@atomic-ehr/codegen 0.0.1-canary.20251007123452.75482df → 0.0.1-canary.20251007144346.822c49c

package/dist/cli/index.js

@@ -50,7 +50,7 @@ ${i}`:r}filterAndSortSchemas(e){return this.collectedValueSets=this.collectValue
 `);await this.fileManager.writeFile("index.ts",t),this.logger.info(`Generated index.ts with type exports${this.tsOptions.generateValueSets&&this.collectedValueSets.size>0?" and value sets":""}`);}};var Ct=s=>s.split(/(?<=[a-z])(?=[A-Z])|[-_.\s]/).filter(Boolean),le=s=>Ct(s).map(e=>e.toLowerCase()).join("-"),mr=s=>{if(s.length===0)throw new Error("Empty string");return s[0]?.toUpperCase()+s.substring(1).toLowerCase()};var pe=s=>Ct(s).map(mr).join("");var Ue=s=>!s||s.length===0?s:s.charAt(0).toUpperCase()+s.slice(1),Tt=s=>s.map(e=>Ue(e));var ze=class{opts;currentDir;currentFileDescriptor;writtenFilesSet=new Set;constructor(e){this.opts=e,this.currentDir=e.outputDir;}logger(){return this.opts.logger}cd(e,t){this.currentDir=e.startsWith("/")?A.join(this.opts.outputDir,e):A.join(this.currentDir,e),x.existsSync(this.currentDir)||x.mkdirSync(this.currentDir,{recursive:true}),this.logger()?.debug(`cd '${this.currentDir}'`),t();}cat(e,t){if(this.currentFileDescriptor)throw new Error("Can't open file in file");if(e.includes("/"))throw new Error(`Change file path separatly: ${e}`);let r=`${this.currentDir}/${e}`;try{this.currentFileDescriptor=x.openSync(r,"w"),this.writtenFilesSet.add(e),this.logger()?.debug(`cat > '${r}'`),t();}finally{this.currentFileDescriptor&&x.closeSync(this.currentFileDescriptor),this.currentFileDescriptor=void 0;}}write(e){if(!this.currentFileDescriptor)throw new Error("No file opened");x.writeSync(this.currentFileDescriptor,e);}generate(e){throw new Error("Not implemented")}writtenFiles(){return Array.from(this.writtenFilesSet)}},ue=class extends ze{currentIndent=0;indent(){this.currentIndent+=this.opts.tabSize;}deindent(){this.currentIndent-=this.opts.tabSize;}writeIndent(){this.write(" ".repeat(this.currentIndent));}line(...e){this.writeIndent(),this.write(`${e.join(" ")}
 `);}lineSM(...e){this.writeIndent(),this.write(`${e.join(" ")};
 `);}comment(...e){let t=e.join(" ").split(`
-`);for(let r of t)this.line(this.opts.commentLinePrefix,r);}debugComment(...e){this.opts.withDebugComment&&(e=e.map(t=>typeof t=="string"?t:JSON.stringify(t,null,2)),this.comment(...e));}disclaimer(){return ["WARNING: This file is autogenerated by FHIR Schema Codegen.","https://github.com/fhir-schema/fhir-schema-codegen","Any manual changes made to this file may be overwritten."]}generateDisclaimer(){this.disclaimer().forEach(e=>this.comment(e)),this.line();}curlyBlock(e,t,r){this.line(`${e.filter(Boolean).join(" ")} {`),this.indent(),t(),this.deindent(),this.line(`}${r?.filter(Boolean).join(" ")??""}`);}squareBlock(e,t,r){this.line(`${e.filter(Boolean).join(" ")} [`),this.indent(),t(),this.deindent(),this.line(`]${r?.filter(Boolean).join(" ")??""}`);}};var kt=s=>{let e={};for(let t of s){let r=t.identifier.package;e[r]||(e[r]=[]),e[r].push(t);}for(let[t,r]of Object.entries(e))r.sort((i,n)=>i.identifier.name.localeCompare(n.identifier.name));return e},Ft=s=>s.filter(e=>e.identifier.kind==="complex-type"),qe=s=>s.filter(e=>e.identifier.kind==="resource");var $t=s=>{if(!s.choices)return s.choiceOf,s},Rt=s=>{let e=qe(s),t=[];for(let n of e)n.base&&t.push({parent:n.base,child:n.identifier});let r=[...t],i=n=>{let o=t.filter(c=>c.parent.name===n.name).map(c=>c.child),a=[];for(let c of o)a.push(...i(c));return [...o,...a]};for(let n of t){let o=i(n.child);for(let a of o)t.some(c=>c.parent.name===n.parent.name&&c.child.name===a.name)||r.push({parent:n.parent,child:a});}return r},It=(s,e)=>s.filter(t=>t.parent.name===e.name).map(t=>t.child);var hr={boolean:"boolean",instant:"string",time:"string",date:"string",dateTime:"string",decimal:"number",integer:"number",unsignedInt:"number",positiveInt:"number",integer64:"number",base64Binary:"string",uri:"string",url:"string",canonical:"string",oid:"string",uuid:"string",string:"string",code:"string",markdown:"string",id:"string",xhtml:"string"},Je=(s,e=true)=>{if(!s)return;let t=s.split("/").pop();return e&&t?.includes("#")&&(t=t.split("#")[0]),/^\d/.test(t??"")&&(t=`number_${t}`),t?.replace(/[- ]/g,"_")},Et=s=>pe(s.name),yr=s=>`${Et(s)}.ts`,j=s=>s==="extends"?"extends_":s.replace(/[- ]/g,"_"),br=s=>j(s.name),We=s=>{let e=Je(s,false);if(!e)return "";let[t,r]=e.split("#"),i=Tt((r??"").split(".")).join("");return [t,i].join("")},ge=class extends ue{resourceRelatives=[];tsImport(e,...t){this.lineSM(`import { ${t.join(", ")} } from '${e}'`);}generateFhirPackageIndexFile(e){this.cat("index.ts",()=>{let t=e.map(r=>({identifier:r.identifier,tsPackageName:Et(r.identifier),resourceName:br(r.identifier)})).sort((r,i)=>r.resourceName.localeCompare(i.resourceName));t=Array.from(new Map(t.map(r=>[r.resourceName.toLowerCase(),r])).values()).sort((r,i)=>r.resourceName.localeCompare(i.resourceName));for(let r of t)this.debugComment(r.identifier),this.tsImport(`./${r.tsPackageName}`,r.resourceName);this.lineSM(`export { ${t.map(r=>r.resourceName).join(", ")} }`),this.line(""),this.curlyBlock(["export type ResourceTypeMap = "],()=>{this.lineSM("User: Record<string, any>"),t.forEach(r=>{this.debugComment(r.identifier),this.lineSM(`${r.resourceName}: ${r.resourceName}`);});}),this.lineSM("export type ResourceType = keyof ResourceTypeMap"),this.squareBlock(["export const resourceList: readonly ResourceType[] = "],()=>{t.forEach(r=>{this.debugComment(r.identifier),this.line(`'${r.resourceName}', `);});});});}generateDependenciesImports(e){if(e.dependencies){let t=[...e.dependencies.filter(r=>["complex-type","resource","logical"].includes(r.kind)).map(r=>({tsPackage:`../${le(r.package)}/${pe(r.name)}`,name:Ue(r.name)})),...e.dependencies.filter(r=>["nested"].includes(r.kind)).map(r=>({tsPackage:`../${le(r.package)}/${pe(Je(r.url)??"")}`,name:We(r.url)}))].sort((r,i)=>r.name.localeCompare(i.name));for(let r of t)this.tsImport(r.tsPackage,r.name);}}addFieldExtension(e,t){t.type.kind==="primitive-type"&&this.lineSM(`_${j(e)}?: Element`);}generateType(e){var t;e.identifier.name==="Reference"?t="Reference<T extends string = string>":e.identifier.kind==="nested"?t=j(We(e.identifier.url)):t=j(e.identifier.name);let r=Je(e.base?.url),i=r&&`extends ${r}`;this.debugComment(e.identifier),this.curlyBlock(["export","interface",t,i],()=>{if(!e.fields)return;if(e.identifier.kind==="resource"){let o=[e.identifier];o.push(...It(this.resourceRelatives,e.identifier)),this.lineSM(`resourceType: ${o.map(a=>`'${a.name}'`).join(" | ")}`),this.line();}let n=Object.entries(e.fields).sort((o,a)=>o[0].localeCompare(a[0]));for(let[o,a]of n){let c=$t(a);if(c===void 0)continue;this.debugComment(o,":",c);let l=j(o),p=c.required?"":"?",g=c.array?"[]":"";if(c.type===void 0)continue;let d=c.type.name;c.type.kind==="nested"&&(d=We(c.type.url)),c.type.kind==="primitive-type"&&(d=hr[c.type.name]??"string"),e.identifier.name==="Reference"&&l==="reference"&&(d="`${T}/${string}`"),c.reference?.length&&(d=`Reference<${c.reference.map(f=>`'${f.name}'`).join(" | ")}>`),c.enum&&(d=c.enum.map(u=>`'${u}'`).join(" | ")),this.lineSM(`${l}${p}:`,`${d}${g}`),["resource","complex-type"].includes(e.identifier.kind)&&this.addFieldExtension(o,c);}}),this.line();}generateNestedTypes(e){if(e.nested){this.line();for(let t of e.nested)this.generateType(t);}}generateResourceModule(e){this.cat(`${yr(e.identifier)}`,()=>{if(this.generateDisclaimer(),["complex-type","resource","logical","nested"].includes(e.identifier.kind))this.generateDependenciesImports(e),this.line(),this.generateNestedTypes(e),this.generateType(e);else throw new Error(`Profile generation not implemented for kind: ${e.identifier.kind}`)});}generate(e){this.resourceRelatives=Rt(e);let t=[...Ft(e),...qe(e)],r=kt(t);this.cd("/",()=>{for(let[i,n]of Object.entries(r)){let o=le(i);this.cd(o,()=>{for(let a of n)this.generateResourceModule(a);this.generateFhirPackageIndexFile(n);});}});}};var xr=s=>{let e=()=>s.writtenFiles().map(t=>({path:A.normalize(A.join(s.opts.outputDir,t)),filename:t.replace(/^.*[\\/]/,""),content:"",exports:[],size:0,timestamp:new Date}));return {generate:async t=>(s.generate(t),e()),setOutputDir:t=>s.opts.outputDir=t,build:async t=>e()}},V=class{schemas=[];options;generators=new Map;cache;pendingOperations=[];typeSchemaGenerator;logger;packages=[];progressCallback;typeSchemaConfig;constructor(e={}){this.options={outputDir:e.outputDir||"./generated",verbose:e.verbose??false,overwrite:e.overwrite??true,cache:e.cache??true,typeSchemaConfig:e.typeSchemaConfig,manager:e.manager||null,throwException:e.throwException||false},this.typeSchemaConfig=e.typeSchemaConfig,this.logger=e.logger||S({verbose:this.options.verbose,prefix:"API"}),this.options.cache&&(this.cache=new T(this.typeSchemaConfig));}fromPackage(e,t){return this.packages.push(tt({name:e,version:t||"latest"})),this}fromFiles(...e){this.logger.debug(`Loading from ${e.length} TypeSchema files`);let t=this.loadFromFiles(e);return this.pendingOperations.push(t),this}fromSchemas(e){return this.logger.debug(`Adding ${e.length} TypeSchemas to generation`),this.schemas=[...this.schemas,...e],this}typescript(e={}){let t=`${this.options.outputDir}/types`,r=new B({outputDir:t,moduleFormat:e.moduleFormat||"esm",generateIndex:e.generateIndex??true,includeDocuments:e.includeDocuments??true,namingConvention:e.namingConvention||"PascalCase",includeExtensions:e.includeExtensions??false,includeProfiles:e.includeProfiles??false,generateValueSets:e.generateValueSets??false,includeValueSetHelpers:e.includeValueSetHelpers??false,valueSetStrengths:e.valueSetStrengths??