@atomic-ehr/codegen 0.0.1-canary.20251003081054.6ba9d37 → 0.0.1-canary.20251003082149.3db28b4

package/dist/cli/index.js

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0:B}function h2(D){let F=[];for(let u of D){if(u.base)F.push(u.base);for(let E of Object.values(u.fields||{})){if("type"in E&&E.type)F.push(E.type);if("binding"in E&&E.binding)F.push(E.binding)}}return F}async function JF(D,F,u,E){if(!E)return;let B=D.resolveFsGenealogy(F.url),C={};for(let[Z,Q]of Object.entries(E)){let z=[...u,Z],O=x2(B,z),A=P2(O);C[Z]={elem:Q,elemSnapshot:A,path:z}}for(let[Z,{elem:Q,elemSnapshot:z,path:O}]of Object.entries(C))for(let A of Q?.choices||[])if(!C[A]){let J=[...u,A],W=x2(B,J),_=P2(W);C[A]={elem:void 0,elemSnapshot:_,path:J}}let $={};for(let[Z,{elem:Q,elemSnapshot:z,path:O}]of Object.entries(C))if(w0(z))$[Z]=AF(D,F,O,z);else $[Z]=WF(D,F,O,z);return $}function Z6(D){let F=[];for(let u of Object.values(D)){if("type"in u&&u.type)F.push(u.type);if("binding"in u&&u.binding)F.push(u.binding)}return F}function wu(D){let F=new Set,u=[];for(let E of D){let B=E.url;if(!F.has(B))F.add(B),u.push(E)}return u.sort((E,B)=>E.name.localeCompare(B.name)),u}function Tu(D,F){if(D.base==="Extension"||D.base==="http://hl7.org/fhir/StructureDefinition/Extension")return!0;if(D.url?.includes("/extension/")||D.url?.includes("-extension"))return!0;if(D.name?.toLowerCase().includes("extension"))return!0;if(D.type==="Extension")return!0;return!1}async function bu(D,F,u){try{let E=TD(D);E.kind="value-set";let B={identifier:E,description:D.description};if(D.elements){let C=[];for(let[$,Z]of Object.entries(D.elements))if("code"in Z&&Z.code)C.push({code:Z.code,display:Z.short||Z.definition,system:Z.system});if(C.length>0)B.concept=C}return B}catch(E){return console.warn(`Failed to transform value set ${D.name}: ${E}`),null}}async function xu(D,F,u){try{let E=TD(D),B;if(D.base&&D.base!=="Extension"){let Z=D.base.includes("/")?D.base:`http://hl7.org/fhir/StructureDefinition/${D.base}`;B={kind:"complex-type",package:"hl7.fhir.r4.core",version:"4.0.1",name:D.base.split("/").pop()||D.base,url:Z}}else B={kind:"complex-type",package:"hl7.fhir.r4.core",version:"4.0.1",name:"Extension",url:"http://hl7.org/fhir/StructureDefinition/Extension"};let C={identifier:E,base:B,description:D.description,dependencies:[],metadata:{isExtension:!0}};if(B)C.dependencies.push(B);if(D.elements){let Z=await JF(F,D,[],D.elements);if(Z&&Object.keys(Z).length>0)C.fields=Z,C.dependencies.push(...Z6(Z))}let $=await y2(F,D);if($&&$.length>0)C.nested=$,C.dependencies.push(...h2($));return C.dependencies=wu(C.dependencies),C.dependencies=C.dependencies.filter((Z)=>Z.url!==E.url),C}catch(E){return console.warn(`Failed to transform extension ${D.name}: ${E}`),null}}function Pu(D,F,u,E){let B=[];if(F)B.push(F);if(u)B.push(...Z6(u));if(E)B.push(...h2(E));let C={};for(let Q of B){if(Q.url===D.url)continue;C[Q.url]=Q}let $=new Set(E?.map((Q)=>Q.identifier.url)),Z=Object.values(C).filter((Q)=>!(Q.kind==="nested"&&$.has(Q.url))).sort((Q,z)=>Q.name.localeCompare(z.name));return Z.length>0?Z:void 0}async function Su(D,F){let u=TD(F),E;if(F.base&&F.type!=="Element"){let z=D.resolveFs(D.ensureCanonicalUrl(F.base));if(!z)throw Error(`Base resource not found '${F.base}' for '${F.url}'`);E=TD(z)}let B=await JF(D,F,[],F.elements),C=await y2(D,F),$=Pu(u,E,B,C),Z={identifier:u,base:E,fields:B,nested:C,description:F.description,dependencies:$},Q=await k2(D,F);return[Z,...Q]}async function X6(D,F){let u=[],E=TD(F);if(E.kind==="profile"){let B=await u6(D,F);u.push(B);let C=await k2(D,F);return u.push(...C),u}if(E.kind==="value-set"||F.kind==="value-set"){let B=await bu(F,D,F.package_meta);if(B)u.push(B);return u}if(Tu(F,E)){let B=await xu(F,D,F.package_meta);if(B)u.push(B);return u}return await Su(D,F)}async function vu(D,F){try{let u=await F.resolve(D);if(!u||u.resourceType!