=["BaseModel","ConfigDict","Field","PositiveInt"];n&&r.push("model_validator"),this.pyImportFrom("pydantic",...r.sort());let o=["Any","List as PyList","Literal"];(t||n)&&o.push("Generic"),this.pyImportFrom("typing",...o.sort());let s=[];(t||n)&&s.push("TypeVar"),i&&s.push("Self"),s.length>0&&this.pyImportFrom("typing_extensions",...s.sort());}generateDependenciesImports(t){!t.dependencies||t.dependencies.length===0||(this.importComplexTypeDependencies(t.dependencies),this.importResourceDependencies(t.dependencies),this.importElementIfNeeded(t));}importElementIfNeeded(t){if(!this.shouldAddPrimitiveExtensions(t)||t.identifier.name==="Element"||t.dependencies?.find(o=>o.name==="Element"))return;xe(this.tsIndex!==void 0);let i=this.tsIndex.resolveByUrl(t.identifier.package,"http://hl7.org/fhir/StructureDefinition/Element");if(!i)return;let r=Ot(this.opts.rootPackageName,i.identifier);this.pyImportFrom(r,"Element");}importComplexTypeDependencies(t){let n=t.filter(r=>r.kind==="complex-type"),i=this.groupDependenciesByPackage(n);for(let[r,o]of Object.entries(i))this.pyImportFrom(r,...o.sort());}importResourceDependencies(t){let n=t.filter(i=>i.kind==="resource");for(let i of n)this.pyImportType(i);}groupDependenciesByPackage(t){let n={};for(let i of t){let r=Ot(this.opts.rootPackageName,i);n[r]||(n[r]=[]),n[r].push(i.name);}return n}pyImportFrom(t,...n){let i=`from ${t} import ${n.join(", ")}`;this.shouldUseSingleLineImport(i,n)?this.line(i):this.writeMultiLineImport(t,n);}shouldUseSingleLineImport(t,n){return t.length<=Ui||n.length===1}writeMultiLineImport(t,n){this.line(`from ${t} import (`),this.indentBlock(()=>{let 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i=n.dependencies;return i!==void 0?Object.entries(i).map(([r,o])=>({name:r,version:o})):[]},bs=e=>{let t=[],n=[...e??[]].reverse();for(;n.length>0;){let i=n.pop();if(i&&(t.push(i),i.concept))for(let r=i.concept.length-1;r>=0;r-=1){let o=i.concept[r];o&&n.push(o);}}return t},qi=(e,t,n)=>{let{packageMeta:i,resources:r}=e,o=new Map;for(let c of r){let l=`${c.resourceType}\0${c.url}`,p=o.get(l)??[];p.push(c),o.set(l,p);}let s=c=>`${c.id??""}\0${c.name??""}`,a=[];for(let c of o.values()){let l=c.slice().sort((d,u)=>s(d).localeCompare(s(u))),p=l[0];if(p){if(l.length>1){let d=l.map(u=>u.id??u.name??u.url);n?.dryWarn("#duplicateCanonical",`Package ${H(i)} contains duplicate ${p.resourceType} canonical URL ${JSON.stringify(p.url)} for resources ${d.join(", ")}; keeping ${p.id??p.name??p.url}`);}a.push(p);}}return a.map(c=>{let l={canonicalUrl:c.url,packageId:i.name,packageVersion:i.version,verification:t};if(c.resourceType==="ValueSet")return 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i=Ln(n),r=_s(i),o={package_meta:{name:"missing_valuesets",version:Ps(i)||"0.0.0"},id:n},s=e.resolveVs(t,i)||o,a=s?.id&&!Os.test(s.id)?s.id:r;return {kind:"value-set",package:s.package_meta.name,version:s.package_meta.version,name:a,url:i}}function Wt(e,t,n){let i=n.binding?.bindingName,r=t.join("."),[o,s,a]=i?[{name:"shared",version:"1.0.0"},i,`urn:fhir:binding:${i}`]:[e.package_meta,`${e.name}.${r}_binding`,`${e.url}#${r}_binding`];return {kind:"binding",package:o.name,version:o.version,name:s,url:a}}function at(e,t,n,i){let r=Ln(n)||n,o=e.resolveVs(t,r);if(o)return Ds(e,o)}function Ds(e,t,n){if(t.expansion?.contains)return t.expansion.contains.filter(r=>r.code!==void 0).map(r=>(xe(r.code),{code:r.code,display:r.display,system:r.system}));let i=[];if(t.compose?.include){for(let r of t.compose.include)if(r.concept)for(let o of r.concept)i.push({system:r.system,code:o.code,display:o.display});else if(r.system&&!r.filter)try{let o=e.resolveAny(r.system);if(o?.concept){let 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+  hint:    '${n}' is an R5+ type and is not available when generating against R4.
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Reason: ${s.reason}`);continue}for(let a of Oe(e,r,i))t.push({schema:a,sourcePackage:o,sourceCanonical:r.url});}for(let r of e.allVs())t.push({schema:await $e(e,r),sourcePackage:R(r.package_meta),sourceCanonical:r.url});return Ln(t,n,i)};var Me={command:"generate <packages..>",describe:"Generate TypeSchema files from FHIR packages",builder:{packages:{type:"string",array:true,demandOption:true,describe:"FHIR packages to process (e.g., hl7.fhir.r4.core@4.0.1)"},output:{alias:"o",type:"string",describe:"Output file or directory",default:"./schemas.ndjson"},format:{alias:"f",type:"string",choices:["ndjson","json"],default:"ndjson",describe:"Output format for TypeSchema files"},treeshake:{alias:"t",type:"string",array:true,describe:"Only generate TypeSchemas for specific ResourceTypes (treeshaking)"},singleFile:{alias:"s",type:"boolean",default:false,describe:"Generate single TypeSchema file instead of multiple files (NDJSON format)"},verbose:{alias:"v",type:"boolean",default:false,describe:"Enable verbose output"},registry:{alias:"r",type:"string",describe:"Custom FHIR package registry URL (default: https://fs.get-ig.org/pkgs/)"}},handler:async e=>{let n=I({prefix:"TypeSchema"});try{n.info("Generating TypeSchema from FHIR packages"),n.info(`Packages: ${e.packages.join(", ")}`),n.info(`Output: ${e.output}`);let i=e.singleFile?"ndjson":e.format;n.debug(`Format: ${i}${e.singleFile&&e.format==="json"?" (forced from json due to singleFile)":""}`),e.treeshake&&e.treeshake.length>0&&n.info(`Treeshaking enabled for ResourceTypes: ${e.treeshake.join(", ")}`),e.singleFile&&n.info("Single file output enabled (NDJSON format)"),e.registry&&n.info(`Using custom registry: ${e.registry}`);let t=Date.now(),r=e.packages.map(p=>{if(p.includes("@")){let m=p.lastIndexOf("@");return {name:p.slice(0,m),version:p.slice(m+1)||"latest"}}return {name:p,version:"latest"}});n.info(`Processing packages: ${r.map(p=>`${p.name}@${p.version}`).join(", ")}`);let o=await Te(r,{logger:n,registry:e.registry,focusedPackages:r}),{schemas:s}=await Be(o,void 0,n);if(s.length===0)throw new Error("No schemas were generated from the specified packages");let a=e.output;if(!a)throw new Error("Output format not specified");await mkdir(dirname(a),{recursive:!0});let c;i==="json"?c=JSON.stringify(s,null,2):c=s.map(p=>JSON.stringify(p)).join(`
-`),await writeFile(a,c,"utf-8");let l=Date.now()-t;if(ae(`Generated ${s.length} TypeSchema definitions`,l,{schemas:s.length}),n.info(`Output: ${a}`),e.verbose){n.debug("Generated schemas:");let p=s.map(m=>`${m.identifier?.name||"Unknown"} (${m.identifier?.kind||"unknown"})`);T(p);}}catch(i){n.error(`Failed to generate TypeSchema: ${i instanceof Error?i.message:String(i)}`),process.exit(1);}}};var ie=I({prefix:"typeschema"}),je={command:"typeschema [subcommand]",describe:"TypeSchema operations - generate, validate and merge schemas",builder:e=>e.command(Me).help().example("$0 typeschema generate hl7.fhir.r4.core@4.0.1","Generate TypeSchema from FHIR R4 core package"),handler:e=>{if(!e.subcommand&&e._.length===1){ie.info("Available typeschema subcommands:"),T(["generate    Generate TypeSchema files from FHIR packages"]),console.log(`