["required"],logger:this.logger.child("TS"),valueSetMode:e.valueSetMode??"required-only",valueSetDirectory:e.valueSetDirectory??"valuesets",verbose:this.options.verbose,validate:true,overwrite:this.options.overwrite});return this.generators.set("typescript",r),this.logger.debug(`Configured TypeScript generator (${e.moduleFormat||"esm"})`),this}typescript2(e){let t={outputDir:A.join(this.options.outputDir,"/types"),tabSize:2,withDebugComment:false,commentLinePrefix:"//"},r={logger:this.logger,...t,...e},i=xr(new ge(r));return this.generators.set("typescript2",i),this.logger.debug(`Configured TypeScript2 generator (${JSON.stringify(r,void 0,2)})`),this}onProgress(e){return this.progressCallback=e,this}outputTo(e){this.logger.debug(`Setting output directory: ${e}`),this.options.outputDir=e;for(let t of this.generators.values())t.setOutputDir&&t.setOutputDir(e);return this}verbose(e=true){return this.options.verbose=e,this.logger?.configure({verbose:e}),this}throwException(e=true){return this.options.throwException=e,this}async generate(){let e=performance.now(),t={success:false,outputDir:this.options.outputDir,filesGenerated:[],errors:[],warnings:[],duration:0};this.logger.debug(`Starting generation with ${this.generators.size} generators`);try{this.logger.info("Initialize Canonical Manager");let r=CanonicalManager({packages:this.packages,workingDir:"tmp/fhir"});await r.init();let i=await N(r,this.logger),n=await dt(i,this.logger);this.logger.debug(`Executing ${this.generators.size} generators`),await this.executeGenerators(t,n),this.logger.info("Generation completed successfully"),t.success=t.errors.length===0,this.logger.debug(`Generation completed: ${t.filesGenerated.length} files`);}catch(r){this.logger.error("Code generation failed",r instanceof Error?r:new Error(String(r))),t.errors.push(r instanceof Error?r.message:String(r));}return {...t,success:t.errors.length===0,duration:performance.now()-e}}async build(){let e={};for(let[t,r]of this.generators.entries())r.build&&(e[t]=await r.build(this.schemas));return e}reset(){return this.schemas=[],this.generators.clear(),this.progressCallback=void 0,this}getSchemas(){return [...this.schemas]}getGenerators(){return Array.from(this.generators.keys())}async loadFromFiles(e){this.typeSchemaGenerator||(this.typeSchemaGenerator=new k({verbose:this.options.verbose,logger:this.logger.child("Schema"),treeshake:this.typeSchemaConfig?.treeshake},this.typeSchemaConfig));let r=await new E({format:"auto"}).parseFromFiles(e);this.schemas=[...this.schemas,...r],this.cache&&this.cache.setMany(r);}async executeGenerators(e,t){for(let[r,i]of this.generators.entries()){this.logger.info(`Generating ${r}...`);try{let n=await i.generate(t);e.filesGenerated.push(...n.map(o=>o.path||o.filename)),this.logger.info(`Generating ${r} finished successfully`);}catch(n){e.errors.push(`${r} generator failed: ${n instanceof Error?n.message:String(n)}`);}}}};var Ke={outputDir:"./generated",verbose:false,overwrite:true,validate:true,cache:true,typescript:{moduleFormat:"esm",generateIndex:true,includeDocuments:false,namingConvention:"PascalCase",strictMode:true,includeProfiles:true,includeExtensions:false,includeCodeSystems:false,includeOperations:false,generateValueSets:false,valueSetDirectory:"valuesets",valueSetMode:"required-only",valueSetStrengths:["required"],includeValueSetHelpers:false,fhirVersion:"R4",resourceTypes:[],maxDepth:10,profileOptions:{generateKind:"interface",includeConstraints:true,includeDocumentation:true,strictMode:false,subfolder:"profiles"},generateBuilders:false,builderOptions:{includeValidation:true,includeFactoryMethods:true,includeInterfaces:true,generateNestedBuilders:true,includeHelperMethods:true,supportPartialBuild:true,includeJSDoc:true,generateFactories:true,includeTypeGuards:true,handleChoiceTypes:true,generateArrayHelpers:true},validatorOptions:{includeCardinality:true,includeTypes:true,includeConstraints:true,includeInvariants:false,validateRequired:true,allowAdditional:false,strictValidation:false,collectMetrics:false,generateAssertions:true,generatePartialValidators:true,optimizePerformance:true,includeJSDoc:true,generateCompositeValidators:true},guardOptions:{includeRuntimeValidation:true,includeErrorMessages:true,treeShakeable:true,targetTSVersion:"5.0",strictGuards:false,includeNullChecks:true,verbose:false}},typeSchema:{enablePersistence:true,cacheDir:".typeschema-cache",maxAge:1440*60*1e3,validateCached:true,forceRegenerate:false,shareCache:true,cacheKeyPrefix:"",treeshake:[],singleFile:false,profiles:{autoDetect:true}},packages:[],files:[],$schema:""},de=["atomic-codegen.config.ts","atomic-codegen.config","atomic-codegen.config.json",".atomic-codegenrc","atomic-codegen.json",".atomic-codegen.json","codegen.config.json","codegen.json"],Ze=class{validate(e){let t={valid:true,errors:[],warnings:[]};if(!e||typeof e!="object")return t.valid=false,t.errors.push({path:"root",message:"Configuration must be an object",value:e}),t;let r=e;r.outputDir!==void 0&&typeof r.outputDir!="string"&&t.errors.push({path:"outputDir",message:"outputDir must be a string",value:r.outputDir});let i=["verbose","overwrite","validate","cache"];for(let n of i)r[n]!==void 0&&typeof r[n]!="boolean"&&t.errors.push({path:n,message:`${n} must be a boolean`,value:r[n]});if(r.typescript!==void 0){let n=this.validateTypeScriptConfig(r.typescript);t.errors.push(...n);}if(r.typeSchema!