@atomic-ehr/codegen 0.0.14 → 0.0.15

package/assets/api/writer-generator/typescript/profile-helpers.ts

@@ -92,6 +92,42 @@ export const applySliceMatch = <T extends object>(input: Partial<T>, match: Part
     return result as T;
 };
 
+const mergeFixedArray = (current: unknown[], fixed: unknown[]): unknown[] => {
+    const result = [...current];
+    for (const fixedItem of fixed) {
+        const existingIndex = result.findIndex((item) => matchesValue(item, fixedItem));
+        if (existingIndex === -1) {
+            result.push(fixedItem);
+        } else {
+            result[existingIndex] = mergeFixedValue(result[existingIndex], fixedItem);
+        }
+    }
+    return result;
+};
+
+const mergeFixedValue = (current: unknown, fixed: unknown): unknown => {
+    if (Array.isArray(current) && Array.isArray(fixed)) {
+        return mergeFixedArray(current, fixed);
+    }
+    if (isRecord(current) && isRecord(fixed)) {
+        const result: Record<string, unknown> = { ...current };
+        for (const [key, fixedValue] of Object.entries(fixed)) {
+            if (key === "__proto__" || key === "constructor" || key === "prototype") {
+                continue;
+            }
+            result[key] = mergeFixedValue(result[key], fixedValue);
+        }
+        return result;
+    }
+    return fixed;
+};
+
+/** Apply a generated fixed/profile value while preserving compatible existing data. */
+export const applyFixedValue = <T extends object>(resource: T, field: string, fixed: unknown): void => {
+    const rec = resource as Record<string, unknown>;
+    rec[field] = mergeFixedValue(rec[field], fixed);
+};
+
 /**
  * Recursively test whether `value` structurally contains everything in
  * `match`.  Arrays are matched with "every match item has a corresponding

package/dist/cli/index.js

@@ -1,15 +1,15 @@
 #!/usr/bin/env node
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le=e=>[...e.valueFieldTypes??[],...e.profile?[e.profile]:[],...e.subExtensions?.flatMap(t=>t.valueFieldType?[t.valueFieldType]:[])??[]];var pe=(e,t)=>{if(!e.url)throw new Error("ValueSet must have a URL");if(!e.name)throw new Error("ValueSet must have a name");return {...e,package_meta:e.package_meta||t,name:e.name,url:e.url}};function z(e){let t=e.split("|")[0];return t||e}function Oe(e){return e.split("|")[1]}var je=e=>({package:e.package_meta.name,version:e.package_meta.version,name:e.name,url:e.url});function I(e){let t=je(e);return e.derivation==="constraint"?{kind:"profile",...t}:e.kind==="primitive-type"?{kind:"primitive-type",...t}:e.kind==="complex-type"?{kind:"complex-type",...t}:e.kind==="resource"?{kind:"resource",...t}:e.kind==="logical"?{kind:"logical",...t}:{kind:"resource",...t}}var Me=e=>{let t=e.split("/"),i=t[t.length-1];return i&&i.length>0?i.split(/[-_]/).map(n=>n.charAt(0).toUpperCase()+n.slice(1).toLowerCase()).join(""):e};function H(e,t,i){let 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a=(c,l)=>{for(let s of c)n.push({system:l,code:s.code,display:s.display}),s.concept&&a(s.concept,l);};a(o.concept,r.system);}}catch{}}return n.length>0?n:void 0}var de=100,W=new Set(["code","Coding","CodeableConcept","CodeableReference","Quantity","string","uri","Duration"]);function K(e,t,i,n){if(!i.binding)return;let r=i.binding.strength,o=i.binding.valueSet;if(!o)return;if(!W.has(i.type??"")){n?.dryWarn("#binding",`eld-11: Binding on non-bindable type '${i.type}' (valueSet: ${o})`);return}if(!