@atomic-ehr/codegen 0.0.1-canary.20251009074815.3e20aa6 → 0.0.1-canary.20251009083957.bf76104

package/dist/cli/index.js

@@ -1,8 +1,8 @@
 #!/usr/bin/env node
-import Pr from'yargs';import {hideBin}from'yargs/helpers';import'perf_hooks';import'ora';import y from'picocolors';import*as F from'fs';import {existsSync,mkdirSync}from'fs';import*as q from'path';import {dirname,resolve,join,relative}from'path';import {CanonicalManager}from'@atomic-ehr/fhir-canonical-manager';import*as ct from'@atomic-ehr/fhirschema';import {mkdir,writeFile,readFile,readdir,stat,unlink,access,rm}from'fs/promises';var Ce=Object.defineProperty;var At=Object.getOwnPropertyDescriptor;var Gt=Object.getOwnPropertyNames;var Ht=Object.prototype.hasOwnProperty;var Ut=(s=>typeof require<"u"?require:typeof Proxy<"u"?new Proxy(s,{get:(e,t)=>(typeof require<"u"?require:e)[t]}):s)(function(s){if(typeof require<"u")return require.apply(this,arguments);throw Error('Dynamic require of "'+s+'" is not supported')});var W=(s,e)=>()=>(s&&(e=s(s=0)),e);var Fe=(s,e)=>{for(var t in e)Ce(s,t,{get:e[t],enumerable:true});},zt=(s,e,t,r)=>{if(e&&typeof e=="object"||typeof e=="function")for(let i of Gt(e))!Ht.call(s,i)&&i!==t&&Ce(s,i,{get:()=>e[i],enumerable:!(r=At(e,i))||r.enumerable});return s};var ke=s=>zt(Ce({},"__esModule",{value:true}),s);var S,ce,A,E,le,pe,G=W(()=>{S=class extends Error{constructor(t,r,i){super(t);this.phase=r;this.context=i;this.name=this.constructor.name,this.timestamp=new Date,this.errorId=this.generateErrorId(),Error.captureStackTrace&&Error.captureStackTrace(this,this.constructor);}timestamp;errorId;generateErrorId(){return `${this.constructor.name}-${Date.now()}-${Math.random().toString(36).substr(2,9)}`}getDetailedMessage(){let t=[`\u274C ${this.constructor.name}: ${this.message}`,`   Error ID: ${this.errorId}`,`   Phase: ${this.phase}`,`   Time: ${this.timestamp.toISOString()}`];return this.context&&Object.keys(this.context).length>0&&(t.push(""),t.push("\u{1F4CD} Context:"),Object.entries(this.context).forEach(([r,i])=>{t.push(`   ${r}: ${this.formatContextValue(i)}`);})),t.join(`
+import Pr from'yargs';import {hideBin}from'yargs/helpers';import'perf_hooks';import'ora';import y from'picocolors';import*as F from'fs';import {existsSync,mkdirSync}from'fs';import*as q from'path';import {dirname,resolve,join,relative}from'path';import {CanonicalManager}from'@atomic-ehr/fhir-canonical-manager';import*as ct from'@atomic-ehr/fhirschema';import {mkdir,writeFile,readFile,readdir,stat,unlink,access,rm}from'fs/promises';var Ce=Object.defineProperty;var At=Object.getOwnPropertyDescriptor;var Gt=Object.getOwnPropertyNames;var Ht=Object.prototype.hasOwnProperty;var Ut=(s=>typeof require<"u"?require:typeof Proxy<"u"?new Proxy(s,{get:(e,t)=>(typeof require<"u"?require:e)[t]}):s)(function(s){if(typeof require<"u")return require.apply(this,arguments);throw Error('Dynamic require of "'+s+'" is not supported')});var W=(s,e)=>()=>(s&&(e=s(s=0)),e);var Fe=(s,e)=>{for(var t in e)Ce(s,t,{get:e[t],enumerable:true});},_t=(s,e,t,r)=>{if(e&&typeof e=="object"||typeof e=="function")for(let i of Gt(e))!Ht.call(s,i)&&i!==t&&Ce(s,i,{get:()=>e[i],enumerable:!(r=At(e,i))||r.enumerable});return s};var ke=s=>_t(Ce({},"__esModule",{value:true}),s);var S,ce,A,E,le,pe,G=W(()=>{S=class extends Error{constructor(t,r,i){super(t);this.phase=r;this.context=i;this.name=this.constructor.name,this.timestamp=new Date,this.errorId=this.generateErrorId(),Error.captureStackTrace&&Error.captureStackTrace(this,this.constructor);}timestamp;errorId;generateErrorId(){return `${this.constructor.name}-${Date.now()}-${Math.random().toString(36).substr(2,9)}`}getDetailedMessage(){let t=[`\u274C ${this.constructor.name}: ${this.message}`,`   Error ID: ${this.errorId}`,`   Phase: ${this.phase}`,`   Time: ${this.timestamp.toISOString()}`];return this.context&&Object.keys(this.context).length>0&&(t.push(""),t.push("\u{1F4CD} Context:"),Object.entries(this.context).forEach(([r,i])=>{t.push(`   ${r}: ${this.formatContextValue(i)}`);})),t.join(`
 `)}formatContextValue(t){if(t==null)return String(t);if(typeof t=="string")return `"${t}"`;if(typeof t=="object")try{return JSON.stringify(t,null,2)}catch{return "[Object]"}return String(t)}getSeverity(){return "error"}isRecoverable(){return  false}getDocumentationLinks(){return ["https://github.com/atomic-ehr/codegen/docs/troubleshooting.md",`https://github.com/atomic-ehr/codegen/docs/errors/${this.constructor.name}.md`]}},ce=class extends S{constructor(t,r,i,n){super(t,"validation",{schemaName:r.identifier?.name||"unknown",schemaKind:r.identifier?.kind||"unknown",schemaPackage:r.identifier?.package||"unknown",validationErrors:i,userContext:n});this.schema=r;this.validationErrors=i;this.userContext=n;}getSuggestions(){let t=[];t.push("Verify the schema follows the TypeSchema specification"),t.push("Check that all required fields are present and properly typed");for(let r of this.validationErrors)r.includes("identifier.name")&&(t.push("\u2728 Add a valid identifier.name field to your schema"),t.push('\u{1F4A1} Example: identifier: { name: "Patient", kind: "resource" }')),r.includes("identifier.kind")&&(t.push('\u{1F3AF} Set identifier.kind to: "resource", "complex-type", "profile", or "primitive-type"'),t.push("\u{1F4DA} Check FHIR specification for the correct kind value")),r.includes("circular")&&(t.push("\u{1F504} Remove circular references between schemas"),t.push("\u{1F4A1} Use forward declarations for recursive types"),t.push("\u{1F50D} Look for schemas that reference each other in a loop")),r.includes("fields")&&(t.push("\u{1F4DD} Check that all fields have proper type definitions"),t.push("\u{1F527} Ensure field types reference valid TypeSchema identifiers"));return this.userContext?.isBeginnerMode&&(t.push(""),t.push("\u{1F393} Beginner Tips:"),t.push("\u{1F4D6} Start with the Quick Start guide: docs/getting-started/quick-start.md"),t.push("\u{1F50D} Use --verbose flag for detailed error information"),t.push("\u{1F9EA} Test with a simple schema first to verify your setup"),this.userContext.previousSuccessfulSchemas?.length&&t.push(`\u2705 Compare with your working schema: ${this.userContext.previousSuccessfulSchemas[0]}`)),this.userContext?.isBeginnerMode||(t.push(""),t.push("\u{1F527} Advanced Debugging:"),t.push("\u{1F575}\uFE0F Enable schema validation debugging"),t.push("\u{1F4CA} Check schema statistics and complexity metrics"),t.push("\u26A1 Consider schema preprocessing if dealing with complex inheritance")),t}isRecoverable(){return this.validationErrors.every(t=>!t.includes("circular")&&!t.includes("corruption"))}},A=class extends S{constructor(t,r,i,n){super(t,"generation",{templateName:r,contextKeys:Object.keys(i),availableTemplates:n?.availableTemplates?.length||0,debugInfo:n});this.templateName=r;this.templateContext=i;this.debugInfo=n;}getSuggestions(){let t=[];if(this.debugInfo?.availableTemplates?.length&&!this.debugInfo.availableTemplates.includes(this.templateName)){t.push(`\u274C Template '${this.templateName}' not found`),t.push("\u{1F4C2} Available templates:"),this.debugInfo.availableTemplates.forEach(i=>{t.push(`   \u2022 ${i}`);});let r=this.findSimilarTemplates(this.templateName,this.debugInfo.availableTemplates);r.length>0&&(t.push("\u{1F914} Did you mean:"),r.forEach(i=>{t.push(`   \u2022 ${i}`);}));}if(this.debugInfo?.missingVariables?.length){t.push("\u{1F4DD} Missing template variables:"),this.debugInfo.missingVariables.forEach(i=>{t.push(`   \u2022 ${i}`);}),t.push("\u{1F4A1} Add these variables to your template context");let r=Object.keys(this.templateContext);this.debugInfo.missingVariables.forEach(i=>{let n=r.filter(o=>this.levenshteinDistance(i.toLowerCase(),o.toLowerCase())<=2);n.length>0&&t.push(`   Similar to: ${n.join(", ")}`);});}if(this.debugInfo?.lineNumber&&(t.push(`\u{1F41B} Check template syntax around line ${this.debugInfo.lineNumber}`),this.debugInfo.columnNumber&&t.push(`   Column: ${this.debugInfo.columnNumber}`),this.debugInfo.templateSource)){let i=this.debugInfo.templateSource.split(`
 `)[this.debugInfo.lineNumber-1];i&&t.push(`   Code: ${i.trim()}`);}return t.push("\u{1F527} Template debugging steps:"),t.push("   \u2022 Enable template debugging: { debug: true }"),t.push("   \u2022 Verify template file exists and has correct syntax"),t.push("   \u2022 Check template variable names match context keys"),t.push("   \u2022 Ensure template engine is properly configured"),t}findSimilarTemplates(t,r){return r.filter(i=>{let n=this.levenshteinDistance(t.toLowerCase(),i.toLowerCase());return n<=2&&n>0}).slice(0,3).sort((i,n)=>this.levenshteinDistance(t.toLowerCase(),i.toLowerCase())-this.levenshteinDistance(t.toLowerCase(),n.toLowerCase()))}levenshteinDistance(t,r){let i=Array(r.length+1).fill(null).map(()=>Array(t.length+1).fill(0));for(let n=0;n<=t.length;n++)i[0][n]=n;for(let n=0;n<=r.length;n++)i[n][0]=n;for(let n=1;n<=r.length;n++)for(let o=1;o<=t.length;o++){let c=t[o-1]===r[n-1]?0:1;i[n][o]=Math.min(i[n]?.[o-1]+1,i[n-1]?.[o]+1,i[n-1]?.[o-1]+c);}return i[r.length]?.[t.length]}isRecoverable(){return  true}},E=class extends S{constructor(t,r,i,n,o){super(t,"writing",{operation:r,filePath:i,originalErrorMessage:n?.message,originalErrorCode:n?.code,recoveryOptions:o});this.operation=r;this.filePath=i;this.originalError=n;this.recoveryOptions=o;}getSuggestions(){let t=[],r=this.originalError?.code;switch(this.operation){case "create":case "write":t.push("\u{1F4C1} File writing troubleshooting:"),t.push("   \u2022 Check if the output directory exists"),t.push("   \u2022 Verify write permissions for the target directory"),t.push("   \u2022 Ensure no other process has the file locked"),this.filePath.includes(" ")&&t.push("   \u2022 File path contains spaces - check path escaping"),this.recoveryOptions?.alternativePaths?.length&&(t.push("\u{1F504} Alternative output directories:"),this.recoveryOptions.alternativePaths.forEach(i=>{t.push(`   \u2022 ${i}`);}));break;case "read":t.push("\u{1F4D6} File reading troubleshooting:"),t.push("   \u2022 Verify the file exists at the specified path"),t.push("   \u2022 Check file read permissions"),t.push("   \u2022 Ensure file is not corrupted");break;case "delete":t.push("\u{1F5D1}\uFE0F File deletion troubleshooting:"),t.push("   \u2022 Check if file is locked by another process"),t.push("   \u2022 Verify delete permissions for the directory"),t.push("   \u2022 Ensure file exists before attempting deletion");break}switch(r){case "EACCES":t.push("\u{1F510} Permission Error:"),t.push("   \u2022 Current user lacks necessary file permissions"),this.recoveryOptions?.permissionFix?t.push(`   \u2022 Fix command: ${this.recoveryOptions.permissionFix}`):t.push(`   \u2022 Try: chmod 755 "${this.filePath}"`),t.push("   \u2022 Consider running with elevated permissions"),t.push("   \u2022 Check directory ownership and permissions");break;case "ENOSPC":if(t.push("\u{1F4BE} Disk Space Error:"),t.push("   \u2022 Insufficient disk space available"),t.push("   \u2022 Free up disk space and retry"),t.push("   \u2022 Consider using a different output directory"),this.recoveryOptions?.diskSpaceRequired){let i=Math.ceil(this.recoveryOptions.diskSpaceRequired/1024/1024);t.push(`   \u2022 Required space: ~${i}MB`);}break;case "ENOENT":t.push("\u{1F4C2} File Not Found:"),t.push("   \u2022 File or directory does not exist"),t.push("   \u2022 Check the file path for typos"),t.push("   \u2022 Ensure parent directories exist"),t.push(`   \u2022 Create directory: mkdir -p "$(dirname "${this.filePath}")"`);break;case "EMFILE":case "ENFILE":t.push("\u{1F4CA} Too Many Open Files:"),t.push("   \u2022 System has reached file handle limit"),t.push("   \u2022 Close unused files and retry"),t.push("   \u2022 Consider processing files in smaller batches");break}return this.recoveryOptions?.canRetry&&(t.push(""),t.push("\u{1F504} Recovery Options:"),t.push("   \u2022 This operation can be retried safely"),t.push("   \u2022 Fix the underlying issue and run again")),t.push(""),t.push("\u{1F50D} General Debugging:"),t.push("   \u2022 Check system logs for more details"),t.push("   \u2022 Verify disk health if errors persist"),t.push("   \u2022 Test with a simpler file path"),t}isRecoverable(){return this.recoveryOptions?.canRetry||false}getRecoveryActions(){let t=[];switch(this.originalError?.code){case "EACCES":t.push({action:"Fix file permissions",command:`chmod 755 "${this.filePath}"`,automatic:false,riskLevel:"medium"});break;case "ENOENT":t.push({action:"Create missing directory",command:`mkdir -p "$(dirname "${this.filePath}")"`,automatic:true,riskLevel:"low"});break;case "ENOSPC":t.push({action:"Free up disk space",automatic:false,riskLevel:"low"});break}return t}},le=class extends S{constructor(t,r,i,n,o){super(t,"initialization",{configKey:r,providedValue:i,providedType:typeof i,expectedValue:n,validOptions:o});this.configKey=r;this.providedValue=i;this.expectedValue=n;this.validOptions=o;}getSuggestions(){let t=[];switch(t.push(`\u2699\uFE0F Configuration error for '${this.configKey}'`),t.push(`   Provided: ${JSON.stringify(this.providedValue)} (${typeof this.providedValue})`),this.expectedValue&&t.push(`   Expected: ${this.expectedValue}`),this.validOptions?.length&&(t.push("   Valid options:"),this.validOptions.forEach(r=>{t.push(`   \u2022 ${JSON.stringify(r)}`);})),t.push(""),t.push("\u{1F527} Configuration fixes:"),t.push(`   \u2022 Check the '${this.configKey}' value in your configuration`),t.push("   \u2022 Refer to the configuration documentation"),t.push("   \u2022 Use TypeScript for better config validation"),t.push("   \u2022 Check for typos in configuration keys"),this.configKey){case "outputDir":t.push("   \u2022 Ensure the output directory path exists"),t.push("   \u2022 Use absolute paths for better reliability");break;case "logger":t.push("   \u2022 Provide a valid logger instance"),t.push("   \u2022 Use createLogger() from utils/codegen-logger");break;case "validation":t.push('   \u2022 Set to true, false, or "strict"');break}return t}isRecoverable(){return  true}},pe=class extends S{constructor(t,r){super(t,"generation",{errorCount:r.length,errorTypes:[...new Set(r.map(i=>i.constructor.name))],phases:[...new Set(r.map(i=>i.phase))]});this.errors=r;}getSuggestions(){let t=this.errors.flatMap(c=>c.getSuggestions()),r=[...new Set(t)],i=[];i.push(`\u{1F4CA} Batch operation failed with ${this.errors.length} errors:`);let n=new Map;this.errors.forEach(c=>{let a=c.constructor.name;n.has(a)||n.set(a,[]),n.get(a)?.push(c);}),i.push(""),i.push("\u{1F50D} Error breakdown:");for(let[c,a]of n)i.push(`   \u2022 ${c}: ${a.length} occurrences`);i.push("\u{1F4A1} Most relevant suggestions:");let o=r.slice(0,8).map(c=>`   ${c}`);return i.push(...o),i}getErrorBreakdown(){let t=[];return this.errors.forEach((r,i)=>{t.push(`${i+1}. ${r.constructor.name}: ${r.message}`),r.context?.schemaName&&t.push(`   Schema: ${r.context.schemaName}`),r.context?.filename&&t.push(`   File: ${r.context.filename}`),t.push("");}),t.join(`
-`)}isRecoverable(){return this.errors.some(t=>t.isRecoverable())}getRecoverableErrors(){return this.errors.filter(t=>t.isRecoverable())}getNonRecoverableErrors(){return this.errors.filter(t=>!t.isRecoverable())}};});var Ct={};Fe(Ct,{FileBuilder:()=>_e});var _e,Ft=W(()=>{G();_e=class{config;content="";imports=new Map;exports=new Set;metadata=new Map;beforeSaveHooks=[];afterSaveHooks=[];errorHooks=[];options={template:void 0,importStrategy:"auto",validation:"strict",prettify:true,formatting:{indentSize:2,useTabs:false,maxLineLength:100},encoding:"utf-8"};constructor(e){this.config=e;}withContent(e){return this.content=typeof e=="string"?e:e(),this}withTemplate(e,t){if(!this.config.templateEngine)throw new A(`Template engine is required for template rendering. Template: '${e}'`,e,t);this.options.template=e;try{this.content=this.config.templateEngine.render(e,{...t,imports:this.imports,exports:this.exports,filename:this.config.filename});}catch{throw new A(`Failed to render template '${e}'`,e,t,{availableTemplates:this.config.templateEngine.getAvailableTemplates?.()||[]})}return this}appendContent(e){return this.content+=e,this}prependContent(e){return this.content=e+this.content,this}withImports(e){this.imports.clear();for(let[t,r]of e)this.imports.set(t,r);return this}addImport(e,t){return this.imports.set(e,t),this}addImports(e,t){for(let r of e)this.imports.set(r,t);return this}withExports(e){this.exports.clear();for(let t of e)this.exports.add(t);return this}addExport(e){return this.exports.add(e),this}addExports(e){for(let t of e)this.exports.add(t);return this}withMetadata(e,t){return this.metadata.set(e,t),this}withOptions(e){return this.options={...this.options,...e},this}onBeforeSave(e){return this.beforeSaveHooks.push(e),this}onAfterSave(e){return this.afterSaveHooks.push(e),this}onError(e){return this.errorHooks.push(e),this}build(){let e=this.buildFinalContent();return {filename:this.config.filename,content:e,imports:new Map(this.imports),exports:new Set(this.exports),metadata:Object.fromEntries(this.metadata),templateName:this.options.template}}async save(){let e=this.build();try{for(let i of this.beforeSaveHooks)await i(e);this.options.validation!=="none"&&await this.validateContent(e.content);let t=await this.config.fileManager.writeFile(this.config.filename,e.content,{encoding:this.options.encoding}),r={size:t.size,generationTime:0,writeTime:t.writeTime};for(let i of this.afterSaveHooks)await i(t.path,r);return this.config.logger.debug(`Saved ${this.config.filename} successfully`),t.path}catch(t){for(let r of this.errorHooks)try{await r(t instanceof Error?t:new Error(String(t)),e);}catch(i){this.config.logger.warn(`Error hook failed: ${i instanceof Error?i.message:String(i)}`);}throw t}}buildFinalContent(){let e=[];this.imports.size>0&&this.options.importStrategy!=="none"&&(e.push(this.generateImportStatements()),e.push("")),this.content&&e.push(this.content),this.exports.size>0&&!this.content.includes("export")&&(e.push(""),e.push(this.generateExportStatements()));let t=e.join(`
+`)}isRecoverable(){return this.errors.some(t=>t.isRecoverable())}getRecoverableErrors(){return this.errors.filter(t=>t.isRecoverable())}getNonRecoverableErrors(){return this.errors.filter(t=>!t.isRecoverable())}};});var Ct={};Fe(Ct,{FileBuilder:()=>ze});var ze,Ft=W(()=>{G();ze=class{config;content="";imports=new Map;exports=new Set;metadata=new Map;beforeSaveHooks=[];afterSaveHooks=[];errorHooks=[];options={template:void 0,importStrategy:"auto",validation:"strict",prettify:true,formatting:{indentSize:2,useTabs:false,maxLineLength:100},encoding:"utf-8"};constructor(e){this.config=e;}withContent(e){return this.content=typeof e=="string"?e:e(),this}withTemplate(e,t){if(!this.config.templateEngine)throw new A(`Template engine is required for template rendering. Template: '${e}'`,e,t);this.options.template=e;try{this.content=this.config.templateEngine.render(e,{...t,imports:this.imports,exports:this.exports,filename:this.config.filename});}catch{throw new A(`Failed to render template '${e}'`,e,t,{availableTemplates:this.config.templateEngine.getAvailableTemplates?.()||[]})}return this}appendContent(e){return this.content+=e,this}prependContent(e){return this.content=e+this.content,this}withImports(e){this.imports.clear();for(let[t,r]of e)this.imports.set(t,r);return this}addImport(e,t){return this.imports.set(e,t),this}addImports(e,t){for(let r of e)this.imports.set(r,t);return this}withExports(e){this.exports.clear();for(let t of e)this.exports.add(t);return this}addExport(e){return this.exports.add(e),this}addExports(e){for(let t of e)this.exports.add(t);return this}withMetadata(e,t){return this.metadata.set(e,t),this}withOptions(e){return this.options={...this.options,...e},this}onBeforeSave(e){return this.beforeSaveHooks.push(e),this}onAfterSave(e){return this.afterSaveHooks.push(e),this}onError(e){return this.errorHooks.push(e),this}build(){let e=this.buildFinalContent();return {filename:this.config.filename,content:e,imports:new Map(this.imports),exports:new Set(this.exports),metadata:Object.fromEntries(this.metadata),templateName:this.options.template}}async save(){let e=this.build();try{for(let i of this.beforeSaveHooks)await i(e);this.options.validation!=="none"&&await this.validateContent(e.content);let t=await this.config.fileManager.writeFile(this.config.filename,e.content,{encoding:this.options.encoding}),r={size:t.size,generationTime:0,writeTime:t.writeTime};for(let i of this.afterSaveHooks)await i(t.path,r);return this.config.logger.debug(`Saved ${this.config.filename} successfully`),t.path}catch(t){for(let r of this.errorHooks)try{await r(t instanceof Error?t:new Error(String(t)),e);}catch(i){this.config.logger.warn(`Error hook failed: ${i instanceof Error?i.message:String(i)}`);}throw t}}buildFinalContent(){let e=[];this.imports.size>0&&this.options.importStrategy!=="none"&&(e.push(this.generateImportStatements()),e.push("")),this.content&&e.push(this.content),this.exports.size>0&&!this.content.includes("export")&&(e.push(""),e.push(this.generateExportStatements()));let t=e.join(`
 `);return this.options.prettify&&(t=this.prettifyContent(t)),t}generateImportStatements(){let e=[],t=new Map;for(let[r,i]of this.imports){let n=this.options.importStrategy==="auto"?this.config.fileManager.getRelativeImportPath(this.config.filename,i):i;t.has(n)||t.set(n,[]),t.get(n)?.push(r);}for(let[r,i]of t)if(i.length===1)e.push(`import type { ${i[0]} } from '${r}';`);else {let n=i.sort();if(n.length<=3)e.push(`import type { ${n.join(", ")} } from '${r}';`);else {e.push("import type {");let o="	";n.forEach((c,a)=>{let l=a===n.length-1;e.push(`${o}${c}${l?"":","}`);}),e.push(`} from '${r}';`);}}return e.join(`
 `)}generateExportStatements(){return Array.from(this.exports).sort().map(t=>`export { ${t} };`).join(`
 `)}prettifyContent(e){return e.replace(/\n{3,}/g,`
@@ -11,7 +11,7 @@ import Pr from'yargs';import {hideBin}from'yargs/helpers';import'perf_hooks';imp
 `).replace(/\n{3,}/g,`
 
