@atomic-chat/core 0.19.1 → 0.20.6

package/dist/engines/versions.js.map

@@ -1 +1 @@
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package/dist/integrations/catalog.d.ts

@@ -46,7 +46,9 @@ export declare const CONFLICTING_PROVIDER_ENV: readonly string[];
 /**
  * Environment the spawned agent needs on top of its config file. Five agents are configured purely
  * through environment variables that `configure_*` persists to the user's shell rc — that file is
- * not live in a process we are about to spawn, so the same variables are set on the child.
+ * not live in a process we are about to spawn, so the same variables are set on the child. Codex's
+ * profile names the variable its key is read from (`env_key`) but never holds the key, so the key
+ * goes on the child — only when there is one, as the profile names the variable only then.
  */
 export declare function childEnv(agent: Agent, apiUrl: string, model: string, apiKey: string): Record<string, string>;
 /** Poolside wants the root without `/v1`; it appends its own paths. */

package/dist/integrations/catalog.js

@@ -53,7 +53,9 @@ export const AGENTS = [
         requiresModel: true,
         endpointWithPrefix: true,
         docsUrl: 'https://github.com/openai/codex',
-        runArgs: [],
+        // The model and provider live in our own profile file (`configure/codex.ts`), which Codex reads
+        // only when asked to; the shared `config.toml` is the user's.
+        runArgs: ['--profile', 'atomic-chat'],
         runMode: 'terminal',
     },
     {
@@ -273,7 +275,9 @@ export const CONFLICTING_PROVIDER_ENV = [
 /**
  * Environment the spawned agent needs on top of its config file. Five agents are configured purely
  * through environment variables that `configure_*` persists to the user's shell rc — that file is
- * not live in a process we are about to spawn, so the same variables are set on the child.
+ * not live in a process we are about to spawn, so the same variables are set on the child. Codex's
+ * profile names the variable its key is read from (`env_key`) but never holds the key, so the key
+ * goes on the child — only when there is one, as the profile names the variable only then.
  */
 export function childEnv(agent, apiUrl, model, apiKey) {
     const key = apiKey || 'atomic';
@@ -306,6 +310,8 @@ export function childEnv(agent, apiUrl, model, apiKey) {
             };
         case 'muse':
             return { META_API_KEY: key };
+        case 'codex':
+            return apiKey ? { ATOMIC_CHAT_API_KEY: apiKey } : {};
         default:
             return {};
     }

package/dist/integrations/catalog.js.map

@@ -1 +1 @@
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package/dist/integrations/config-io.d.ts