(r==="required"||r==="extensible"||r==="preferred"))return;let c=q(e,t.package_meta,o);if(!c||c.length===0)return;let l=c.map(s=>s.code).filter(s=>s&&typeof s=="string"&&s.trim().length>0);if(l.length>de){n?.dryWarn("#largeValueSet",`Value set ${o} has ${l.length} which is more than ${de} codes, which may cause issues with code generation.`);return}if(l.length!==0)return {isOpen:r!=="required",values:l}}function Ge(e,t,i,n,r){if(!n.binding?.valueSet)return;let 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Reason: ${a.reason}`);continue}for(let c of Le(e,r,i))n.push({schema:c,sourcePackage:o,sourceCanonical:r.url});}for(let r of e.allVs())n.push({schema:await De(e,r),sourcePackage:R(r.package_meta),sourceCanonical:r.url});return Ct(n,t,i)};var Ue={command:"generate <packages..>",describe:"Generate TypeSchema files from FHIR packages",builder:{packages:{type:"string",array:true,demandOption:true,describe:"FHIR packages to process (e.g., hl7.fhir.r4.core@4.0.1)"},output:{alias:"o",type:"string",describe:"Output file or directory",default:"./schemas.ndjson"},format:{alias:"f",type:"string",choices:["ndjson","json"],default:"ndjson",describe:"Output format for TypeSchema files"},treeshake:{alias:"t",type:"string",array:true,describe:"Only generate TypeSchemas for specific ResourceTypes (treeshaking)"},singleFile:{alias:"s",type:"boolean",default:false,describe:"Generate single TypeSchema file instead of multiple files (NDJSON format)"},verbose:{alias:"v",type:"boolean",default:false,describe:"Enable verbose output"},registry:{alias:"r",type:"string",describe:"Custom FHIR package registry URL (default: https://fs.get-ig.org/pkgs/)"}},handler:async e=>{let t=k({prefix:"TypeSchema"});try{t.info("Generating TypeSchema from FHIR packages"),t.info(`Packages: ${e.packages.join(", ")}`),t.info(`Output: ${e.output}`);let i=e.singleFile?"ndjson":e.format;t.debug(`Format: ${i}${e.singleFile&&e.format==="json"?" 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-`),await writeFile(c,l,"utf-8");let s=Date.now()-n;if(re(`Generated ${a.length} TypeSchema definitions`,s,{schemas:a.length}),t.info(`Output: ${c}`),e.verbose){t.debug("Generated schemas:");let d=a.map(u=>`${u.identifier?.name||"Unknown"} (${u.identifier?.kind||"unknown"})`);T(d);}}catch(i){t.error(`Failed to generate TypeSchema: ${i instanceof Error?i.message:String(i)}`),process.exit(1);}}};var ee=k({prefix:"typeschema"}),$e={command:"typeschema [subcommand]",describe:"TypeSchema operations - generate, validate and merge schemas",builder:e=>e.command(Ue).help().example("$0 typeschema generate hl7.fhir.r4.core@4.0.1","Generate TypeSchema from FHIR R4 core package"),handler:e=>{if(!e.subcommand&&e._.length===1){ee.info("Available typeschema subcommands:"),T(["generate    Generate TypeSchema files from FHIR packages"]),console.log(`
+           Either skip this canonical via skip-hack.ts, or upgrade the target to R5.`;function be(e,n,i){let t=i[i.length-1];if(!t)throw new Error(`Internal error: fieldName is missing for path ${i.join("/")}`);let r=i.slice(0,-1),o=e.resolveFsGenealogy(n.package_meta,n.url).flatMap(a=>{if(r.length===0)return a.required||[];if(!a.elements)return [];let s=a;for(let c of r)s=s?.elements?.[c];return s?.required||[]});return new Set(o).has(t)}function Te(e,n,i){let t=i[i.length-1];if(!t)throw new Error(`Internal error: fieldName is missing for path ${i.join("/")}`);let r=i.slice(0,-1),o=e.resolveFsGenealogy(n.package_meta,n.url).flatMap(a=>{if(r.length===0)return a.excluded||[];if(!a.elements)return [];let s=a;for(let c of r)s=s?.elements?.