+  type:    ${i.type}${l}`)}return ce(s)}i.choices||t.derivation!=="constraint"&&r?.dryWarn("#fieldTypeNotFound",`Can't recognize element type: <${t.url}>.${n.join(".")} (pkg: '${O(t.package_meta)}'): missing type info`);}var Zt=(e,t,n,i,r,o)=>{let s,a;i.binding&&(s=Wt(t,n,i),An.has(i.type??"")&&(a=Vn(e,t,i,r)));let c=We(e,t,n,i,r);c||r?.dryWarn("#fieldTypeNotFound",`Field type not found for '${t.url}#${n.join(".")}' (${t.derivation})`);let l;i.pattern?l={kind:"pattern",type:i.pattern.type,value:i.pattern.value}:i.fixed&&(l={kind:"fixed",type:i.fixed.type,value:i.fixed.value});let p=o??i;if(!l&&p.elements?.coding?.slicing?.slices){let d=p.elements.coding.slicing.slices,u=Object.values(d);if(u.length>0&&u.every(m=>m.min!==void 0&&m.min>=1&&m.match&&typeof m.match=="object"&&typeof m.match.system=="string")){let m=u.flatMap(y=>y.match?[y.match]:[]);l=u.every(y=>typeof y.match.code=="string")?{kind:"fixed",type:"CodeableConcept",value:{coding:m}}:{kind:"pattern",type:"CodeableConcept",value:{coding:m},validateOnly:true};}}return {type:c,required:sr(e,t,n),excluded:ar(e,t,n),reference:qs(e,t,i),array:i.array||false,min:i.min,max:i.max,choices:i.choices,choiceOf:i.choiceOf,binding:s,enum:a,valueConstraint:l,mustSupport:i.mustSupport}};function Xt(e,t,n,i){return {type:Kt(e,t,n),array:i.array||false,required:sr(e,t,n),excluded:ar(e,t,n)}}var ea=(e,t,n,i)=>{let r=e.resolveFs(t.package_meta,n);if(!r?.elements)return;let o=[];for(let[s,a]of Object.entries(r.elements)){if(a.choiceOf!=="value"&&!s.startsWith("value"))continue;let c=We(e,r,[s],a,i);c&&o.push(c);}return fe(o)},ta=(e,t,n)=>{let i=[];if(!t.elements)return i;for(let[r,o]of Object.entries(t.elements)){if(!r.startsWith("extension:"))continue;let s=r.split(":")[1];if(!s)continue;let a;for(let[c,l]of Object.entries(o.elements??{}))if(!(l.choiceOf!=="value"&&!c.startsWith("value"))&&(a=We(e,t,[r,c],l,n),a))break;i.push({name:s,url:o.url??s,valueFieldType:a,min:o.min,max:o.max!==void 0?String(o.max):void 0});}return i},na=(e,t,n)=>{let i=[],o=t.elements?.extension?.slicing?.slices;if(!o||typeof o!="object")return i;for(let[s,a]of Object.entries(o)){let c=a,l=c.schema;if(!l)continue;let p;for(let[d,u]of Object.entries(l.elements??{})){let f=u;if(!(f.choiceOf!=="value"&&!d.startsWith("value"))&&(p=We(e,t,[d],f,n),p))break}i.push({name:s,url:c.match?.url??s,valueFieldType:p,min:l._required?1:l.min??0,max:l.max!==void 0?String(l.max):l.array?"*":"1"});}return i},ia=(e,t,n,i)=>{let r=e.resolveFs(t.package_meta,n);if(!r?.elements)return;let o=ta(e,r,i),s=na(e,r,i),a=[...o,...s];return a.length>0?a:void 0},lr=(e,t,n)=>{let i=[],r=(c,l,p)=>{let d=p.url,u=d?ea(e,t,d,n):void 0,f=d?ia(e,t,d,n):void 0;if(!d){let x=t.elements?.extension?.slicing?.slices?.[l]?.schema;if(x){d=x.elements?.url?.fixed?.value??l;for(let[k,$]of Object.entries(x.elements??{})){let q=$;if(q.choiceOf==="value"||k.startsWith("value")){let _e=We(e,t,[k],q,n);if(_e){u=[_e];break}}}}}let m=f&&f.length>0,g=d?e.resolveFs(t.package_meta,d):void 0,y=g?ce(g):void 0,h=[...c,"extension"].join(".");i.push({name:l,path:h,url:d,profile:y,min:p.min,max:p.max!==void 0?String(p.max):void 0,mustSupport:p.mustSupport,valueFieldTypes:u,subExtensions:f,isComplex:m,nameCandidates:er({name:l,path:h})});},o=(c,l)=>{if(l.extensions)for(let[p,d]of Object.entries(l.extensions))r(c,p,d);if(l.elements)for(let[p,d]of Object.entries(l.elements))o([...c,p],d);};o([],t);let s=new Set,a=i.filter(c=>{let l=`${c.url}:${c.path}`;return s.has(l)?false:(s.add(l),true)});return a.length===0?void 0:a};function ra(e,t,n,i,r){if(!i)return {};let o={},s={};for(let a of e.getAllElementKeys(i)){let c=[...n,a],l=e.resolveElementSnapshot(t,c);wn(e,t,c,l,i[a])?o[a]=Xt(e,t,c,l):o[a]=Zt(e,t,c,l,r,i[a]);let p=Yt(a,l);p&&(s[a]=p);}return {fields:o,slicing:Object.keys(s).length>0?s:void 0}}function oa(e){let t=[];for(let n of Object.values(e))"type"in n&&n.type&&t.push(n.type),"binding"in n&&n.binding&&t.push(n.binding);return t}async function dr(e,t,n){if(!t.url)throw new Error("ValueSet URL is required");let i=Jt(e,t.package_meta,t.url),r=at(e,t.package_meta,t.url);return {identifier:i,description:t.description,concept:r,compose:r?void 0:t.compose}}var fr=(e,t,n)=>{let i=[];return e&&i.push(e),t&&i.push(...oa(t)),n&&i.push(...or(n)),i},en=(e,t,n,i)=>{let o=fr(t,n,i).filter(s=>!(s.url===e.url||L(s)));return fe(o)},Un=(e,t,n,i)=>{let o=fr(t,n,i).filter(s=>s.url!==e.url);return fe(o)};function ur(e,t,n){let i;if(t.base){let p=e.ensureSpecializationCanonicalUrl(t.base),d=e.resolveFs(t.package_meta,p),u=t.kind==="logical"&&t.derivation==="specialization"&&Dn(t.base);if(!d&&!u)throw new Error(`Base resource not found '${t.base}' for <${t.url}> from ${O(t.package_meta)}`);if(d){let f=ce(d);xe(!L(f),`Unexpected nested base for ${t.url}`),i=f;}}let{fields:r,slicing:o}=ra(e,t,[],t.elements,n),s=rr(e,t,n),a=Qi(e,t,n);if(t.derivation==="constraint"){let p=ce(t);if(!i)throw new Error(`Profile ${t.url} must have a base type`);let d=lr(e,t,n),u=d?.flatMap(Pt),f=Un(p,i,r,s),m={identifier:p,base:i,fields:r,slicing:o,nested:s,description:t.description,dependencies:fe(f,u),extensions:d};return nr(m),[m,...a]}if(t.kind==="primitive-type"){let p=ce(t);return xe(i,`Primitive type ${t.url} must have a base type`),[{identifier:p,description:t.description,base:i,dependencies:en(p,i,r,s)},...a]}let c=ce(t);return [{identifier:c,base:i,fields:r,slicing:o,nested:s,description:t.description,dependencies:en(c,i,r,s),typeFamily:void 0},...a]}var sa=(e,t,n)=>{let i={};for(let s of e){let a=`${s.schema.identifier.url}|${s.schema.identifier.package}`,c=kt(s.schema);i[a]??={},i[a][c]??={typeSchema:s.schema,sources:[]},i[a][c].sources.push(s);}let r=[],o={};for(let s of Object.values(i)){let a=Object.entries(s).map(([l,p])=>({...p,schemaHash:l,sources:[...p.sources].sort(ot)})).sort(Ut),c=a[0];if(c)if(a.length>1){let l=c.typeSchema.identifier.url,p=c.typeSchema.identifier.package,d=t?.[l];if(d){let u=a.flatMap(m=>m.sources),f=a.find(m=>m.sources.some(g=>g.sourceCanonical===d.canonical&&g.sourcePackage===d.package));f?r.push(f.typeSchema):(n?.dryWarn("#resolveCollisionMiss",`'${l}': preferred source '${d.canonical}' from '${d.package}' not found among variants: ${u.map(m=>`${m.sourceCanonical} (${m.sourcePackage})`).join(", ")}`),r.push(c.typeSchema));}else n?.dryWarn("#duplicateSchema",`'${l}' from '${p}' has ${a.length} versions`),r.push(c.typeSchema);o[p]??={},o[p][l]=a.flatMap(u=>u.sources.map(f=>({typeSchema:u.typeSchema,sourcePackage:f.sourcePackage,sourceCanonical:f.sourceCanonical})));}else r.push(c.typeSchema);}return {schemas:r,collisions:o}},tn=async(e,t,n)=>{let i=[];for(let r of e.allFs()){let o=O(r.package_meta);for(let s of ur(e,r,n))i.push({schema:s,sourcePackage:o,sourceCanonical:r.url});}for(let r of e.allVs())i.push({schema:await dr(e,r),sourcePackage:O(r.package_meta),sourceCanonical:r.url});return sa(i,t,n)};var mr=(e,t)=>{let n=Object.fromEntries(Object.entries(t).map(([l,p])=>[l,new Set(p)])),i=l=>`${l.package}-${l.version}-${l.kind}-${l.url}`,r=Object.fromEntries(e.schemas.map(l=>{if(n[l.identifier.package]?.has(l.identifier.url)){if(!je(l))throw new Error(`Unexpected schema kind: ${JSON.stringify(l.identifier)}`);return [i(l.identifier),{...l.identifier,kind:"resource"}]}}).filter(l=>l!==void 0)),o=l=>r[i(l)]||l,s=l=>{if(l)return Object.fromEntries(Object.entries(l).map(([p,d])=>b(d)?[p,d]:[p,{...d,type:d.type?o(d.type):void 0}]))},a=e.schemas.map(l=>{if($t(l)||Ft(l))return l;let p=JSON.parse(JSON.stringify(l));return p.identifier=o(p.identifier),p.dependencies=p.dependencies?.map(o),(_(p)||V(p))&&(p.fields=s(p.fields),p.nested=p.nested?.map(d=>({...d,base:o(d.base),fields:s(d.fields)}))),p}),c=e.replaceSchemas(a);return c.irReport().logicalPromotion={packages:Object.fromEntries(Object.entries(t).map(([l,p])=>[l,{promotedCanonicals:[...p].sort()}]))},c};var aa=(e,t)=>{let n={},i={};for(let r of t){let o=e.fields?.[r];if(!e.fields||!o)throw new Error(`Field ${r} not found`);if(b(o))i[r]||(i[r]={}),i[r].declaration=o.choices;else if(A(o)){let s=o.choiceOf;i[s]||(i[s]={}),i[s].instances=[...i[s].instances??[],r];}else n[r]=o;}for(let[r,{declaration:o,instances:s}]of Object.entries(i)){let a=s??o;xe(a);for(let l of a){let p=e.fields?.[l];xe(p),n[l]=p;}let c=e.fields?.[r];xe(c),n[r]={...c,choices:a};}e.fields=n;},ca=(e,t)=>{for(let n of t){let i=e.fields?.[n];if(!e.fields||!i)throw new Error(`Field ${n} not found`);if(e.fields){if(b(i))for(let r of i.choices)delete e.fields[r];if(A(i)){let r=e.fields[i.choiceOf];xe(b(r)),r.choices=r.choices.filter(o=>o!