=="CodeSystem")return;let E=[],B=(C,$)=>{for(let Z of C)if(E.push({system:$,code:Z.code,display:Z.display}),Z.concept)B(Z.concept,$)};if(u.concept)B(u.concept,D);return E}catch{return}}async function Q6(D,F){let u=[];if(D.concept){for(let E of D.concept)u.push({system:D.system,code:E.code,display:E.display});return u}if(D.system&&!D.filter){let E=await vu(D.system,F);if(E)u.push(...E)}if(D.valueSet)for(let E of D.valueSet)try{let B=await F.resolve(E);if(B){let C=await z6(B,F);if(C)u.push(...C)}}catch{}return u}async function z6(D,F){try{let u=[];if(D.compose){if(D.compose.include)for(let E of D.compose.include){let B=await Q6(E,F);u.push(...B)}if(D.compose.exclude){let E=new Set;for(let B of D.compose.exclude){let C=await Q6(B,F);for(let $ of C)E.add(`${$.system}|${$.code}`)}return u.filter((B)=>!E.has(`${B.system}|${B.code}`))}}return u.length>0?u:void 0}catch(u){console.error("Error extracting ValueSet concepts:",u);return}}async function Y6(D,F,u){let B={identifier:N0(D.url,D)};if(D.description)B.description=D.description;let C=await z6(D,F);if(C&&C.length>0)B.concept=C;else if(D.compose)B.compose=D.compose;if(D.compose){let $=[],Z=(Q)=>{for(let z of Q){if(z.system)$.push({kind:"value-set",package:u?.name||"undefined",version:u?.version||"undefined",name:z.system.split("/").pop()||"unknown",url:z.system});if(z.valueSet)for(let O of z.valueSet)$.push(N0(F,O))}};if(D.compose.include)Z(D.compose.include);if(D.compose.exclude)Z(D.compose.exclude)}return B}class gD{manager;options;cacheConfig;cache;logger;constructor(D={},F){this.options={verbose:!1,...D},this.manager=D.manager||pD({packages:[],workingDir:"tmp/fhir"}),this.cacheConfig=F,this.logger=D.logger||jD({verbose:this.options.verbose,prefix:"TypeSchema"})}async initializeCache(){if(this.cacheConfig&&!this.cache)this.cache=new $0(this.cacheConfig),await this.cache.initialize()}async registerFromPackageMetas(D){let F=D.map((u)=>`${u.name}${u.version}`);return this.logger.step(`Loading FHIR packages: ${F.join(", ")}`),await this.manager.init(),b2(this.manager)}generateFhirSchemas(D){this.logger.progress(`Converting ${D.length} StructureDefinitions to FHIRSchemas`);let F=this.applyStructureDefinitionTreeshaking(D),u=[],E=0,B=0;for(let C of F)try{let $=I0(C);u.push($),E++,this.logger.debug(`Converted StructureDefinition: ${C.name||C.id} (${C.resourceType})`)}catch($){B++,this.logger.warn(`Failed to convert StructureDefinition ${C.name||C.id}: ${$ instanceof Error?$.message:String($)}`)}return this.logger.success(`FHIR Schema conversion completed: ${E}/${F.length} successful, ${B} failed`),u}async generateValueSetSchemas(D,F){if(D.length>0)this.logger.debug(`${D.length} ValueSets available for enum extraction`);let u=[];if(D.length>0){this.logger.progress(`Converting ${D.length} ValueSets to TypeSchema`);let E=0,B=0;for(let C of D)try{let $=await Y6(C,await b2(this.manager),F);if($)u.push($),E++,this.logger.debug(`Converted ValueSet: ${C.name||C.id}`)}catch($){B++,this.logger.warn(`Failed to convert ValueSet ${C.name||C.id}: ${$ instanceof Error?$.message:String($)}`)}this.logger.success(`ValueSet conversion completed: ${E}/${D.length} successful, ${B} failed`)}return u}async generateFromPackage(D,F){if(await this.initializeCache(),this.cache&&!(this.cacheConfig?.forceRegenerate??!1)){let C=this.cache.getByPackage(D);if(C.length>0)return this.logger.info(`Using cached TypeSchemas for package: ${D} (${C.length} schemas)`),C}let u={name:D,version:F||"latest"},E=await this.registerFromPackageMetas([u]),B=[...