@@ -10,6 +10,14 @@
  *    diverge on any file with more than one key.
  *  - `serde_yaml` 0.9 does not indent sequence items under their key.
  *  - The managed shell-rc block has an exact shape, including where its blank lines fall.
+ *
+ * Codex is the exception to "rewrite the user's file": it gets a profile file of its own and only
+ * ever *repairs* the shared `config.toml` (`configure/codex-repair.ts`). A repair must never turn an
+ * unreadable file into an empty one, so it reads through `readStrict` ("not found" is the only
+ * absence), backs up through `createNew` (never over an earlier backup) and writes back with the
+ * file's own `permissions` — operations the lenient writers above do not need. Its writes also go
+ * through a symbolic link (`linkTarget`) rather than over it: dotfile managers link
+ * `~/.codex/config.toml` into their repository, and replacing the link would detach it.
  */
 export declare const ATOMIC_MANAGED_BEGIN = "# >>> Atomic Chat (managed) >>>";
 export declare const ATOMIC_MANAGED_END = "# <<< Atomic Chat (managed) <<<";
@@ -20,10 +28,37 @@ export declare const ATOMIC_MANAGED_END = "# <<< Atomic Chat (managed) <<<";
 export interface ConfigFs {
     /** Absolute path of the home directory. */
     home: string;
+    /** The file's text, or `undefined` when it cannot be read for any reason. */
     read: (relative: string) => Promise<string | undefined>;
+    /**
+     * `read` for a file whose loss would be worse than a refusal: only "not found" is `undefined`.
+     * Any other failure throws, and so does content that is not UTF-8 — decoding it lossily and
+     * writing it back would corrupt the user's file. A byte-order mark is kept, so the text encodes
+     * back to the exact bytes read.
+     */
+    readStrict: (relative: string) => Promise<string | undefined>;
+    /**
+     * Atomic replace (temp file + rename). A `mode` is applied exactly, whatever the umask or a stale
+     * temp file would have left.
+     */
     write: (relative: string, contents: string, options?: {
         mode?: number;
     }) => Promise<void>;
+    /**
+     * Create a file only if nothing is at that path yet; resolves `false`, touching nothing, when
+     * something is. A failure after the file was created removes it again.
+     */
+    createNew: (relative: string, contents: string, options?: {
+        mode?: number;
+    }) => Promise<boolean>;
+    /** Permission bits (`mode & 0o777`) of an existing file, `undefined` when there is none. */
+    permissions: (relative: string) => Promise<number | undefined>;
+    /**
+     * Where a write to this path should land so a symbolic link stays a link: the fully resolved real
+     * path when the path itself is a link, else the path unchanged (whether or not it exists). A link
+     * to nothing rejects with `ENOENT`.
+     */
+    linkTarget: (relative: string) => Promise<string>;
     mkdirp: (relative: string) => Promise<void>;
     exists: (relative: string) => Promise<boolean>;
     remove: (relative: string) => Promise<void>;
@@ -50,9 +85,10 @@ export declare function stripJsonComments(text: string): string;
 export declare function canonicalYaml(value: unknown): string;
 export declare function parseYaml(text: string, path: string): unknown;
 /**
- * Remove every `# >>> Atomic Chat (managed) >>> … # <<< Atomic Chat (managed) <<<` region. Some
- * writers (Codex) keep two, so this strips all of them, and — like the Rust original — it does not
- * consume the newline after the closing marker, which is why blank-line residue is expected.
+ * Remove every `# >>> Atomic Chat (managed) >>> … # <<< Atomic Chat (managed) <<<` region. It strips
+ * all of them, and — like the Rust original — it does not consume the newline after the closing
+ * marker, which is why blank-line residue is expected. The DeepSeek Harness writer uses it; Codex's
+ * legacy regions are removed by `configure/codex-repair.ts`, which only removes what it recognises.
  */
 export declare function stripAtomicManagedBlock(content: string): string;
 /** Which shell rc file the env-var agents write to, from `$SHELL` and the platform. */
@@ -78,7 +114,12 @@ export interface EnvEntry {
 export declare function renderMarkedEnvBlock(existing: string, marker: string, prefix: string, entries: EnvEntry[]): string;
 /** Write the block into the right rc file for this shell. */
 export declare function writeMarkedEnvToShell(fs: ConfigFs, shell: string | undefined, platform: NodeJS.Platform, marker: string, prefix: string, entries: EnvEntry[]): Promise<void>;
-/** TOML basic string escaping: only `\` and `"`, as the Rust writer does. */
+/**
+ * The inside of a TOML basic string. Everything TOML forbids raw is escaped — `\`, `"`, and every
+ * control character (the five with a short form use it, the rest and DEL become `\uXXXX`, upper-case
+ * hex) — so any value yields a file Codex can parse. The desktop writer escapes the same way, which is
+ * what keeps the two sides' profile files byte-identical.
+ */
 export declare function tomlBasicStringEscape(value: string): string;
 /** The key an agent should use when the user configured none. Not uniform across agents. */
 export declare function keyOr(apiKey: string, fallback: string): string;