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l?.choices||[])if(!o[g]){let f=[...t,g],d=De(n,f),h=Be(d);o[g]={elem:void 0,elemSnapshot:h,path:f};}let c={};for(let[a,{elem:l,elemSnapshot:p,path:u}]of Object.entries(o))V(p)?c[a]=ne(s,e,u,p,i):c[a]=ie(s,e,u,p,i);return c}function ht(s){let e=[];for(let t of Object.values(s))"type"in t&&t.type&&e.push(t.type),"binding"in t&&t.binding&&e.push(t.binding);return e}function Qt(s){let e=new Set,t=[];for(let r of s){let i=r.url;e.has(i)||(e.add(i),t.push(r));}return t.sort((r,i)=>r.name.localeCompare(i.name)),t}function Xt(s,e){return !!(s.base==="Extension"||s.base==="http://hl7.org/fhir/StructureDefinition/Extension"||s.url?.includes("/extension/")||s.url?.includes("-extension")||s.name?.toLowerCase().includes("extension")||s.type==="Extension")}async function se(s,e,t){if(!e.url)throw new Error("ValueSet URL is required");let r=X(s,e.url),i=Ge(s,e.url);return {identifier:r,description:e.description,concept:i,compose:i?void 0:e.compose}}async function er(s,e,t){try{let r=N(s),i;if(s.base&&s.base!=="Extension"){let c=s.base.includes("/")?s.base:`http://hl7.org/fhir/StructureDefinition/${s.base}`;i={kind:"complex-type",package:"hl7.fhir.r4.core",version:"4.0.1",name:s.base.split("/").pop()||s.base,url:c};}else i={kind:"complex-type",package:"hl7.fhir.r4.core",version:"4.0.1",name:"Extension",url:"http://hl7.org/fhir/StructureDefinition/Extension"};let n={identifier:r,base:i,description:s.description,dependencies:[],metadata:{isExtension:!0}};if(i&&n.dependencies.push(i),s.elements){let c=ft(e,s,[],s.elements,t);c&&Object.keys(c).length>0&&(n.fields=c,n.dependencies.push(...ht(c)));}let o=re(e,s,t);return o&&o.length>0&&(n.nested=o,n.dependencies.push(...je(o))),n.dependencies=Qt(n.dependencies),n.dependencies=n.dependencies.filter(c=>c.url!==r.url),n}catch(r){return console.warn(`Failed to transform extension ${s.name}: ${r}`),null}}function tr(s,e,t,r){let i=[];e&&i.push(e),t&&i.push(...ht(t)),r&&i.push(...je(r));let n={};for(let a of i)a.url!==s.url&&(n[a.url]=a);let o=new Set(r?.map(a=>a.identifier.url)),c=Object.values(n).filter(a=>nt(s)||!Y(a)?true:!o.has(a.url)).sort((a,l)=>a.url.localeCompare(l.url));return c.length>0?c:void 0}function rr(s,e,t){let r=N(e),i;if(e.base&&e.type!=="Element"){let p=s.resolveFs(s.ensureCanonicalUrl(e.base));if(!p)throw new Error(`Base resource not found '${e.base}' for '${e.url}'`);i=N(p);}let n=ft(s,e,[],e.elements,t),o=re(s,e,t),c=tr(r,i,n,o),a={identifier:r,base:i,fields:n,nested:o,description:e.description,dependencies:c},l=gt(s,e,t);return [a,...l]}async function oe(s,e,t){let r=[];N(e);if(Xt(e)){let n=await er(e,s,t);return n&&r.push(n),r}return rr(s,e,t)}var R=class{cache=new Map;config;cacheDir;constructor(e){this.config={enablePersistence:true,cacheDir:".typeschema-cache",maxAge:1440*60*1e3,validateCached:true,...e},this.config.enablePersistence&&this.config.cacheDir&&(this.cacheDir=this.config.cacheDir);}async set(e){let t=this.generateKey(e.identifier);this.cache.set(t,e),this.config.enablePersistence&&this.cacheDir&&await this.persistSchema(e);}get(e){let t=this.generateKey(e);return this.cache.get(t)||null}getByUrl(e){for(let t of this.cache.values())if(t.identifier.url===e)return t;return null}has(e){let t=this.generateKey(e);return this.cache.has(t)}hasByUrl(e){for(let t of this.cache.values())if(t.identifier.url===e)return  true;return  false}delete(e){let t=this.generateKey(e);return this.cache.delete(t)}deleteByUrl(e){for(let[t,r]of this.cache.entries())if(r.identifier.url===e)return this.cache.delete(t);return  false}getByPackage(e){let t=[];for(let r of this.cache.values())r.identifier.package===e&&t.push(r);return t}getByKind(e){let t=[];for(let r of this.cache.values())r.identifier.kind===e&&t.push(r);return t}setMany(e){for(let t of e)this.set(t);}clear(){this.cache.clear();}generateKey(e){return `${e.package}:${e.version}:${e.kind}:${e.name}`}async initialize(){this.config.enablePersistence&&this.cacheDir&&(existsSync(this.cacheDir)||mkdirSync(this.cacheDir,{recursive:true}),await this.loadFromDisk());}async loadFromDisk(){if(!(!this.cacheDir||!existsSync(this.cacheDir)))try{let t=(await readdir(this.cacheDir)).filter(r=>r.endsWith(".typeschema.json"));for(let r of t){let i=join(this.cacheDir,r),n=await stat(i);if(this.config.maxAge&&Date.now()-n.mtimeMs>this.config.maxAge){await unlink(i);continue}try{let o=await readFile(i,"utf-8"),c=JSON.parse(o);if(this.config.validateCached&&!c.schema?.identifier)continue;let a=this.generateKey(c.schema.identifier);this.cache.set(a,c.schema);}catch(o){console.warn(`Failed to load cached schema from ${r}:`,o);}}}catch(e){console.warn("Failed to load cached schemas from disk:",e);}}async persistSchema(e){if(!this.cacheDir)return;existsSync(this.cacheDir)||mkdirSync(this.cacheDir,{recursive:true});let t={schema:e,timestamp:Date.now(),version:e.identifier.version},r=`${e.identifier.package}-${e.identifier.version}-${e.identifier.kind}-${e.identifier.name}.typeschema.json`.replace(/[^a-zA-Z0-9.-]/g,"_"),i=join(this.cacheDir,r);try{await writeFile(i,JSON.stringify(t,null,2),"utf-8");}catch(n){console.warn(`Failed to persist schema to ${i}:`,n);}}async clearDisk(){if(!(!this.cacheDir||!existsSync(this.cacheDir)))try{let t=(await readdir(this.cacheDir)).filter(r=>r.endsWith(".typeschema.json"));for(let r of t)await unlink(join(this.cacheDir,r));}catch(e){console.warn("Failed to clear cache directory:",e);}}};var I=class{manager;options;cacheConfig;cache;logger;constructor(e={},t){this.options={verbose:false,...e},this.manager=e.manager||CanonicalManager({packages:[],workingDir:"tmp/fhir"}),this.cacheConfig=t,this.logger=e.logger||w({verbose:this.options.verbose,prefix:"TypeSchema"});}async initializeCache(){this.cacheConfig&&!this.cache&&(this.cache=new R(this.cacheConfig),await this.cache.initialize());}async registerFromPackageMetas(e){let t=e.map(r=>`${r.name}${r.version}`);return this.logger?.step(`Loading FHIR packages: ${t.join(", ")}`),await this.manager.init(),j(this.manager)}generateFhirSchemas(e){this.logger?.progress(`Converting ${e.length} StructureDefinitions to FHIRSchemas`);let t=this.applyStructureDefinitionTreeshaking(e),r=[],i=0,n=0;for(let o of t)try{let c=ct.translate(o);r.push(c),i++,this.logger?.debug(`Converted StructureDefinition: ${o.name||o.id} (${o.resourceType})`);}catch(c){n++,this.logger?.warn(`Failed to convert StructureDefinition ${o.name||o.id}: ${c instanceof Error?c.message:String(c)}`);}return this.logger?.success(`FHIR Schema conversion completed: ${i}/${t.length} successful, ${n} failed`),r}async generateValueSetSchemas(e,t){e.length>0&&this.logger?.debug(`${e.length} ValueSets available for enum extraction`);let r=await j(this.manager,t),i=[];if(e.length>0){this.logger?.progress(`Converting ${e.length} ValueSets to TypeSchema`);let n=0,o=0;for(let c of e)try{let a=await se(r,c,t);a&&(i.push(a),n++,this.logger?.debug(`Converted ValueSet: ${c.name||c.id}`));}catch(a){o++,this.logger?.warn(`Failed to convert ValueSet ${c.name||c.id}: ${a instanceof Error?a.message:String(a)}`);}this.logger?.success(`ValueSet conversion completed: ${n}/${e.length} successful, ${o} failed`);}return i}async generateFromPackage(e,t,r){if(await this.initializeCache(),this.cache&&!(this.cacheConfig?.forceRegenerate??false)){let l=this.cache.getByPackage(e);if(l.length>0)return this.logger?.info(`Using cached TypeSchemas for package: ${e} (${l.length} schemas)`),l}let i={name:e,version:t||"latest"},n=await this.registerFromPackageMetas([i]),o=await this.generateValueSetSchemas(n.allVs(),r),a=[...(await Promise.all(n.allFs().map(async l=>await oe(n,l,r)))).flat(),...o];if(this.cache)for(let l of a)await this.cache.set(l);return a}applyStructureDefinitionTreeshaking(e){let t=this.options.treeshake;if(!t||t.length===0)return e;this.logger?.info(`Applying treeshaking filter for ResourceTypes: ${t.join(", ")}`);let r=new Map,i=new Map,n=new Map;for(let p of e){let u=p.name||p.id;u&&(r.set(u,p),i.set(u,new Set),n.set(u,new Set));}for(let p of e){let u=p.name||p.id;if(!u)continue;let{realDeps:g,refTargets:f}=this.extractStructureDefinitionDependenciesWithReferences(p);i.set(u,new Set(g)),n.set(u,new Set(f));}let o=new Set;for(let p of t)r.has(p)?o.add(p):this.logger?.warn(`ResourceType '${p}' not found in structure definitions`);let c=(p,u=new Set)=>{if(u.has(p)||!i.has(p))return;u.add(p);let g=i.get(p)||new Set;for(let f of Array.from(g))r.has(f)&&(o.add(f),c(f,u));};for(let p of Array.from(o))c(p);let a=e.filter(p=>{let u=p.name||p.id;return u&&o.has(u)}),l=new Set;for(let p of e){let u=p.name||p.id;u&&!o.has(u)&&Array.from(n.values()).some(f=>f.has(u))&&l.add(u);}return l.size>0&&this.logger?.info(`Excluded reference-only targets: ${Array.from(l).join(", ")}`),this.logger?.success(`Treeshaking completed: kept ${a.length}/${e.length} structure definitions`),a}extractStructureDefinitionDependenciesWithReferences(e){let t=new Set,r=new Set;if(e.baseDefinition){let i=this.extractResourceNameFromUrl(e.baseDefinition);i&&t.add(i);}if(e.snapshot?.element||e.differential?.element){let i=e.snapshot?.element||e.differential?.element;for(let n of i)if(n.type)for(let o of n.type){if(o.code&&(t.add(o.code),o.code==="Reference"&&o.targetProfile))for(let c of o.targetProfile){let a=this.extractResourceNameFromUrl(c);a&&r.add(a);}if(o.profile)for(let c of o.profile){let a=this.extractResourceNameFromUrl(c);a&&t.add(a);}}}return {realDeps:Array.from(t),refTargets:Array.from(r)}}extractResourceNameFromUrl(e){let t=e.match(/\/([^/]+)$/);return t?t[1]??null:null}};var D=class{options;constructor(e={}){this.options={format:"auto",validate:true,strict:false,...e};}async parseFromFile(e){let t=await readFile(e,"utf-8"),r=this.options.format==="auto"?this.detectFormat(t,e):this.options.format;return this.parseFromString(t,r)}async parseFromString(e,t){let r=t||this.detectFormat(e),i;return r==="ndjson"?i=this.parseNDJSON(e):i=this.parseJSON(e),this.options.validate&&this.validateSchemas(i),i}async parseFromFiles(e){let t=[];for(let r of e){let i=await this.parseFromFile(r);t.push(...i);}return t}parseSchema(e){if(!e.identifier)throw new Error("TypeSchema must have an identifier");if(!this.isValidIdentifier(e.identifier))throw new Error("TypeSchema identifier is invalid");return e}findByIdentifier(e,t){return e.filter(r=>this.matchesIdentifier(r.identifier,t))}findByUrl(e,t){return e.find(r=>r.identifier.url===t)}findByKind(e,t){return e.filter(r=>r.identifier.kind===t)}findByPackage(e,t){return e.filter(r=>r.identifier.package===t)}detectFormat(e,t){if(t){if(t.endsWith(".ndjson"))return "ndjson";if(t.endsWith(".json"))return "json"}let r=e.trim();if(r.includes(`
 `)){let i=r.split(`
 `).filter(n=>n.trim());if(i.length>1)try{return i[0]&&JSON.parse(i[0]),"ndjson"}catch{}}return "json"}parseNDJSON(e){let t=[],r=e.split(`
 `).filter(i=>i.trim());for(let i of r)try{let n=JSON.parse(i);t.push(this.parseSchema(n));}catch(n){if(this.options.strict)throw new Error(`Failed to parse NDJSON line: ${n}`)}return t}parseJSON(e){try{let t=JSON.parse(e);return Array.isArray(t)?t.map(r=>this.parseSchema(r)):[this.parseSchema(t)]}catch(t){throw new Error(`Failed to parse JSON: ${t}`)}}validateSchemas(e){for(let t of e){if(!t.identifier)throw new Error("Schema missing identifier");if(!this.isValidIdentifier(t.identifier))throw new Error(`Invalid identifier in schema: ${JSON.stringify(t.identifier)}`)}}isValidIdentifier(e){return typeof e=="object"&&e!==null&&typeof e.kind=="string"&&typeof e.package=="string"&&typeof e.version=="string"&&typeof e.name=="string"&&typeof e.url=="string"}matchesIdentifier(e,t){return (!t.kind||e.kind===t.kind)&&(!t.package||e.package===t.package)&&(!t.version||e.version===t.version)&&(!t.name||e.name===t.name)&&(!t.url||e.url===t.url)}};var vt=async(s,e)=>{let t=[];for(let r of s.allFs())t.push(...await oe(s,r,e));for(let r of s.allVs())t.push(await se(s,r));return t};var xt=s=>{let e={};for(let t of s){let r=t.identifier.package;e[r]||(e[r]=[]),e[r].push(t);}for(let[t,r]of Object.entries(e))r.sort((i,n)=>i.identifier.name.localeCompare(n.identifier.name));return e},cr=s=>{let e=s.filter(Ne),t=[];for(let n of e)n.base&&t.push({parent:n.base,child:n.identifier});let r=[...t],i=n=>{let o=t.filter(a=>a.parent.name===n.name).map(a=>a.child),c=[];for(let a of o)c.push(...i(a));return [...o,...c]};for(let n of t){let o=i(n.child);for(let c of o)t.some(a=>a.parent.name===n.parent.name&&a.child.name===c.name)||r.push({parent:n.parent,child:c});}return r},Tt=s=>{let e={},t=p=>{let u=p.identifier.url;e[u]||(e[u]={}),e[u][p.identifier.package]=p;};for(let p of s)t(p);let r=cr(s),i=p=>e[p.url]?.