==n),r.choices.length===0&&delete e.fields[i.choiceOf];}delete e.fields[n];}}},la=(e,t)=>{if(e.extensions){for(let n of t)if(!e.extensions.some(i=>i.url===n))throw new Error(`Extension ${n} not found in profile ${e.identifier.url}`);e.extensions=e.extensions.filter(n=>!n.url||!t.includes(n.url)),e.extensions.length===0&&(e.extensions=void 0);}},pa=(e,t,n)=>{let i=Object.keys(t.schemasByPackage),r=Object.keys(n.schemasByPackage),o=i.filter(s=>!r.includes(s));e.skippedPackages=o;for(let[s,a]of Object.entries(n.schemasByPackage)){if(o.includes(s))continue;let c=t.schemasByPackage[s];xe(c),e.packages[s]={skippedCanonicals:c.filter(l=>!a.includes(l)).map(l=>l.identifier.url).sort(),canonicals:Object.fromEntries(a.map(l=>{let p=t.resolve(l.identifier);if(xe(p),!_(p)||(xe(_(l)),!p.fields))return;if(!l.fields)return [l.identifier.url,Object.keys(p.fields)];let d=Object.keys(l.fields),u=Object.keys(p.fields).filter(f=>!d.includes(f)).sort();if(u.length!==0)return [l.identifier.url,{skippedFields:u}]}).filter(l=>l!==void 0))};}},da=(e,t,n)=>{if(e=JSON.parse(JSON.stringify(e)),$t(e)||Ft(e)||gi(e)||te(e))return e;if(t.selectFields){if(t.ignoreFields)throw new Error("Cannot use both ignoreFields and selectFields in the same rule");aa(e,t.selectFields);}if(t.ignoreFields){if(t.selectFields)throw new Error("Cannot use both ignoreFields and selectFields in the same rule");ca(e,t.ignoreFields);}if(V(e)&&t.ignoreExtensions&&la(e,t.ignoreExtensions),e.slicing){let i=Object.fromEntries(Object.entries(e.slicing).filter(([r])=>e.fields?.[r]));e.slicing=Object.keys(i).length>0?i:void 0;}if(e.nested){let i=new Set,r=o=>{Object.values(o.fields??{}).filter(j).filter(s=>L(s.type)).forEach(s=>{let a=s.type.url;if(!i.has(a)){i.add(a);let c=e.nested?.find(l=>l.identifier.url===a);xe(c),r(c);}});};r(e),e.nested=e.nested.filter(o=>i.has(o.identifier.url));}if(V(e)){let i=e.extensions?.flatMap(Pt);e.dependencies=fe(Un(e.identifier,e.base,e.fields,e.nested),i);}else xe(!L(e.identifier)),e.dependencies=en(e.identifier,e.base,e.fields,e.nested);return e},fa=e=>!_(e)&&!V(e)?[]:[e.fields,...(e.nested??[]).map(n=>n.fields)].flatMap(n=>Object.values(n??{}).filter(j).flatMap(i=>[...i.reference?.resource??[],...i.reference?.profiles??[]]).filter(i=>!L(i))),gr=(e,t,n)=>{let i=[],r=[];for(let[d,u]of Object.entries(t))for(let[f,m]of Object.entries(u)){let g=e.resolveByUrl(d,f);if(!g||he(g))throw new Error(`Schema not found for ${d} ${f}`);let y=da(g,m);if(i.push(y),m.followReferences??n?.followReferences)for(let h of fa(y)){let x=e.resolve(h);if(!x)throw new Error(`Reference target ${JSON.stringify(h)} not found for ${d} ${f}`);r.push(x);}}let o=new Set(i.map(d=>JSON.stringify(d.identifier)));for(let d of r)o.has(JSON.stringify(d.identifier))||i.push(d);let s=(d,u)=>{if(d.length===0)return Object.values(u);for(let m of d)u[JSON.stringify(m.identifier)]=m;let f=[];for(let m of d)if(_(m)||V(m)){if(!m.dependencies)continue;m.dependencies.forEach(g=>{if(L(g))return;let y=e.resolve(g);if(!y)throw new Error(`Dependent schema ${JSON.stringify(g)} not found for ${JSON.stringify(m.identifier)}`);let h=JSON.stringify(y.identifier);u[h]||f.push(y);});}return s(f,u)},a=s(i,{}),c=e.replaceSchemas(a),l={skippedPackages:[],packages:{}},p=c.irReport();return p.treeShake=l,pa(l,e,c),c};var Re=e=>{let t=e.replace(/[^a-zA-Z0-9\-_.@#()]/g,"");return t.length===0?"unknown":t},yr=(e,t)=>{let n=Re(e.identifier.package),i=te(e)?".snapshot":"",r=Re(`${e.identifier.name}(${se(e.identifier.url)})`)+i;return {filename:w.join(n,r),genContent:()=>JSON.stringify(e,null,t?2:void 0)}},hr=(e,t)=>{let n=Re(e.package_meta.name),i=Re(`${e.name}(${se(e.url)})`);return {filename:w.join(n,i),genContent:()=>JSON.stringify(e,null,t?2:void 0)}},Sr=(e,t)=>{let n=Re(e.package_name??"unknown"),i=Re(`${e.name}(${se(e.url)})`);return {filename:w.join(n,i),genContent:()=>JSON.stringify({...e,id:void 0},null,t?2:void 0)}},nn=class extends ye{async generate(t){if(this.logger()?.info("IntrospectionWriter: Begin"),this.opts.typeTree&&(await this.writeTypeTree(t),this.logger()?.info(`IntrospectionWriter: Type tree written to ${this.opts.typeTree}`)),this.opts.typeSchemas){let i=typeof this.opts.typeSchemas=="string"?{target:this.opts.typeSchemas}:this.opts.typeSchemas,r=i.profileSnapshots?[...t.schemas,...t.collectSnapshotProfiles()]:t.schemas;if(w.extname(i.target)===".ndjson")await this.writeNdjson(r,i.target,yr);else {let o=r.map(c=>yr(c,true)),s=new Set,a=o.filter(c=>s.has(c.filename)?false:(s.add(c.filename),true));this.cd(i.target,()=>{for(let{filename:c,genContent:l}of a){let p=`${c}.json`;this.cd(w.dirname(p),()=>{this.cat(w.basename(p),()=>{this.write(l());});});}for(let[c,l]of Object.entries(t.irReport().collisions??{}))this.cd(`${Re(c)}`,()=>{for(let[p,d]of Object.entries(l)){if(d.length<=1)continue;let u=d[0];xe(u);let f=Re(`${u.typeSchema.identifier.name}(${se(p)})`);this.cd(w.join("collisions",f),()=>{for(let m=0;m<d.length;m++){let g=d[m];this.cat(`${m+1}.json`,()=>{this.write(JSON.stringify(g,null,2));});}});}});});}this.logger()?.info(`IntrospectionWriter: ${r.length} TypeSchema written to ${i.target}`);}let n=new Set(t.schemas.map(i=>i.identifier.url));if(this.opts.fhirSchemas&&t.register){let i=this.opts.fhirSchemas,r=t.register.allFs(),o=new Set,s=r.filter(a=>!n.has(a.url)||o.has(a.url)?false:(o.add(a.url),true));w.extname(i)===".ndjson"?await this.writeNdjson(s,i,hr):await this.writeJsonFiles(s.map(a=>hr(a,true)),i),this.logger()?.info(`IntrospectionWriter: ${s.length} FHIR schema written to ${i}`);}if(this.opts.structureDefinitions&&t.register){let i=this.opts.structureDefinitions,r=t.register.allSd(),o=new Set,s=r.filter(a=>!n.has(a.url)||o.has(a.url)?false:(o.add(a.url),true));w.extname(i)===".ndjson"?await this.writeNdjson(s,i,Sr):await this.writeJsonFiles(s.map(a=>Sr(a,true)),i),this.logger()?.info(`IntrospectionWriter: ${s.length} StructureDefinitions written to ${i}`);}}async writeNdjson(t,n,i){this.cd(w.dirname(n),()=>{this.cat(w.basename(n),()=>{for(let r of t){let{genContent:o}=i(r,false);this.write(`${o()}
+`);}});});}async writeJsonFiles(t,n){this.cd(n,()=>{for(let{filename:i,genContent:r}of t){let o=`${i}.json`;this.cd(w.dirname(o),()=>{this.cat(w.basename(o),()=>{this.write(r());});});}});}async writeTypeTree(t){let n=this.opts.typeTree;if(!n)return;let i=t.entityTree(),r=n.endsWith(".yaml")?vi__default.stringify(i):JSON.stringify(i,void 0,2),o=w.dirname(n),s=w.basename(n);this.cd(o,()=>{this.cat(s,()=>{this.write(r);});});}};var ga=(e,t)=>{e.push("## Skipped Packages","");for(let n of [...t].sort())e.push(`- ${n}`);e.push("");},ya=(e,t,n,i)=>{if(e.push(`## Package: \`${t}\``,""),i?.length){e.push("### Promoted Logical Models","");for(let o of i)e.push(`- \`${o}\``);e.push("");}if(!n)return;let r=Object.entries(n.canonicals).filter(([o,s])=>s.skippedFields.length>0);if(r.length>0){e.push("### Modified Canonicals","");for(let[o,s]of r){e.push(`#### \`${o}\``,""),e.push("Skipped fields:","");for(let a of s.skippedFields)e.push(`- \`${a}\``);e.push("");}}if(n.skippedCanonicals.length>0){e.push("### Skipped Canonicals","");for(let o of n.skippedCanonicals)e.push(`- \`${o}\``);e.push("");}},ha=(e,t)=>{let n=new Map;for(let o of e){let s=kt(o.typeSchema);n.has(s)||n.set(s,[]),n.get(s)?.push(o);}let i=[...n.entries()].map(([o,s])=>({entries:[...s].sort(ot),schemaHash:o,sources:s})).sort(Ut).map(o=>o.entries),r=(o,s)=>t?o.some(a=>a.sourceCanonical===t.canonical&&a.sourcePackage===t.package)?"selected":void 0:s===0?"auto":void 0;return i.map((o,s)=>({entries:o,mark:r(o,s)}))},Sa={selected:" (selected)",auto:" (auto)"},Ta=e=>{let t=1;return e.map(n=>{let i=n.entries.map(o=>`${se(o.sourceCanonical)??o.sourceCanonical} (${o.sourcePackage})`).sort().join(", "),r=n.mark?Sa[n.mark]:"";return `  - Version ${t++}${r}: ${i}`})},xa=(e,t,n)=>{if(!t)return;e.push("## Schema Collisions",""),e.push("The following canonicals have multiple schema versions with different content."),e.push("To inspect collision versions, export TypeSchemas using `.introspection({ typeSchemas: 'path' })`"),e.push("and check `<pkg>/collisions/<name>/1.json, 2.json, ...` files.","");let i=[],r=Object.keys(t).sort();for(let o of r){let s=t[o];if(!s)throw new Error(`Missing collisions for package ${o}`);let a=Object.entries(s).sort(([c],[l])=>{let p=c.split("/").pop()??c,d=l.split("/").pop()??l;return p.localeCompare(d)});if(a.length>0){e.push(`### \`${o}\``,"");for(let[c,l]of a){let p=ha(l,n?.[c]),d=Ta(p);e.push(`- \`${c}\` (${p.length} versions)`),e.push(...d),l[0]&&i.push({url:c,firstSource:l[0]});}e.push("");}}if(i.length>0){let o=i.filter(s=>!n?.[s.url]);if(o.length>0){e.push("### Suggested `resolveCollisions` config",""),e.push("Add to `.typeSchema({ resolveCollisions: { ... } })` to resolve remaining collisions:",""),e.push("```typescript"),e.push(".typeSchema({"),e.push("    resolveCollisions: {");for(let{url:s,firstSource:a}of o)e.push(`        "${s}": {`),e.push(`            package: "${a.sourcePackage}",`),e.push(`            canonical: "${a.sourceCanonical}",`),e.push("        },");e.push("    },"),e.push("})"),e.push("```","");}}},Tr=e=>{let t=["# IR Report",""],n=[...new Set([...Object.keys(e.treeShake?.packages??{}),...Object.keys(e.logicalPromotion?.packages??{})])].sort(),i=n.length>0||(e.treeShake?.skippedPackages.length??0)>0,r=Object.keys(e.collisions??{}).length>0;if(!i&&!r)return t.push("No IR modifications applied."),t.join(`