package/dist/integrations/config-io.js

@@ -10,30 +10,90 @@
  *    diverge on any file with more than one key.
  *  - `serde_yaml` 0.9 does not indent sequence items under their key.
  *  - The managed shell-rc block has an exact shape, including where its blank lines fall.
+ *
+ * Codex is the exception to "rewrite the user's file": it gets a profile file of its own and only
+ * ever *repairs* the shared `config.toml` (`configure/codex-repair.ts`). A repair must never turn an
+ * unreadable file into an empty one, so it reads through `readStrict` ("not found" is the only
+ * absence), backs up through `createNew` (never over an earlier backup) and writes back with the
+ * file's own `permissions` — operations the lenient writers above do not need. Its writes also go
+ * through a symbolic link (`linkTarget`) rather than over it: dotfile managers link
+ * `~/.codex/config.toml` into their repository, and replacing the link would detach it.
  */
-import { mkdir, readFile, rename, rm, stat, writeFile } from 'node:fs/promises';
+import { chmod, lstat, mkdir, readFile, realpath, rename, rm, stat, writeFile } from 'node:fs/promises';
 import { dirname, isAbsolute, join, resolve } from 'node:path';
 import { stringify as yamlStringify, parse as yamlParse } from 'yaml';
 import { AtomicCoreError } from '../contracts/index.js';
 export const ATOMIC_MANAGED_BEGIN = '# >>> Atomic Chat (managed) >>>';
 export const ATOMIC_MANAGED_END = '# <<< Atomic Chat (managed) <<<';
+const isNotFound = (e) => e.code === 'ENOENT';
 export function nodeConfigFs(home) {
     const abs = (relative) => (isAbsolute(relative) ? relative : join(home, ...relative.split('/')));
     return {
         home,
         absolute: abs,
         read: (relative) => readFile(abs(relative), 'utf8').then((t) => t, () => undefined),
+        readStrict: async (relative) => {
+            let bytes;
+            try {
+                bytes = await readFile(abs(relative));
+            }
+            catch (e) {
+                if (isNotFound(e))
+                    return undefined;
+                throw e;
+            }
+            return new TextDecoder('utf-8', { fatal: true, ignoreBOM: true }).decode(bytes);
+        },
         write: async (relative, contents, options = {}) => {
             const path = abs(relative);
             await mkdir(dirname(path), { recursive: true });
             // Write beside the target and rename over it, so a crash cannot truncate a user's config.
             const tmp = `${path}.atomic-tmp`;
             await writeFile(tmp, contents, options.mode !== undefined ? { mode: options.mode } : {});
+            // `writeFile` applies `mode` only to a file it creates, and only through the umask.
+            if (options.mode !== undefined)
+                await chmod(tmp, options.mode);
             await rename(tmp, path).catch(async (e) => {
                 await rm(tmp, { force: true }).catch(() => { });
                 throw e;
             });
         },
+        createNew: async (relative, contents, options = {}) => {
+            const path = abs(relative);
+            await mkdir(dirname(path), { recursive: true });
+            try {
+                await writeFile(path, contents, {
+                    flag: 'wx',
+                    ...(options.mode !== undefined ? { mode: options.mode } : {}),
+                });
+                return true;
+            }
+            catch (e) {
+                if (e.code === 'EEXIST')
+                    return false;
+                // `wx` failed after creating the file (a full disk): leave no half-written file behind.
+                await rm(path, { force: true }).catch(() => { });
+                throw e;
+            }
+        },
+        permissions: (relative) => stat(abs(relative)).then((s) => s.mode & 0o777, (e) => {
+            if (isNotFound(e))
+                return undefined;
+            throw e;
+        }),
+        linkTarget: async (relative) => {
+            const path = abs(relative);
+            let link;
+            try {
+                link = (await lstat(path)).isSymbolicLink();
+            }
+            catch (e) {
+                if (isNotFound(e))
+                    return path;
+                throw e;
+            }
+            return link ? realpath(path) : path;
+        },
         mkdirp: (relative) => mkdir(abs(relative), { recursive: true }).then(() => undefined),
         exists: (relative) => stat(abs(relative)).then(() => true, () => false),
         remove: (relative) => rm(abs(relative), { force: true }),
@@ -151,9 +211,10 @@ export function parseYaml(text, path) {
 }
 // ── managed blocks ──────────────────────────────────────────────────────────────────────────────
 /**
- * Remove every `# >>> Atomic Chat (managed) >>> … # <<< Atomic Chat (managed) <<<` region. Some
- * writers (Codex) keep two, so this strips all of them, and — like the Rust original — it does not
- * consume the newline after the closing marker, which is why blank-line residue is expected.
+ * Remove every `# >>> Atomic Chat (managed) >>> … # <<< Atomic Chat (managed) <<<` region. It strips
+ * all of them, and — like the Rust original — it does not consume the newline after the closing
+ * marker, which is why blank-line residue is expected. The DeepSeek Harness writer uses it; Codex's
+ * legacy regions are removed by `configure/codex-repair.ts`, which only removes what it recognises.
  */
 export function stripAtomicManagedBlock(content) {
     let result = content;
@@ -210,10 +271,34 @@ export async function writeMarkedEnvToShell(fs, shell, platform, marker, prefix,
     await fs.write(rc, renderMarkedEnvBlock(existing, marker, prefix, entries));
 }
 // ── small shared helpers ────────────────────────────────────────────────────────────────────────
-/** TOML basic string escaping: only `\` and `"`, as the Rust writer does. */
+/**
+ * The inside of a TOML basic string. Everything TOML forbids raw is escaped — `\`, `"`, and every
+ * control character (the five with a short form use it, the rest and DEL become `\uXXXX`, upper-case
+ * hex) — so any value yields a file Codex can parse. The desktop writer escapes the same way, which is
+ * what keeps the two sides' profile files byte-identical.
+ */
 export function tomlBasicStringEscape(value) {
-    return value.replace(/\\/g, '\\\\').replace(/"/g, '\\"');
+    let out = '';
+    for (const char of value) {
+        const short = TOML_SHORT_ESCAPES[char];
+        if (short !== undefined) {
+            out += short;
+            continue;
+        }
+        const code = char.codePointAt(0);
+        out += code < 0x20 || code === 0x7f ? `\\u${code.toString(16).toUpperCase().padStart(4, '0')}` : char;
+    }
+    return out;
 }
+const TOML_SHORT_ESCAPES = {
+    '\\': '\\\\',
+    '"': '\\"',
+    '\b': '\\b',
+    '\t': '\\t',
+    '\n': '\\n',
+    '\f': '\\f',
+    '\r': '\\r',
+};
 /** The key an agent should use when the user configured none. Not uniform across agents. */
 export function keyOr(apiKey, fallback) {
     return apiKey && apiKey.length > 0 ? apiKey : fallback;

package/dist/integrations/config-io.js.map

@@ -1 +1 @@
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package/dist/integrations/configure/codex-repair.d.ts