[c];return s?.excluded||[]});return new Set(o).has(t)}var pn=(e,n,i)=>{if(i.refers)return i.refers.map(t=>{let r=e.ensureSpecializationCanonicalUrl(t),o=e.resolveFs(n.package_meta,r);if(!o)throw new Error(`Failed to resolve fs for ${r}`);return I(o)})},dn=e=>{let n=new Set,i=new Set;if(e.required)for(let r of e.required)n.add(r);if(e.excluded)for(let r of e.excluded)i.add(r);if(e.elements)for(let[r,o]of Object.entries(e.elements))o.min!==void 0&&o.min>0&&n.add(r);let t=e.elements?Object.keys(e.elements):void 0;return {required:n.size>0?Array.from(n):void 0,excluded:i.size>0?Array.from(i):void 0,elements:t&&t.length>0?t:void 0}},mn=e=>!e||typeof e=="object"&&Object.keys(e).length===0,j=(e,n,i)=>{let t=e;for(let o=0;o<n.length-1;o++){let a=n[o];(!t[a]||typeof t[a]!="object")&&(t[a]={}),t=t[a];}let r=n[n.length-1];t[r]=i;},un=(e,n)=>{let i=e;for(let t of n)if(i&&typeof i=="object"&&!Array.isArray(i))i=i[t];else return;return i},Fe=(e,n,i,t,r)=>{if(i>=n.length||!e.elements)return;let o=n[i],a=e.elements[o];if(a){if(i===n.length-1&&a.fixed?.value!==void 0){j(t,n,a.fixed.value);return}if(a.slicing?.slices){r.add(n.slice(0,i+1).join("."));let s=n.slice(i+1);for(let c of Object.values(a.slicing.slices)){if(!c.min||c.min<1||!c.match||typeof c.match!="object")continue;let l=c.match;if(Object.keys(l).length!==0)if(s.length>0){let d=un(l,s);d!==void 0&&j(t,n,d);}else j(t,n.slice(0,i+1),l);}return}Fe(a,n,i+1,t,r);}},fn=(e,n,i)=>{if(e==="$this")return;let t=e.split("."),r=n;for(let a of t)if(r=r?.elements?.[a],!r)return;let o=r.type;!o||o.includes("/")||j(i,t,{resourceType:o});},gn=(e,n)=>{if(!n||!e||e.length===0)return;let i={},t=new Set;for(let r of e)if(r.type==="type")fn(r.path,n,i);else {if(!n.elements)continue;let o=r.path.split(".");Fe(n,o,0,i,t);}if(Object.keys(i).length!==0){for(let r of t){let o=r.split("."),a=i;for(let c=0;c<o.length-1;c++){let l=a[o[c]];if(!l||typeof l!="object"||Array.isArray(l))break;a=l;}let s=o[o.length-1];a[s]&&typeof a[s]=="object"&&!Array.isArray(a[s])&&(a[s]=[a[s]]);}return i}},ve=(e,n)=>{let i=n.slicing;if(!i)return;let t={};for(let[r,o]of Object.entries(i.slices??{})){if(!o)continue;let{required:a,excluded:s,elements:c}=o.schema?dn(o.schema):{};t[r]={min:o.min,max:o.max,match:mn(o.match)?gn(i.discriminator??[],o.schema):o.match,required:a,excluded:s,elements:c,nameCandidates:ge(e,r)};}return {discriminator:i.discriminator??[],rules:i.rules,ordered:i.ordered,slices:Object.keys(t).length>0?t:void 0}};function P(e,n,i,t,r){if(t.elementReference){let o=t.elementReference.slice(1).filter((a,s)=>s%2===1);return O(e,n,o)}else if(t.type){let o=e.ensureSpecializationCanonicalUrl(t.type),a=e.resolveFs(n.package_meta,o);if(!a){let s=R(n.package_meta),c=i.join("."),l=ln(e,n.package_meta,t.type);throw new Error(`Could not resolve field type:
+  package: ${s}
+  schema:  ${n.url}
+  field:   ${c}
+  type:    ${t.type}${l}`)}return I(a)}else {if(t.choices)return;if(n.derivation==="constraint")return;r?.dryWarn("#fieldTypeNotFound",`Can't recognize element type: <${n.url}>.${i.join(".")} (pkg: '${R(n.package_meta)}'): missing type info`);return}}var B=(e,n,i,t,r,o)=>{let a,s;t.binding&&(a=H(n,i,t),W.has(t.type??"")&&(s=K(e,n,t,r)));let c=P(e,n,i,t,r);c||r?.dryWarn("#fieldTypeNotFound",`Field type not found for '${n.url}#${i.join(".")}' (${n.derivation})`);let l;t.pattern?l={kind:"pattern",type:t.pattern.type,value:t.pattern.value}:t.fixed&&(l={kind:"fixed",type:t.fixed.type,value:t.fixed.value});let d=o??t;if(!l&&d.elements?.coding?.slicing?.slices){let u=d.elements.coding.slicing.slices,g=Object.values(u);g.length>0&&g.every(m=>m.min!