==void 0){let n=this.validateTypeSchemaConfig(r.typeSchema);t.errors.push(...n);}return r.packages!==void 0&&(Array.isArray(r.packages)?r.packages.forEach((n,o)=>{typeof n!="string"&&t.errors.push({path:`packages[${o}]`,message:"package name must be a string",value:n});}):t.errors.push({path:"packages",message:"packages must be an array",value:r.packages})),r.files!==void 0&&(Array.isArray(r.files)?r.files.forEach((n,o)=>{typeof n!="string"&&t.errors.push({path:`files[${o}]`,message:"file path must be a string",value:n});}):t.errors.push({path:"files",message:"files must be an array",value:r.files})),t.valid=t.errors.length===0,t.valid&&(t.config=r),t}validateTypeScriptConfig(e){let t=[];if(typeof e!="object"||e===null)return t.push({path:"typescript",message:"typescript config must be an object",value:e}),t;let r=e;r.moduleFormat!==void 0&&(["esm","cjs"].includes(r.moduleFormat)||t.push({path:"typescript.moduleFormat",message:'moduleFormat must be "esm" or "cjs"',value:r.moduleFormat})),r.namingConvention!==void 0&&(["PascalCase","camelCase"].includes(r.namingConvention)||t.push({path:"typescript.namingConvention",message:'namingConvention must be "PascalCase" or "camelCase"',value:r.namingConvention}));let i=["generateIndex","includeDocuments","strictMode","includeProfiles","includeExtensions","includeCodeSystems","includeOperations","generateValueSets","includeValueSetHelpers"];for(let n of i)r[n]!==void 0&&typeof r[n]!="boolean"&&t.push({path:`typescript.${n}`,message:`${n} must be a boolean`,value:r[n]});if(r.validatorOptions!==void 0){let n=this.validateValidatorOptions(r.validatorOptions);t.push(...n);}if(r.guardOptions!==void 0){let n=this.validateGuardOptions(r.guardOptions);t.push(...n);}if(r.profileOptions!==void 0){let n=this.validateProfileOptions(r.profileOptions);t.push(...n);}return t}validateValidatorOptions(e){let t=[];if(typeof e!="object"||e===null)return t.push({path:"typescript.validatorOptions",message:"validatorOptions must be an object",value:e}),t;let r=e,i=["includeCardinality","includeTypes","includeConstraints","includeInvariants","validateRequired","allowAdditional","strictValidation","collectMetrics","generateAssertions","generatePartialValidators","optimizePerformance","includeJSDoc","generateCompositeValidators"];for(let n of i)r[n]!==void 0&&typeof r[n]!="boolean"&&t.push({path:`typescript.validatorOptions.${n}`,message:`${n} must be a boolean`,value:r[n]});return t}validateGuardOptions(e){let t=[];if(typeof e!="object"||e===null)return t.push({path:"typescript.guardOptions",message:"guardOptions must be an object",value:e}),t;let r=e;r.targetTSVersion!==void 0&&(["3.8","4.0","4.5","5.0"].includes(r.targetTSVersion)||t.push({path:"typescript.guardOptions.targetTSVersion",message:'targetTSVersion must be one of: "3.8", "4.0", "4.5", "5.0"',value:r.targetTSVersion}));let i=["includeRuntimeValidation","includeErrorMessages","treeShakeable","strictGuards","includeNullChecks","verbose"];for(let n of i)r[n]!==void 0&&typeof r[n]!="boolean"&&t.push({path:`typescript.guardOptions.${n}`,message:`${n} must be a boolean`,value:r[n]});return t}validateProfileOptions(e){let t=[];if(typeof e!="object"||e===null)return t.push({path:"typescript.profileOptions",message:"profileOptions must be an object",value:e}),t;let r=e;r.generateKind!==void 0&&(["interface","type","both"].includes(r.generateKind)||t.push({path:"typescript.profileOptions.generateKind",message:'generateKind must be "interface", "type", or "both"',value:r.generateKind})),r.subfolder!==void 0&&typeof r.subfolder!="string"&&t.push({path:"typescript.profileOptions.subfolder",message:"subfolder must be a string",value:r.subfolder});let i=["includeConstraints","includeDocumentation","strictMode"];for(let n of i)r[n]!==void 0&&typeof r[n]!="boolean"&&t.push({path:`typescript.profileOptions.${n}`,message:`${n} must be a boolean`,value:r[n]});return t}validateTypeSchemaConfig(e){let t=[];if(typeof e!="object"||e===null)return t.push({path:"typeSchema",message:"typeSchema config must be an object",value:e}),t;let r=e,i=["enablePersistence","validateCached","forceRegenerate","shareCache"];for(let o of i)r[o]!==void 0&&typeof r[o]!="boolean"&&t.push({path:`typeSchema.${o}`,message:`${o} must be a boolean`,value:r[o]});let n=["cacheDir","cacheKeyPrefix"];for(let o of n)r[o]!==void 0&&typeof r[o]!="string"&&t.push({path:`typeSchema.${o}`,message:`${o} must be a string`,value:r[o]});if(r.maxAge!==void 0&&(typeof r.maxAge!="number"||r.maxAge<=0)&&t.push({path:"typeSchema.maxAge",message:"maxAge must be a positive number",value:r.maxAge}),r.profiles!==void 0)if(typeof r.profiles!="object"||r.profiles===null)t.push({path:"typeSchema.profiles",message:"profiles must be an object",value:r.profiles});else {let o=r.profiles;o.autoDetect!==void 0&&typeof o.autoDetect!="boolean"&&t.push({path:"typeSchema.profiles.autoDetect",message:"autoDetect must be a boolean",value:o.autoDetect});}return t}},Ye=class{validator=new Ze;async autoload(e=process.cwd()){let t=await this.findConfigFile(e);return t?this.loadFromFile(t):{...Ke}}async loadFromFile(e){try{let t;if(e.endsWith(".ts")||e.endsWith("")){let n=await import(resolve(e));t=n.default||n;}else {let i=await readFile(e,"utf-8");t=JSON.parse(i);}let r=this.validator.validate(t);if(!r.valid){let i=r.errors.map(n=>`${n.path}: ${n.message}`).join(`