(await Promise.all(E.allFs().map(async(C)=>await X6(E,C)))).flat(),...await this.generateValueSetSchemas(E.allVs(),u)];if(this.cache)for(let C of B)await this.cache.set(C);return B}applyStructureDefinitionTreeshaking(D){let F=this.options.treeshake;if(!F||F.length===0)return D;this.logger.info(`Applying treeshaking filter for ResourceTypes: ${F.join(", ")}`);let u=new Map,E=new Map,B=new Map;for(let z of D){let O=z.name||z.id;if(O)u.set(O,z),E.set(O,new Set),B.set(O,new Set)}for(let z of D){let O=z.name||z.id;if(!O)continue;let{realDeps:A,refTargets:J}=this.extractStructureDefinitionDependenciesWithReferences(z);E.set(O,new Set(A)),B.set(O,new Set(J))}let C=new Set;for(let z of F)if(u.has(z))C.add(z);else this.logger.warn(`ResourceType '${z}' not found in structure definitions`);let $=(z,O=new Set)=>{if(O.has(z)||!E.has(z))return;O.add(z);let A=E.get(z)||new Set;for(let J of Array.from(A))if(u.has(J))C.add(J),$(J,O)};for(let z of Array.from(C))$(z);let Z=D.filter((z)=>{let O=z.name||z.id;return O&&C.has(O)}),Q=new Set;for(let z of D){let O=z.name||z.id;if(O&&!C.has(O)){if(Array.from(B.values()).some((J)=>J.has(O)))Q.add(O)}}if(Q.size>0)this.logger.info(`Excluded reference-only targets: ${Array.from(Q).join(", ")}`);return this.logger.success(`Treeshaking completed: kept ${Z.length}/${D.length} structure definitions`),Z}extractStructureDefinitionDependenciesWithReferences(D){let F=new Set,u=new Set;if(D.baseDefinition){let E=this.extractResourceNameFromUrl(D.baseDefinition);if(E)F.add(E)}if(D.snapshot?.element||D.differential?.element){let E=D.snapshot?.element||D.differential?.element;for(let B of E)if(B.type)for(let C of B.type){if(C.code){if(F.add(C.code),C.code==="Reference"&&C.targetProfile)for(let $ of C.targetProfile){let Z=this.extractResourceNameFromUrl($);if(Z)u.add(Z)}}if(C.profile)for(let $ of C.profile){let Z=this.extractResourceNameFromUrl($);if(Z)F.add(Z)}}}return{realDeps:Array.from(F),refTargets:Array.from(u)}}extractResourceNameFromUrl(D){let F=D.match(/\/([^/]+)$/);return F?F[1]??null:null}}import{readFile as fu}from"node:fs/promises";class T0{options;constructor(D={}){this.options={format:"auto",validate:!0,strict:!1,...D}}async parseFromFile(D){let F=await fu(D,"utf-8"),u=this.options.format==="auto"?this.detectFormat(F,D):this.options.format;return this.parseFromString(F,u)}async parseFromString(D,F){let u=F||this.detectFormat(D),E;if(u==="ndjson")E=this.parseNDJSON(D);else E=this.parseJSON(D);if(this.options.validate)this.validateSchemas(E);return E}async parseFromFiles(D){let F=[];for(let u of D){let E=await this.parseFromFile(u);F.push(...E)}return F}parseSchema(D){if(!D.identifier)throw Error("TypeSchema must have an identifier");if(!this.isValidIdentifier(D.identifier))throw Error("TypeSchema identifier is invalid");return D}findByIdentifier(D,F){return D.filter((u)=>this.matchesIdentifier(u.identifier,F))}findByUrl(D,F){return D.find((u)=>u.identifier.url===F)}findByKind(D,F){return D.filter((u)=>u.identifier.kind===F)}findByPackage(D,F){return D.filter((u)=>u.identifier.package===F)}detectFormat(D,F){if(F){if(F.endsWith(".ndjson"))return"ndjson";if(F.endsWith(".json"))return"json"}let u=D.trim();if(u.includes(`