[p.package],n=p=>r.filter(u=>u.parent.name===p.name).map(u=>u.child),o=p=>{let u=[],g=p;for(;g;){u.push(g);let f=g.base;if(f===void 0)break;let d=i(f);if(!d)throw new Error(`Failed to resolve base type: ${u.map(h=>`${h.identifier.url} (${h.identifier.kind})`).join(", ")}`);g=d;}return u};return {_schemaIndex:e,_relations:r,collectComplexTypes:()=>s.filter(ot),collectResources:()=>s.filter(Ne),collectLogicalModels:()=>s.filter(at),collectProfiles:()=>s.filter(Q),resolve:i,resourceChildren:n,hierarchy:o,findLastSpecialization:p=>{let u=i(p);if(!u)return p;let g=o(u).find(f=>f.identifier.kind!=="profile");if(!g)throw new Error(`No non-constraint schema found in hierarchy for ${p.name}`);return g.identifier},flatProfile:p=>{let u=o(p),g=u.filter(m=>m.identifier.kind==="profile"),f=u.find(m=>m.identifier.kind!=="profile");if(!f)throw new Error(`No non-constraint schema found in hierarchy for ${p.identifier.name}`);let d={};for(let m of g.slice().reverse()){let C=m;if(C.fields)for(let[k,T]of Object.entries(C.fields))d[k]?d[k]={...d[k],...T}:d[k]={...T};}let h={};for(let m of g.flatMap(C=>C.dependencies??[]))h[m.url]=m;let x=Object.values(h);return {...p,base:f.identifier,fields:d,dependencies:x}},isWithMetaField:p=>o(p).filter(L).some(u=>(console.log(u.fields?.meta),u.fields?.meta!==void 0))}};G();var ue=class{constructor(e){this.options=e;}handleError(e,t){e instanceof S?this.handleGeneratorError(e,t):this.handleUnknownError(e,t);}handleBatchErrors(e){let t=e.filter(i=>i instanceof S),r=e.filter(i=>!(i instanceof S));t.length>0&&this.reportBatchErrors(t),r.forEach(i=>{this.handleUnknownError(i);});}handleGeneratorError(e,t){switch(this.options.outputFormat){case "json":this.reportErrorAsJson(e);break;case "structured":this.reportErrorStructured(e);break;default:this.reportErrorToConsole(e);}}handleUnknownError(e,t){this.options.logger.error("Unexpected error occurred:",e),this.options.verbose&&(this.options.logger.error(`
@@ -34,11 +34,11 @@ ${i}`:r}filterAndSortSchemas(e){return this.collectedValueSets=this.collectValue
 `)||"",i=[];return this.options.includeDocuments&&(i.push("/**"),i.push(` * ${e.identifier.name} value set`),e.description&&i.push(` * ${e.description}`),e.valueset?.url&&i.push(` * @see ${e.valueset.url}`),e.identifier.package&&i.push(` * @package ${e.identifier.package}`),i.push(" * @generated This file is auto-generated. Do not edit manually."),i.push(" */"),i.push("")),i.push(`export const ${t}Values = [`),r&&i.push(r),i.push("] as const;"),i.push(""),i.push(`export type ${t} = typeof ${t}Values[number];`),this.tsOptions.includeValueSetHelpers&&(i.push(""),i.push(`export const isValid${t} = (value: string): value is ${t} =>`),i.push(`  ${t}Values.includes(value as ${t});`)),i.join(`
 `)}async generateValueSetFiles(){if(!(!this.tsOptions.generateValueSets||this.collectedValueSets.size===0)){for(let[e,t]of this.collectedValueSets){let r=this.generateValueSetFile(t),i=`valuesets/${e}.ts`;await this.fileManager.writeFile(i,r),this.logger.info(`Generated value set: ${i}`);}await this.generateValueSetIndexFile();}}async generateValueSetIndexFile(){let e=[];this.tsOptions.includeDocuments&&(e.push("/**"),e.push(" * FHIR Value Sets"),e.push(" * This file re-exports all generated value sets."),e.push(" * "),e.push(" * @generated This file is auto-generated. Do not edit manually."),e.push(" */"),e.push(""));let t=Array.from(this.collectedValueSets.keys()).sort();for(let i of t)e.push(`export * from './${i}.js';`);let r=e.join(`
 `);await this.fileManager.writeFile("valuesets/index.ts",r),this.logger.info(`Generated valuesets/index.ts with ${this.collectedValueSets.size} value sets`);}async generateMainIndexFile(){if(!this.options.generateIndex)return;let e=[];this.tsOptions.includeDocuments&&(e.push("/**"),e.push(" * FHIR R4 TypeScript Types"),e.push(" * Generated from FHIR StructureDefinitions"),e.push(" * "),e.push(" * @generated This file is auto-generated. Do not edit manually."),e.push(" */"),e.push("")),e.push('export * from "./utilities";'),this.tsOptions.generateValueSets&&this.collectedValueSets.size>0&&(e.push(""),e.push("// Value Sets"),e.push('export * from "./valuesets/index";'));let t=e.join(`
-`);await this.fileManager.writeFile("index.ts",t),this.logger.info(`Generated index.ts with type exports${this.tsOptions.generateValueSets&&this.collectedValueSets.size>0?" and value sets":""}`);}};var Mt=s=>s.split(/(?<=[a-z])(?=[A-Z])|[-_.\s]/).filter(Boolean),U=s=>Mt(s).map(e=>e.toLowerCase()).join("-"),mr=s=>{if(s.length===0)throw new Error("Empty string");return s[0]?.toUpperCase()+s.substring(1).toLowerCase()};var z=s=>Mt(s).map(mr).join("");var ye=s=>!s||s.length===0?s:s.charAt(0).toUpperCase()+s.slice(1),Nt=s=>s.map(e=>ye(e));var Ke=class{opts;currentDir;currentFileDescriptor;writtenFilesSet=new Set;constructor(e){this.opts=e,this.currentDir=e.outputDir;}logger(){return this.opts.logger}cd(e,t){this.currentDir=e.startsWith("/")?q.join(this.opts.outputDir,e):q.join(this.currentDir,e),F.existsSync(this.currentDir)||F.mkdirSync(this.currentDir,{recursive:true}),this.logger()?.debug(`cd '${this.currentDir}'`),t();}cat(e,t){if(this.currentFileDescriptor)throw new Error("Can't open file in file");if(e.includes("/"))throw new Error(`Change file path separatly: ${e}`);let r=`${this.currentDir}/${e}`;try{this.currentFileDescriptor=F.openSync(r,"w"),this.writtenFilesSet.add(e),this.logger()?.debug(`cat > '${r}'`),t();}finally{this.currentFileDescriptor&&F.closeSync(this.currentFileDescriptor),this.currentFileDescriptor=void 0;}}write(e){if(!this.currentFileDescriptor)throw new Error("No file opened");F.writeSync(this.currentFileDescriptor,e);}generate(e){throw new Error("Not implemented")}writtenFiles(){return Array.from(this.writtenFilesSet)}},be=class extends Ke{currentIndent=0;indent(){this.currentIndent+=this.opts.tabSize;}deindent(){this.currentIndent-=this.opts.tabSize;}writeIndent(){this.write(" ".repeat(this.currentIndent));}line(...e){e.length===0?this.write(`
+`);await this.fileManager.writeFile("index.ts",t),this.logger.info(`Generated index.ts with type exports${this.tsOptions.generateValueSets&&this.collectedValueSets.size>0?" and value sets":""}`);}};var Mt=s=>s.split(/(?<=[a-z])(?=[A-Z])|[-_.\s]/).filter(Boolean),U=s=>Mt(s).map(e=>e.toLowerCase()).join("-"),mr=s=>{if(s.length===0)throw new Error("Empty string");return s[0]?.toUpperCase()+s.substring(1).toLowerCase()};var _=s=>Mt(s).map(mr).join("");var ye=s=>!s||s.length===0?s:s.charAt(0).toUpperCase()+s.slice(1),Nt=s=>s.map(e=>ye(e));var Ke=class{opts;currentDir;currentFileDescriptor;writtenFilesSet=new Set;constructor(e){this.opts=e,this.currentDir=e.outputDir;}logger(){return this.opts.logger}cd(e,t){this.currentDir=e.startsWith("/")?q.join(this.opts.outputDir,e):q.join(this.currentDir,e),F.existsSync(this.currentDir)||F.mkdirSync(this.currentDir,{recursive:true}),this.logger()?.debug(`cd '${this.currentDir}'`),t();}cat(e,t){if(this.currentFileDescriptor)throw new Error("Can't open file in file");if(e.includes("/"))throw new Error(`Change file path separatly: ${e}`);let r=`${this.currentDir}/${e}`;try{this.currentFileDescriptor=F.openSync(r,"w"),this.writtenFilesSet.add(e),this.logger()?.debug(`cat > '${r}'`),t();}finally{this.currentFileDescriptor&&F.closeSync(this.currentFileDescriptor),this.currentFileDescriptor=void 0;}}write(e){if(!this.currentFileDescriptor)throw new Error("No file opened");F.writeSync(this.currentFileDescriptor,e);}generate(e){throw new Error("Not implemented")}writtenFiles(){return Array.from(this.writtenFilesSet)}},be=class extends Ke{currentIndent=0;indent(){this.currentIndent+=this.opts.tabSize;}deindent(){this.currentIndent-=this.opts.tabSize;}writeIndent(){this.write(" ".repeat(this.currentIndent));}line(...e){e.length===0?this.write(`
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-`);for(let r of t)this.line(this.opts.commentLinePrefix,r);}debugComment(...e){this.opts.withDebugComment&&(e=e.map(t=>typeof t=="string"?t:JSON.stringify(t,null,2)),this.comment(...e));}disclaimer(){return ["WARNING: This file is autogenerated by @atomic-ehr/codegen.","GitHub: https://github.com/orgs/atomic-ehr/repositories","Any manual changes made to this file may be overwritten."]}generateDisclaimer(){this.disclaimer().forEach(e=>this.comment(e)),this.line();}indentBlock(e){this.indent(),e(),this.deindent();}curlyBlock(e,t,r){this.line(`${e.filter(Boolean).join(" ")} {`),this.indent(),t(),this.deindent(),this.line(`}${r?.filter(Boolean).join(" ")??""}`);}squareBlock(e,t,r){this.line(`${e.filter(Boolean).join(" ")} [`),this.indent(),t(),this.deindent(),this.line(`]${r?.filter(Boolean).join(" ")??""}`);}};var Ot={boolean:"boolean",instant:"string",time:"string",date:"string",dateTime:"string",decimal:"number",integer:"number",unsignedInt:"number",positiveInt:"number",integer64:"number",base64Binary:"string",uri:"string",url:"string",canonical:"string",oid:"string",uuid:"string",string:"string",code:"string",markdown:"string",id:"string",xhtml:"string"},yr=s=>U(s),Dt=s=>s.kind==="profile"?`${v(s)}_profile`:z(s.name),br=s=>`${Dt(s)}.ts`,Ze=(s,e=true)=>{if(!s)return;let t=s.split("/").pop();if(t&&(e&&t.includes("#")&&(t=t.split("#")[0]),!!t))return /^\d/.test(t)&&(t=`number_${t}`),Se(t)},v=s=>{if(s.kind==="nested"){let e=s.url,t=Ze(e,false);if(!t)return "";let[r,i]=t.split("#"),n=Nt((i??"").split(".")).join("");return Se([r,n].join(""))}return Se(s.name)},B=s=>Se(s),Se=s=>(new Set(["abstract","any","as","async","await","boolean","bigint","break","case","catch","class","const","constructor","continue","debugger","declare","default","delete","do","else","enum","export","extends","extern","false","finally","for","function","from","get","goto","if","implements","import","in","infer","instanceof","interface","keyof","let","module","namespace","never","new","null","number","object","of","override","private","protected","public","readonly","return","satisfies","set","static","string","super","switch","this","throw","true","try","type","typeof","unknown","var","void","while"]).has(s)&&(s=`${s}_`),s.replace(/[- ]/g,"_")),ve=class extends be{tsImportType(e,...t){this.lineSM(`import type { ${t.join(", ")} } from "${e}"`);}generateFhirPackageIndexFile(e){this.cat("index.ts",()=>{let t=e.map(r=>({identifier:r.identifier,tsPackageName:Dt(r.identifier),resourceName:v(r.identifier)})).sort((r,i)=>r.resourceName.localeCompare(i.resourceName));t=Array.from(new 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g=a.type.name;a.type.kind==="nested"&&(g=v(a.type)),a.type.kind==="primitive-type"&&(g=Ot[a.type.name]??"string"),t.identifier.name==="Reference"&&l==="reference"&&(g="`${T}/${string}`"),a.reference?.length&&(g=`Reference<${a.reference.map(d=>`"${d.name}"`).join(" | ")}>`),a.enum&&(g=a.enum.map(f=>`"${f}"`).join(" | ")),this.lineSM(`${l}${p}:`,`${g}${u}`),["resource","complex-type"].includes(t.identifier.kind)&&this.addFieldExtension(c,a);}});}generateNestedTypes(e,t){if(t.nested)for(let r of t.nested)this.generateType(e,r);}generateProfileType(e,t){let r=v(t.identifier);this.debugComment("identifier",t.identifier),this.debugComment("base",t.base),this.curlyBlock(["export","interface",r],()=>{if(this.lineSM(`__profileUrl: "${t.identifier.url}"`),this.line(),!!st(t))for(let[i,n]of Object.entries(t.fields??{})){if(!$(n))continue;this.debugComment(i,n);let o=B(i),c;if(n.type.kind==="nested")c=v(n.type);else if(n.enum)c=n.enum.map(a=>`'${a}'`).join(" | ");else if(n.reference&&n.reference.length>0){let a=e.findLastSpecialization(t.identifier),l=e.resolve(a);if(!L(l))throw new Error(`Invalid specialization for ${t.identifier}`);let p=l.fields?.