+`);e.treeShake?.skippedPackages.length&&ga(t,e.treeShake.skippedPackages);for(let o of n)ya(t,o,e.treeShake?.packages[o],e.logicalPromotion?.packages[o]?.promotedCanonicals);return r&&xa(t,e.collisions,e.resolveCollisions),t.join(`
+`)};var rn=class extends ye{async generate(t){let n=t.irReport(),i=Tr(n);this.cd("/",()=>{this.cat(this.opts.rootReadmeFileName,()=>{this.write(i);});});}};var on=class{constructor(t){this.mode=t;}mode;apply(t){return this._addDebug(t)}_addDebug(t){if(Array.isArray(t))return t.map(n=>this._addDebug(n));if(t!==null&&typeof t=="object"){let n=t,i={},r=JSON.stringify(n,null,this.mode==="FORMATTED"?2:void 0);for(let[o,s]of Object.entries(n))i[o]=this._addDebug(s);return i.debug=r,i}return t}};var sn=class{constructor(t){this.nameGenerator=t;this.lambda={saveTypeName:()=>(n,i)=>this.nameGenerator.generateType(i(n)),saveEnumValueName:()=>(n,i)=>this.nameGenerator.generateEnumValue(i(n)),saveFieldName:()=>(n,i)=>this.nameGenerator.generateField(i(n)),camelCase:()=>(n,i)=>de(i(n)),snakeCase:()=>(n,i)=>P(i(n)),pascalCase:()=>(n,i)=>z(i(n)),kebabCase:()=>(n,i)=>xt(i(n)),lowerCase:()=>(n,i)=>i(n).toLowerCase(),upperCase:()=>(n,i)=>i(n).toUpperCase()};}nameGenerator;lambda;apply(t){return {...t,lambda:this.lambda}}};var an=class{constructor(t,n,i,r){this.keywords=t;this.typeMap=n;this.nameTransformations=i;this.unsaveCharacterPattern=r;}keywords;typeMap;nameTransformations;unsaveCharacterPattern;_replaceUnsaveChars(t){let n=this.unsaveCharacterPattern instanceof RegExp?this.unsaveCharacterPattern:new RegExp(this.unsaveCharacterPattern,"g");return t.replace(n,"_")}_applyNameTransformations(t,n){for(let i of this.nameTransformations.common)t=t.replace(i.pattern instanceof RegExp?i.pattern:new RegExp(i.pattern,"g"),i.format);for(let i of n)t=t.replace(i.pattern instanceof RegExp?i.pattern:new RegExp(i.pattern,"g"),i.format);return t}_generateTypeName(t){if(this.typeMap[t])t=this.typeMap[t];else {if(t=this._applyNameTransformations(t,this.nameTransformations.type),t=t.charAt(0).toUpperCase()+t.slice(1),this.keywords.has(t))return `_${t}`;t=this._replaceUnsaveChars(t);}return t}generateEnumType(t){return this._generateTypeName(t)}_generateTypeFromTypeRef(t){return t.kind==="primitive-type"?this._generateTypeName(t.name):this._generateTypeName(t.url.split("/").pop()?.split("#").map(n=>n.charAt(0).toUpperCase()+n.slice(1)).join("")??"<UNKNOWN>")}generateFieldType(t){return t.enum?this.generateEnumType(t.binding?.name??t.type.name):this._generateTypeFromTypeRef(t.type)}generateType(t){return typeof t=="string"?this._generateTypeName(t):"url"in t?this._generateTypeFromTypeRef(t):this._generateTypeFromTypeRef(t.identifier)}generateField(t){return t=this._applyNameTransformations(t,this.nameTransformations.field),this.keywords.has(t)?`_${t}`:(t=this._replaceUnsaveChars(t),t)}generateEnumValue(t){return t=this._applyNameTransformations(t,this.nameTransformations.enumValue),this.keywords.has(t)?`_${t}`:(t=this._replaceUnsaveChars(t).toUpperCase(),t)}};var cn=class{templateBaseDir;templateCache={};constructor(t){this.templateBaseDir=w__default.resolve(t);}_normalizeName(t){return t.endsWith(".mustache")?t:`${t}.mustache`}read(t){return this.readTemplate(t.source)}readTemplate(t){let n=this._normalizeName(t);return this.templateCache[n]||(this.templateCache[n]=U__default.readFileSync(w__default.join(this.templateBaseDir,n),"utf-8")),this.templateCache[n]}};var ln=class e{static _array(t){return Array.isArray(t)?t:Array.from(t)}apply(t){return this._addListElementInformation(t)}_addListElementInformation(t){if(Array.isArray(t)||t instanceof Set)return e._array(t).map((n,i,r)=>typeof n=="object"&&n!==null?{...this._addListElementInformation(n),"-index":i,"-length":r.length,"-first":i===0,"-last":i===r.length-1}:n);if(t!==null&&typeof t=="object"){let n=t,i={};for(let[r,o]of Object.entries(n))i[r]=this._addListElementInformation(o);return i}return t}};var Cr=["boolean","instant","time","date","dateTime","decimal","integer","unsignedInt","positiveInt","integer64","base64Binary","uri","url","canonical","oid","uuid","string","code","markdown","id","xhtml"];var pn=class{constructor(t,n,i){this.tsIndex=t;this.nameGenerator=n;this.filterPred=i;}tsIndex;nameGenerator;filterPred;arrayMixinProvider=new ln;createUtility(){return this._createForRoot()}createComplexType(t,n={resourcesByUri:{},complexTypesByUri:{}}){let i=this._createForComplexType(t,n),r=this._createParentsFor(i.schema,n),o=this._createChildrenFor(t,n),s=r.flatMap(a=>a.fields);return this.arrayMixinProvider.apply({...this._createForRoot(),...i,parents:r,children:o,inheritedFields:s,allFields:[...i.fields,...r.flatMap(a=>a.fields)],hasChildren:o.length>0,hasParents:r.length>0,hasInheritedFields:s.length>0})}createResource(t,n={resourcesByUri:{},complexTypesByUri:{}}){let i=this._createForResource(t,n),r=this._createParentsFor(i.schema,n),o=this._createChildrenFor(t,n),s=r.flatMap(a=>a.fields);return this.arrayMixinProvider.apply({...this._createForRoot(),...i,parents:r,children:o,inheritedFields:s,allFields:[...i.fields,...s],hasChildren:o.length>0,hasParents:r.length>0,hasInheritedFields:s.length>0})}_createFor(t,n,i){if(t.kind==="complex-type")return this._createForComplexType(t,n,i);if(t.kind==="resource")return this._createForResource(t,n,i);throw new Error(`Unknown type ${t.kind}`)}_createForComplexType(t,n,i){let r=this.tsIndex.resolveType(t);if(!r)throw new Error(`ComplexType ${t.name} not found`);Object.hasOwn(n.complexTypesByUri,r.identifier.url)||(n.complexTypesByUri[r.identifier.url]=this._createTypeViewModel(r,n,i));let o=n.complexTypesByUri[r.identifier.url];if(!o)throw new Error(`ComplexType ${t.name} not found`);return o}_createForResource(t,n,i){let r=this.tsIndex.resolveType(t);if(!r)throw new Error(`Resource ${t.name} not found`);Object.hasOwn(n.resourcesByUri,r.identifier.url)||(n.resourcesByUri[r.identifier.url]=this._createTypeViewModel(r,n,i));let o=n.resourcesByUri[r.identifier.url];if(!o)throw new Error(`Resource ${t.name} not found`);return o}_createChildrenFor(t,n,i){let r=this.tsIndex.resolveType(t);return r?It(r)?(r.typeFamily?.complexTypes??[]).filter(this.filterPred).map(o=>this._createFor(o,n,i)):ee(r)?(r.typeFamily?.resources??[]).filter(this.filterPred).map(o=>this._createFor(o,n,i)):[]:[]}_createParentsFor(t,n){let i=[],r="base"in t?t.base:void 0;for(;r;){i.push(this._createFor(r,n,void 0));let o=this.tsIndex.resolveType(r);r=o&&"base"in o?o.base:void 0;}return i}_createForNestedType(t,n,i){let r=this._createTypeViewModel(t,n,i),o=this._createParentsFor(t,n),s=this._createChildrenFor(t.identifier,n,i),a=o.flatMap(c=>c.fields);return {...r,parents:o,children:s,inheritedFields:a,allFields:[...r.fields,...a],hasChildren:s.length>0,hasParents:o.length>0,hasInheritedFields:a.length>0}}_createTypeViewModel(t,n,i){let r=Object.entries(("fields"in t?t.fields:{})??