+`)}}var $D=x0(u2(),1);class s0{options;constructor(D={}){this.options={timestamp:!1,verbose:!1,...D}}formatMessage(D,F,u){let E=this.options.timestamp?`${$D.default.gray(new Date().toLocaleTimeString())} `:"",B=this.options.prefix?`${$D.default.cyan(`[${this.options.prefix}]`)} `:"";return`${E}${u(D)} ${B}${F}`}success(D){console.log(this.formatMessage("✅",D,$D.default.green))}error(D,F){if(console.error(this.formatMessage("❌",D,$D.default.red)),F&&this.options.verbose){if(console.error($D.default.red(`   ${F.message}`)),F.stack)console.error($D.default.gray(F.stack))}}warn(D){console.warn(this.formatMessage("⚠️",D,$D.default.yellow))}info(D){console.log(this.formatMessage("ℹ️",D,$D.default.blue))}debug(D){if(this.options.verbose)console.log(this.formatMessage("\uD83D\uDC1B",D,$D.default.magenta))}step(D){console.log(this.formatMessage("\uD83D\uDE80",D,$D.default.cyan))}progress(D){console.log(this.formatMessage("⏳",D,$D.default.blue))}plain(D,F=(u)=>u){let u=this.options.timestamp?`${$D.default.gray(new Date().toLocaleTimeString())} `:"",E=this.options.prefix?`${$D.default.cyan(`[${this.options.prefix}]`)} `:"";console.log(`${u}${E}${F(D)}`)}dim(D){this.plain(D,$D.default.gray)}child(D){return new s0({...this.options,prefix:this.options.prefix?`${this.options.prefix}:${D}`:D})}configure(D){this.options={...this.options,...D}}}var B0=new s0;function r0(D){B0.success(D)}function KD(D,F){B0.error(D,F)}function E2(D){B0.warn(D)}function a0(D){B0.info(D)}function B2(D){B0.step(D)}function b3(D){B0.dim(D)}function C2(D){B0.configure(D)}function jD(D={}){return new s0(D)}function $2(D){console.log(),console.log($D.default.cyan($D.default.bold(`━━━ ${D} ━━━`)))}function Z2(D,F,u){let E=D;if(F)E+=` ${$D.default.gray(`(${F}ms)`)}`;if(r0(E),u)Object.entries(u).forEach(([B,C])=>{b3(`  ${B}: ${C}`)})}function C0(D,F="•"){D.forEach((u)=>{console.log($D.default.gray(`  ${F} ${u}`))})}import{existsSync as nu}from"node:fs";import{resolve as iu}from"node:path";import{existsSync as e0,mkdirSync as x3}from"node:fs";import{readdir as P3,readFile as c8,stat as l8,unlink as S3,writeFile as o8}from"node:fs/promises";import{join as X2}from"node:path";class $0{cache=new Map;config;cacheDir;constructor(D){if(this.config={enablePersistence:!0,cacheDir:".typeschema-cache",maxAge:86400000,validateCached:!0,...D},this.config.enablePersistence&&this.config.cacheDir)this.cacheDir=this.config.cacheDir}async set(D){let F=this.generateKey(D.identifier);if(this.cache.set(F,D),this.config.enablePersistence&&this.cacheDir)await this.persistSchema(D)}get(D){let F=this.generateKey(D);return this.cache.get(F)||null}getByUrl(D){for(let F of this.cache.values())if(F.identifier.url===D)return F;return null}has(D){let F=this.generateKey(D);return this.cache.has(F)}hasByUrl(D){for(let F of this.cache.values())if(F.identifier.url===D)return!0;return!1}delete(D){let F=this.generateKey(D);return this.cache.delete(F)}deleteByUrl(D){for(let[F,u]of this.cache.entries())if(u.identifier.url===D)return this.cache.delete(F);return!1}getByPackage(D){let F=[];for(let u of this.cache.values())if(u.identifier.package===D)F.push(u);return F}getByKind(D){let F=[];for(let u of this.cache.values())if(u.identifier.kind===D)F.push(u);return F}setMany(D){for(let F of D)this.set(F)}clear(){this.cache.clear()}generateKey(D){return`${D.package}:${D.version}:${D.kind}:${D.name}`}async initialize(){if(this.config.enablePersistence&&this.cacheDir){if(!e0(this.cacheDir))x3(this.cacheDir,{recursive:!0});await this.loadFromDisk()}}async loadFromDisk(){if(!this.cacheDir||!e0(this.cacheDir))return;try{let F=(await P3(this.cacheDir)).filter((u)=>u.endsWith(".typeschema.json"));for(let u of F){let E=X2(this.cacheDir,u),B=await l8(E);if(this.config.maxAge){if(Date.now()-B.mtimeMs>this.config.maxAge){await S3(E);continue}}try{let C=await c8(E,"utf-8"),$=JSON.parse(C);if(this.config.validateCached){if(!$.schema?.identifier)continue}let Z=this.generateKey($.schema.identifier);this.cache.set(Z,$.schema)}catch(C){console.warn(`Failed to load cached schema from ${u}:`,C)}}}catch(D){console.warn("Failed to load cached schemas from disk:",D)}}async persistSchema(D){if(!this.cacheDir)return;if(!e0(this.cacheDir))x3(this.cacheDir,{recursive:!0});let F={schema:D,timestamp:Date.now(),version:D.identifier.version},u=`${D.identifier.package}-${D.identifier.version}-${D.identifier.kind}-${D.identifier.name}.typeschema.json`.replace(/[^a-zA-Z0-9.