==void 0&&m.min>=1&&m.match&&typeof m.match=="object"&&Object.keys(m.match).length>0)&&(l={kind:"fixed",type:"CodeableConcept",value:{coding:g.flatMap(f=>f.match?[f.match]:[])}});}return {type:c,required:be(e,n,i),excluded:Te(e,n,i),reference:pn(e,n,t),array:t.array||false,min:t.min,max:t.max,slicing:ve(i[i.length-1]??"",t),choices:t.choices,choiceOf:t.choiceOf,binding:a,enum:s,valueConstraint:l,mustSupport:t.mustSupport}};function M(e,n,i,t){return {type:O(e,n,i),array:t.array||false,required:be(e,n,i),excluded:Te(e,n,i),slicing:ve(i[i.length-1]??"",t)}}var yn=(e,n,i,t)=>{let r=e.resolveFs(n.package_meta,i);if(!r?.elements)return;let o=[];for(let[a,s]of Object.entries(r.elements)){if(s.choiceOf!=="value"&&!a.startsWith("value"))continue;let c=P(e,r,[a],s,t);c&&o.push(c);}return E(o)},hn=(e,n,i)=>{let t=[];if(!n.elements)return t;for(let[r,o]of Object.entries(n.elements)){if(!r.startsWith("extension:"))continue;let a=r.split(":")[1];if(!a)continue;let s;for(let[c,l]of Object.entries(o.elements??{}))if(!(l.choiceOf!=="value"&&!c.startsWith("value"))&&(s=P(e,n,[r,c],l,i),s))break;t.push({name:a,url:o.url??a,valueFieldType:s,min:o.min,max:o.max!==void 0?String(o.max):void 0});}return t},Sn=(e,n,i)=>{let t=[],o=n.elements?.extension?.slicing?.slices;if(!o||typeof o!="object")return t;for(let[a,s]of Object.entries(o)){let c=s,l=c.schema;if(!l)continue;let d;for(let[u,g]of Object.entries(l.elements??{})){let p=g;if(!(p.choiceOf!=="value"&&!u.startsWith("value"))&&(d=P(e,n,[u],p,i),d))break}t.push({name:a,url:c.match?.url??a,valueFieldType:d,min:l._required?1:l.min??0,max:l.max!==void 0?String(l.max):l.array?"*":"1"});}return t},Rn=(e,n,i,t)=>{let r=e.resolveFs(n.package_meta,i);if(!r?.elements)return;let o=hn(e,r,t),a=Sn(e,r,t),s=[...o,...a];return s.length>0?s:void 0},Ee=(e,n,i)=>{let t=[],r=(c,l,d)=>{let u=d.url,g=u?yn(e,n,u,i):void 0,p=u?Rn(e,n,u,i):void 0;if(!u){let S=n.elements?.extension?.slicing?.slices?.[l]?.schema;if(S){u=S.elements?.url?.fixed?.value??l;for(let[x,C]of Object.entries(S.elements??{})){let N=C;if(N.choiceOf==="value"||x.startsWith("value")){let te=P(e,n,[x],N,i);if(te){g=[te];break}}}}}let m=p&&p.length>0,f=u?e.resolveFs(n.package_meta,u):void 0,y=f?I(f):void 0,h=[...c,"extension"].join(".");t.push({name:l,path:h,url:u,profile:y,min:d.min,max:d.max!==void 0?String(d.max):void 0,mustSupport:d.mustSupport,valueFieldTypes:g,subExtensions:p,isComplex:m,nameCandidates:fe({name:l,path:h})});},o=(c,l)=>{if(l.extensions)for(let[d,u]of Object.entries(l.extensions))r(c,d,u);if(l.elements)for(let[d,u]of Object.entries(l.elements))o([...c,d],u);};o([],n);let a=new Set,s=t.filter(c=>{let l=`${c.url}:${c.path}`;return a.has(l)?false:(a.add(l),true)});return s.length===0?void 0:s};function xn(e,n,i,t,r){if(!t)return;let o={};for(let a of e.getAllElementKeys(t)){let s=[...i,a],c=e.resolveElementSnapshot(n,s),l=c.type?e.ensureSpecializationCanonicalUrl(c.type):void 0;if(l&&v(n.package_meta,l).shouldSkip){r?.warn("#skipCanonical",`Skipping field ${s} for ${l} due to skip hack ${v(n.package_meta,l).reason}`);continue}Q(e,n,s,c,t[a])?o[a]=M(e,n,s,c):o[a]=B(e,n,s,c,r,t[a]);}return o}function Cn(e){let n=[];for(let i of Object.values(e))"type"in i&&i.type&&n.push(i.type),"binding"in i&&i.binding&&n.push(i.binding);return n}async function De(e,n,i){if(!n.url)throw new Error("ValueSet URL is required");let t=L(e,n.package_meta,n.url),r=q(e,n.package_meta,n.url);return {identifier:t,description:n.description,concept:r,compose:r?void 0:n.compose}}var Le=(e,n,i)=>{let t=[];return e&&t.push(e),n&&t.push(...Cn(n)),i&&t.push(...Ie(i)),t},Ne=(e,n,i,t)=>{let o=Le(n,i,t).filter(a=>!