{}),o=this._collectNestedComplex(t,n),s=this._collectNestedEnums(r),a=this._collectDependencies(t),c={name:t.identifier.name,saveName:this.nameGenerator.generateType(t)};return {nestedComplexTypes:o,nestedEnums:s,dependencies:a,isNested:!!i,schema:t,...c,isResource:this._createIsResource(t.identifier),isComplexType:this._createIsComplexType(t.identifier),hasFields:r.length>0,hasNestedComplexTypes:o.length>0,hasNestedEnums:s.length>0,fields:r.filter(l=>j(l[1])).sort((l,p)=>l[0].localeCompare(p[0])).map(([l,p])=>({owner:c,schema:p,name:l,saveName:this.nameGenerator.generateField(l),typeName:this.nameGenerator.generateFieldType(p),isArray:p.array??false,isRequired:p.required??false,isEnum:!!p.enum&&!p.enum.isOpen,isSizeConstrained:p.min!==void 0||p.max!==void 0,min:p.min,max:p.max,isResource:this._createIsResource(p.type),isComplexType:this._createIsComplexType(p.type),isPrimitive:this._createIsPrimitiveType(p.type),isCode:p.type?.name==="code",isIdentifier:p.type?.name==="Identifier",isReference:p.type?.name==="Reference"}))}}_collectDependencies(t){let n={resources:[],complexTypes:[]};return "dependencies"in t&&t.dependencies&&(t.dependencies.filter(i=>i.kind==="complex-type").map(i=>({name:i.name,saveName:this.nameGenerator.generateType(i)})).forEach(i=>{n.complexTypes.push(i);}),t.dependencies.filter(i=>i.kind==="resource").map(i=>({name:i.name,saveName:this.nameGenerator.generateType(i)})).forEach(i=>{n.resources.push(i);})),"nested"in t&&t.nested&&t.nested.map(i=>this._collectDependencies(i)).forEach(i=>{i.complexTypes.filter(r=>!n.complexTypes.some(o=>o.name===r.name)).forEach(r=>{n.complexTypes.push(r);}),i.resources.filter(r=>!n.resources.some(o=>o.name===r.name)).forEach(r=>{n.resources.push(r);});}),n}_createIsResource(t){return t.kind!=="resource"?false:Object.fromEntries(this.tsIndex.collectResources().map(n=>n.identifier).map(n=>[`is${n.name.charAt(0).toUpperCase()+n.name.slice(1)}`,n.url===t.url]))}_createIsComplexType(t){return t.kind!=="complex-type"&&t.kind!=="nested"?false:Object.fromEntries(this.tsIndex.collectComplexTypes().map(n=>n.identifier).map(n=>[`is${n.name.charAt(0).toUpperCase()+n.name.slice(1)}`,n.url===t.url]))}_createIsPrimitiveType(t){return t.kind!=="primitive-type"?false:Object.fromEntries(Cr.map(n=>[`is${n.charAt(0).toUpperCase()}${n.slice(1)}`,t.name===n]))}_collectNestedComplex(t,n){let i=[];return "nested"in t&&t.nested&&t.nested.map(r=>this._createForNestedType(r,n,t)).forEach(r=>{i.push(r);}),i}_collectNestedEnums(t){let n={};return t.forEach(([i,r])=>{if("enum"in r&&r.enum&&!r.enum.isOpen){let o=("binding"in r&&r.binding?.name)??i;typeof o=="string"&&(n[o]=n[o]??new Set,r.enum.values.forEach(n[o].add.bind(n[o])));}}),Object.entries(n).map(([i,r])=>({name:i,saveName:this.nameGenerator.generateEnumType(i),values:Array.from(r).map(o=>({name:o,saveName:this.nameGenerator.generateEnumValue(o)}))}))}_createForRoot(){return this.arrayMixinProvider.apply({complexTypes:this.tsIndex.collectComplexTypes().map(t=>t.identifier).map(t=>({name:t.name,saveName:this.nameGenerator.generateType(t)})),resources:this.tsIndex.collectResources().map(t=>t.identifier).map(t=>({name:t.name,saveName:this.nameGenerator.generateType(t)}))})}};function va(e,t){let n=w.resolve(e,"config.json");try{let i=U.readFileSync(n,"utf-8"),r=JSON.parse(i);if(r&&typeof r=="object")return r}catch{}return {}}var br=(e,t)=>{let n={debug:"OFF",hooks:{},meta:{},keywords:[],unsaveCharacterPattern:/[^a-zA-Z0-9]/g,nameTransformations:{common:[],enumValue:[],type:[],field:[]},renderings:{utility:[],resource:[],complexType:[]},shouldRunHooks:true,primitiveTypeMap:{}},i=va(e),r={...n,...t,...i,sources:{staticSource:w.resolve(e,"static"),templateSource:w.resolve(e,"templates")}};return new zn(r)};function Ra(e,t=[],n={}){return new Promise((i,r)=>{let o=spawn(e,t,{stdio:"inherit",...n});o.on("error",r),o.on("close",s=>{s===0?i(s):r(new Error(`Prozess beendet mit Fehlercode ${s}`));});})}var zn=class extends ye{templateFileCache;nameGenerator;lambdaMixinProvider;debugMixinProvider;constructor(t){super(t),this.nameGenerator=new an(new Set(t.keywords),t.primitiveTypeMap,t.nameTransformations,t.unsaveCharacterPattern),this.templateFileCache=new cn(t.sources.templateSource),this.lambdaMixinProvider=new sn(this.nameGenerator),this.debugMixinProvider=t.debug!=="OFF"?new on(t.debug):void 0;}async generate(t){let n=new pn(t,this.nameGenerator,()=>true),i={resourcesByUri:{},complexTypesByUri:{}};t.collectComplexTypes().map(r=>r.identifier).sort((r,o)=>r.url.localeCompare(o.url)).map(r=>n.createComplexType(r,i)).forEach(this._renderComplexType.bind(this)),t.collectResources().map(r=>r.identifier).sort((r,o)=>r.url.localeCompare(o.url)).map(r=>n.createResource(r,i)).forEach(this._renderResource.bind(this)),this._renderUtility(n.createUtility()),this.opts.shouldRunHooks&&await this._runHooks(this.opts.hooks.afterGenerate);}async generateAsync(t){await super.generateAsync(t),this.copyStaticFiles();}copyStaticFiles(){if(this.opts.inMemoryOnly)return;let t=w.resolve(this.opts.sources.staticSource);if(!t)throw new Error("staticDir must be set in subclass.");U.cpSync(t,this.opts.outputDir,{recursive:true});}async _runHooks(t){for(let n of t??[])console.info(`Running hook (${this.opts.outputDir}): ${n.cmd} ${n.args?.join(" ")}`),await Ra(n.cmd,n.args??[],{cwd:this.opts.outputDir}),console.info(`Completed hook: ${n.cmd} ${n.args?.join(" ")}`);}_checkRenderingFilter(t,n){return !n.filter?.whitelist?.length&&!n.filter?.blacklist?.length?true:(n.filter?.blacklist??[]).find(i=>t.name.match(i))?false:(n.filter?.whitelist??[]).find(i=>t.name.match(i))?true:!n.filter.whitelist?.length}_renderUtility(t){this.opts.renderings.utility.forEach(n=>{this.cd(n.path,()=>{this.cat(n.fileNameFormat,()=>{this.write(this._render(t,n));});});});}_renderResource(t){this.opts.renderings.resource.filter(n=>this._checkRenderingFilter(t,n)).forEach(n=>{this.cd(n.path,()=>{this.cat(this._calculateFilename(t,n),()=>{this.write(this._render(t,n));});});});}_renderComplexType(t){this.opts.renderings.complexType.filter(n=>this._checkRenderingFilter(t,n)).forEach(n=>{this.cd(n.path,()=>{this.cat(this._calculateFilename(t,n),()=>{this.write(this._render(t,n));});});});}_calculateFilename(t,n){return kr.format(n.fileNameFormat,t.saveName)}_render(t,n){let i=this.lambdaMixinProvider.apply({meta:{timestamp:this.opts.meta.timestamp??new Date().toISOString(),generator:this.opts.meta.generator??"@atomic-ehr/codegen mustache generator"},model:t,properties:n.properties??{}});return this.debugMixinProvider&&(i=this.debugMixinProvider.apply(i)),ba.render(this.templateFileCache.read(n),i,r=>this.templateFileCache.readTemplate(r))}};var vr=new Set(["class","function","return","if","for","while","const","let","var","import","export","interface"]),ne=e=>(vr.has(e)&&(e=`${e}_`),e.replace(/\[x\]/g,"_x_").replace(/[- :.]/g,"_")),lt=e=>{if(!e)return "";let t=e.replace(/\[x\]/g,"").replace(/:/g,"_");return de(t)},Rr=e=>xt(e.replace(/[@/]/g,"_")),fn=e=>R(D(e)),Ir=e=>`${fn(e)}.ts`,qe=(e,t=true)=>{if(!e)return;let n=se(e,t);if(n)return ne(n)},D=e=>{if(e.kind==="nested"){let n=e.url,i=se(n,false);if(!i)return "";let[r,o]=i.split("#"),s=De((o??"").split(".")).join("");return ne([r,s].join(""))}let t=e.name.includes("/")?se(e.name)??e.name:e.name;return 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if";this.line(`${o} (${i.cond}) {`),this.indent(),i.body(),this.deindent();}),n&&(this.line("} else {"),this.indent(),n(),this.deindent()),this.line("}");}tsImport(t,...n){let i=n[n.length-1],r=typeof i=="object"?i.typeOnly:false,o=typeof i=="object"?n.slice(0,-1):n,s=r?"import type":"import",a=this.moduleSpecifier(t),c=`${s} { ${o.join(", ")} } from "${a}"`;c.length<=(this.opts.lineWidth??120)?this.lineSM(c):this.curlyBlock([s],()=>{for(let l of o)this.line(`${l},`);},[` from "${a}";`]);}tsExport(t,...n){let i=n[n.length-1],r=typeof i=="object"?i.typeOnly:false,o=typeof i=="object"?n.slice(0,-1):n,s=r?"export type":"export";this.lineSM(`${s} { ${o.join(", ")} } from "${this.moduleSpecifier(t)}"`);}tsExportAll(t,n){let i=n?.barrel?this.directorySpecifier(t):this.moduleSpecifier(t);this.lineSM(`export * from "${i}"`);}generateFhirPackageIndexFile(t,n=false){this.cat("index.ts",()=>{n&&this.tsExportAll("./terminology"),t.filter(te).length>0&&this.tsExportAll("./profiles",{barrel:true});let r=t.flatMap(o=>{let s=D(o.identifier),a=te(o)?