[i];if(p===void 0||!$(p))throw new Error(`Invalid field declaration for ${i}`);let u=(p.reference??[]).map(f=>f.name),g=n.reference.map(f=>{let d=e.findLastSpecialization(f);return d.name!==f.name?`"${d.name}" /*${f.name}*/`:`'${f.name}'`}).join(" | ");u.length===1&&u[0]==="Resource"&&g!=='"Resource"'?c=`Reference<"Resource" /* ${g} */ >`:c=`Reference<${g}>`;}else c=Ot[n.type.name]??n.type.name;this.lineSM(`${o}${n.required?"":"?"}: ${c}${n.array?"[]":""}`);}}),this.line();}generateAttachProfile(e){let t=v(e.base),r=v(e.identifier),i=Object.entries(e.fields||{}).filter(([n,o])=>o&&$(o)&&o.type!==void 0).map(([n])=>B(n));this.curlyBlock([`export const attach_${r} =`,`(resource: ${t}, profile: ${r}): 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d=`reference_pred_${l}`;this.curlyBlock(["const",d,"=","(ref?: Reference)","=>"],()=>{this.line("return !ref"),this.indentBlock(()=>{f.forEach(x=>{this.line(`|| ref.reference?.startsWith('${x}/')`);}),this.line(";");});});let h=p?.required?"":`!resource.${l} || `;p.array?h+=`resource.${l}.every( (ref) => ${d}(ref) )`:h+=`${d}(resource.${l})`,this.curlyBlock(["if (",h,")"],()=>{this.lineSM(`throw new Error("'${a}' has different references in profile and specialization")`);}),this.line(),c[a]=true;}}),this.curlyBlock(["return"],()=>{this.line(`__profileUrl: '${t.identifier.url}',`),n.forEach(a=>{let l=B(a);c[a]?this.line(`${l}:`,`resource.${l} as 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e=()=>s.writtenFiles().map(t=>({path:q.normalize(q.join(s.opts.outputDir,t)),filename:t.replace(/^.*[\\/]/,""),content:"",exports:[],size:0,timestamp:new Date}));return {generate:async t=>{let r=Tt(t);return s.generate(r),e()},setOutputDir:t=>s.opts.outputDir=t,build:async t=>e()}},_=class{schemas=[];options;generators=new Map;cache;pendingOperations=[];typeSchemaGenerator;logger;packages=[];progressCallback;typeSchemaConfig;constructor(e={}){this.options={outputDir:e.outputDir||"./generated",verbose:e.verbose??false,overwrite:e.overwrite??true,cache:e.cache??true,cleanOutput:e.cleanOutput??true,typeSchemaConfig:e.typeSchemaConfig,manager:e.manager||null,throwException:e.throwException||false},this.typeSchemaConfig=e.typeSchemaConfig,this.logger=e.logger||w({verbose:this.options.verbose,prefix:"API"}),this.options.cache&&(this.cache=new R(this.typeSchemaConfig));}fromPackage(e,t){return this.packages.push(it({name:e,version:t||"latest"})),this}fromFiles(...e){this.logger.debug(`Loading from ${e.length} TypeSchema files`);let t=this.loadFromFiles(e);return this.pendingOperations.push(t),this}fromSchemas(e){return this.logger.debug(`Adding ${e.length} TypeSchemas to generation`),this.schemas=[...this.schemas,...e],this}typescript(e={}){let t=`${this.options.outputDir}/types`,r=new H({outputDir:t,moduleFormat:e.moduleFormat||"esm",generateIndex:e.generateIndex??true,includeDocuments:e.includeDocuments??true,namingConvention:e.namingConvention||"PascalCase",includeExtensions:e.includeExtensions??false,includeProfiles:e.includeProfiles??false,generateValueSets:e.generateValueSets??false,includeValueSetHelpers:e.includeValueSetHelpers??false,valueSetStrengths:e.valueSetStrengths??["required"],logger:this.logger.child("TS"),valueSetMode:e.valueSetMode??"required-only",valueSetDirectory:e.valueSetDirectory??"valuesets",verbose:this.options.verbose,validate:true,overwrite:this.options.overwrite});return this.generators.set("typescript",r),this.logger.debug(`Configured TypeScript generator (${e.moduleFormat||"esm"})`),this}typescript2(e){let t={outputDir:q.join(this.options.outputDir,"/types"),tabSize:4,withDebugComment:false,commentLinePrefix:"//"},r={logger:this.logger,...t,...e},i=xr(new ve(r));return this.generators.set("typescript2",i),this.logger.debug(`Configured TypeScript2 generator (${JSON.stringify(r,void 0,2)})`),this}onProgress(e){return this.progressCallback=e,this}outputTo(e){this.logger.debug(`Setting output directory: ${e}`),this.options.outputDir=e;for(let t of this.generators.values())t.setOutputDir&&t.setOutputDir(e);return this}verbose(e=true){return this.options.verbose=e,this.logger?.configure({verbose:e}),this}throwException(e=true){return this.options.throwException=e,this}cleanOutput(e=true){return this.options.cleanOutput=e,this}async generate(){let e=performance.now(),t={success:false,outputDir:this.options.outputDir,filesGenerated:[],errors:[],warnings:[],duration:0};if(this.logger.debug(`Starting generation with 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{...t,success:t.errors.length===0,duration:performance.now()-e}}async build(){let e={};for(let[t,r]of this.generators.entries())r.build&&(e[t]=await r.build(this.schemas));return e}reset(){return this.schemas=[],this.generators.clear(),this.progressCallback=void 0,this}getSchemas(){return [...this.schemas]}getGenerators(){return Array.from(this.generators.keys())}async loadFromFiles(e){this.typeSchemaGenerator||(this.typeSchemaGenerator=new I({verbose:this.options.verbose,logger:this.logger.child("Schema"),treeshake:this.typeSchemaConfig?.treeshake},this.typeSchemaConfig));let r=await new D({format:"auto"}).parseFromFiles(e);this.schemas=[...this.schemas,...r],this.cache&&this.cache.setMany(r);}async executeGenerators(e,t){for(let[r,i]of this.generators.entries()){this.logger.info(`Generating ${r}...`);try{let n=await i.generate(t);e.filesGenerated.push(...n.map(o=>o.path||o.filename)),this.logger.info(`Generating ${r} finished successfully`);}catch(n){e.errors.push(`${r} generator failed: ${n instanceof Error?n.message:String(n)}`);}}}};var Ye={outputDir:"./generated",verbose:false,overwrite:true,validate:true,cache:true,cleanOutput:true,typescript:{moduleFormat:"esm",generateIndex:true,includeDocuments:false,namingConvention:"PascalCase",strictMode:true,includeProfiles:true,includeExtensions:false,includeCodeSystems:false,includeOperations:false,generateValueSets:false,valueSetDirectory:"valuesets",valueSetMode:"required-only",valueSetStrengths:["required"],includeValueSetHelpers:false,fhirVersion:"R4",resourceTypes:[],maxDepth:10,profileOptions:{generateKind:"interface",includeConstraints:true,includeDocumentation:true,strictMode:false,subfolder:"profiles"},generateBuilders:false,builderOptions:{includeValidation:true,includeFactoryMethods:true,includeInterfaces:true,generateNestedBuilders:true,includeHelperMethods:true,supportPartialBuild:true,includeJSDoc:true,generateFactories:true,includeTypeGuards:true,handleChoiceTypes:true,generateArrayHelpers:true},validatorOptions:{includeCardinality:true,includeTypes:true,includeConstraints:true,includeInvariants:false,validateRequired:true,allowAdditional:false,strictValidation:false,collectMetrics:false,generateAssertions:true,generatePartialValidators:true,optimizePerformance:true,includeJSDoc:true,generateCompositeValidators:true},guardOptions:{includeRuntimeValidation:true,includeErrorMessages:true,treeShakeable:true,targetTSVersion:"5.0",strictGuards:false,includeNullChecks:true,verbose:false}},typeSchema:{enablePersistence:true,cacheDir:".typeschema-cache",maxAge:1440*60*1e3,validateCached:true,forceRegenerate:false,shareCache:true,cacheKeyPrefix:"",treeshake:[],singleFile:false,profiles:{autoDetect:true}},packages:[],files:[],$schema:""},Te=["atomic-codegen.config.ts","atomic-codegen.config","atomic-codegen.config.json",".atomic-codegenrc","atomic-codegen.json",".atomic-codegen.json","codegen.config.json","codegen.json"],Qe=class{validate(e){let t={valid:true,errors:[],warnings:[]};if(!e||typeof e!="object")return t.valid=false,t.errors.push({path:"root",message:"Configuration must be an object",value:e}),t;let r=e;r.outputDir!==void 0&&typeof r.outputDir!="string"&&t.errors.push({path:"outputDir",message:"outputDir must be a string",value:r.outputDir});let i=["verbose","overwrite","validate","cache"];for(let n of i)r[n]!==void 0&&typeof r[n]!="boolean"&&t.errors.push({path:n,message:`${n} must be a boolean`,value:r[n]});if(r.typescript!==void 0){let n=this.validateTypeScriptConfig(r.typescript);t.errors.push(...n);}if(r.typeSchema!==void 0){let n=this.validateTypeSchemaConfig(r.typeSchema);t.errors.push(...n);}return r.packages!==void 0&&(Array.isArray(r.packages)?r.packages.forEach((n,o)=>{typeof n!="string"&&t.errors.push({path:`packages[${o}]`,message:"package name must be a string",value:n});}):t.errors.push({path:"packages",message:"packages must be an array",value:r.packages})),r.files!==void 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i=["generateIndex","includeDocuments","strictMode","includeProfiles","includeExtensions","includeCodeSystems","includeOperations","generateValueSets","includeValueSetHelpers"];for(let n of i)r[n]!==void 0&&typeof r[n]!="boolean"&&t.push({path:`typescript.${n}`,message:`${n} must be a boolean`,value:r[n]});if(r.validatorOptions!==void 0){let n=this.validateValidatorOptions(r.validatorOptions);t.push(...n);}if(r.guardOptions!==void 0){let n=this.validateGuardOptions(r.guardOptions);t.push(...n);}if(r.profileOptions!==void 0){let n=this.validateProfileOptions(r.profileOptions);t.push(...n);}return t}validateValidatorOptions(e){let t=[];if(typeof e!="object"||e===null)return t.push({path:"typescript.validatorOptions",message:"validatorOptions must be an object",value:e}),t;let r=e,i=["includeCardinality","includeTypes","includeConstraints","includeInvariants","validateRequired","allowAdditional","strictValidation","collectMetrics","generateAssertions","generatePartialValidators","optimizePerformance","includeJSDoc","generateCompositeValidators"];for(let n of i)r[n]!==void 0&&typeof r[n]!="boolean"&&t.push({path:`typescript.validatorOptions.${n}`,message:`${n} must be a boolean`,value:r[n]});return t}validateGuardOptions(e){let t=[];if(typeof e!="object"||e===null)return t.push({path:"typescript.guardOptions",message:"guardOptions must be an object",value:e}),t;let r=e;r.targetTSVersion!==void 0&&(["3.8","4.0","4.5","5.0"].includes(r.targetTSVersion)||t.push({path:"typescript.guardOptions.targetTSVersion",message:'targetTSVersion must be one of: "3.8", "4.0", "4.5", "5.0"',value:r.targetTSVersion}));let i=["includeRuntimeValidation","includeErrorMessages","treeShakeable","strictGuards","includeNullChecks","verbose"];for(let n of i)r[n]!==void 0&&typeof r[n]!="boolean"&&t.push({path:`typescript.guardOptions.${n}`,message:`${n} must be a boolean`,value:r[n]});return t}validateProfileOptions(e){let t=[];if(typeof e!="object"||e===null)return t.push({path:"typescript.profileOptions",message:"profileOptions must be an object",value:e}),t;let r=e;r.generateKind!==void 0&&(["interface","type","both"].includes(r.generateKind)||t.push({path:"typescript.profileOptions.generateKind",message:'generateKind must be "interface", "type", or "both"',value:r.generateKind})),r.subfolder!==void 0&&typeof r.subfolder!="string"&&t.push({path:"typescript.profileOptions.subfolder",message:"subfolder must be a string",value:r.subfolder});let i=["includeConstraints","includeDocumentation","strictMode"];for(let n of i)r[n]!==void 0&&typeof r[n]!="boolean"&&t.push({path:`typescript.profileOptions.${n}`,message:`${n} must be a boolean`,value:r[n]});return t}validateTypeSchemaConfig(e){let t=[];if(typeof e!="object"||e===null)return t.push({path:"typeSchema",message:"typeSchema config must be an object",value:e}),t;let r=e,i=["enablePersistence","validateCached","forceRegenerate","shareCache"];for(let o of i)r[o]!==void 0&&typeof r[o]!="boolean"&&t.push({path:`typeSchema.${o}`,message:`${o} must be a boolean`,value:r[o]});let n=["cacheDir","cacheKeyPrefix"];for(let o of n)r[o]!==void 0&&typeof r[o]!="string"&&t.push({path:`typeSchema.${o}`,message:`${o} must be a string`,value:r[o]});if(r.maxAge!==void 0&&(typeof r.maxAge!="number"||r.maxAge<=0)&&t.push({path:"typeSchema.maxAge",message:"maxAge must be a positive number",value:r.maxAge}),r.profiles!==void 0)if(typeof r.profiles!="object"||r.profiles===null)t.push({path:"typeSchema.profiles",message:"profiles must be an object",value:r.profiles});else {let o=r.profiles;o.autoDetect!==void 0&&typeof o.autoDetect!="boolean"&&t.push({path:"typeSchema.profiles.autoDetect",message:"autoDetect must be a boolean",value:o.autoDetect});}return t}},Xe=class{validator=new Qe;async autoload(e=process.cwd()){let t=await this.findConfigFile(e);return t?this.loadFromFile(t):{...Ye}}async loadFromFile(e){try{let t;if(e.endsWith(".ts")||e.endsWith("")){let n=await import(resolve(e));t=n.default||n;}else {let i=await readFile(e,"utf-8");t=JSON.parse(i);}let r=this.validator.validate(t);if(!r.valid){let i=r.errors.map(n=>`${n.path}: ${n.message}`).join(`
