@atomic-ehr/codegen 0.0.1-canary.20250822153920.e501dd0 → 0.0.1-canary.20250826204510.8c2fcc0

package/dist/api/generators/typescript.d.ts

@@ -89,6 +89,10 @@ export declare class TypeScriptGenerator extends BaseGenerator<TypeScriptGenerat
      * Capitalize first letter of string
      */
     private capitalizeFirst;
+    /**
+     * Generate field lines (handles polymorphic fields by expanding them)
+     */
+    private generateFieldLines;
     /**
      * Generate a single field line
      */

package/dist/api/generators/typescript.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"typescript.d.ts","sourceRoot":"","sources":["../../../src/api/generators/typescript.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,oCAAoC,CAAC;AACrE,OAAO,EAAE,aAAa,EAAE,MAAM,yBAAyB,CAAC;AACxD,OAAO,EAEN,KAAK,2BAA2B,EAChC,MAAM,gCAAgC,CAAC;AACxC,OAAO,KAAK,EACX,oBAAoB,EACpB,aAAa,EACb,eAAe,EACf,UAAU,EACV,MAAM,iBAAiB,CAAC;AAEzB;;GAEG;AACH,MAAM,WAAW,0BAA2B,SAAQ,oBAAoB;IACvE,wCAAwC;IACxC,YAAY,CAAC,EAAE,KAAK,GAAG,KAAK,CAAC;IAE7B,sCAAsC;IACtC,aAAa,CAAC,EAAE,OAAO,CAAC;IAExB,kCAAkC;IAClC,gBAAgB,CAAC,EAAE,OAAO,CAAC;IAE3B,kCAAkC;IAClC,gBAAgB,CAAC,EAAE,YAAY,GAAG,WAAW,CAAC;IAE9C,8BAA8B;IAC9B,iBAAiB,CAAC,EAAE,OAAO,CAAC;IAE5B,4BAA4B;IAC5B,eAAe,CAAC,EAAE,OAAO,CAAC;IAE1B,0BAA0B;IAC1B,iBAAiB,CAAC,EAAE,2BAA2B,CAAC;CAChD;AAED;;GAEG;AACH,MAAM,WAAW,mBAAmB;IACnC,OAAO,EAAE,MAAM,CAAC;IAChB,OAAO,EAAE,GAAG,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;IAC7B,OAAO,EAAE,MAAM,EAAE,CAAC;IAClB,QAAQ,EAAE,MAAM,CAAC;CACjB;AAED;;;;;GAKG;AACH,qBAAa,mBAAoB,SAAQ,aAAa,CACrD,0BAA0B,EAC1B,aAAa,EAAE,CACf;IACA,OAAO,CAAC,QAAQ,CAAC,iBAAiB,CAG9B;IACJ,OAAO,CAAC,QAAQ,CAAC,aAAa,CAAqB;IAEnD,OAAO,KAAK,SAAS,GAEpB;IAED,SAAS,CAAC,eAAe,IAAI,MAAM;IAInC,SAAS,CAAC,gBAAgB,IAAI,MAAM;cAIjB,gBAAgB,IAAI,UAAU;cAajC,qBAAqB,CACpC,MAAM,EAAE,UAAU,EAClB,OAAO,EAAE,eAAe,GACtB,OAAO,CAAC,MAAM,CAAC;IA0DlB,SAAS,CAAC,oBAAoB,CAAC,OAAO,EAAE,UAAU,EAAE,GAAG,UAAU,EAAE;cAInD,eAAe,CAC9B,OAAO,EAAE,MAAM,EACf,OAAO,EAAE,eAAe,GACtB,OAAO,CAAC,IAAI,CAAC;IAmBhB;;OAEG;IACG,gBAAgB,CACrB,OAAO,EAAE,UAAU,EAAE,GACnB,OAAO,CAAC,mBAAmB,EAAE,CAAC;IAajC;;OAEG;IACG,eAAe,CACpB,MAAM,EAAE,UAAU,GAChB,OAAO,CAAC,mBAAmB,GAAG,SAAS,CAAC;IAkC3C,OAAO,CAAC,gBAAgB;IAqBxB,OAAO,CAAC,oBAAoB;IAK5B,OAAO,CAAC,yBAAyB;IAwBjC,OAAO,CAAC,yBAAyB;IAmBjC,OAAO,CAAC,mBAAmB;IAI3B;;OAEG;IACH,OAAO,CAAC,0BAA0B;IA4DlC;;OAEG;IACH,OAAO,CAAC,2BAA2B;IAwEnC;;OAEG;IACH,OAAO,CAAC,mBAAmB;IAsC3B;;OAEG;IACH,OAAO,CAAC,qBAAqB;IAqB7B;;OAEG;IACH,OAAO,CAAC,2BAA2B;IAsCnC;;OAEG;IACH,OAAO,CAAC,eAAe;IAIvB;;OAEG;IACH,OAAO,CAAC,kBAAkB;IAc1B;;OAEG;IACH,OAAO,CAAC,iBAAiB;IAsDzB;;OAEG;cACgB,cAAc,CAAC,OAAO,EAAE,MAAM,GAAG,MAAM,EAAE;IAoC5D;;OAEG;IACH,YAAY,CAAC,SAAS,EAAE,MAAM,GAAG,IAAI;IAIrC;;OAEG;IACH,UAAU,CAAC,OAAO,EAAE,OAAO,CAAC,0BAA0B,CAAC,GAAG,IAAI;IAI9D;;OAEG;IACH,UAAU,IAAI,0BAA0B;IAIxC;;OAEG;cACsB,sBAAsB,IAAI,OAAO,CAAC,IAAI,CAAC;IAMhE;;OAEG;YACW,qBAAqB;CA2DnC"}

package/dist/api/generators/typescript.js

@@ -227,9 +227,11 @@ export class TypeScriptGenerator extends BaseGenerator {
                     lines.push("  type?: T;");
                 }
                 else {
-                    const fieldLine = this.generateFieldLine(fieldName, field);
-                    if (fieldLine) {
-                        lines.push(`  ${fieldLine}`);
+                    const fieldLines = this.generateFieldLines(fieldName, field);
+                    for (const fieldLine of fieldLines) {
+                        if (fieldLine) {
+                            lines.push(`  ${fieldLine}`);
+                        }
                     }
                 }
             }
@@ -290,9 +292,11 @@ export class TypeScriptGenerator extends BaseGenerator {
         // Generate fields (if any)
         if ("fields" in schema && schema.fields) {
             for (const [fieldName, field] of Object.entries(schema.fields)) {
-                const fieldLine = this.generateFieldLine(fieldName, field);
-                if (fieldLine) {
-                    lines.push(`  ${fieldLine}`);
+                const fieldLines = this.generateFieldLines(fieldName, field);
+                for (const fieldLine of fieldLines) {
+                    if (fieldLine) {
+                        lines.push(`  ${fieldLine}`);
+                    }
                 }
             }
         }
@@ -304,6 +308,11 @@ export class TypeScriptGenerator extends BaseGenerator {
      */
     collectFieldImports(field) {
         const imports = [];
+        // Skip polymorphic declaration fields (they don't have types to import)
+        if ("choices" in field && field.choices && Array.isArray(field.choices)) {
+            return imports;
+        }
+        // Handle all other fields (regular fields and polymorphic instance fields)
         if ("type" in field && field.type) {