[]:[s,...ee(o)&&o.nested||je(o)&&o.nested?o.nested.map(l=>D(l.identifier)):[]],c=ee(o)?[`is${s}`]:[];return [{identifier:o.identifier,tsPackageName:fn(o.identifier),resourceName:s,typeExports:a,valueExports:c}]}).sort((o,s)=>o.resourceName.localeCompare(s.resourceName));r=Array.from(new Map(r.map(o=>[o.resourceName.toLowerCase(),o])).values()).sort((o,s)=>o.resourceName.localeCompare(s.resourceName));for(let o of r){this.debugComment(o.identifier);let s=`./${o.tsPackageName}`;o.typeExports.length>0&&this.tsExport(s,...o.typeExports,{typeOnly:true}),o.valueExports.length>0&&this.tsExport(s,...o.valueExports);}});}generateDependenciesImports(t,n,i="../"){if(n.dependencies){let r=[],o=[];for(let s of n.dependencies)["complex-type","resource","logical"].includes(s.kind)?r.push({tsPackage:`${i}${this.modulePath(s)}`,name:D(s),dep:s}):o.push(s);r.sort((s,a)=>s.name.localeCompare(a.name));for(let s of r)this.debugComment(s.dep),this.tsImport(s.tsPackage,s.name,{typeOnly:true});for(let s of o)this.debugComment("skip:",s);if(this.line(),this.withPrimitiveTypeExtension(n)&&n.identifier.name!=="Element"&&n.dependencies.find(s=>s.name==="Element")===void 0){let s="http://hl7.org/fhir/StructureDefinition/Element",a=t.resolveByUrl(n.identifier.package,s);if(!a)throw new Error(`'${s}' not found for ${n.identifier.package}.`);this.tsImport(`${i}${this.modulePath(a.identifier)}`,"Element",{typeOnly:true});}}}generateComplexTypeReexports(t){let n=t.dependencies?.filter(bt);if(n&&n.length>0){for(let i of n)this.debugComment(i),this.tsExport(`../${this.modulePath(i)}`,D(i),{typeOnly:true});this.line();}}addFieldExtension(t,n){let i=ue(`_${t}`),r=n?"(Element | null)[]":"Element";this.lineSM(`${i}?: ${r}`);}generateType(t,n,i){let r,s=["Reference","Coding","CodeableConcept"].includes(n.identifier.name);s?r=`${n.identifier.name}<T extends string = string>`:r=D(n.identifier);let a=s?[]:n.generic?.params??[],c={},l={};if(!s)for(let[d,u]of Object.entries(n.fields??{})){if(b(u)||!u.type)continue;let f=t.resolveType(u.type);if(!f||rc.has(f.identifier.name))continue;let m=ue(d),g=he(f)||_(f)?f.generic?.params:void 0;if(g?.length){let y=g.map(h=>a.find(x=>Xn(x.path)===Xn(h.path))?.typeVar??h.typeVar);l[m]=`<${y.join(", ")}>`;}else if(_(f)&&(f.typeFamily?.resources?.length??0)>0){let y=a.find(h=>Xn(h.path)===d);y&&(c[m]=y.typeVar);}}if(!s&&a.length>0){let d=a.map(u=>`${u.typeVar} extends ${u.constraint.name} = ${u.constraint.name}`);r+=`<${d.join(", ")}>`;}let p;if(n.base&&(p=`extends ${qe(n.base.url)}`),this.debugComment(n.identifier),!n.fields&&!p&&!ee(n)){this.lineSM(`export type ${r} = object`);return}this.curlyBlock(["export","interface",r,p],()=>{if(ee(n)){let u=[n.identifier,...n.typeFamily?.resources??[]],f=this.opts.openResourceTypeSet&&u.length>1?" | string":"";this.lineSM(`resourceType: ${u.sort((m,g)=>m.name.localeCompare(g.name)).map(m=>`"${m.name}"`).join(" | ")}${f}`),this.line();}if(!n.fields)return;let d=Object.entries(n.fields).sort((u,f)=>u[0].localeCompare(f[0]));for(let[u,f]of d){if(b(f)||!f.type)continue;this.debugComment(u,":",f);let m=ue(u),g=Jn(n.identifier.name,m,f,void 0,c,i),y=f.required?"":"?",h=f.array?"[]":"",x=l[m]??"";this.lineSM(`${m}${y}: ${g}${x}${h}`),this.withPrimitiveTypeExtension(n)&&M(f.type)&&this.addFieldExtension(u,f.array??false);}});}withPrimitiveTypeExtension(t){if(!this.opts.primitiveTypeExtension||!_(t))return  false;for(let n of Object.values(t.fields??{}))if(!b(n)&&M(n.type))return  true;return  false}generateResourceTypePredicate(t){if(!ee(t))return;let n=D(t.identifier);this.curlyBlock(["export","const",`is${n}`,"=",`(resource: unknown): resource is ${n}`,"=>"],()=>{this.lineSM(`return resource !== null && typeof resource === "object" && (resource as {resourceType: string}).resourceType === "${t.identifier.name}"`);});}generateNestedTypes(t,n,i){if(n.nested)for(let r of n.nested)this.generateType(t,r,i),this.line();}generateResourceModule(t,n){if(te(n))this.cd("profiles",()=>{this.cat(`${$r(t,n)}`,()=>{this.generateDisclaimer(),Ur(this,t,n),zr(this,t,n);});});else if(_(n)){let i=t.isFamilyType;this.cat(`${Ir(n.identifier)}`,()=>{this.generateDisclaimer(),this.generateDependenciesImports(t,n),this.generateComplexTypeReexports(n),this.generateNestedTypes(t,n,i),this.comment("CanonicalURL:",n.identifier.url,`(pkg: ${O(Be(n))})`),this.generateType(t,n,i),this.generateResourceTypePredicate(n);});}else throw new Error(`Profile generation not implemented for kind: ${n.identifier.kind}`)}generateTerminologyTypes(t){this.cat("terminology-types.ts",()=>{this.generateDisclaimer(),t&&this.tsImport(t,"CodeSystem",{typeOnly:true}),this.line();let n=t?'CodeSystem["content"]':'("not-present" | "example" | "fragment" | "complete" | "supplement")';this.lineSM('export type TerminologyVerification = "registry-integrity" | "unverifiable" | (string & {})'),this.line(),this.curlyBlock(["type","TerminologyEntryBase","="],()=>{this.lineSM("canonicalUrl: string"),this.lineSM("packageId: string"),this.lineSM("packageVersion: string"),this.lineSM("verification: TerminologyVerification");},[";"]),this.line(),this.line("/** `contentMode` is a CodeSystem concept; the other entry kinds have none. */"),this.curlyBlock(["export","type","CodeSystemEntry","=","TerminologyEntryBase","&"],()=>{this.lineSM('resourceType: "CodeSystem"'),this.lineSM(`contentMode?: ${n}`);},[";"]),this.line(),this.curlyBlock(["export","type","ValueSetEntry","=","TerminologyEntryBase","&"],()=>{this.lineSM('resourceType: "ValueSet"');},[";"]),this.line(),this.curlyBlock(["export","type","NamingSystemEntry","=","TerminologyEntryBase","&"],()=>{this.lineSM('resourceType: "NamingSystem"');},[";"]),this.line(),this.line("/** One normalized terminology resource, discriminated by `resourceType`. */"),this.lineSM("export type TerminologyEntry = CodeSystemEntry | ValueSetEntry | NamingSystemEntry"),this.line(),this.line("/** A complete CodeSystem whose codes are embedded: the simplified runtime surface. */"),this.curlyBlock(["export","type","CodedTerminologyEntry<Code extends string = string>","=","CodeSystemEntry","&"],()=>{this.lineSM('contentMode: "complete"'),this.lineSM("codes: readonly Code[]"),this.lineSM("displays: Readonly<Partial<Record<Code, string>>>");},[";"]);});}terminologyModules=new Map;terminologyCodeIndex=new Map;prepareTerminology(t){this.terminologyModules=new Map,this.terminologyCodeIndex=new Map;for(let[n,i]of [...t].sort(([r],[o])=>r.localeCompare(o)))i.terminology&&this.prepareTerminologyModule(n,i.terminology);}prepareTerminologyModule(t,n){let{packageMeta:i}=n,r=this.opts.terminology?.packageVerification?.[H(i)]??"not-recorded",s=qi(n,r,this.logger()).slice().sort(({resource:l},{resource:p})=>{if(l.resourceType!==p.resourceType)return l.resourceType.localeCompare(p.resourceType);let d=Qn(l).localeCompare(Qn(p));if(d!==0)return d;let u=l.url.localeCompare(p.url);return u!==0?u:Hr(l).localeCompare(Hr(p))}),a=fc(s.map(({resource:l})=>l)),c=s.map(({entry:l},p)=>({entry:l,symbol:a[p]?.symbol??"Terminology"}));this.terminologyModules.set(t,c);for(let{entry:l,symbol:p}of c)"codes"in l&&!this.terminologyCodeIndex.has(l.canonicalUrl)&&this.terminologyCodeIndex.set(l.canonicalUrl,{moduleDir:t,symbol:p,codes:new Set(l.codes)});}linkFieldEnum(t,n){if(b(n)||!n.enum||n.enum.values.length===0||!n.binding)return;let i=t.resolveByUrl(n.binding.package,n.binding.url);if(!i)return;let r="concept"in i?i.concept:void 0;if(!r){let f=("dependencies"in i?i.dependencies??