@@ -0,0 +1,75 @@
+/**
+ * Undo what earlier Atomic Chat versions wrote into Codex's shared `config.toml`.
+ *
+ * Until the profile file (`codex.ts`), the Codex writer edited `<codex_home>/config.toml` itself,
+ * inside `# >>> Atomic Chat (managed) >>>` … `# <<< Atomic Chat (managed) <<<` regions. V1 (the first
+ * Launch page) appended one region: `[model_providers.atomic]` and `[profiles.atomic]`. V2 kept two:
+ * root `model` + `model_provider = "atomic"` at the very top, `[model_providers.atomic]` at the end.
+ * V2 is the incident: a user with a root `model` of their own got a duplicate key, and Codex — the CLI
+ * and the ChatGPT desktop app, which share the file — refused to start until it was fixed by hand.
+ *
+ * Deleting text from a file that is not ours is safe only for text we can prove is ours, so this is
+ * strict where it could be clever. A marker counts only as a whole line; the regions must pair up;
+ * each must parse on its own and hold nothing but keys some version wrote, with the values it wrote;
+ * the file without them must still parse; and it must not have changed since it was read. Anything
+ * else is a conflict: the file stays byte for byte as it was, and the message names it and says which
+ * lines to remove by hand. A repair keeps a backup of the original (never over an earlier one) and
+ * writes atomically with the file's own permission bits. A `config.toml` that is a symbolic link (a
+ * dotfile manager's) is written through: the temp file and the rename happen beside the real file,
+ * which gets the new text while the link stays a link; the backup still goes next to the link.
+ *
+ * The algorithm is shared with the desktop app, which runs it at startup and on disconnect; both
+ * sides must reach the same decision on the same bytes
+ * (ADR 2026-10-27-codex-runs-on-a-profile-of-its-own).
+ */
+import type { ConfigFs } from '../config-io.js';
+/** What the removed regions said, for a caller that wants to carry the setup over to the profile. */
+export interface CodexLegacySettings {
+    model?: string;
+    baseUrl?: string;
+    /** The provider named `ATOMIC_CHAT_API_KEY` as its key variable. */
+    keyed: boolean;
+}
+export type CodexRepairResult = 
+/** No `config.toml`, or nothing of ours in it. Nothing was written. */
+{
+    kind: 'clean';
+} | {
+    kind: 'repaired';
+    backupPath: string;
+    legacy: CodexLegacySettings;
+}
+/** Something we cannot prove is ours. Nothing was written; `reason` is the user-facing message. */
+ | {
+    kind: 'conflict';
+    reason: string;
+};
+/** The decision on one file's text, before any I/O: what to write instead, or why not. */
+export type CodexRepairPlan = {
+    kind: 'clean';
+} | {
+    kind: 'conflict';
+    reason: string;
+} | {
+    kind: 'repair';
+    text: string;
+    legacy: CodexLegacySettings;
+};
+/**
+ * The settings in one region when it holds exactly what some Atomic Chat version wrote, else
+ * `undefined`. Inline tables and dotted keys mean the same to Codex, so they are accepted too.
+ */
+export declare function recogniseLegacyRegion(doc: Record<string, unknown>): CodexLegacySettings | undefined;
+/**
+ * Steps 2–6 of the repair on a file's text: find and pair the marker lines, recognise every region,
+ * remove them, and check what is left. Pure, so every rule is testable on a string.
+ */
+export declare function planCodexConfigRepair(original: string, path: string): CodexRepairPlan;
+/** The first free backup name: `config.toml.atomic-chat-backup`, then `-2`, `-3`, … */
+export declare function codexBackupPath(path: string, attempt: number): string;
+/**
+ * Remove every legacy Atomic Chat region from `<dir>/config.toml`. Returns a conflict rather than
+ * throwing for a file it will not touch; throws only when the file could not be read, backed up or
+ * written. Either way a file that was not repaired is exactly as it was.
+ */
+export declare function repairLegacyCodexConfig(fs: ConfigFs, dir: string, platform: NodeJS.Platform): Promise<CodexRepairResult>;