(a.url===e.url||G(a)));return E(o)},kn=(e,n,i,t)=>{let o=Le(n,i,t).filter(a=>a.url!==e.url);return E(o)};function He(e,n,i){let t;if(n.base){let l=e.resolveFs(n.package_meta,e.ensureSpecializationCanonicalUrl(n.base));if(!l)throw new Error(`Base resource not found '${n.base}' for <${n.url}> from ${R(n.package_meta)}`);let d=I(l);Pe(!G(d),`Unexpected nested base for ${n.url}`),t=d;}let r=xn(e,n,[],n.elements,i),o=ke(e,n,i),a=me(e,n,i);if(n.derivation==="constraint"){let l=I(n);if(!t)throw new Error(`Profile ${n.url} must have a base type`);let d=Ee(e,n,i),u=d?.flatMap(le),g=kn(l,t,r,o),p={identifier:l,base:t,fields:r,nested:o,description:n.description,dependencies:E(g,u),extensions:d};return ye(p),[p,...a]}if(n.kind==="primitive-type"){let l=I(n);return Pe(t,`Primitive type ${n.url} must have a base type`),[{identifier:l,description:n.description,base:t,dependencies:Ne(l,t,r,o)},...a]}let s=I(n);return [{identifier:s,base:t,fields:r,nested:o,description:n.description,dependencies:Ne(s,t,r,o),typeFamily:void 0},...a]}var In=(e,n,i)=>{let t={};for(let a of e){let s=`${a.schema.identifier.url}|${a.schema.identifier.package}`,c=se(a.schema);t[s]??={},t[s][c]??={typeSchema:a.schema,sources:[]},t[s][c].sources.push(a);}let r=[],o={};for(let a of Object.values(t)){let s=Object.values(a).sort((l,d)=>d.sources.length-l.sources.length),c=s[0];if(c)if(s.length>1){let l=c.typeSchema.identifier.url,d=c.typeSchema.identifier.package;i?.dryWarn("#duplicateSchema",`'${l}' from '${d}' has ${s.length} versions`),r.push(c.typeSchema);o[d]??={},o[d][l]=s.flatMap(g=>g.sources.map(p=>({typeSchema:g.typeSchema,sourcePackage:p.sourcePackage,sourceCanonical:p.sourceCanonical})));}else r.push(c.typeSchema);}return {schemas:r,collisions:o}},we=async(e,n,i)=>{let t=[];for(let r of e.allFs()){let o=R(r.package_meta),a=v(r.package_meta,r.url);if(a.shouldSkip){i?.dryWarn("#skipCanonical",`Skip ${r.url} from ${o}. Reason: ${a.reason}`);continue}for(let s of He(e,r,i))t.push({schema:s,sourcePackage:o,sourceCanonical:r.url});}for(let r of e.allVs())t.push({schema:await De(e,r),sourcePackage:R(r.package_meta),sourceCanonical:r.url});return In(t,n,i)};var Ue={command:"generate <packages..>",describe:"Generate TypeSchema files from FHIR packages",builder:{packages:{type:"string",array:true,demandOption:true,describe:"FHIR packages to process (e.g., hl7.fhir.r4.core@4.0.1)"},output:{alias:"o",type:"string",describe:"Output file or directory",default:"./schemas.ndjson"},format:{alias:"f",type:"string",choices:["ndjson","json"],default:"ndjson",describe:"Output format for TypeSchema files"},treeshake:{alias:"t",type:"string",array:true,describe:"Only generate TypeSchemas for specific ResourceTypes (treeshaking)"},singleFile:{alias:"s",type:"boolean",default:false,describe:"Generate single TypeSchema file instead of multiple files (NDJSON format)"},verbose:{alias:"v",type:"boolean",default:false,describe:"Enable verbose output"},registry:{alias:"r",type:"string",describe:"Custom FHIR package registry URL (default: https://fs.get-ig.org/pkgs/)"}},handler:async e=>{let n=k({prefix:"TypeSchema"});try{n.info("Generating TypeSchema from FHIR packages"),n.info(`Packages: ${e.packages.join(", ")}`),n.info(`Output: ${e.output}`);let i=e.singleFile?"ndjson":e.format;n.debug(`Format: ${i}${e.singleFile&&e.format==="json"?" (forced from json due to