+`);for(let r of t)this.line(this.opts.commentLinePrefix,r);}debugComment(...e){this.opts.withDebugComment&&(e=e.map(t=>typeof t=="string"?t:JSON.stringify(t,null,2)),this.comment(...e));}disclaimer(){return ["WARNING: This file is autogenerated by @atomic-ehr/codegen.","GitHub: https://github.com/orgs/atomic-ehr/repositories","Any manual changes made to this file may be overwritten."]}generateDisclaimer(){this.disclaimer().forEach(e=>this.comment(e)),this.line();}curlyBlock(e,t,r){this.line(`${e.filter(Boolean).join(" ")} {`),this.indent(),t(),this.deindent(),this.line(`}${r?.filter(Boolean).join(" ")??""}`);}squareBlock(e,t,r){this.line(`${e.filter(Boolean).join(" ")} [`),this.indent(),t(),this.deindent(),this.line(`]${r?.filter(Boolean).join(" ")??""}`);}};var kt=s=>{let e={};for(let t of s){let r=t.identifier.package;e[r]||(e[r]=[]),e[r].push(t);}for(let[t,r]of Object.entries(e))r.sort((i,n)=>i.identifier.name.localeCompare(n.identifier.name));return e},Ft=s=>s.filter(e=>e.identifier.kind==="complex-type"),qe=s=>s.filter(e=>e.identifier.kind==="resource");var $t=s=>{if(!s.choices)return s.choiceOf,s},Rt=s=>{let e=qe(s),t=[];for(let n of e)n.base&&t.push({parent:n.base,child:n.identifier});let r=[...t],i=n=>{let o=t.filter(c=>c.parent.name===n.name).map(c=>c.child),a=[];for(let c of o)a.push(...i(c));return [...o,...a]};for(let n of t){let o=i(n.child);for(let a of o)t.some(c=>c.parent.name===n.parent.name&&c.child.name===a.name)||r.push({parent:n.parent,child:a});}return r},It=(s,e)=>s.filter(t=>t.parent.name===e.name).map(t=>t.child);var hr={boolean:"boolean",instant:"string",time:"string",date:"string",dateTime:"string",decimal:"number",integer:"number",unsignedInt:"number",positiveInt:"number",integer64:"number",base64Binary:"string",uri:"string",url:"string",canonical:"string",oid:"string",uuid:"string",string:"string",code:"string",markdown:"string",id:"string",xhtml:"string"},Je=(s,e=true)=>{if(!s)return;let t=s.split("/").pop();return e&&t?.includes("#")&&(t=t.split("#")[0]),/^\d/.test(t??"")&&(t=`number_${t}`),t?.replace(/[- ]/g,"_")},Et=s=>pe(s.name),yr=s=>`${Et(s)}.ts`,j=s=>s==="extends"?"extends_":s.replace(/[- ]/g,"_"),br=s=>j(s.name),We=s=>{let e=Je(s,false);if(!e)return "";let[t,r]=e.split("#"),i=Tt((r??"").split(".")).join("");return [t,i].join("")},ge=class extends ue{resourceRelatives=[];tsImport(e,...t){this.lineSM(`import { ${t.join(", ")} } from '${e}'`);}generateFhirPackageIndexFile(e){this.cat("index.ts",()=>{let t=e.map(r=>({identifier:r.identifier,tsPackageName:Et(r.identifier),resourceName:br(r.identifier)})).sort((r,i)=>r.resourceName.localeCompare(i.resourceName));t=Array.from(new Map(t.map(r=>[r.resourceName.toLowerCase(),r])).values()).sort((r,i)=>r.resourceName.localeCompare(i.resourceName));for(let r of t)this.debugComment(r.identifier),this.tsImport(`./${r.tsPackageName}`,r.resourceName);this.lineSM(`export { ${t.map(r=>r.resourceName).join(", ")} }`),this.line(""),this.curlyBlock(["export type ResourceTypeMap = "],()=>{this.lineSM("User: Record<string, any>"),t.forEach(r=>{this.debugComment(r.identifier),this.lineSM(`${r.resourceName}: ${r.resourceName}`);});}),this.lineSM("export type ResourceType = keyof ResourceTypeMap"),this.squareBlock(["export const resourceList: readonly ResourceType[] = "],()=>{t.forEach(r=>{this.debugComment(r.identifier),this.line(`'${r.resourceName}', `);});});});}generateDependenciesImports(e){if(e.dependencies){let t=[...e.dependencies.filter(r=>["complex-type","resource","logical"].includes(r.kind)).map(r=>({tsPackage:`../${le(r.package)}/${pe(r.name)}`,name:Ue(r.name)})),...e.dependencies.filter(r=>["nested"].includes(r.kind)).map(r=>({tsPackage:`../${le(r.package)}/${pe(Je(r.url)??"")}`,name:We(r.url)}))].sort((r,i)=>r.name.localeCompare(i.name));for(let r of t)this.tsImport(r.tsPackage,r.name);}}addFieldExtension(e,t){t.type.kind==="primitive-type"&&this.lineSM(`_${j(e)}?: Element`);}generateType(e){var t;e.identifier.name==="Reference"?t="Reference<T extends string = string>":e.identifier.kind==="nested"?t=j(We(e.identifier.url)):t=j(e.identifier.name);let r=Je(e.base?.url),i=r&&`extends ${r}`;this.debugComment(e.identifier),this.curlyBlock(["export","interface",t,i],()=>{if(!e.fields)return;if(e.identifier.kind==="resource"){let o=[e.identifier];o.push(...It(this.resourceRelatives,e.identifier)),this.lineSM(`resourceType: ${o.map(a=>`'${a.name}'`).join(" | ")}`),this.line();}let n=Object.entries(e.fields).sort((o,a)=>o[0].localeCompare(a[0]));for(let[o,a]of n){let c=$t(a);if(c===void 0)continue;this.debugComment(o,":",c);let l=j(o),p=c.required?"":"?",g=c.array?"