+`);for(let r of t)this.line(this.opts.commentLinePrefix,r);}debugComment(...e){this.opts.withDebugComment&&(e=e.map(t=>typeof t=="string"?t:JSON.stringify(t,null,2)),this.comment(...e));}disclaimer(){return ["WARNING: This file is autogenerated by @atomic-ehr/codegen.","GitHub: https://github.com/orgs/atomic-ehr/repositories","Any manual changes made to this file may be overwritten."]}generateDisclaimer(){this.disclaimer().forEach(e=>this.comment(e)),this.line();}indentBlock(e){this.indent(),e(),this.deindent();}curlyBlock(e,t,r){this.line(`${e.filter(Boolean).join(" ")} {`),this.indent(),t(),this.deindent(),this.line(`}${r?.filter(Boolean).join(" ")??""}`);}squareBlock(e,t,r){this.line(`${e.filter(Boolean).join(" ")} [`),this.indent(),t(),this.deindent(),this.line(`]${r?.filter(Boolean).join(" ")??""}`);}};var Ot={boolean:"boolean",instant:"string",time:"string",date:"string",dateTime:"string",decimal:"number",integer:"number",unsignedInt:"number",positiveInt:"number",integer64:"number",base64Binary:"string",uri:"string",url:"string",canonical:"string",oid:"string",uuid:"string",string:"string",code:"string",markdown:"string",id:"string",xhtml:"string"},yr=s=>U(s),Dt=s=>s.kind==="profile"?`${v(s)}_profile`:_(s.name),br=s=>`${Dt(s)}.ts`,Ze=(s,e=true)=>{if(!s)return;let t=s.split("/").pop();if(t&&(e&&t.includes("#")&&(t=t.split("#")[0]),!!t))return /^\d/.test(t)&&(t=`number_${t}`),Se(t)},v=s=>{if(s.kind==="nested"){let e=s.url,t=Ze(e,false);if(!t)return "";let[r,i]=t.split("#"),n=Nt((i??"").split(".")).join("");return Se([r,n].join(""))}return Se(s.name)},B=s=>Se(s),Se=s=>(new Set(["abstract","any","as","async","await","boolean","bigint","break","case","catch","class","const","constructor","continue","debugger","declare","default","delete","do","else","enum","export","extends","extern","false","finally","for","function","from","get","goto","if","implements","import","in","infer","instanceof","interface","keyof","let","module","namespace","never","new","null","number","object","of","override","private","protected","public","readonly","return","satisfies","set","static","string","super","switch","this","throw","true","try","type","typeof","unknown","var","void","while"]).has(s)&&(s=`${s}_`),s.replace(/[- ]/g,"_")),ve=class extends be{tsImportType(e,...t){this.lineSM(`import type { ${t.join(", ")} } from "${e}"`);}generateFhirPackageIndexFile(e){this.cat("index.ts",()=>{let t=e.map(r=>({identifier:r.identifier,tsPackageName:Dt(r.identifier),resourceName:v(r.identifier)})).sort((r,i)=>r.resourceName.localeCompare(i.resourceName));t=Array.from(new Map(t.map(r=>[r.resourceName.toLowerCase(),r])).values()).sort((r,i)=>r.resourceName.localeCompare(i.resourceName));for(let r of t)this.debugComment(r.identifier),this.lineSM(`export type { ${r.resourceName} } from "./${r.tsPackageName}"`);});}generateDependenciesImports(e){if(e.dependencies){let t=[],r=[];for(let i of e.dependencies)["complex-type","resource","logical"].includes(i.kind)?t.push({tsPackage:`../${U(i.package)}/${_(i.name)}`,name:ye(i.name)}):Y(i)?t.push({tsPackage:`../${U(i.package)}/${_(Ze(i.url)??"")}`,name:v(i)}):r.push(i);t.sort((i,n)=>i.name.localeCompare(n.name));for(let i of t)this.tsImportType(i.tsPackage,i.name);for(let i of r)this.debugComment("skip:",i);this.line();}}generateComplexTypeReexports(e){let t=e.dependencies?.filter(r=>["complex-type"].includes(r.kind)).map(r=>({tsPackage:`../${U(r.package)}/${_(r.name)}`,name:ye(r.name)}));if(t&&t.length>0){for(let r of t)this.lineSM(`export type { ${r.name} } from "${r.tsPackage}"`);this.line();}}addFieldExtension(e,t){t.type.kind==="primitive-type"&&this.lineSM(`_${B(e)}?: Element`);}generateType(e,t){var r;t.identifier.name==="Reference"?r="Reference<T extends string = string>":(t.identifier.kind,r=v(t.identifier));let i=Ze(t.base?.url),n=i&&`extends ${i}`;this.debugComment(t.identifier),this.curlyBlock(["export","interface",r,n],()=>{if(!t.fields)return;if(t.identifier.kind==="resource"){let c=[t.identifier];c.push(...e.resourceChildren(t.identifier)),this.lineSM(`resourceType: ${c.map(a=>`"${a.name}"`).join(" | ")}`),this.line();}let o=Object.entries(t.fields).sort((c,a)=>c[0].localeCompare(a[0]));for(let[c,a]of o){if(!$(a))continue;this.debugComment(c,":",a);let l=B(c),p=a.required?"":"?",u=a.array?"[]":"";if(a.type===void 0)continue;let g=a.type.name;a.type.kind==="nested"&&(g=v(a.type)),a.type.kind==="primitive-type"&&(g=Ot[a.type.name]??"string"),t.identifier.name==="Reference"&&l==="reference"&&(g="`${T}/${string}`"),a.reference?.length&&(g=`Reference<${a.reference.map(d=>`"${d.name}"`).join(" | ")}>`),a.enum&&(g=a.enum.map(f=>`"${f}"`).join(" | ")),this.lineSM(`${l}${p}:`,`${g}${u}`),["resource","complex-type"].includes(t.identifier.kind)&&this.addFieldExtension(c,a);}});}generateNestedTypes(e,t){if(t.nested)for(let r of t.nested)this.generateType(e,r);}generateProfileType(e,t){let r=v(t.identifier);this.debugComment("identifier",t.identifier),this.debugComment("base",t.base),this.curlyBlock(["export","interface",r],()=>{if(this.lineSM(`__profileUrl: "${t.identifier.url}"`),this.line(),!!st(t))for(let[i,n]of Object.entries(t.fields??{})){if(!$(n))continue;this.debugComment(i,n);let o=B(i),c;if(n.type.kind==="nested")c=v(n.type);else if(n.enum)c=n.enum.map(a=>`'${a}'`).join(" | ");else if(n.reference&&n.reference.length>0){let a=e.findLastSpecialization(t.identifier),l=e.resolve(a);if(!L(l))throw new Error(`Invalid specialization for ${t.identifier}`);let p=l.fields?.[i];if(p===void 0||!$(p))throw new Error(`Invalid field declaration for ${i}`);let u=(p.reference??[]).map(f=>f.name),g=n.reference.map(f=>{let d=e.findLastSpecialization(f);return d.name!==f.name?`"${d.name}" /*${f.name}*/`:`'${f.name}'`}).join(" | ");u.length===1&&u[0]==="Resource"&&g!=='"Resource"'?c=`Reference<"Resource" /* ${g} */ >`:c=`Reference<${g}>`;}else c=Ot[n.type.name]??n.type.name;this.lineSM(`${o}${n.required?"":"?"}: ${c}${n.array?"[]":""}`);}}),this.line();}generateAttachProfile(e){let t=v(e.base),r=v(e.identifier),i=Object.entries(e.fields||{}).filter(([n,o])=>o&&$(o)&&o.type!==void 0).map(([n])=>B(n));this.curlyBlock([`export const attach_${r}_to_${t} =`,`(resource: ${t}, profile: ${r}): ${t}`,"=>"],()=>{this.curlyBlock(["return"],()=>{this.line("...resource,"),this.curlyBlock(["meta:"],()=>{this.line(`profile: ['${e.identifier.url}']`);},[","]),i.forEach(n=>{this.line(`${n}:`,`profile.${n},`);});});}),this.line();}generateExtractProfile(e,t){let r=v(t.base),i=v(t.identifier),n=Object.entries(t.fields||{}).filter(([a,l])=>$(l)&&l.type!==void 0).map(([a])=>a),o=e.resolve(e.findLastSpecialization(t.identifier));if(!L(o))throw new Error(`Specialization not found for ${t.identifier.url}`);let c={};this.curlyBlock([`export const extract_${i}_from_${r} =`,`(resource: ${r}): ${i}`,"=>"],()=>{n.forEach(a=>{let l=B(a),p=t.fields?.[a],u=o.fields?.[a];if(!$(p)||!$(u))return;p.required&&!u.required&&this.curlyBlock([`if (resource.${l} === undefined)`],()=>this.lineSM(`throw new Error("'${l}' is required for ${t.identifier.url}")`));let g=p?.reference?.map(d=>d.name),f=u?.reference?.map(d=>d.name);if(g&&f&&g.length!==f.length){let d=`reference_is_valid_${l}`;this.curlyBlock(["const",d,"=","(ref?: Reference)","=>"],()=>{this.line("return !ref"),this.indentBlock(()=>{f.forEach(x=>{this.line(`|| ref.reference?.startsWith('${x}/')`);}),this.line(";");});});let h=p?.required?"":`!resource.${l} || `;p.array?h+=`resource.${l}.every( (ref) => ${d}(ref) )`:h+=`!${d}(resource.${l})`,this.curlyBlock(["if (",h,")"],()=>{this.lineSM(`throw new Error("'${a}' has different references in profile and specialization")`);}),this.line(),c[a]=true;}}),this.curlyBlock(["return"],()=>{this.line(`__profileUrl: '${t.identifier.url}',`),n.forEach(a=>{let l=B(a);c[a]?this.line(`${l}:`,`resource.${l} as ${i}['${l}'],`):this.line(`${l}:`,`resource.${l},`);});});});}generateResourceModule(e,t){this.cat(`${br(t.identifier)}`,()=>{if(this.generateDisclaimer(),["complex-type","resource","logical"].includes(t.identifier.kind))this.generateDependenciesImports(t),this.generateComplexTypeReexports(t),this.generateNestedTypes(e,t),this.generateType(e,t);else if(Q(t)){let r=e.flatProfile(t);this.generateDependenciesImports(r),this.generateProfileType(e,r),this.generateAttachProfile(r),this.generateExtractProfile(e,r);}else throw new Error(`Profile generation not implemented for kind: ${t.identifier.kind}`)});}generate(e){let t=[...e.collectComplexTypes(),...e.collectResources(),...e.collectProfiles().filter(i=>e.isWithMetaField(i))],r=xt(t);this.cd("/",()=>{for(let[i,n]of Object.entries(r)){let o=yr(i);this.cd(o,()=>{for(let c of n)this.generateResourceModule(e,c);this.generateFhirPackageIndexFile(n);});}});}};var xr=s=>{let e=()=>s.writtenFiles().map(t=>({path:q.normalize(q.join(s.opts.outputDir,t)),filename:t.replace(/^.*[\\/]/,""),content:"",exports:[],size:0,timestamp:new Date}));return {generate:async t=>{let r=Tt(t);return s.generate(r),e()},setOutputDir:t=>s.opts.outputDir=t,build:async t=>e()}},z=class{schemas=[];options;generators=new Map;cache;pendingOperations=[];typeSchemaGenerator;logger;packages=[];progressCallback;typeSchemaConfig;constructor(e={}){this.options={outputDir:e.outputDir||"./generated",verbose:e.verbose??false,overwrite:e.overwrite??true,cache:e.cache??true,cleanOutput:e.cleanOutput??true,typeSchemaConfig:e.typeSchemaConfig,manager:e.manager||null,throwException:e.throwException||false},this.typeSchemaConfig=e.typeSchemaConfig,this.logger=e.logger||w({verbose:this.options.verbose,prefix:"API"}),this.options.cache&&(this.cache=new R(this.typeSchemaConfig));}fromPackage(e,t){return this.packages.push(it({name:e,version:t||"latest"})),this}fromFiles(...e){this.logger.debug(`Loading from ${e.length} TypeSchema files`);let t=this.loadFromFiles(e);return this.pendingOperations.push(t),this}fromSchemas(e){return this.logger.debug(`Adding ${e.length} TypeSchemas to generation`),this.schemas=[...this.schemas,...e],this}typescript(e={}){let t=`${this.options.outputDir}/types`,r=new H({outputDir:t,moduleFormat:e.moduleFormat||"esm",generateIndex:e.generateIndex??true,includeDocuments:e.includeDocuments??true,namingConvention:e.namingConvention||"PascalCase",includeExtensions:e.includeExtensions??false,includeProfiles:e.includeProfiles??false,generateValueSets:e.generateValueSets??false,includeValueSetHelpers:e.includeValueSetHelpers??false,valueSetStrengths:e.valueSetStrengths??