[]:[]).filter(y=>y.kind==="value-set"),m=f.length===1?f[0]:void 0,g=m?t.resolveByUrl(m.package,m.url):void 0;r=g&&"concept"in g?g.concept:void 0,!r&&m&&t.register&&(r=at(t.register,{name:m.package,version:m.version},m.url,this.logger()));}if(!r||r.length===0)return;let o=new Set(r.map(({code:u})=>u)),s=n.enum.values;if(s.length!==o.size||!s.every(u=>o.has(u)))return;let a=new Map;for(let u of r){if(!u.system)continue;let f=a.get(u.system)??new Set;f.add(u.code),a.set(u.system,f);}let c=[],l=new Set,p=new Map;for(let[u,f]of a){let m=this.terminologyCodeIndex.get(u);if(!m||f.size!==m.codes.size||![...f].every(y=>m.codes.has(y)))continue;c.push(`...${m.symbol}.codes`);for(let y of f)l.add(y);let g=p.get(m.moduleDir)??new Set;g.add(m.symbol),p.set(m.moduleDir,g);}if(c.length===0)return;let d=s.filter(u=>!l.has(u)).map(u=>JSON.stringify(u));return {expr:`[${[...c,...d].join(", ")}]`,imports:p}}enumTerminologyLinks(t,n){let i=new Map,r=new Map;if(this.terminologyCodeIndex.size===0)return {exprs:i,imports:r};for(let[o,s]of Object.entries(n.fields)){let a=this.linkFieldEnum(t,s);if(a){i.set(o,a.expr);for(let[c,l]of a.imports){let p=r.get(c)??new Set;for(let d of l)p.add(d);r.set(c,p);}}}return {exprs:i,imports:r}}generateTerminologyModule(t){let n=this.terminologyModules.get(t)??[];this.cat("terminology.ts",()=>{this.generateDisclaimer();let r=n.some(({entry:o})=>"codes"in o)?["TerminologyEntry","CodedTerminologyEntry"]:["TerminologyEntry"];this.tsImport("../terminology-types",...r,{typeOnly:true}),this.line(),n.forEach(({entry:o,symbol:s},a)=>{let c="codes"in o,l=s.endsWith("CodeSystem")?s.replace(oc,"Code"):`${s}Code`;if(c){let d=o.codes.map(u=>JSON.stringify(u)).join(" | ")||"never";this.lineSM(`export type ${l} = ${d}`);}let p=c?` as const satisfies CodedTerminologyEntry<${l}>;`:" as const satisfies TerminologyEntry;";this.curlyBlock(["export","const",s,"="],()=>{this.line(`canonicalUrl: ${JSON.stringify(o.canonicalUrl)},`),this.line(`packageId: ${JSON.stringify(o.packageId)},`),this.line(`packageVersion: ${JSON.stringify(o.packageVersion)},`),this.line(`verification: ${JSON.stringify(o.verification)},`),this.line(`resourceType: ${JSON.stringify(o.resourceType)},`),"contentMode"in o&&o.contentMode!==void 0&&this.line(`contentMode: ${JSON.stringify(o.contentMode)},`),c&&(this.line(`codes: [${o.codes.map(d=>JSON.stringify(d)).join(", ")}],`),this.curlyBlock(["displays:"],()=>{for(let d of o.codes){let u=o.displays[d];u!==void 0&&this.line(`${Fr(d)}: ${JSON.stringify(u)},`);}},[","]));},[p]),a<n.length-1&&this.line();});});}async generate(t){let n=[...t.collectComplexTypes(),...t.collectResources(),...t.collectLogicalModels(),...this.opts.generateProfile?t.collectSnapshotProfiles():[]],i=this.opts.terminology?.packages,r=this.opts.terminology?.enabled?(t.register?.allTerminology()??[]).filter(({packageMeta:d,resources:u})=>u.length>0&&(i===void 0||i.includes(H(d)))):[],o=new Map;for(let d of n){let u=Be(d),f=H(u),m=o.get(f)??{packageMeta:u,packageSchemas:[]};m.packageSchemas.push(d),o.set(f,m);}for(let d of r){let u=H(d.packageMeta),f=o.get(u)??{packageMeta:d.packageMeta,packageSchemas:[]};f.terminology=d,o.set(u,f);}let s=new Map;for(let[d,{packageMeta:u}]of o){let f=s.get(u.name)??[];f.push(d),s.set(u.name,f);}let a=new Map;for(let[d,{packageMeta:u,packageSchemas:f,terminology:m}]of o){let g=(s.get(u.name)?.length??0)>1?H(u):u.name,y=Jr(g),h=a.get(y)??[],k=[...new Map(f.map($=>[JSON.stringify($.identifier),$])).values()].sort(($,q)=>$.identifier.name.localeCompare(q.identifier.name));h.push({identity:d,packageSchemas:k,terminology:m}),a.set(y,h);}let c=new Map,l=new Set;for(let[d,u]of a){if(u.length!==1)continue;let f=u[0];f&&(c.set(d,f),l.add(d));}for(let[d,u]of [...a].sort(([f],[m])=>f.localeCompare(m))){if(u.length<2)continue;let f=1;for(let m of u.sort((g,y)=>g.identity.localeCompare(y.identity))){let g=`${d}--${f}`;for(;l.has(g);)f+=1,g=`${d}--${f}`;c.set(g,m),l.add(g),f+=1;}}this.packageDirectories=new Map([...c].flatMap(([d,u])=>{if(u.terminology)return [[H(u.terminology.packageMeta),d]];let f=u.packageSchemas[0];return f?[[H(Be(f)),d]]:[]}));let p=this.opts.generateProfile&&n.some(te);this.prepareTerminology(c),this.cd("/",()=>{if(p&&this.cp("profile-helpers.ts","profile-helpers.ts"),r.length>0){let d=n.find(u=>u.identifier.url==="http://hl7.org/fhir/StructureDefinition/CodeSystem");this.generateTerminologyTypes(d?`./${this.packageDir(d.identifier)}/CodeSystem`:void 0);}for(let[d,{packageSchemas:u,terminology:f}]of [...c].sort(([m],[g])=>m.localeCompare(g)))this.cd(d,()=>{for(let m of u)this.generateResourceModule(t,m);Gr(this,t,u.filter(te)),f&&this.generateTerminologyModule(d),this.generateFhirPackageIndexFile(u,f!==void 0);});});}};var mc=async(e,t)=>{t.info("Cleaning outputs...");try{t.info(`Clean ${e.outputDir}`),U.rmSync(e.outputDir,{recursive:!0,force:!0});}catch(n){t.warn(`Error cleaning output directory: ${n instanceof Error?n.message:String(n)}`);}},xn=class{options;manager;prebuiltRegister;managerInput;logger;generators=[];constructor(t={}){let r={...{outputDir:"./generated",cleanOutput:true,throwException:false},...Object.fromEntries(["outputDir","cleanOutput","throwException","typeSchema"].filter(p=>t[p]!==void 0).map(p=>[p,t[p]]))};this.managerInput={npmPackages:[],localSDs:[],localTgzPackages:[]},this.prebuiltRegister=t.register,this.logger=t.logger??Q({prefix:"api"});let o=p=>typeof p.init=="function";t.manager&&this.logger.warn("'manager' is deprecated; pass the instance via 'canonicalManager' instead.");let s=t.manager??(t.canonicalManager&&o(t.canonicalManager)?t.canonicalManager:void 0);if(s&&t.register)throw new Error("Cannot provide both a CanonicalManager instance and 'register'. Use one or the other.");let a=t.canonicalManager&&!o(t.canonicalManager)?t.canonicalManager:void 0,c={...a},l=[["registry","registry",t.registry],["packageIndex","packageIndex",t.packageIndex],["dropCache","dropCanonicalManagerCache",t.dropCanonicalManagerCache],["patches","patches",t.patches]];for(let[p,d,u]of l)if(u!==void 0){if(c[p]!==void 0)throw new Error(`Cannot set both 'canonicalManager.${p}' and the deprecated '${d}'.`);this.logger.warn(`'${d}' is deprecated; use 'canonicalManager: { ${p} }' \u2014 it configures the CanonicalManager package loader.`),c[p]=u;}this.manager=s??CanonicalManager({packages:[],workingDir:c.workingDir??".codegen-cache/canonical-manager-cache",registry:c.registry,dropCache:c.dropCache,patches:{packageJson:c.patches?.packageJson??[],indexEntry:[...t.builtinPatches??true?fi.indexEntry??[]:[],...c.patches?.indexEntry??[]],fhirResource:c.patches?.fhirResource??[]},preprocessPackage:t.preprocessPackage,packageIndex:c.packageIndex,ignorePackageIndex:t.ignorePackageIndex}),a&&(s||t.register)&&this.logger.warn("loader configuration is ignored when a prebuilt manager/`register` is provided."),this.options=r;}fromPackage(t,n){let i=H({name:t,version:n||"latest"});return this.managerInput.npmPackages.push(i),this}fromPackageRef(t){return this.managerInput.npmPackages.push(t),this}localStructureDefinitions(t){return this.logger.info(`Registering local StructureDefinitions for ${t.package.name}@${t.package.version}`),this.managerInput.localSDs.push({name:t.package.name,version:t.package.version,path:t.path,dependencies:t.dependencies?.map(n=>H(n))}),this}localTgzPackage(t){return this.logger.info(`Registering local tgz package: ${t}`),this.managerInput.localTgzPackages.push({archivePath:w.resolve(t)}),this}introspection(t){let i={...{logger:this.logger,outputDir:this.options.outputDir,inMemoryOnly:false},...Object.fromEntries(Object.entries(t??{}).filter(([o,s])=>s!==void 0))},r=new nn(i);return this.generators.push({name:"introspection",writer:r}),this.logger.debug(`Configured introspection generator (${JSON.stringify(i,void 0,2)})`),this}typescript(t){let r={...{...{logger:this.logger,outputDir:this.generatorOutputDir("/types"),tabSize:4,withDebugComment:false,commentLinePrefix:"//",generateProfile:true},openResourceTypeSet:false,primitiveTypeExtension:true},...Object.fromEntries(Object.entries(t).filter(([s,a])=>a!