singleFile)":""}`),e.treeshake&&e.treeshake.length>0&&n.info(`Treeshaking enabled for ResourceTypes: ${e.treeshake.join(", ")}`),e.singleFile&&n.info("Single file output enabled (NDJSON format)"),e.registry&&n.info(`Using custom registry: ${e.registry}`);let t=Date.now(),r=e.packages.map(d=>{if(d.includes("@")){let u=d.lastIndexOf("@");return {name:d.slice(0,u),version:d.slice(u+1)||"latest"}}return {name:d,version:"latest"}});n.info(`Processing packages: ${r.map(d=>`${d.name}@${d.version}`).join(", ")}`);let o=await xe(r,{logger:n,registry:e.registry,focusedPackages:r}),{schemas:a}=await we(o,void 0,n);if(a.length===0)throw new Error("No schemas were generated from the specified packages");let s=e.output;if(!s)throw new Error("Output format not specified");await mkdir(dirname(s),{recursive:!0});let c;i==="json"?c=JSON.stringify(a,null,2):c=a.map(d=>JSON.stringify(d)).join(`
+`),await writeFile(s,c,"utf-8");let l=Date.now()-t;if(re(`Generated ${a.length} TypeSchema definitions`,l,{schemas:a.length}),n.info(`Output: ${s}`),e.verbose){n.debug("Generated schemas:");let d=a.map(u=>`${u.identifier?.name||"Unknown"} (${u.identifier?.kind||"unknown"})`);F(d);}}catch(i){n.error(`Failed to generate TypeSchema: ${i instanceof Error?i.message:String(i)}`),process.exit(1);}}};var ee=k({prefix:"typeschema"}),$e={command:"typeschema [subcommand]",describe:"TypeSchema operations - generate, validate and merge schemas",builder:e=>e.command(Ue).help().example("$0 typeschema generate hl7.fhir.r4.core@4.0.1","Generate TypeSchema from FHIR R4 core package"),handler:e=>{if(!e.subcommand&&e._.length===1){ee.info("Available typeschema subcommands:"),F(["generate    Generate TypeSchema files from FHIR packages"]),console.log(`
 Use 'atomic-codegen typeschema <subcommand> --help' for more information about a subcommand.`),console.log(`
-Examples:`),T(["atomic-codegen typeschema generate hl7.fhir.r4.core@4.0.1 -o schemas.ndjson","atomic-codegen typeschema validate schemas.ndjson","atomic-codegen typeschema merge schema1.ndjson schema2.ndjson -o merged.ndjson"]);return}e.subcommand&&!["generate","validate","merge"].includes(e.subcommand)&&(ee.error(`Unknown typeschema subcommand: ${e.subcommand}`),ee.info("Available typeschema subcommands:"),T(["generate    Generate TypeSchema files from FHIR packages","validate    Validate TypeSchema files for correctness and consistency","merge       Merge multiple TypeSchema files into a single file"]),console.log(`
-Use 'atomic-codegen typeschema <subcommand> --help' for more information about a subcommand.`),process.exit(1));}};var _=k({prefix:"cli"});async function vt(e){let t=e.logLevel??(e.debug||e.verbose?"DEBUG":"INFO");_=k({prefix:"cli",level:t});}function Et(){return Ft(hideBin(process.argv)).scriptName("atomic-codegen").usage("$0 <command> [options]").middleware(vt).command($e).option("verbose",{alias:"v",type:"boolean",description:"Enable verbose output",default:false,global:true}).option("debug",{alias:"d",type:"boolean",description:"Enable debug output with detailed logging",default:false,global:true}).option("log-level",{alias:"l",type:"string",choices:["DEBUG","INFO","WARN","ERROR","SILENT"],description:"Set the log level (default: INFO)",global:true}).demandCommand(0).middleware(e=>{e._.length===0&&(ie("Welcome to Atomic Codegen!"),console.log("Available commands:"),console.log("  typeschema   Generate, validate and merge TypeSchema files"),console.log(`