             // Handle nested types - they don't need imports as they're in the same file
             if (field.type.kind === "nested") {
@@ -327,7 +336,7 @@ export class TypeScriptGenerator extends BaseGenerator {
                 }
             }
         }
-        return imports;
+        return [...new Set(imports)]; // Remove duplicates
     }
     /**
      * Extract resource types from reference field constraints
@@ -368,9 +377,11 @@ export class TypeScriptGenerator extends BaseGenerator {
         // Generate fields
         if (nestedType.fields) {
             for (const [fieldName, field] of Object.entries(nestedType.fields)) {
-                const fieldLine = this.generateFieldLine(fieldName, field);
-                if (fieldLine) {
-                    lines.push(`  ${fieldLine}`);
+                const fieldLines = this.generateFieldLines(fieldName, field);
+                for (const fieldLine of fieldLines) {
+                    if (fieldLine) {
+                        lines.push(`  ${fieldLine}`);
+                    }
                 }
             }
         }
@@ -383,6 +394,21 @@ export class TypeScriptGenerator extends BaseGenerator {
     capitalizeFirst(str) {
         return str.charAt(0).toUpperCase() + str.slice(1);
     }
+    /**
+     * Generate field lines (handles polymorphic fields by expanding them)
+     */
+    generateFieldLines(fieldName, field) {
+        // Check if this field has choices (polymorphic declaration field)
+        if ("choices" in field && field.choices && Array.isArray(field.choices)) {
+            // Skip declaration fields - the actual instance fields are generated separately
+            // Declaration fields like `{"choices": ["deceasedBoolean", "deceasedDateTime"]}` 
+            // are just metadata and shouldn't be rendered as actual TypeScript fields
+            return [];
+        }
+        // For all other fields (including polymorphic instance fields with choiceOf), generate normally
+        const fieldLine = this.generateFieldLine(fieldName, field);
+        return fieldLine ? [fieldLine] : [];
+    }
     /**
      * Generate a single field line
      */

package/dist/cli/index.js

@@ -1265,10 +1265,10 @@ ${D.map((B)=>`  '${B}': ${B};`).join(`
 
 `);if(E)return`${B}
 
-${E}`;return B}filterAndSortSchemas(D){return D.filter((F)=>!this.shouldSkipSchema(F))}async validateContent(D,F){let B=/export\s+(interface|class|type|enum)\s+\w+/.test(D),E=D.includes("{")&&D.includes("}");if(!B)throw new Error(`Generated content for ${F.schema.identifier.name} does not contain valid export statements`);if(!E)throw new Error(`Generated content for ${F.schema.identifier.name} has invalid syntax (missing braces)`)}async transformSchemas(D){let F=[];for(let B of D){let E=await this.transformSchema(B);if(E)F.push(E)}return F}async transformSchema(D){if(this.shouldSkipSchema(D))return;let F={schema:D,typeMapper:this.typeMapper,filename:this.getFilenameForSchema(D),language:"TypeScript",timestamp:new Date().toISOString()},B=await this.generateSchemaContent(D,F);if(!B.trim())return;let E=this.extractImportsFromContent(B,D),C=this.extractExportsFromContent(B,D),u=this.getFilenameForSchema(D);return{content:B,imports:E,exports:Array.from(C),filename:u}}shouldSkipSchema(D){if(D.identifier.kind==="value-set"||D.identifier.kind==="binding"||D.identifier.kind==="primitive-type")return!0;if(D.identifier.url?.includes("/extension/")&&!this.tsOptions.includeExtensions)return!0;return!1}getFilenameForSchema(D){return`${this.typeMapper.formatFileName(D.identifier.name)}${this.getFileExtension()}`}extractImportsFromContent(D,F){let B=new Map,E=/import\s+(?:type\s+)?{\s*([^}]+)\s*}\s+from\s+['"]([^'"]+)['"];?/g,C;while((C=E.exec(D))!==null){let u=C[1],$=C[2];if(!u||!$)continue;let X=u.split(",").map((Q)=>Q.trim());for(let Q of X)B.set(Q,$)}return B}extractExportsFromContent(D,F){let B=new Set,E=/export\s+(?:interface|class|enum|type)\s+([A-Za-z_$][A-Za-z0-9_$]*)/g,C;while((C=E.exec(D))!==null)if(C[1])B.add(C[1]);return B.add(this.typeMapper.formatTypeName(F.identifier.name)),B}sanitizePackageName(D){return D.replace(/[^a-zA-Z0-9-_.]/g,"-")}generateReferenceInterface(D){let F=[],B=new Set;if("fields"in D&&D.fields)for(let[,E]of Object.entries(D.fields))this.collectFieldImports(E).forEach((u)=>B.add(u));if(F.push("import type { ResourceType } from './utilities.js';"),B.size>0){let E=Array.from(B).sort();for(let C of E)F.push(`import type { ${C} } from './${C}.js';`)}if(F.push(""),this.tsOptions.includeDocuments&&D.description){if(F.push("/**"),F.push(` * ${D.description}`),D.identifier.url)F.push(` * @see ${D.identifier.url}`);if(D.identifier.package)F.push(` * @package ${D.identifier.package}`);F.push(" * @template T - The resource type being referenced"),F.push(" */")}if(F.push("export interface Reference<T extends ResourceType = ResourceType> {"),"fields"in D&&D.fields)for(let[E,C]of Object.entries(D.fields))if(E==="type")F.push("  type?: T;");else{let u=this.generateFieldLine(E,C);if(u)F.push(`  ${u}`)}return F.push("}"),F.join(`