[]":"";if(c.type===void 0)continue;let d=c.type.name;c.type.kind==="nested"&&(d=We(c.type.url)),c.type.kind==="primitive-type"&&(d=hr[c.type.name]??"string"),e.identifier.name==="Reference"&&l==="reference"&&(d="`${T}/${string}`"),c.reference?.length&&(d=`Reference<${c.reference.map(f=>`'${f.name}'`).join(" | ")}>`),c.enum&&(d=c.enum.map(u=>`'${u}'`).join(" | ")),this.lineSM(`${l}${p}:`,`${d}${g}`),["resource","complex-type"].includes(e.identifier.kind)&&this.addFieldExtension(o,c);}}),this.line();}generateNestedTypes(e){if(e.nested){this.line();for(let t of e.nested)this.generateType(t);}}generateResourceModule(e){this.cat(`${yr(e.identifier)}`,()=>{if(this.generateDisclaimer(),["complex-type","resource","logical","nested"].includes(e.identifier.kind))this.generateDependenciesImports(e),this.line(),this.generateNestedTypes(e),this.generateType(e);else throw new Error(`Profile generation not implemented for kind: ${e.identifier.kind}`)});}generate(e){this.resourceRelatives=Rt(e);let t=[...Ft(e),...qe(e)],r=kt(t);this.cd("/",()=>{for(let[i,n]of Object.entries(r)){let o=le(i);this.cd(o,()=>{for(let a of n)this.generateResourceModule(a);this.generateFhirPackageIndexFile(n);});}});}};var xr=s=>{let e=()=>s.writtenFiles().map(t=>({path:A.normalize(A.join(s.opts.outputDir,t)),filename:t.replace(/^.*[\\/]/,""),content:"",exports:[],size:0,timestamp:new Date}));return {generate:async t=>(s.generate(t),e()),setOutputDir:t=>s.opts.outputDir=t,build:async t=>e()}},V=class{schemas=[];options;generators=new Map;cache;pendingOperations=[];typeSchemaGenerator;logger;packages=[];progressCallback;typeSchemaConfig;constructor(e={}){this.options={outputDir:e.outputDir||"./generated",verbose:e.verbose??false,overwrite:e.overwrite??true,cache:e.cache??true,typeSchemaConfig:e.typeSchemaConfig,manager:e.manager||null,throwException:e.throwException||false},this.typeSchemaConfig=e.typeSchemaConfig,this.logger=e.logger||S({verbose:this.options.verbose,prefix:"API"}),this.options.cache&&(this.cache=new T(this.typeSchemaConfig));}fromPackage(e,t){return this.packages.push(tt({name:e,version:t||"latest"})),this}fromFiles(...e){this.logger.debug(`Loading from ${e.length} TypeSchema files`);let t=this.loadFromFiles(e);return this.pendingOperations.push(t),this}fromSchemas(e){return this.logger.debug(`Adding ${e.length} TypeSchemas to generation`),this.schemas=[...this.schemas,...e],this}typescript(e={}){let t=`${this.options.outputDir}/types`,r=new B({outputDir:t,moduleFormat:e.moduleFormat||"esm",generateIndex:e.generateIndex??true,includeDocuments:e.includeDocuments??true,namingConvention:e.namingConvention||"PascalCase",includeExtensions:e.includeExtensions??false,includeProfiles:e.includeProfiles??false,generateValueSets:e.generateValueSets??false,includeValueSetHelpers:e.includeValueSetHelpers??false,valueSetStrengths:e.valueSetStrengths??["required"],logger:this.logger.child("TS"),valueSetMode:e.valueSetMode??"required-only",valueSetDirectory:e.valueSetDirectory??"valuesets",verbose:this.options.verbose,validate:true,overwrite:this.options.overwrite});return this.generators.set("typescript",r),this.logger.debug(`Configured TypeScript generator (${e.moduleFormat||"esm"})`),this}typescript2(e){let t={outputDir:A.join(this.options.outputDir,"/types"),tabSize:2,withDebugComment:false,commentLinePrefix:"//"},r={logger:this.logger,...t,...e},i=xr(new ge(r));return this.generators.set("typescript2",i),this.logger.debug(`Configured TypeScript2 generator (${JSON.stringify(r,void 0,2)})`),this}onProgress(e){return this.progressCallback=e,this}outputTo(e){this.logger.debug(`Setting output directory: ${e}`),this.options.outputDir=e;for(let t of this.generators.values())t.setOutputDir&&t.setOutputDir(e);return this}verbose(e=true){return this.options.verbose=e,this.logger?.configure({verbose:e}),this}throwException(e=true){return this.options.throwException=e,this}async generate(){let e=performance.now(),t={success:false,outputDir:this.options.outputDir,filesGenerated:[],errors:[],warnings:[],duration:0};this.logger.debug(`Starting generation with ${this.generators.size} generators`);try{this.logger.info("Initialize Canonical Manager");let r=CanonicalManager({packages:this.packages,workingDir:"tmp/fhir"});await r.init();let i=await N(r,this.logger),n=await dt(i,this.logger);this.logger.debug(`Executing ${this.generators.size} generators`),await this.executeGenerators(t,n),this.logger.info("Generation completed successfully"),t.success=t.errors.length===0,this.logger.debug(`Generation completed: ${t.filesGenerated.length} files`);}catch(r){this.logger.error("Code generation failed",r instanceof Error?r:new Error(String(r))),t.errors.push(r instanceof Error?r.message:String(r));}return {...t,success:t.errors.length===0,duration:performance.now()-e}}async build(){let e={};for(let[t,r]of this.generators.entries())r.build&&(e[t]=await r.build(this.schemas));return e}reset(){return this.schemas=[],this.generators.clear(),this.progressCallback=void 0,this}getSchemas(){return [...this.schemas]}getGenerators(){return Array.from(this.generators.keys())}async loadFromFiles(e){this.typeSchemaGenerator||(this.typeSchemaGenerator=new k({verbose:this.options.verbose,logger:this.logger.child("Schema"),treeshake:this.typeSchemaConfig?.treeshake},this.typeSchemaConfig));let r=await new E({format:"auto"}).parseFromFiles(e);this.schemas=[...this.schemas,...r],this.cache&&this.cache.setMany(r);}async executeGenerators(e,t){for(let[r,i]of this.generators.entries()){this.logger.info(`Generating ${r}...