+Examples:`),F(["atomic-codegen typeschema generate hl7.fhir.r4.core@4.0.1 -o schemas.ndjson","atomic-codegen typeschema validate schemas.ndjson","atomic-codegen typeschema merge schema1.ndjson schema2.ndjson -o merged.ndjson"]);return}e.subcommand&&!["generate","validate","merge"].includes(e.subcommand)&&(ee.error(`Unknown typeschema subcommand: ${e.subcommand}`),ee.info("Available typeschema subcommands:"),F(["generate    Generate TypeSchema files from FHIR packages","validate    Validate TypeSchema files for correctness and consistency","merge       Merge multiple TypeSchema files into a single file"]),console.log(`
+Use 'atomic-codegen typeschema <subcommand> --help' for more information about a subcommand.`),process.exit(1));}};var _=k({prefix:"cli"});async function Pn(e){let n=e.logLevel??(e.debug||e.verbose?"DEBUG":"INFO");_=k({prefix:"cli",level:n});}function Nn(){return vn(hideBin(process.argv)).scriptName("atomic-codegen").usage("$0 <command> [options]").middleware(Pn).command($e).option("verbose",{alias:"v",type:"boolean",description:"Enable verbose output",default:false,global:true}).option("debug",{alias:"d",type:"boolean",description:"Enable debug output with detailed logging",default:false,global:true}).option("log-level",{alias:"l",type:"string",choices:["DEBUG","INFO","WARN","ERROR","SILENT"],description:"Set the log level (default: INFO)",global:true}).demandCommand(0).middleware(e=>{e._.length===0&&(ie("Welcome to Atomic Codegen!"),console.log("Available commands:"),console.log("  typeschema   Generate, validate and merge TypeSchema files"),console.log(`
 Use 'atomic-codegen <command> --help' for more information about a command.`),console.log(`
 Quick examples:`),console.log("  atomic-codegen typeschema generate hl7.fhir.r4.core@4.0.1 -o schemas.ndjson"),console.log(`
-Use 'atomic-codegen --help' to see all options.`),process.exit(0));}).help().version("0.1.0").example("$0 typeschema generate hl7.fhir.r4.core@4.0.1 -o schemas.ndjson","Generate TypeSchemas from FHIR package").fail((e,t,i)=>{_.error(t?t.message:e),_.error("Use --help for usage information"),process.exit(1);}).wrap(Math.min(120,process.stdout.columns||80))}async function te(){await Et().parseAsync();}import.meta.main&&te().catch(e=>{_.error(String(e)),process.exit(1);});te().catch(e=>{console.error("CLI Error:",e instanceof Error?e.message:e),process.exit(1);});
+Use 'atomic-codegen --help' to see all options.`),process.exit(0));}).help().version("0.1.0").example("$0 typeschema generate hl7.fhir.r4.core@4.0.1 -o schemas.ndjson","Generate TypeSchemas from FHIR package").fail((e,n,i)=>{_.error(n?n.message:e),_.error("Use --help for usage information"),process.exit(1);}).wrap(Math.min(120,process.stdout.columns||80))}async function ne(){await Nn().parseAsync();}import.meta.main&&ne().catch(e=>{_.error(String(e)),process.exit(1);});ne().catch(e=>{console.error("CLI Error:",e instanceof Error?e.message:e),process.exit(1);});

package/dist/index.d.ts

@@ -913,7 +913,7 @@ type LoggerOptions<T extends string> = {
     level?: LogLevel;
 };
 
-type CodegenTag = "#binding" | "#largeValueSet" | "#fieldTypeNotFound" | "#skipCanonical" | "#duplicateSchema" | "#duplicateCanonical" | "#resolveBase" | "#resolveCollisionMiss";
+type CodegenTag = "#binding" | "#largeValueSet" | "#placeholderValueSet" | "#fieldTypeNotFound" | "#skipCanonical" | "#duplicateSchema" | "#duplicateCanonical" | "#resolveBase" | "#resolveCollisionMiss";
 type CodegenLog = Log<CodegenTag>;
 type CodegenLogManager = LogManager<CodegenTag>;
 declare const mkCodegenLogger: (opts?: LoggerOptions<CodegenTag>) => LogManager<CodegenTag>;