-`)}generateTypeScriptInterface(D){let F=[],B=this.typeMapper.formatTypeName(D.identifier.name),E=new Set;if("fields"in D&&D.fields)for(let[,C]of Object.entries(D.fields))this.collectFieldImports(C).forEach(($)=>E.add($));if("nested"in D&&D.nested&&Array.isArray(D.nested)){for(let C of D.nested)if(C.fields)for(let[,u]of Object.entries(C.fields))this.collectFieldImports(u).forEach((X)=>E.add(X))}if(E.size>0){let C=Array.from(E).sort();for(let u of C)F.push(`import type { ${u} } from './${u}.js';`);F.push("")}if(this.tsOptions.includeDocuments&&D.description){if(F.push("/**"),F.push(` * ${D.description}`),D.identifier.url)F.push(` * @see ${D.identifier.url}`);if(D.identifier.package)F.push(` * @package ${D.identifier.package}`);F.push(" */")}if(F.push(`export interface ${B} {`),D.identifier.kind==="resource")F.push(`  resourceType: '${B}';`);if("fields"in D&&D.fields)for(let[C,u]of Object.entries(D.fields)){let $=this.generateFieldLine(C,u);if($)F.push(`  ${$}`)}return F.push("}"),F.join(`
-`)}collectFieldImports(D){let F=[];if("type"in D&&D.type){if(D.type.kind==="nested")return F;let B=this.typeMapper.mapType(D.type);if(!B.isPrimitive&&B.name!=="any"){if(!["string","number","boolean","Date","object","unknown","any"].includes(B.name))F.push(B.name)}}return F}extractReferenceTypes(D){let F=[];if(!Array.isArray(D))return F;for(let B of D){if(!B||typeof B!=="object")continue;if(B.kind==="resource"&&B.name){let E=this.typeMapper.formatTypeName(B.name);F.push(E)}}return[...new Set(F)]}generateNestedTypeInterface(D,F){let B=[],E=this.typeMapper.formatTypeName(`${D}${this.capitalizeFirst(F.identifier.name)}`);if(this.tsOptions.includeDocuments&&F.description){if(B.push("/**"),B.push(` * ${F.description}`),F.identifier.url)B.push(` * @see ${F.identifier.url}`);B.push(" */")}if(B.push(`export interface ${E} {`),F.fields)for(let[C,u]of Object.entries(F.fields)){let $=this.generateFieldLine(C,u);if($)B.push(`  ${$}`)}return B.push("}"),B.join(`
-`)}capitalizeFirst(D){return D.charAt(0).toUpperCase()+D.slice(1)}generateFieldLine(D,F){let B="any",E=!1,C=!1;if("type"in F&&F.type){if(B=this.typeMapper.mapType(F.type).name,F.type.kind==="nested"){let Q=F.type.url?.split("#")||[];if(Q.length===2){let z=Q[0].split("/").pop()||"",Y=F.type.name;B=this.typeMapper.formatTypeName(`${z}${this.capitalizeFirst(Y)}`)}else B=this.typeMapper.formatTypeName(F.type.name)}else if(B==="Reference"&&F.reference&&Array.isArray(F.reference)){let Q=this.extractReferenceTypes(F.reference);if(Q.length>0)Q.forEach((Y)=>this.resourceTypes.add(Y)),B=`Reference<${Q.map((Y)=>`'${Y}'`).join(" | ")}>`}}if("required"in F)E=F.required;if("array"in F)C=F.array;return`${D}${E?"":"?"}: ${B}${C?"[]":""};`}extractExports(D){let F=[],B=/export\s*\{\s*([^}]+)\s*\}/g,E;while((E=B.exec(D))!==null)if(E[1]){let u=E[1].split(",").map(($)=>$.trim()).filter(Boolean);F.push(...u)}let C=[/export\s+interface\s+(\w+)/g,/export\s+type\s+(\w+)/g,/export\s+class\s+(\w+)/g,/export\s+enum\s+(\w+)/g,/export\s+const\s+(\w+)/g,/export\s+function\s+(\w+)/g];for(let u of C){let $;while(($=u.exec(D))!==null)if($[1])F.push($[1])}return[...new Set(F)]}setOutputDir(D){this.options.outputDir=D}setOptions(D){this.options={...this.options,...D}}getOptions(){return{...this.options}}async runPostGenerationHooks(){await super.runPostGenerationHooks(),await this.generateUtilitiesFile()}async generateUtilitiesFile(){if(this.resourceTypes.size===0){this.logger.warn("No resource types found, skipping utilities.ts generation");return}let D=[];D.push("/**"),D.push(" * FHIR Resource Type Utilities"),D.push(" * This file contains utility types for FHIR resources."),D.push(" * "),D.push(" * @generated This file is auto-generated. Do not edit manually."),D.push(" */"),D.push("");let F=Array.from(this.resourceTypes).sort();D.push("/**"),D.push(" * Union of all FHIR resource types in this package"),D.push(" */"),D.push("export type ResourceType =");for(let E=0;E<F.length;E++){let u=E===F.length-1?";":"";D.push(`  | '${F[E]}'${u}`)}D.push(""),D.push("/**"),D.push(" * Helper type for creating typed References"),D.push(" * @example Reference<'Patient' | 'Practitioner'> - Reference that can point to Patient or Practitioner"),D.push(" */"),D.push("export type TypedReference<T extends ResourceType> = {"),D.push("  reference?: string;"),D.push("  type?: T;"),D.push("  identifier?: any; // Simplified for utility"),D.push("  display?: string;"),D.push("};");let B=D.join(`