-]/g,"_"),E=X2(this.cacheDir,u);try{await o8(E,JSON.stringify(F,null,2),"utf-8")}catch(B){console.warn(`Failed to persist schema to ${E}:`,B)}}async clearDisk(){if(!this.cacheDir||!e0(this.cacheDir))return;try{let F=(await P3(this.cacheDir)).filter((u)=>u.endsWith(".typeschema.json"));for(let u of F)await S3(X2(this.cacheDir,u))}catch(D){console.warn("Failed to clear cache directory:",D)}}}import{createHash as n8}from"crypto";var Q2=(D)=>{let 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Q){if(z.system)$.push({kind:"value-set",package:u?.name||"undefined",version:u?.version||"undefined",name:z.system.split("/").pop()||"unknown",url:z.system});if(z.valueSet)for(let O of z.valueSet)$.push(N0(F,O))}};if(D.compose.include)Z(D.compose.include);if(D.compose.exclude)Z(D.compose.exclude)}return B}class gD{manager;options;cacheConfig;cache;logger;constructor(D={},F){this.options={verbose:!1,...D},this.manager=D.manager||pD({packages:[],workingDir:"tmp/fhir"}),this.cacheConfig=F,this.logger=D.logger||jD({verbose:this.options.verbose,prefix:"TypeSchema"})}async initializeCache(){if(this.cacheConfig&&!this.cache)this.cache=new $0(this.cacheConfig),await this.cache.initialize()}async registerFromPackageMetas(D){let F=D.map((u)=>`${u.name}${u.version}`);return this.logger.step(`Loading FHIR packages: ${F.join(", ")}`),await this.manager.init(),b2(this.manager)}generateFhirSchemas(D){this.logger.progress(`Converting ${D.length} StructureDefinitions to FHIRSchemas`);let F=this.applyStructureDefinitionTreeshaking(D),u=[],E=0,B=0;for(let C of F)try{let $=I0(C);u.push($),E++,this.logger.debug(`Converted StructureDefinition: ${C.name||C.id} (${C.resourceType})`)}catch($){B++,this.logger.warn(`Failed to convert StructureDefinition ${C.name||C.id}: ${$ instanceof Error?$.message:String($)}`)}return this.logger.success(`FHIR Schema conversion completed: ${E}/${F.length} successful, ${B} failed`),u}async generateValueSetSchemas(D,F){if(D.length>0)this.logger.debug(`${D.length} ValueSets available for enum extraction`);let u=[];if(D.length>0){this.logger.progress(`Converting ${D.length} ValueSets to TypeSchema`);let E=0,B=0;for(let C of D)try{let $=await Y6(C,await b2(this.manager),F);if($)u.push($),E++,this.logger.debug(`Converted ValueSet: ${C.name||C.id}`)}catch($){B++,this.logger.warn(`Failed to convert ValueSet ${C.name||C.id}: ${$ instanceof Error?$.message:String($)}`)}this.logger.success(`ValueSet conversion completed: ${E}/${D.length} successful, ${B} failed`)}return u}async generateFromPackage(D,F){if(await this.initializeCache(),this.cache&&!(this.cacheConfig?.forceRegenerate??!1)){let C=this.cache.getByPackage(D);if(C.length>0)return this.logger.info(`Using cached TypeSchemas for package: ${D} (${C.length} schemas)`),C}let u={name:D,version:F||"latest"},E=await this.registerFromPackageMetas([u]),B=[...(await Promise.all(E.allFs().map(async(C)=>await X6(E,C)))).flat(),...await this.generateValueSetSchemas(E.allVs(),u)];if(this.cache)for(let C of B)await this.cache.set(C);return B}applyStructureDefinitionTreeshaking(D){let F=this.options.treeshake;if(!F||F.length===0)return D;this.logger.info(`Applying treeshaking filter for ResourceTypes: ${F.join(", ")}`);let u=new Map,E=new Map,B=new Map;for(let z of D){let O=z.name||z.id;if(O)u.set(O,z),E.set(O,new Set),B.set(O,new Set)}for(let z of D){let O=z.name||z.id;if(!O)continue;let{realDeps:A,refTargets:J}=this.extractStructureDefinitionDependenciesWithReferences(z);E.set(O,new