["required"],logger:this.logger.child("TS"),valueSetMode:e.valueSetMode??"required-only",valueSetDirectory:e.valueSetDirectory??"valuesets",verbose:this.options.verbose,validate:true,overwrite:this.options.overwrite});return this.generators.set("typescript",r),this.logger.debug(`Configured TypeScript generator (${e.moduleFormat||"esm"})`),this}typescript2(e){let t={outputDir:q.join(this.options.outputDir,"/types"),tabSize:4,withDebugComment:false,commentLinePrefix:"//"},r={logger:this.logger,...t,...e},i=xr(new ve(r));return this.generators.set("typescript2",i),this.logger.debug(`Configured TypeScript2 generator (${JSON.stringify(r,void 0,2)})`),this}onProgress(e){return this.progressCallback=e,this}outputTo(e){this.logger.debug(`Setting output directory: ${e}`),this.options.outputDir=e;for(let t of this.generators.values())t.setOutputDir&&t.setOutputDir(e);return this}verbose(e=true){return this.options.verbose=e,this.logger?.configure({verbose:e}),this}throwException(e=true){return this.options.throwException=e,this}cleanOutput(e=true){return this.options.cleanOutput=e,this}async generate(){let e=performance.now(),t={success:false,outputDir:this.options.outputDir,filesGenerated:[],errors:[],warnings:[],duration:0};if(this.logger.debug(`Starting generation with ${this.generators.size} generators`),this.options.cleanOutput){this.logger.info(`Cleaning output directory: ${this.options.outputDir}`);try{F.rmSync(this.options.outputDir,{recursive:!0,force:!0}),F.mkdirSync(this.options.outputDir,{recursive:!0});}catch(r){this.logger.warn(`Error cleaning output directory: ${r instanceof Error?r.message:String(r)}`);}}try{this.logger.info("Initialize Canonical Manager");let r=CanonicalManager({packages:this.packages,workingDir:"tmp/fhir"});await r.init();let i=await j(r,this.logger),n=await vt(i,this.logger);this.logger.debug(`Executing ${this.generators.size} generators`),await this.executeGenerators(t,n),this.logger.info("Generation completed successfully"),t.success=t.errors.length===0,this.logger.debug(`Generation completed: ${t.filesGenerated.length} files`);}catch(r){this.logger.error("Code generation failed",r instanceof Error?r:new Error(String(r))),t.errors.push(r instanceof Error?r.message:String(r));}return {...t,success:t.errors.length===0,duration:performance.now()-e}}async build(){let e={};for(let[t,r]of this.generators.entries())r.build&&(e[t]=await r.build(this.schemas));return e}reset(){return this.schemas=[],this.generators.clear(),this.progressCallback=void 0,this}getSchemas(){return [...this.schemas]}getGenerators(){return Array.from(this.generators.keys())}async loadFromFiles(e){this.typeSchemaGenerator||(this.typeSchemaGenerator=new I({verbose:this.options.verbose,logger:this.logger.child("Schema"),treeshake:this.typeSchemaConfig?.treeshake},this.typeSchemaConfig));let r=await new D({format:"auto"}).parseFromFiles(e);this.schemas=[...this.schemas,...r],this.cache&&this.cache.setMany(r);}async executeGenerators(e,t){for(let[r,i]of this.generators.entries()){this.logger.info(`Generating ${r}...`);try{let n=await i.generate(t);e.filesGenerated.push(...n.map(o=>o.path||o.filename)),this.logger.info(`Generating ${r} finished successfully`);}catch(n){e.errors.push(`${r} generator failed: ${n instanceof Error?n.message:String(n)}`);}}}};var Ye={outputDir:"./generated",verbose:false,overwrite:true,validate:true,cache:true,cleanOutput:true,typescript:{moduleFormat:"esm",generateIndex:true,includeDocuments:false,namingConvention:"PascalCase",strictMode:true,includeProfiles:true,includeExtensions:false,includeCodeSystems:false,includeOperations:false,generateValueSets:false,valueSetDirectory:"valuesets",valueSetMode:"required-only",valueSetStrengths:["required"],includeValueSetHelpers:false,fhirVersion:"R4",resourceTypes:[],maxDepth:10,profileOptions:{generateKind:"interface",includeConstraints:true,includeDocumentation:true,strictMode:false,subfolder:"profiles"},generateBuilders:false,builderOptions:{includeValidation:true,includeFactoryMethods:true,includeInterfaces:true,generateNestedBuilders:true,includeHelperMethods:true,supportPartialBuild:true,includeJSDoc:true,generateFactories:true,includeTypeGuards:true,handleChoiceTypes:true,generateArrayHelpers:true},validatorOptions:{includeCardinality:true,includeTypes:true,includeConstraints:true,includeInvariants:false,validateRequired:true,allowAdditional:false,strictValidation:false,collectMetrics:false,generateAssertions:true,generatePartialValidators:true,optimizePerformance:true,includeJSDoc:true,generateCompositeValidators:true},guardOptions:{includeRuntimeValidation:true,includeErrorMessages:true,treeShakeable:true,targetTSVersion:"5.0",strictGuards:false,includeNullChecks:true,verbose:false}},typeSchema:{enablePersistence:true,cacheDir:".typeschema-cache",maxAge:1440*60*1e3,validateCached:true,forceRegenerate:false,shareCache:true,cacheKeyPrefix:"",treeshake:[],singleFile:false,profiles:{autoDetect:true}},packages:[],files:[],$schema:""},Te=["atomic-codegen.config.ts","atomic-codegen.config","atomic-codegen.config.json",".atomic-codegenrc","atomic-codegen.json",".atomic-codegen.json","codegen.config.json","codegen.json"],Qe=class{validate(e){let t={valid:true,errors:[],warnings:[]};if(!e||typeof e!="object")return t.valid=false,t.errors.push({path:"root",message:"Configuration must be an object",value:e}),t;let r=e;r.outputDir!==void 0&&typeof r.outputDir!="string"&&t.errors.push({path:"outputDir",message:"outputDir must be a string",value:r.outputDir});let i=["verbose","overwrite","validate","cache"];for(let n of i)r[n]!==void 0&&typeof r[n]!="boolean"&&t.errors.push({path:n,message:`${n} must be a boolean`,value:r[n]});if(r.typescript!==void 0){let n=this.validateTypeScriptConfig(r.typescript);t.errors.push(...n);}if(r.typeSchema!==void 0){let n=this.validateTypeSchemaConfig(r.typeSchema);t.errors.push(...n);}return r.packages!==void 0&&(Array.isArray(r.packages)?r.packages.forEach((n,o)=>{typeof n!="string"&&t.errors.push({path:`packages[${o}]`,message:"package name must be a string",value:n});}):t.errors.push({path:"packages",message:"packages must be an array",value:r.packages})),r.files!==void 0&&(Array.isArray(r.files)?r.files.forEach((n,o)=>{typeof n!="string"&&t.errors.push({path:`files[${o}]`,message:"file path must be a string",value:n});}):t.errors.push({path:"files",message:"files must be an array",value:r.files})),t.valid=t.errors.length===0,t.valid&&(t.config=r),t}validateTypeScriptConfig(e){let t=[];if(typeof e!="object"||e===null)return t.push({path:"typescript",message:"typescript config must be an object",value:e}),t;let r=e;r.moduleFormat!==void 0&&(["esm","cjs"].includes(r.moduleFormat)||t.push({path:"typescript.moduleFormat",message:'moduleFormat must be "esm" or "cjs"',value:r.moduleFormat})),r.namingConvention!==void 0&&(["PascalCase","camelCase"].includes(r.namingConvention)||t.push({path:"typescript.namingConvention",message:'namingConvention must be "PascalCase" or "camelCase"',value:r.namingConvention}));let i=["generateIndex","includeDocuments","strictMode","includeProfiles","includeExtensions","includeCodeSystems","includeOperations","generateValueSets","includeValueSetHelpers"];for(let n of i)r[n]!==void 0&&typeof r[n]!="boolean"&&t.push({path:`typescript.${n}`,message:`${n} must be a boolean`,value:r[n]});if(r.validatorOptions!==void 0){let n=this.validateValidatorOptions(r.validatorOptions);t.push(...n);}if(r.guardOptions!==void 0){let n=this.validateGuardOptions(r.guardOptions);t.push(...n);}if(r.profileOptions!==void 0){let n=this.validateProfileOptions(r.profileOptions);t.push(...n);}return t}validateValidatorOptions(e){let t=[];if(typeof e!="object"||e===null)return t.push({path:"typescript.validatorOptions",message:"validatorOptions must be an object",value:e}),t;let r=e,i=["includeCardinality","includeTypes","includeConstraints","includeInvariants","validateRequired","allowAdditional","strictValidation","collectMetrics","generateAssertions","generatePartialValidators","optimizePerformance","includeJSDoc","generateCompositeValidators"];for(let n of i)r[n]!==void 0&&typeof r[n]!="boolean"&&t.push({path:`typescript.validatorOptions.${n}`,message:`${n} must be a boolean`,value:r[n]});return t}validateGuardOptions(e){let t=[];if(typeof e!="object"||e===null)return t.push({path:"typescript.guardOptions",message:"guardOptions must be an object",value:e}),t;let r=e;r.targetTSVersion!==void 0&&(["3.8","4.0","4.5","5.0"].includes(r.targetTSVersion)||t.push({path:"typescript.guardOptions.targetTSVersion",message:'targetTSVersion must be one of: "3.8", "4.0", "4.5", "5.0"',value:r.targetTSVersion}));let i=["includeRuntimeValidation","includeErrorMessages","treeShakeable","strictGuards","includeNullChecks","verbose"];for(let n of i)r[n]!==void 0&&typeof r[n]!="boolean"&&t.push({path:`typescript.guardOptions.${n}`,message:`${n} must be a boolean`,value:r[n]});return t}validateProfileOptions(e){let t=[];if(typeof e!="object"||e===null)return t.push({path:"typescript.profileOptions",message:"profileOptions must be an object",value:e}),t;let r=e;r.generateKind!==void 0&&(["interface","type","both"].includes(r.generateKind)||t.push({path:"typescript.profileOptions.generateKind",message:'generateKind must be "interface", "type", or "both"',value:r.generateKind})),r.subfolder!==void 0&&typeof r.subfolder!="string"&&t.push({path:"typescript.profileOptions.subfolder",message:"subfolder must be a string",value:r.subfolder});let i=["includeConstraints","includeDocumentation","strictMode"];for(let n of i)r[n]!==void 0&&typeof r[n]!="boolean"&&t.push({path:`typescript.profileOptions.${n}`,message:`${n} must be a boolean`,value:r[n]});return t}validateTypeSchemaConfig(e){let t=[];if(typeof e!="object"||e===null)return t.push({path:"typeSchema",message:"typeSchema config must be an object",value:e}),t;let r=e,i=["enablePersistence","validateCached","forceRegenerate","shareCache"];for(let o of i)r[o]!==void 0&&typeof r[o]!="boolean"&&t.push({path:`typeSchema.${o}`,message:`${o} must be a boolean`,value:r[o]});let n=["cacheDir","cacheKeyPrefix"];for(let o of n)r[o]!==void 0&&typeof r[o]!="string"&&t.push({path:`typeSchema.${o}`,message:`${o} must be a string`,value:r[o]});if(r.maxAge!==void 0&&(typeof r.maxAge!="number"||r.maxAge<=0)&&t.push({path:"typeSchema.maxAge",message:"maxAge must be a positive number",value:r.maxAge}),r.profiles!==void 0)if(typeof r.profiles!="object"||r.profiles===null)t.push({path:"typeSchema.profiles",message:"profiles must be an object",value:r.profiles});else {let o=r.profiles;o.autoDetect!==void 0&&typeof o.autoDetect!="boolean"&&t.push({path:"typeSchema.profiles.autoDetect",message:"autoDetect must be a boolean",value:o.autoDetect});}return t}},Xe=class{validator=new Qe;async autoload(e=process.cwd()){let t=await this.findConfigFile(e);return t?this.loadFromFile(t):{...Ye}}async loadFromFile(e){try{let t;if(e.endsWith(".ts")||e.endsWith("")){let n=await import(resolve(e));t=n.default||n;}else {let i=await readFile(e,"utf-8");t=JSON.parse(i);}let r=this.validator.validate(t);if(!r.valid){let i=r.errors.map(n=>`${n.path}: ${n.message}`).join(`
 `);throw new Error(`Configuration validation failed:
 ${i}`)}return this.mergeWithDefaults(r.config)}catch(t){throw t instanceof Error?new Error(`Failed to load config from ${e}: ${t.message}`):t}}async findConfigFile(e){for(let t of Te){let r=resolve(e,t);if(existsSync(r))return r}return null}mergeWithDefaults(e){return {...Ye,...e,typescript:{...Ye.typescript,...e.typescript}}}},Cr=new Xe;async function we(s){return Cr.autoload(s)}var Lt={command:"generate",describe:"Generate code based on configuration file settings",builder:s=>s.option("verbose",{alias:"v",type:"boolean",default:false,description:"Enable verbose output"}).example("$0 generate","Generate code using settings from config file").example("$0 generate --verbose","Generate with verbose output"),handler:async s=>{if(s._.length>1){let o=s._.slice(1).join(" ");b(`Invalid syntax: 'atomic-codegen generate ${o}'
 