+${E}`;return B}filterAndSortSchemas(D){return D.filter((F)=>!this.shouldSkipSchema(F))}async validateContent(D,F){let B=/export\s+(interface|class|type|enum)\s+\w+/.test(D),E=D.includes("{")&&D.includes("}");if(!B)throw new Error(`Generated content for ${F.schema.identifier.name} does not contain valid export statements`);if(!E)throw new Error(`Generated content for ${F.schema.identifier.name} has invalid syntax (missing braces)`)}async transformSchemas(D){let F=[];for(let B of D){let E=await this.transformSchema(B);if(E)F.push(E)}return F}async transformSchema(D){if(this.shouldSkipSchema(D))return;let F={schema:D,typeMapper:this.typeMapper,filename:this.getFilenameForSchema(D),language:"TypeScript",timestamp:new Date().toISOString()},B=await this.generateSchemaContent(D,F);if(!B.trim())return;let E=this.extractImportsFromContent(B,D),C=this.extractExportsFromContent(B,D),u=this.getFilenameForSchema(D);return{content:B,imports:E,exports:Array.from(C),filename:u}}shouldSkipSchema(D){if(D.identifier.kind==="value-set"||D.identifier.kind==="binding"||D.identifier.kind==="primitive-type")return!0;if(D.identifier.url?.includes("/extension/")&&!this.tsOptions.includeExtensions)return!0;return!1}getFilenameForSchema(D){return`${this.typeMapper.formatFileName(D.identifier.name)}${this.getFileExtension()}`}extractImportsFromContent(D,F){let B=new Map,E=/import\s+(?:type\s+)?{\s*([^}]+)\s*}\s+from\s+['"]([^'"]+)['"];?/g,C;while((C=E.exec(D))!==null){let u=C[1],$=C[2];if(!u||!$)continue;let X=u.split(",").map((Q)=>Q.trim());for(let Q of X)B.set(Q,$)}return B}extractExportsFromContent(D,F){let B=new Set,E=/export\s+(?:interface|class|enum|type)\s+([A-Za-z_$][A-Za-z0-9_$]*)/g,C;while((C=E.exec(D))!==null)if(C[1])B.add(C[1]);return B.add(this.typeMapper.formatTypeName(F.identifier.name)),B}sanitizePackageName(D){return D.replace(/[^a-zA-Z0-9-_.]/g,"-")}generateReferenceInterface(D){let F=[],B=new Set;if("fields"in D&&D.fields)for(let[,E]of Object.entries(D.fields))this.collectFieldImports(E).forEach((u)=>B.add(u));if(F.push("import type { ResourceType } from './utilities.js';"),B.size>0){let E=Array.from(B).sort();for(let C of E)F.push(`import type { ${C} } from './${C}.js';`)}if(F.push(""),this.tsOptions.includeDocuments&&D.description){if(F.push("/**"),F.push(` * ${D.description}`),D.identifier.url)F.push(` * @see ${D.identifier.url}`);if(D.identifier.package)F.push(` * @package ${D.identifier.package}`);F.push(" * @template T - The resource type being referenced"),F.push(" */")}if(F.push("export interface Reference<T extends ResourceType = ResourceType> {"),"fields"in D&&D.fields)for(let[E,C]of Object.entries(D.fields))if(E==="type")F.push("  type?: T;");else{let u=this.generateFieldLines(E,C);for(let $ of u)if($)F.push(`  ${$}`)}return F.push("}"),F.join(`
+`)}generateTypeScriptInterface(D){let F=[],B=this.typeMapper.formatTypeName(D.identifier.name),E=new Set;if("fields"in D&&D.fields)for(let[,C]of Object.entries(D.fields))this.collectFieldImports(C).forEach(($)=>E.add($));if("nested"in D&&D.nested&&Array.isArray(D.nested)){for(let C of D.nested)if(C.fields)for(let[,u]of Object.entries(C.fields))this.collectFieldImports(u).forEach((X)=>E.add(X))}if(E.size>0){let C=Array.from(E).sort();for(let u of C)F.push(`import type { ${u} } from './${u}.js';`);F.push("")}if(this.tsOptions.includeDocuments&&D.description){if(F.push("/**"),F.push(` * ${D.description}`),D.identifier.url)F.push(` * @see ${D.identifier.url}`);if(D.identifier.package)F.push(` * @package ${D.identifier.package}`);F.push(" */")}if(F.push(`export interface ${B} {`),D.identifier.kind==="resource")F.push(`  resourceType: '${B}';`);if("fields"in D&&D.fields)for(let[C,u]of Object.entries(D.fields)){let $=this.generateFieldLines(C,u);for(let X of $)if(X)F.push(`  ${X}`)}return F.push("}"),F.join(`
+`)}collectFieldImports(D){let F=[];if("choices"in D&&D.choices&&Array.isArray(D.choices))return F;if("type"in D&&D.type){if(D.type.kind==="nested")return F;let B=this.typeMapper.mapType(D.type);if(!B.isPrimitive&&B.name!=="any"){if(!["string","number","boolean","Date","object","unknown","any"].includes(B.name))F.push(B.name)}}return[...new Set(F)]}extractReferenceTypes(D){let F=[];if(!Array.isArray(D))return F;for(let B of D){if(!B||typeof B!=="object")continue;if(B.kind==="resource"&&B.name){let E=this.typeMapper.formatTypeName(B.name);F.push(E)}}return[...new Set(F)]}generateNestedTypeInterface(D,F){let B=[],E=this.typeMapper.formatTypeName(`${D}${this.capitalizeFirst(F.identifier.name)}`);if(this.tsOptions.includeDocuments&&F.description){if(B.push("/**"),B.push(` * ${F.description}`),F.identifier.url)B.push(` * @see ${F.identifier.url}`);B.push(" */")}if(B.push(`export interface ${E} {`),F.fields)for(let[C,u]of Object.entries(F.fields)){let $=this.generateFieldLines(C,u);for(let X of $)if(X)B.push(`  ${X}`)}return B.push("}"),B.join(`