Set(A)),B.set(O,new Set(J))}let C=new Set;for(let z of F)if(u.has(z))C.add(z);else this.logger.warn(`ResourceType '${z}' not found in structure definitions`);let $=(z,O=new Set)=>{if(O.has(z)||!E.has(z))return;O.add(z);let A=E.get(z)||new Set;for(let J of Array.from(A))if(u.has(J))C.add(J),$(J,O)};for(let z of Array.from(C))$(z);let Z=D.filter((z)=>{let O=z.name||z.id;return O&&C.has(O)}),Q=new Set;for(let z of D){let O=z.name||z.id;if(O&&!C.has(O)){if(Array.from(B.values()).some((J)=>J.has(O)))Q.add(O)}}if(Q.size>0)this.logger.info(`Excluded reference-only targets: ${Array.from(Q).join(", ")}`);return this.logger.success(`Treeshaking completed: kept ${Z.length}/${D.length} structure definitions`),Z}extractStructureDefinitionDependenciesWithReferences(D){let F=new Set,u=new Set;if(D.baseDefinition){let E=this.extractResourceNameFromUrl(D.baseDefinition);if(E)F.add(E)}if(D.snapshot?.element||D.differential?.element){let E=D.snapshot?.element||D.differential?.element;for(let B of E)if(B.type)for(let C of B.type){if(C.code){if(F.add(C.code),C.code==="Reference"&&C.targetProfile)for(let $ of C.targetProfile){let Z=this.extractResourceNameFromUrl($);if(Z)u.add(Z)}}if(C.profile)for(let $ of C.profile){let Z=this.extractResourceNameFromUrl($);if(Z)F.add(Z)}}}return{realDeps:Array.from(F),refTargets:Array.from(u)}}extractResourceNameFromUrl(D){let F=D.match(/\/([^/]+)$/);return F?F[1]??null:null}}import{readFile as fu}from"node:fs/promises";class T0{options;constructor(D={}){this.options={format:"auto",validate:!0,strict:!1,...D}}async parseFromFile(D){let F=await fu(D,"utf-8"),u=this.options.format==="auto"?this.detectFormat(F,D):this.options.format;return this.parseFromString(F,u)}async parseFromString(D,F){let u=F||this.detectFormat(D),E;if(u==="ndjson")E=this.parseNDJSON(D);else E=this.parseJSON(D);if(this.options.validate)this.validateSchemas(E);return E}async parseFromFiles(D){let F=[];for(let u of D){let E=await this.parseFromFile(u);F.push(...E)}return F}parseSchema(D){if(!D.identifier)throw Error("TypeSchema must have an identifier");if(!this.isValidIdentifier(D.identifier))throw Error("TypeSchema identifier is invalid");return D}findByIdentifier(D,F){return D.filter((u)=>this.matchesIdentifier(u.identifier,F))}findByUrl(D,F){return D.find((u)=>u.identifier.url===F)}findByKind(D,F){return D.filter((u)=>u.identifier.kind===F)}findByPackage(D,F){return D.filter((u)=>u.identifier.package===F)}detectFormat(D,F){if(F){if(F.endsWith(".ndjson"))return"ndjson";if(F.endsWith(".json"))return"json"}let u=D.trim();if(u.includes(`
 `)){let E=u.split(`
 `).filter((B)=>B.trim());if(E.length>1)try{if(E[0])JSON.parse(E[0]);return"ndjson"}catch{}}return"json"}parseNDJSON(D){let F=[],u=D.split(`
 `).filter((E)=>E.trim());for(let E of u)try{let B=JSON.parse(E);F.push(this.parseSchema(B))}catch(B){if(this.options.strict)throw Error(`Failed to parse NDJSON line: ${B}`)}return F}parseJSON(D){try{let F=JSON.parse(D);if(Array.isArray(F))return F.map((u)=>this.parseSchema(u));else return[this.parseSchema(F)]}catch(F){throw Error(`Failed to parse JSON: ${F}`)}}validateSchemas(D){for(let F of D){if(!F.identifier)throw Error("Schema missing identifier");if(!this.isValidIdentifier(F.identifier))throw Error(`Invalid identifier in schema: ${JSON.stringify(F.identifier)}`)}}isValidIdentifier(D){return typeof D==="object"&&D!==null&&typeof D.kind==="string"&&typeof D.package==="string"&&typeof D.version==="string"&&typeof D.name==="string"&&typeof D.url==="string"}matchesIdentifier(D,F){return(!F.kind||D.kind===F.kind)&&(!F.package||D.package===F.package)&&(!F.version||D.version===F.version)&&(!F.name||D.name===F.name)&&(!F.url||D.url===F.url)}}b0();class m2{options;constructor(D){this.options=D}handleError(D,F){if(D instanceof ID)this.handleGeneratorError(D,F);else this.handleUnknownError(D,F)}handleBatchErrors(D){let F=D.filter((E)=>E instanceof ID),u=D.filter((E)=>!