==void 0))};r.terminology?.enabled&&(this.wantsTerminologyTypes=true);let o=new Sn(r);return this.generators.push({name:"typescript",writer:o}),this.logger.debug(`Configured TypeScript generator (${JSON.stringify(r,void 0,2)})`),this}python(t){let r={...{...{logger:this.logger,outputDir:this.options.outputDir,tabSize:4,withDebugComment:false,commentLinePrefix:"#"},rootPackageName:"fhir_types",fieldFormat:"camelCase",primitiveTypeExtension:false},...Object.fromEntries(Object.entries(t).filter(([s,a])=>a!==void 0))},o=new wt(r);return this.generators.push({name:"python",writer:o}),this.logger.debug("Configured python generator"),this}mustache(t,n){let i={logger:this.logger,outputDir:this.options.outputDir},r={meta:{timestamp:new Date().toISOString(),generator:"atomic-codegen"}},o={...i,...r,...n},s=br(t,o);return this.generators.push({name:`mustache[${t}]`,writer:s}),this.logger.debug(`Configured TypeScript generator (${JSON.stringify(o,void 0,2)})`),this}csharp(t){let r={...{...{logger:this.logger,outputDir:this.generatorOutputDir("/types"),tabSize:4,withDebugComment:false,commentLinePrefix:"//"},rootNamespace:"Fhir.Types"},...Object.fromEntries(Object.entries(t).filter(([s,a])=>a!==void 0))},o=new Nt(r);return this.generators.push({name:"csharp",writer:o}),this.logger.debug("Configured C# generator"),this}explicitOutputDir;generatorOutputDir(t){return this.explicitOutputDir!==void 0?this.explicitOutputDir:t===void 0?this.options.outputDir:w.join(this.options.outputDir,t)}outputTo(t){this.logger.debug(`Setting output directory: ${t}`),this.options.outputDir=t,this.explicitOutputDir=t;for(let n of this.generators)n.writer.setOutputDir(t);return this}throwException(t=true){return this.options.throwException=t,this}cleanOutput(t=true){return this.options.cleanOutput=t,this}wantsTerminologyTypes=false;typeSchema(t){return this.options.typeSchema??={},t.treeShake&&(xe(this.options.typeSchema.treeShake===void 0,"treeShake option is already 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t=performance.now(),n={success:false,outputDir:this.options.outputDir,filesGenerated:{},errors:[],warnings:[],duration:0};this.logger.debug(`Starting generation with ${this.generators.length} generators`);try{let i=this.generators.some(u=>!u.writer.opts.inMemoryOnly);this.options.cleanOutput&&i&&await mc(this.options,this.logger);let r;if(this.prebuiltRegister)this.logger.info("Using prebuilt register"),r=this.prebuiltRegister;else {this.logger.info("Initialize Canonical Manager"),this.managerInput.npmPackages.length>0&&await this.manager.addPackages(...this.managerInput.npmPackages.sort());for(let m of this.managerInput.localSDs)await this.manager.addLocalPackage(m);for(let m of this.managerInput.localTgzPackages)await this.manager.addTgzPackage(m);let u=await this.manager.init(),f=Object.values(u);r=await Bn(this.manager,{logger:this.logger.fork("reg"),focusedPackages:f}),n.inputReport=this.manager.report();}let o=this.logger.fork("ts"),{schemas:s,collisions:a}=await 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-Examples:`),T(["atomic-codegen typeschema generate hl7.fhir.r4.core@4.0.1 -o schemas.ndjson","atomic-codegen typeschema validate schemas.ndjson","atomic-codegen typeschema merge schema1.ndjson schema2.ndjson -o merged.ndjson"]);return}e.subcommand&&!["generate","validate","merge"].includes(e.subcommand)&&(ie.error(`Unknown typeschema subcommand: ${e.subcommand}`),ie.info("Available typeschema subcommands:"),T(["generate    Generate TypeSchema files from FHIR packages","validate    Validate TypeSchema files for correctness and consistency","merge       Merge multiple TypeSchema files into a single file"]),console.log(`
-Use 'atomic-codegen typeschema <subcommand> --help' for more information about a subcommand.`),process.exit(1));}};var G=I({prefix:"cli"});async function On(e){let n=e.logLevel??(e.debug||e.verbose?"DEBUG":"INFO");G=I({prefix:"cli",level:n});}function Bn(){return $n(hideBin(process.argv)).scriptName("atomic-codegen").usage("$0 <command> [options]").middleware(On).command(je).option("verbose",{alias:"v",type:"boolean",description:"Enable verbose output",default:false,global:true}).option("debug",{alias:"d",type:"boolean",description:"Enable debug output with detailed logging",default:false,global:true}).option("log-level",{alias:"l",type:"string",choices:["DEBUG","INFO","WARN","ERROR","SILENT"],description:"Set the log level (default: INFO)",global:true}).demandCommand(0).middleware(e=>{e._.length===0&&(se("Welcome to Atomic Codegen!"),console.log("Available commands:"),console.log("  typeschema   Generate, validate and merge TypeSchema files"),console.log(`
+Examples:`),be(["atomic-codegen typeschema generate hl7.fhir.r4.core@4.0.1 -o schemas.ndjson","atomic-codegen typeschema validate schemas.ndjson","atomic-codegen typeschema merge schema1.ndjson schema2.ndjson -o merged.ndjson"]);return}e.subcommand&&!["generate","validate","merge"].includes(e.subcommand)&&(oi.error(`Unknown typeschema subcommand: ${e.subcommand}`),oi.info("Available typeschema subcommands:"),be(["generate    Generate TypeSchema files from FHIR packages","validate    Validate TypeSchema files for correctness and consistency","merge       Merge multiple TypeSchema files into a single file"]),console.log(`
+Use 'atomic-codegen typeschema <subcommand> --help' for more information about a subcommand.`),process.exit(1));}};var si=Q({prefix:"cli"});async function Wc(e){let t=e.logLevel??(e.debug||e.verbose?"DEBUG":"INFO");si=Q({prefix:"cli",level:t});}function qc(){return Hc(hideBin(process.argv)).scriptName("atomic-codegen").usage("$0 <command> [options]").middleware(Wc).command(ao).command(oo).option("verbose",{alias:"v",type:"boolean",description:"Enable verbose output",default:false,global:true}).option("debug",{alias:"d",type:"boolean",description:"Enable debug output with detailed logging",default:false,global:true}).option("log-level",{alias:"l",type:"string",choices:["DEBUG","INFO","WARN","ERROR","SILENT"],description:"Set the log level (default: INFO)",global:true}).demandCommand(0).middleware(e=>{e._.length===0&&(ci("Welcome to Atomic Codegen!"),console.log("Available commands:"),console.log("  typeschema   Generate, validate and merge TypeSchema files"),console.log("  generate     Generate code from a JSON configuration file"),console.log(`
 Use 'atomic-codegen <command> --help' for more information about a command.`),console.log(`
-Quick examples:`),console.log("  atomic-codegen typeschema generate hl7.fhir.r4.core@4.0.1 -o schemas.ndjson"),console.log(`
-Use 'atomic-codegen --help' to see all options.`),process.exit(0));}).help().version("0.1.0").example("$0 typeschema generate hl7.fhir.r4.core@4.0.1 -o schemas.ndjson","Generate TypeSchemas from FHIR package").fail((e,n,i)=>{G.error(n?n.message:e),G.error("Use --help for usage information"),process.exit(1);}).wrap(Math.min(120,process.stdout.columns||80))}async function re(){await Bn().parseAsync();}import.meta.main&&re().catch(e=>{G.error(String(e)),process.exit(1);});re().catch(e=>{console.error("CLI Error:",e instanceof Error?e.message:e),process.exit(1);});
+Quick examples:`),console.log("  atomic-codegen typeschema generate hl7.fhir.r4.core@4.0.1 -o schemas.ndjson"),console.log("  atomic-codegen generate --config ./codegen.json"),console.log(`
+Use 'atomic-codegen --help' to see all options.`),process.exit(0));}).help().version(di.version).example("$0 typeschema generate hl7.fhir.r4.core@4.0.1 -o schemas.ndjson","Generate TypeSchemas from FHIR package").example("$0 generate --config ./codegen.json","Run the generation pipelines described by a config file").fail((e,t,n)=>{si.error(t?t.message:e),si.error("Use --help for usage information"),process.exit(1);}).wrap(Math.min(120,process.stdout.columns||80))}async function co(){await qc().parseAsync();}co().catch(e=>{console.error("CLI Error:",e instanceof Error?e.message:e),process.exit(1);});