+`)}capitalizeFirst(D){return D.charAt(0).toUpperCase()+D.slice(1)}generateFieldLines(D,F){if("choices"in F&&F.choices&&Array.isArray(F.choices))return[];let B=this.generateFieldLine(D,F);return B?[B]:[]}generateFieldLine(D,F){let B="any",E=!1,C=!1;if("type"in F&&F.type){if(B=this.typeMapper.mapType(F.type).name,F.type.kind==="nested"){let Q=F.type.url?.split("#")||[];if(Q.length===2){let z=Q[0].split("/").pop()||"",Y=F.type.name;B=this.typeMapper.formatTypeName(`${z}${this.capitalizeFirst(Y)}`)}else B=this.typeMapper.formatTypeName(F.type.name)}else if(B==="Reference"&&F.reference&&Array.isArray(F.reference)){let Q=this.extractReferenceTypes(F.reference);if(Q.length>0)Q.forEach((Y)=>this.resourceTypes.add(Y)),B=`Reference<${Q.map((Y)=>`'${Y}'`).join(" | ")}>`}}if("required"in F)E=F.required;if("array"in F)C=F.array;return`${D}${E?"":"?"}: ${B}${C?"[]":""};`}extractExports(D){let F=[],B=/export\s*\{\s*([^}]+)\s*\}/g,E;while((E=B.exec(D))!==null)if(E[1]){let u=E[1].split(",").map(($)=>$.trim()).filter(Boolean);F.push(...u)}let C=[/export\s+interface\s+(\w+)/g,/export\s+type\s+(\w+)/g,/export\s+class\s+(\w+)/g,/export\s+enum\s+(\w+)/g,/export\s+const\s+(\w+)/g,/export\s+function\s+(\w+)/g];for(let u of C){let $;while(($=u.exec(D))!==null)if($[1])F.push($[1])}return[...new Set(F)]}setOutputDir(D){this.options.outputDir=D}setOptions(D){this.options={...this.options,...D}}getOptions(){return{...this.options}}async runPostGenerationHooks(){await super.runPostGenerationHooks(),await this.generateUtilitiesFile()}async generateUtilitiesFile(){if(this.resourceTypes.size===0){this.logger.warn("No resource types found, skipping utilities.ts generation");return}let D=[];D.push("/**"),D.push(" * FHIR Resource Type Utilities"),D.push(" * This file contains utility types for FHIR resources."),D.push(" * "),D.push(" * @generated This file is auto-generated. Do not edit manually."),D.push(" */"),D.push("");let F=Array.from(this.resourceTypes).sort();D.push("/**"),D.push(" * Union of all FHIR resource types in this package"),D.push(" */"),D.push("export type ResourceType =");for(let E=0;E<F.length;E++){let u=E===F.length-1?";":"";D.push(`  | '${F[E]}'${u}`)}D.push(""),D.push("/**"),D.push(" * Helper type for creating typed References"),D.push(" * @example Reference<'Patient' | 'Practitioner'> - Reference that can point to Patient or Practitioner"),D.push(" */"),D.push("export type TypedReference<T extends ResourceType> = {"),D.push("  reference?: string;"),D.push("  type?: T;"),D.push("  identifier?: any; // Simplified for utility"),D.push("  display?: string;"),D.push("};");let B=D.join(`
 `);await this.fileManager.writeFile("utilities.ts",B),this.logger.info(`Generated utilities.ts with ${this.resourceTypes.size} resource types`)}}class UF{schemas=[];options;generators=new Map;progressCallback;cache;pendingOperations=[];typeSchemaGenerator;logger;typeSchemaConfig;constructor(D={}){if(this.options={outputDir:D.outputDir||"./generated",verbose:D.verbose??!1,overwrite:D.overwrite??!0,validate:D.validate??!0,cache:D.cache??!0,typeSchemaConfig:D.typeSchemaConfig},this.typeSchemaConfig=D.typeSchemaConfig,this.logger=D.logger||JD({verbose:this.options.verbose,prefix:"API"}),this.options.cache)this.cache=new mD(this.typeSchemaConfig)}fromPackage(D,F){this.logger.debug(`Loading from FHIR package: ${D}@${F||"latest"}`);let B=this.loadFromPackage(D,F);return this.pendingOperations.push(B),this}fromFiles(...D){this.logger.debug(`Loading from ${D.length} TypeSchema files`);let F=this.loadFromFiles(D);return this.pendingOperations.push(F),this}fromSchemas(D){return this.logger.debug(`Adding ${D.length} TypeSchemas to generation`),this.schemas=[...this.schemas,...D],this}typescript(D={}){let F=`${this.options.outputDir}/types`,B=new RF({outputDir:F,moduleFormat:D.moduleFormat||"esm",generateIndex:D.generateIndex??!0,includeDocuments:D.includeDocuments??!0,namingConvention:D.namingConvention||"PascalCase",includeExtensions:D.includeExtensions??!1,includeProfiles:D.includeProfiles??!1,logger:this.logger.child("TS"),verbose:this.options.verbose,validate:!0,overwrite:this.options.overwrite});return this.generators.set("typescript",B),this.logger.debug(`Configured TypeScript generator (${D.moduleFormat||"esm"})`),this}restClient(D={}){let F=`${this.options.outputDir}/client`,B=new KF({outputDir:F,logger:this.logger.child("REST"),...D});return this.generators.set("restclient",B),this.logger.debug(`Configured REST client generator (${D.clientName||"FHIRClient"})`),this}onProgress(D){return this.progressCallback=D,this}outputTo(D){this.logger.debug(`Setting output directory: ${D}`),this.options.outputDir=D;for(let F of this.generators.values())if(F.setOutputDir)F.setOutputDir(D);return this}verbose(D=!0){return