(E instanceof ID));if(F.length>0)this.reportBatchErrors(F);u.forEach((E)=>{this.handleUnknownError(E)})}handleGeneratorError(D,F){switch(this.options.outputFormat){case"json":this.reportErrorAsJson(D);break;case"structured":this.reportErrorStructured(D);break;default:this.reportErrorToConsole(D)}}handleUnknownError(D,F){if(this.options.logger.error("Unexpected error occurred:",D),this.options.verbose){if(console.error(`

package/dist/typeschema/core/binding.d.ts

@@ -12,5 +12,5 @@ export declare function extractValueSetConcepts(valueSetUrl: CanonicalUrl, regis
     display?: string;
 }[] | undefined;
 export declare function buildEnum(element: FHIRSchemaElement, register: Register): string[] | undefined;
-export declare function generateBindingSchema(fhirSchema: RichFHIRSchema, path: string[], element: FHIRSchemaElement, register: Register): Promise<BindingTypeSchema | undefined>;
+export declare function generateBindingSchema(register: Register, fhirSchema: RichFHIRSchema, path: string[], element: FHIRSchemaElement): Promise<BindingTypeSchema | undefined>;
 export declare function collectBindingSchemas(register: Register, fhirSchema: RichFHIRSchema): Promise<BindingTypeSchema[]>;

package/dist/typeschema/core/binding.js

@@ -93,11 +93,11 @@ export function buildEnum(element, register) {
     }
     return codes.length > 0 ? codes : undefined;
 }
-export async function generateBindingSchema(fhirSchema, path, element, register) {
+export async function generateBindingSchema(register, fhirSchema, path, element) {
     if (!element.binding?.valueSet)
         return undefined;
     const identifier = mkBindingIdentifier(fhirSchema, path, element.binding.bindingName);
-    const fieldType = buildFieldType(fhirSchema, path, element, register);
+    const fieldType = buildFieldType(register, fhirSchema, element);
     const valueSetIdentifier = mkValueSetIdentifier(register, element.binding.valueSet);
     const dependencies = [];
     if (fieldType) {
@@ -127,7 +127,7 @@ export async function collectBindingSchemas(register, fhirSchema) {
                 continue;
             processedPaths.add(pathKey);
             if (element.binding) {
-                const binding = await generateBindingSchema(fhirSchema, path, element, register);
+                const binding = await generateBindingSchema(register, fhirSchema, path, element);
                 if (binding) {
                     bindings.push(binding);
                 }

package/dist/typeschema/core/field-builder.d.ts

@@ -3,14 +3,13 @@
  *
  * Functions for transforming FHIRSchema elements into TypeSchema fields
  */
-import type { CanonicalManager } from "@atomic-ehr/fhir-canonical-manager";
 import type { FHIRSchemaElement } from "@atomic-ehr/fhirschema";
 import type { Register } from "@root/typeschema/register";
 import type { Field, Identifier, PackageMeta, RegularField, RichFHIRSchema } from "../types";
 export declare function isRequired(register: Register, fhirSchema: RichFHIRSchema, path: string[]): boolean;
 export declare function isExcluded(register: Register, fhirSchema: RichFHIRSchema, path: string[]): boolean;
 export declare const buildReferences: (element: FHIRSchemaElement, register: Register, _packageInfo?: PackageMeta) => Identifier[] | undefined;
-export declare function buildFieldType(fhirSchema: RichFHIRSchema, _path: string[], element: FHIRSchemaElement, _manager: ReturnType<typeof CanonicalManager>, packageInfo?: PackageMeta): Identifier | undefined;