`);try{let n=await i.generate(t);e.filesGenerated.push(...n.map(o=>o.path||o.filename)),this.logger.info(`Generating ${r} finished successfully`);}catch(n){e.errors.push(`${r} generator failed: ${n instanceof Error?n.message:String(n)}`);}}}};var Ke={outputDir:"./generated",verbose:false,overwrite:true,validate:true,cache:true,typescript:{moduleFormat:"esm",generateIndex:true,includeDocuments:false,namingConvention:"PascalCase",strictMode:true,includeProfiles:true,includeExtensions:false,includeCodeSystems:false,includeOperations:false,generateValueSets:false,valueSetDirectory:"valuesets",valueSetMode:"required-only",valueSetStrengths:["required"],includeValueSetHelpers:false,fhirVersion:"R4",resourceTypes:[],maxDepth:10,profileOptions:{generateKind:"interface",includeConstraints:true,includeDocumentation:true,strictMode:false,subfolder:"profiles"},generateBuilders:false,builderOptions:{includeValidation:true,includeFactoryMethods:true,includeInterfaces:true,generateNestedBuilders:true,includeHelperMethods:true,supportPartialBuild:true,includeJSDoc:true,generateFactories:true,includeTypeGuards:true,handleChoiceTypes:true,generateArrayHelpers:true},validatorOptions:{includeCardinality:true,includeTypes:true,includeConstraints:true,includeInvariants:false,validateRequired:true,allowAdditional:false,strictValidation:false,collectMetrics:false,generateAssertions:true,generatePartialValidators:true,optimizePerformance:true,includeJSDoc:true,generateCompositeValidators:true},guardOptions:{includeRuntimeValidation:true,includeErrorMessages:true,treeShakeable:true,targetTSVersion:"5.0",strictGuards:false,includeNullChecks:true,verbose:false}},typeSchema:{enablePersistence:true,cacheDir:".typeschema-cache",maxAge:1440*60*1e3,validateCached:true,forceRegenerate:false,shareCache:true,cacheKeyPrefix:"",treeshake:[],singleFile:false,profiles:{autoDetect:true}},packages:[],files:[],$schema:""},de=["atomic-codegen.config.ts","atomic-codegen.config","atomic-codegen.config.json",".atomic-codegenrc","atomic-codegen.json",".atomic-codegen.json","codegen.config.json","codegen.json"],Ze=class{validate(e){let t={valid:true,errors:[],warnings:[]};if(!e||typeof e!="object")return t.valid=false,t.errors.push({path:"root",message:"Configuration must be an object",value:e}),t;let r=e;r.outputDir!==void 0&&typeof r.outputDir!="string"&&t.errors.push({path:"outputDir",message:"outputDir must be a string",value:r.outputDir});let i=["verbose","overwrite","validate","cache"];for(let n of i)r[n]!==void 0&&typeof r[n]!="boolean"&&t.errors.push({path:n,message:`${n} must be a boolean`,value:r[n]});if(r.typescript!==void 0){let n=this.validateTypeScriptConfig(r.typescript);t.errors.push(...n);}if(r.typeSchema!==void 0){let n=this.validateTypeSchemaConfig(r.typeSchema);t.errors.push(...n);}return r.packages!==void 0&&(Array.isArray(r.packages)?r.packages.forEach((n,o)=>{typeof n!="string"&&t.errors.push({path:`packages[${o}]`,message:"package name must be a string",value:n});}):t.errors.push({path:"packages",message:"packages must be an array",value:r.packages})),r.files!==void 0&&(Array.isArray(r.files)?r.files.forEach((n,o)=>{typeof n!="string"&&t.errors.push({path:`files[${o}]`,message:"file path must be a string",value:n});}):t.errors.push({path:"files",message:"files must be an array",value:r.files})),t.valid=t.errors.length===0,t.valid&&(t.config=r),t}validateTypeScriptConfig(e){let t=[];if(typeof e!="object"||e===null)return t.push({path:"typescript",message:"typescript config must be an object",value:e}),t;let r=e;r.moduleFormat!==void 0&&(["esm","cjs"].includes(r.moduleFormat)||t.push({path:"typescript.moduleFormat",message:'moduleFormat must be "esm" or "cjs"',value:r.moduleFormat})),r.namingConvention!==void 0&&(["PascalCase","camelCase"].includes(r.namingConvention)||t.push({path:"typescript.namingConvention",message:'namingConvention must be "PascalCase" or "camelCase"',value:r.namingConvention}));let i=["generateIndex","includeDocuments","strictMode","includeProfiles","includeExtensions","includeCodeSystems","includeOperations","generateValueSets","includeValueSetHelpers"];for(let n of i)r[n]!==void 0&&typeof r[n]!="boolean"&&t.push({path:`typescript.${n}`,message:`${n} must be a boolean`,value:r[n]});if(r.validatorOptions!==void 0){let n=this.validateValidatorOptions(r.validatorOptions);t.push(...n);}if(r.guardOptions!==void 0){let n=this.validateGuardOptions(r.guardOptions);t.push(...n);}if(r.profileOptions!