this.options.verbose=D,this}validate(D=!0){return this.options.validate=D,this}ensureTypeScriptForRestClient(){let D=this.generators.has("restclient"),F=this.generators.has("typescript");if(D&&!F)this.logger.debug("Automatically adding TypeScript generator for REST client"),this.typescript({moduleFormat:"esm",generateIndex:!0,includeDocuments:!1,namingConvention:"PascalCase"})}async generate(){this.ensureTypeScriptForRestClient();let D=performance.now(),F={success:!1,outputDir:this.options.outputDir,filesGenerated:[],errors:[],warnings:[],duration:0};this.logger.debug(`Starting generation with ${this.generators.size} generators`);try{if(this.reportProgress("Loading",0,4,"Loading TypeSchema data..."),await this.resolveSchemas(),this.logger.debug(`Resolved ${this.schemas.length} schemas`),this.reportProgress("Validating",1,4,"Validating TypeSchema documents..."),this.options.validate)this.logger.debug("Starting schema validation"),await this.validateSchemas(F),this.logger.debug("Schema validation completed");this.reportProgress("Generating",2,4,"Generating code..."),this.logger.debug(`Executing ${this.generators.size} generators`),await this.executeGenerators(F),this.reportProgress("Complete",4,4,"Generation completed successfully"),F.success=F.errors.length===0,this.logger.debug(`Generation completed: ${F.filesGenerated.length} files`)}catch(B){this.logger.error("Code generation failed",B instanceof Error?B:new Error(String(B))),F.errors.push(B instanceof Error?B.message:String(B)),F.success=!1}finally{F.duration=performance.now()-D}return F}async build(){await this.resolveSchemas();let D={};for(let[F,B]of this.generators.entries())if(B.build)D[F]=await B.build(this.schemas);return D}reset(){return this.schemas=[],this.generators.clear(),this.progressCallback=void 0,this}getSchemas(){return[...this.schemas]}getGenerators(){return Array.from(this.generators.keys())}async loadFromPackage(D,F){let B=new SD({verbose:this.options.verbose,logger:this.logger.child("Schema"),treeshake:this.typeSchemaConfig?.treeshake},this.typeSchemaConfig);this.typeSchemaGenerator=B;let E=await B.generateFromPackage(D,F);if(this.schemas=[...this.schemas,...E],this.cache)this.cache.setMany(E)}async loadFromFiles(D){if(!this.typeSchemaGenerator)this.typeSchemaGenerator=new SD({verbose:this.options.verbose,logger:this.logger.child("Schema"),treeshake:this.typeSchemaConfig?.treeshake},this.typeSchemaConfig);let B=await new M0({format:"auto",validate:this.options.validate}).parseFromFiles(D);if(this.schemas=[...this.schemas,...B],this.cache)this.cache.setMany(B)}async resolveSchemas(){if(this.pendingOperations.length>0)await Promise.all(this.pendingOperations),this.pendingOperations=[]}async validateSchemas(D){return}async executeGenerators(D){let F=this.generators.size,B=0;for(let[E,C]of this.generators.entries()){this.reportProgress("Generating",2+B/F,4,`Generating ${E}...`);try{let u=await C.generate(this.schemas);D.filesGenerated.push(...u.map(($)=>$.path||$.filename))}catch(u){D.errors.push(`${E} generator failed: ${u instanceof Error?u.message:String(u)}`)}B++}}reportProgress(D,F,B,E){if(this.progressCallback)this.progressCallback(D,F,B,E);if(this.options.verbose&&E)this.logger.debug(`[${D}] ${E}`)}}import{existsSync as pB}from"node:fs";import{readFile as mB}from"node:fs/promises";import{resolve as R6}from"node:path";var LF={outputDir:"./generated",verbose:!1,overwrite:!0,validate:!0,cache:!0,restClient:{clientName:"FHIRClient",includeValidation:!1,includeErrorHandling:!0,includeRequestInterceptors:!1,baseUrlOverride:"",enhancedSearch:!1,chainedSearchBuilder:!1,searchAutocomplete:!0,generateValueSetEnums:!0,includeUtilities:!0,generateValidators:!1,useCanonicalManager:!0,defaultTimeout:30000,defaultRetries:0,includeDocumentation:!0,generateExamples:!1},typescript:{moduleFormat:"esm",generateIndex:!0,includeDocuments:!1,namingConvention:"PascalCase",strictMode:!0,includeProfiles:!0,includeExtensions:!1,includeValueSets:!0,includeCodeSystems:!1,includeOperations:!1,fhirVersion:"R4",resourceTypes:[],maxDepth:10,profileOptions:{generateKind:"interface",includeConstraints:!0,includeDocumentation:!0,strictMode:!1,subfolder:"profiles"},generateBuilders:!1,builderOptions:{includeValidation:!0,includeFactoryMethods:!0,includeInterfaces:!0,generateNestedBuilders:!0,includeHelperMethods:!0,supportPartialBuild:!0,includeJSDoc:!0,generateFactories:!0,includeTypeGuards:!0,handleChoiceTypes:!0,generateArrayHelpers:!0},validatorOptions:{includeCardinality:!0,includeTypes:!0,includeConstraints:!0,includeInvariants:!1,validateRequired:!0,allowAdditional:!1,strictValidation:!1,collectMetrics:!1,generateAssertions:!0,generatePartialValidators:!0,optimizePerformance:!0,includeJSDoc:!0,generateCompositeValidators:!0},guardOptions:{includeRuntimeValidation:!0,includeErrorMessages:!0,treeShakeable:!0,targetTSVersion:"5.0",strictGuards:!1,includeNullChecks:!0,verbose:!1}},typeSchema:{enablePersistence:!0,cacheDir:".typeschema-cache",maxAge:86400000,validateCached:!0,forceRegenerate:!1,shareCache:!0,cacheKeyPrefix:"",treeshake:[],singleFile:!1,profiles:{autoDetect:!0}},packages:[],files:[],$schema:""},NF=["atomic-codegen.config.ts","atomic-codegen.config.js","atomic-codegen.config.json",".atomic-codegenrc","atomic-codegen.json",".atomic-codegen.json","codegen.config.json","codegen.json"];class U6{validate(D){let F={valid:!0,errors:[],warnings:[]};if(!D||typeof D!