@@ -61,7 +61,7 @@ export default defineConfig({
   typescript: {
     generateIndex: true
   }
-});`),process.exit(1);}let r=await we(e),i=s.verbose??r.verbose??false,n=w({verbose:i,prefix:"Generate"});try{Re("Starting generation from config"),i&&(n.info(`Config file: ${t}`),n.info(`Output directory: ${r.outputDir||"./generated"}`),n.info(`Packages: ${r.packages?.length||0}`),n.info(`Files: ${r.files?.length||0}`),n.info(`TypeScript generation: ${r.typescript?"enabled":"disabled"}`));let o=new _({outputDir:r.outputDir||"./generated",verbose:i,overwrite:r.overwrite??!0,cache:r.cache??!0,typeSchemaConfig:r.typeSchema,logger:n});if(r.packages&&r.packages.length>0){n.info(`Loading packages from config: ${r.packages.join(", ")}`);for(let a of r.packages){let[l,p]=a.includes("@")?a.split("@"):[a,void 0];o.fromPackage(l,p);}}else if(r.files&&r.files.length>0){n.info(`Loading files from config: ${r.files.join(", ")}`);for(let a of r.files)o.fromFiles(a);}else throw new Error("No data source specified in config. Please configure 'packages' or 'files' in your config file.");if(r.typescript&&(i&&(n.info("Configuring TypeScript generation from config"),n.debug(`Module format: ${r.typescript.moduleFormat||"esm"}`),n.debug(`Generate index: ${r.typescript.generateIndex??!0}`),n.debug(`Include docs: ${r.typescript.includeDocuments??!1}`),n.debug(`Naming convention: ${r.typescript.namingConvention||"PascalCase"}`)),o.typescript(r.typescript)),!r.typescript)throw new Error("No generators configured. Please enable 'typescript' in your config file.");i&&o.onProgress((a,l,p,u)=>{let g=Math.round(l/p*100);n.progress(`[${a}] ${g}% - ${u||"Processing..."}`);}),n.step("Executing generation...");let c=await o.generate();if(c.success){if(K(`Generated ${c.filesGenerated.length} files in ${c.duration.toFixed(2)}ms`),n.dim(`Output directory: ${c.outputDir}`),c.warnings.length>0)for(let a of c.warnings)$e(a);}else {b(`Generation failed with ${c.errors.length} errors`);for(let a of c.errors)n.dim(`  ${a}`);process.exit(1);}}catch(o){b("Generation failed with unexpected error",o instanceof Error?o:new Error(String(o))),process.exit(1);}}};async function $r(s){for(let e of Te){let t=resolve(s,e);if(existsSync(t))return t}return null}var jt={command:"generate <packages..>",describe:"Generate TypeSchema files from FHIR packages",builder:{packages:{type:"string",array:true,demandOption:true,describe:"FHIR packages to process (e.g., hl7.fhir.r4.core@4.0.1)"},output:{alias:"o",type:"string",describe:"Output file or directory",default:"./schemas.ndjson"},format:{alias:"f",type:"string",choices:["ndjson","json"],default:"ndjson",describe:"Output format for TypeSchema files"},treeshake:{alias:"t",type:"string",array:true,describe:"Only generate TypeSchemas for specific ResourceTypes (treeshaking)"},singleFile:{alias:"s",type:"boolean",default:false,describe:"Generate single TypeSchema file instead of multiple files (NDJSON format)"},verbose:{alias:"v",type:"boolean",default:false,describe:"Enable verbose output"}},handler:async s=>{let e=w({verbose:s.verbose,prefix:"TypeSchema"});try{let t=await we(process.cwd());e.step("Generating TypeSchema from FHIR packages"),e.info(`Packages: ${s.packages.join(", ")}`),e.info(`Output: ${s.output}`);let r=s.singleFile!==void 0?s.singleFile:t.typeSchema?.singleFile??!1,i=r?"ndjson":s.format;e.debug(`Format: ${i}${r&&s.format==="json"?" (forced from json due to singleFile)":""}`);let n=s.treeshake&&s.treeshake.length>0?s.treeshake:t.typeSchema?.treeshake;n&&n.length>0&&e.info(`Treeshaking enabled for ResourceTypes: ${n.join(", ")}`),r&&e.info("Single file output enabled (NDJSON format)");let o=Date.now(),c=new I({verbose:s.verbose,treeshake:n}),a=[];for(let g of s.packages){let[f,d]=g.includes("@")?g.split("@"):[g,void 0];e.progress(`Processing package: ${f}${d?`@${d}`:""}`);let h=await c.generateFromPackage(f,d,e);a.push(...h);}if(a.length===0)throw new Error("No schemas were generated from the specified packages");let l=s.output;await mkdir(dirname(l),{recursive:!0});let p;i==="json"?p=JSON.stringify(a,null,2):p=a.map(g=>JSON.stringify(g)).join(`
+});`),process.exit(1);}let r=await we(e),i=s.verbose??r.verbose??false,n=w({verbose:i,prefix:"Generate"});try{Re("Starting generation from config"),i&&(n.info(`Config file: ${t}`),n.info(`Output directory: ${r.outputDir||"./generated"}`),n.info(`Packages: ${r.packages?.length||0}`),n.info(`Files: ${r.files?.length||0}`),n.info(`TypeScript generation: ${r.typescript?"enabled":"disabled"}`));let o=new z({outputDir:r.outputDir||"./generated",verbose:i,overwrite:r.overwrite??!0,cache:r.cache??!0,typeSchemaConfig:r.typeSchema,logger:n});if(r.packages&&r.packages.length>0){n.info(`Loading packages from config: ${r.packages.join(", ")}`);for(let a of r.packages){let[l,p]=a.includes("@")?a.split("@"):[a,void 0];o.fromPackage(l,p);}}else if(r.files&&r.files.length>0){n.info(`Loading files from config: ${r.files.join(", ")}`);for(let a of r.files)o.fromFiles(a);}else throw new Error("No data source specified in config. Please configure 'packages' or 'files' in your config file.");if(r.typescript&&(i&&(n.info("Configuring TypeScript generation from config"),n.debug(`Module format: ${r.typescript.moduleFormat||"esm"}`),n.debug(`Generate index: ${r.typescript.generateIndex??!0}`),n.debug(`Include docs: ${r.typescript.includeDocuments??!1}`),n.debug(`Naming convention: ${r.typescript.namingConvention||"PascalCase"}`)),o.typescript(r.typescript)),!r.typescript)throw new Error("No generators configured. Please enable 'typescript' in your config file.");i&&o.onProgress((a,l,p,u)=>{let g=Math.round(l/p*100);n.progress(`[${a}] ${g}% - ${u||"Processing..."}`);}),n.step("Executing generation...");let c=await o.generate();if(c.success){if(K(`Generated ${c.filesGenerated.length} files in ${c.duration.toFixed(2)}ms`),n.dim(`Output directory: ${c.outputDir}`),c.warnings.length>0)for(let a of c.warnings)$e(a);}else {b(`Generation failed with ${c.errors.length} errors`);for(let a of c.errors)n.dim(`  ${a}`);process.exit(1);}}catch(o){b("Generation failed with unexpected error",o instanceof Error?o:new Error(String(o))),process.exit(1);}}};async function $r(s){for(let e of Te){let t=resolve(s,e);if(existsSync(t))return t}return null}var jt={command:"generate <packages..>",describe:"Generate TypeSchema files from FHIR packages",builder:{packages:{type:"string",array:true,demandOption:true,describe:"FHIR packages to process (e.g., hl7.fhir.r4.core@4.0.1)"},output:{alias:"o",type:"string",describe:"Output file or directory",default:"./schemas.ndjson"},format:{alias:"f",type:"string",choices:["ndjson","json"],default:"ndjson",describe:"Output format for TypeSchema files"},treeshake:{alias:"t",type:"string",array:true,describe:"Only generate TypeSchemas for specific ResourceTypes (treeshaking)"},singleFile:{alias:"s",type:"boolean",default:false,describe:"Generate single TypeSchema file instead of multiple files (NDJSON format)"},verbose:{alias:"v",type:"boolean",default:false,describe:"Enable verbose output"}},handler:async s=>{let e=w({verbose:s.verbose,prefix:"TypeSchema"});try{let t=await we(process.cwd());e.step("Generating TypeSchema from FHIR packages"),e.info(`Packages: ${s.packages.join(", ")}`),e.info(`Output: ${s.output}`);let r=s.singleFile!==void 0?s.singleFile:t.typeSchema?.singleFile??!1,i=r?"ndjson":s.format;e.debug(`Format: ${i}${r&&s.format==="json"?" (forced from json due to singleFile)":""}`);let n=s.treeshake&&s.treeshake.length>0?s.treeshake:t.typeSchema?.treeshake;n&&n.length>0&&e.info(`Treeshaking enabled for ResourceTypes: ${n.join(", ")}`),r&&e.info("Single file output enabled (NDJSON format)");let o=Date.now(),c=new I({verbose:s.verbose,treeshake:n}),a=[];for(let g of s.packages){let[f,d]=g.includes("@")?g.split("@"):[g,void 0];e.progress(`Processing package: ${f}${d?`@${d}`:""}`);let h=await c.generateFromPackage(f,d,e);a.push(...h);}if(a.length===0)throw new Error("No schemas were generated from the specified packages");let l=s.output;await mkdir(dirname(l),{recursive:!0});let p;i==="json"?p=JSON.stringify(a,null,2):p=a.map(g=>JSON.stringify(g)).join(`
 `),await writeFile(l,p,"utf-8");let u=Date.now()-o;if(Pe(`Generated ${a.length} TypeSchema definitions`,u,{schemas:a.length}),e.dim(`Output: ${l}`),s.verbose){e.debug("Generated schemas:");let g=a.map(f=>`${f.identifier?.name||"Unknown"} (${f.identifier?.kind||"unknown"})`);M(g);}}catch(t){e.error("Failed to generate TypeSchema",t instanceof Error?t:new Error(String(t))),process.exit(1);}}};var Vt={command:"typeschema [subcommand]",describe:"TypeSchema operations - generate, validate and merge schemas",builder:s=>s.command(jt).help().example("$0 typeschema generate hl7.fhir.r4.core@4.0.1","Generate TypeSchema from FHIR R4 core package"),handler:s=>{if(!s.subcommand&&s._.length===1){Z("Available typeschema subcommands:"),M(["generate    Generate TypeSchema files from FHIR packages"]),console.log(`
 Use 'atomic-codegen typeschema <subcommand> --help' for more information about a subcommand.`),console.log(`
 Examples:`),M(["atomic-codegen typeschema generate hl7.fhir.r4.core@4.0.1 -o schemas.ndjson","atomic-codegen typeschema validate schemas.ndjson","atomic-codegen typeschema merge schema1.ndjson schema2.ndjson -o merged.ndjson"]);return}s.subcommand&&!["generate","validate","merge"].includes(s.subcommand)&&(b(`Unknown typeschema subcommand: ${s.subcommand}

package/dist/index.js

@@ -5490,7 +5490,7 @@ var TypeScript = class extends Writer {
     }).map(([fieldName]) => tsFieldName(fieldName));
     this.curlyBlock(
       [
-        `export const attach_${tsProfileName} =`,
+        `export const attach_${tsProfileName}_to_${tsBaseResourceName} =`,
         `(resource: ${tsBaseResourceName}, profile: ${tsProfileName}): ${tsBaseResourceName}`,
         "=>"
       ],
@@ -5520,7 +5520,7 @@ var TypeScript = class extends Writer {
     const shouldCast = {};
     this.curlyBlock(
       [
-        `export const extract_${tsBaseResourceName} =`,
+        `export const extract_${tsProfileName}_from_${tsBaseResourceName} =`,
         `(resource: ${tsBaseResourceName}): ${tsProfileName}`,
         "=>"
       ],
@@ -5541,7 +5541,7 @@ var TypeScript = class extends Writer {
           const pRefs = pField?.reference?.map((ref) => ref.name);
           const rRefs = rField?.reference?.map((ref) => ref.name);
           if (pRefs && rRefs && pRefs.length !== rRefs.length) {
-            const predName = `reference_pred_${tsField}`;
+            const predName = `reference_is_valid_${tsField}`;
             this.curlyBlock(["const", predName, "=", "(ref?: Reference)", "=>"], () => {
               this.line("return !ref");
               this.indentBlock(() => {
@@ -5555,7 +5555,7 @@ var TypeScript = class extends Writer {
             if (pField.array) {
               cond += `resource.${tsField}.every( (ref) => ${predName}(ref) )`;
             } else {
-              cond += `${predName}(resource.${tsField})`;
+              cond += `!${predName}(resource.${tsField})`;
             }
             this.curlyBlock(["if (", cond, ")"], () => {
               this.lineSM(