+export declare function buildFieldType(register: Register, fhirSchema: RichFHIRSchema, element: FHIRSchemaElement): Identifier | undefined;
 export declare const mkField: (register: Register, fhirSchema: RichFHIRSchema, path: string[], element: FHIRSchemaElement) => Field;
 export declare function isNestedElement(element: FHIRSchemaElement): boolean;
 export declare function mkNestedField(register: Register, fhirSchema: RichFHIRSchema, path: string[], element: FHIRSchemaElement): RegularField;

package/dist/typeschema/core/field-builder.js

@@ -48,7 +48,7 @@ export const buildReferences = (element, register, _packageInfo) => {
         return mkIdentifier(fs);
     });
 };
-export function buildFieldType(fhirSchema, _path, element, _manager, packageInfo) {
+export function buildFieldType(register, fhirSchema, element) {
     // Handle element reference (for slicing)
     if (element.elementReference) {
         const refPath = element.elementReference
@@ -60,20 +60,19 @@ export function buildFieldType(fhirSchema, _path, element, _manager, packageInfo
             return mkNestedIdentifier(fhirSchema, refPath);
         }
     }
-    // Handle normal type
     if (element.type) {
-        const typeUrl = element.type.includes("/")
-            ? element.type
-            : `http://hl7.org/fhir/StructureDefinition/${element.type}`;
-        // Always create a type identifier, even if we can't resolve
         const kind = element.type.match(/^[a-z]/) ? "primitive-type" : "complex-type";
-        const isStandardFhir = typeUrl.startsWith("http://hl7.org/fhir/");
+        const url = register.ensureCanonicalUrl(element.type);
+        const fieldFs = register.resolveFs(url);
+        if (!fieldFs) {
+            throw new Error(`Could not resolve field '${element.type}'`);
+        }
         return {
             kind: kind,
-            package: isStandardFhir ? "hl7.fhir.r4.core" : packageInfo?.name || "undefined",
-            version: isStandardFhir ? "4.0.1" : packageInfo?.version || "undefined",
+            package: fieldFs.package_meta.name,
+            version: fieldFs.package_meta.version,
             name: element.type,
-            url: typeUrl,
+            url: url,
         };
     }
     return undefined;
@@ -88,7 +87,7 @@ export const mkField = (register, fhirSchema, path, element) => {
         }
     }
     return {
-        type: buildFieldType(fhirSchema, path, element, register, fhirSchema.package_meta),
+        type: buildFieldType(register, fhirSchema, element),
         required: isRequired(register, fhirSchema, path),
         excluded: isExcluded(register, fhirSchema, path),
         reference: buildReferences(element, register, fhirSchema.package_meta),

package/dist/typeschema/register.d.ts

@@ -4,7 +4,7 @@ import type { CodegenLogger } from "@root/utils/codegen-logger";
 import type { CanonicalUrl, Name, PackageMeta, RichFHIRSchema } from "@typeschema/types";
 export type Register = {
     appendFs(fs: FHIRSchema): void;
-    ensureCanonicalUrl(name: Name | CanonicalUrl): CanonicalUrl;
+    ensureCanonicalUrl(name: string | Name | CanonicalUrl): CanonicalUrl;
     resolveSd(canonicalUrl: CanonicalUrl): StructureDefinition | undefined;
     resolveFs(canonicalUrl: CanonicalUrl): RichFHIRSchema | undefined;
     resolveFsGenealogy(canonicalUrl: CanonicalUrl): RichFHIRSchema[];

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@atomic-ehr/codegen",
-  "version": "0.0.1-canary.20251003081054.6ba9d37",
+  "version": "0.0.1-canary.20251003082149.3db28b4",
   "description": "Code generation tools for FHIR resources and TypeSchema definitions",
   "keywords": [
     "fhir",