=="object")return F.valid=!1,F.errors.push({path:"root",message:"Configuration must be an object",value:D}),F;let B=D;if(B.outputDir!==void 0&&typeof B.outputDir!=="string")F.errors.push({path:"outputDir",message:"outputDir must be a string",value:B.outputDir});let E=["verbose","overwrite","validate","cache"];for(let C of E)if(B[C]!==void 0&&typeof B[C]!=="boolean")F.errors.push({path:C,message:`${C} must be a boolean`,value:B[C]});if(B.typescript!==void 0){let C=this.validateTypeScriptConfig(B.typescript);F.errors.push(...C)}if(B.typeSchema!==void 0){let C=this.validateTypeSchemaConfig(B.typeSchema);F.errors.push(...C)}if(B.restClient!==void 0){let C=this.validateRestClientConfig(B.restClient);F.errors.push(...C)}if(B.packages!==void 0)if(!Array.isArray(B.packages))F.errors.push({path:"packages",message:"packages must be an array",value:B.packages});else B.packages.forEach((C,u)=>{if(typeof C!=="string")F.errors.push({path:`packages[${u}]`,message:"package name must be a string",value:C})});if(B.files!==void 0)if(!Array.isArray(B.files))F.errors.push({path:"files",message:"files must be an array",value:B.files});else B.files.forEach((C,u)=>{if(typeof C!=="string")F.errors.push({path:`files[${u}]`,message:"file path must be a string",value:C})});if(F.valid=F.errors.length===0,F.valid)F.config=B;return F}validateTypeScriptConfig(D){let F=[];if(typeof D!=="object"||D===null)return F.push({path:"typescript",message:"typescript config must be an object",value:D}),F;let B=D;if(B.moduleFormat!==void 0){if(!["esm","cjs"].includes(B.moduleFormat))F.push({path:"typescript.moduleFormat",message:'moduleFormat must be "esm" or "cjs"',value:B.moduleFormat})}if(B.namingConvention!==void 0){if(!["PascalCase","camelCase"].includes(B.namingConvention))F.push({path:"typescript.namingConvention",message:'namingConvention must be "PascalCase" or "camelCase"',value:B.namingConvention})}let E=["generateIndex","includeDocuments","strictMode","includeProfiles","includeExtensions"];for(let C of E)if(B[C]!==void 0&&typeof B[C]!=="boolean")F.push({path:`typescript.${C}`,message:`${C} must be a boolean`,value:B[C]});if(B.validatorOptions!==void 0){let C=this.validateValidatorOptions(B.validatorOptions);F.push(...C)}if(B.guardOptions!==void 0){let C=this.validateGuardOptions(B.guardOptions);F.push(...C)}if(B.profileOptions!==void 0){let C=this.validateProfileOptions(B.profileOptions);F.push(...C)}return F}validateValidatorOptions(D){let F=[];if(typeof D!=="object"||D===null)return F.push({path:"typescript.validatorOptions",message:"validatorOptions must be an object",value:D}),F;let B=D,E=["includeCardinality","includeTypes","includeConstraints","includeInvariants","validateRequired","allowAdditional","strictValidation","collectMetrics","generateAssertions","generatePartialValidators","optimizePerformance","includeJSDoc","generateCompositeValidators"];for(let C of E)if(B[C]!==void 0&&typeof B[C]!=="boolean")F.push({path:`typescript.validatorOptions.${C}`,message:`${C} must be a boolean`,value:B[C]});return F}validateRestClientConfig(D){let F=[];if(typeof D!=="object"||D===null)return F.push({path:"restClient",message:"restClient config must be an object",value:D}),F;let B=D;if(B.clientName!==void 0&&typeof B.clientName!=="string")F.push({path:"restClient.clientName",message:"clientName must be a string",value:B.clientName});if(B.baseUrlOverride!==void 0&&typeof B.baseUrlOverride!=="string")F.push({path:"restClient.baseUrlOverride",message:"baseUrlOverride must be a string",value:B.baseUrlOverride});if(B.defaultTimeout!==void 0){if(typeof B.defaultTimeout!=="number"||B.defaultTimeout<=0)F.push({path:"restClient.defaultTimeout",message:"defaultTimeout must be a positive number",value:B.defaultTimeout})}if(B.defaultRetries!==void 0){if(typeof B.defaultRetries!=="number"||B.defaultRetries<0)F.push({path:"restClient.defaultRetries",message:"defaultRetries must be a non-negative number",value:B.defaultRetries})}let E=["includeValidation","includeErrorHandling","includeRequestInterceptors","enhancedSearch","chainedSearchBuilder","searchAutocomplete","generateValueSetEnums","includeUtilities","generateValidators","useCanonicalManager","includeDocumentation","generateExamples"];for(let C of E)if(B[C]!