==void 0){let n=this.validateProfileOptions(r.profileOptions);t.push(...n);}return t}validateValidatorOptions(e){let t=[];if(typeof e!="object"||e===null)return t.push({path:"typescript.validatorOptions",message:"validatorOptions must be an object",value:e}),t;let r=e,i=["includeCardinality","includeTypes","includeConstraints","includeInvariants","validateRequired","allowAdditional","strictValidation","collectMetrics","generateAssertions","generatePartialValidators","optimizePerformance","includeJSDoc","generateCompositeValidators"];for(let n of i)r[n]!==void 0&&typeof r[n]!="boolean"&&t.push({path:`typescript.validatorOptions.${n}`,message:`${n} must be a boolean`,value:r[n]});return t}validateGuardOptions(e){let t=[];if(typeof e!="object"||e===null)return t.push({path:"typescript.guardOptions",message:"guardOptions must be an object",value:e}),t;let r=e;r.targetTSVersion!==void 0&&(["3.8","4.0","4.5","5.0"].includes(r.targetTSVersion)||t.push({path:"typescript.guardOptions.targetTSVersion",message:'targetTSVersion must be one of: "3.8", "4.0", "4.5", "5.0"',value:r.targetTSVersion}));let i=["includeRuntimeValidation","includeErrorMessages","treeShakeable","strictGuards","includeNullChecks","verbose"];for(let n of i)r[n]!==void 0&&typeof r[n]!="boolean"&&t.push({path:`typescript.guardOptions.${n}`,message:`${n} must be a boolean`,value:r[n]});return t}validateProfileOptions(e){let t=[];if(typeof e!="object"||e===null)return t.push({path:"typescript.profileOptions",message:"profileOptions must be an object",value:e}),t;let r=e;r.generateKind!==void 0&&(["interface","type","both"].includes(r.generateKind)||t.push({path:"typescript.profileOptions.generateKind",message:'generateKind must be "interface", "type", or "both"',value:r.generateKind})),r.subfolder!==void 0&&typeof r.subfolder!="string"&&t.push({path:"typescript.profileOptions.subfolder",message:"subfolder must be a string",value:r.subfolder});let i=["includeConstraints","includeDocumentation","strictMode"];for(let n of i)r[n]!==void 0&&typeof r[n]!="boolean"&&t.push({path:`typescript.profileOptions.${n}`,message:`${n} must be a boolean`,value:r[n]});return t}validateTypeSchemaConfig(e){let t=[];if(typeof e!="object"||e===null)return t.push({path:"typeSchema",message:"typeSchema config must be an object",value:e}),t;let r=e,i=["enablePersistence","validateCached","forceRegenerate","shareCache"];for(let o of i)r[o]!==void 0&&typeof r[o]!="boolean"&&t.push({path:`typeSchema.${o}`,message:`${o} must be a boolean`,value:r[o]});let n=["cacheDir","cacheKeyPrefix"];for(let o of n)r[o]!==void 0&&typeof r[o]!="string"&&t.push({path:`typeSchema.${o}`,message:`${o} must be a string`,value:r[o]});if(r.maxAge!==void 0&&(typeof r.maxAge!="number"||r.maxAge<=0)&&t.push({path:"typeSchema.maxAge",message:"maxAge must be a positive number",value:r.maxAge}),r.profiles!==void 0)if(typeof r.profiles!="object"||r.profiles===null)t.push({path:"typeSchema.profiles",message:"profiles must be an object",value:r.profiles});else {let o=r.profiles;o.autoDetect!==void 0&&typeof o.autoDetect!="boolean"&&t.push({path:"typeSchema.profiles.autoDetect",message:"autoDetect must be a boolean",value:o.autoDetect});}return t}},Ye=class{validator=new Ze;async autoload(e=process.cwd()){let t=await this.findConfigFile(e);return t?this.loadFromFile(t):{...Ke}}async loadFromFile(e){try{let t;if(e.endsWith(".ts")||e.endsWith("")){let n=await import(resolve(e));t=n.default||n;}else {let i=await readFile(e,"utf-8");t=JSON.parse(i);}let r=this.validator.validate(t);if(!r.valid){let i=r.errors.map(n=>`${n.path}: ${n.message}`).join(`
 `);throw new Error(`Configuration validation failed:
 ${i}`)}return this.mergeWithDefaults(r.config)}catch(t){throw t instanceof Error?new Error(`Failed to load config from ${e}: ${t.message}`):t}}async findConfigFile(e){for(let t of de){let r=resolve(e,t);if(existsSync(r))return r}return null}mergeWithDefaults(e){return {...Ke,...e,typescript:{...Ke.typescript,...e.typescript}}}},Tr=new Ye;async function fe(s){return Tr.autoload(s)}var Nt={command:"generate",describe:"Generate code based on configuration file settings",builder:s=>s.option("verbose",{alias:"v",type:"boolean",default:false,description:"Enable verbose output"}).example("$0 generate","Generate code using settings from config file").example("$0 generate --verbose","Generate with verbose output"),handler:async s=>{if(s._.length>1){let o=s._.slice(1).join(" ");h(`Invalid syntax: 'atomic-codegen generate ${o}'
 

package/dist/index.js

@@ -5430,8 +5430,8 @@ var Writer = class extends FileSystemWriter {
   }
   disclaimer() {
     return [
-      "WARNING: This file is autogenerated by FHIR Schema Codegen.",
-      "https://github.com/fhir-schema/fhir-schema-codegen",
+      "WARNING: This file is autogenerated by @atomic-ehr/codegen.",
+      "GitHub: https://github.com/orgs/atomic-ehr/repositories",
       "Any manual changes made to this file may be overwritten."
     ];
   }