==void 0&&typeof B[C]!=="boolean")F.push({path:`restClient.${C}`,message:`${C} must be a boolean`,value:B[C]});return F}validateGuardOptions(D){let F=[];if(typeof D!=="object"||D===null)return F.push({path:"typescript.guardOptions",message:"guardOptions must be an object",value:D}),F;let B=D;if(B.targetTSVersion!==void 0){if(!["3.8","4.0","4.5","5.0"].includes(B.targetTSVersion))F.push({path:"typescript.guardOptions.targetTSVersion",message:'targetTSVersion must be one of: "3.8", "4.0", "4.5", "5.0"',value:B.targetTSVersion})}let E=["includeRuntimeValidation","includeErrorMessages","treeShakeable","strictGuards","includeNullChecks","verbose"];for(let C of E)if(B[C]!==void 0&&typeof B[C]!=="boolean")F.push({path:`typescript.guardOptions.${C}`,message:`${C} must be a boolean`,value:B[C]});return F}validateProfileOptions(D){let F=[];if(typeof D!=="object"||D===null)return F.push({path:"typescript.profileOptions",message:"profileOptions must be an object",value:D}),F;let B=D;if(B.generateKind!==void 0){if(!["interface","type","both"].includes(B.generateKind))F.push({path:"typescript.profileOptions.generateKind",message:'generateKind must be "interface", "type", or "both"',value:B.generateKind})}if(B.subfolder!==void 0&&typeof B.subfolder!=="string")F.push({path:"typescript.profileOptions.subfolder",message:"subfolder must be a string",value:B.subfolder});let E=["includeConstraints","includeDocumentation","strictMode"];for(let C of E)if(B[C]!==void 0&&typeof B[C]!=="boolean")F.push({path:`typescript.profileOptions.${C}`,message:`${C} must be a boolean`,value:B[C]});return F}validateTypeSchemaConfig(D){let F=[];if(typeof D!=="object"||D===null)return F.push({path:"typeSchema",message:"typeSchema config must be an object",value:D}),F;let B=D,E=["enablePersistence","validateCached","forceRegenerate","shareCache"];for(let u of E)if(B[u]!==void 0&&typeof B[u]!=="boolean")F.push({path:`typeSchema.${u}`,message:`${u} must be a boolean`,value:B[u]});let C=["cacheDir","cacheKeyPrefix"];for(let u of C)if(B[u]!==void 0&&typeof B[u]!=="string")F.push({path:`typeSchema.${u}`,message:`${u} must be a string`,value:B[u]});if(B.maxAge!==void 0){if(typeof B.maxAge!=="number"||B.maxAge<=0)F.push({path:"typeSchema.maxAge",message:"maxAge must be a positive number",value:B.maxAge})}if(B.profiles!==void 0)if(typeof B.profiles!=="object"||B.profiles===null)F.push({path:"typeSchema.profiles",message:"profiles must be an object",value:B.profiles});else{let u=B.profiles;if(u.autoDetect!==void 0&&typeof u.autoDetect!=="boolean")F.push({path:"typeSchema.profiles.autoDetect",message:"autoDetect must be a boolean",value:u.autoDetect})}return F}}class L6{validator=new U6;async autoload(D=process.cwd()){let F=await this.findConfigFile(D);if(F)return this.loadFromFile(F);return{...LF}}async loadFromFile(D){try{let F;if(D.endsWith(".ts")||D.endsWith(".js")){let C=await import(R6(D));F=C.default||C}else{let E=await mB(D,"utf-8");F=JSON.parse(E)}let B=this.validator.validate(F);if(!B.valid){let E=B.errors.map((C)=>`${C.path}: ${C.message}`).join(`
 `);throw new Error(`Configuration validation failed:
 ${E}`)}return this.mergeWithDefaults(B.config)}catch(F){if(F instanceof Error)throw new Error(`Failed to load config from ${D}: ${F.message}`);throw F}}async findConfigFile(D){for(let F of NF){let B=R6(D,F);if(pB(B))return B}return null}mergeWithDefaults(D){let F={...LF,...D,typescript:{...LF.typescript,...D.typescript}};if(D.restClient!==void 0)F.restClient={...LF.restClient,...D.restClient};else delete F.restClient;return F}}var lB=new L6;async function jF(D){return lB.autoload(D)}var N6={command:"generate",describe:"Generate code based on configuration file settings",builder:(D)=>D.option("verbose",{alias:"v",type:"boolean",default:!1,description:"Enable verbose output"}).example("$0 generate","Generate code using settings from config file").example("$0 generate --verbose","Generate with verbose output"),handler:async(D)=>{if(D._.length>1){let $=D._.slice(1).join(" ");RD(`Invalid syntax: 'atomic-codegen generate ${$}'

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@atomic-ehr/codegen",
-  "version": "0.0.1-canary.20250822153920.e501dd0",
+  "version": "0.0.1-canary.20250826204510.8c2fcc0",
   "description": "Code generation tools for FHIR resources and TypeSchema definitions",
   "keywords": [
     "fhir",
@@ -49,7 +49,7 @@
     "quality": "bun run typecheck && bun run lint && bun run test:unit",
     "cli": "bun run src/cli/index.ts",
     "codegen": "bun run src/cli/index.ts",
-    "codegen:all": "bun run src/cli/index.ts generate typescript"
+    "codegen:all": "bun run src/cli/index.ts generate"
   },
   "repository": {
     "type": "git",