@atomic-chat/core 0.19.0 → 0.20.5

package/dist/integrations/catalog.js.map

@@ -1 +1 @@
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package/dist/integrations/config-io.d.ts

@@ -10,6 +10,14 @@
  *    diverge on any file with more than one key.
  *  - `serde_yaml` 0.9 does not indent sequence items under their key.
  *  - The managed shell-rc block has an exact shape, including where its blank lines fall.
+ *
+ * Codex is the exception to "rewrite the user's file": it gets a profile file of its own and only
+ * ever *repairs* the shared `config.toml` (`configure/codex-repair.ts`). A repair must never turn an
+ * unreadable file into an empty one, so it reads through `readStrict` ("not found" is the only
+ * absence), backs up through `createNew` (never over an earlier backup) and writes back with the
+ * file's own `permissions` — operations the lenient writers above do not need. Its writes also go
+ * through a symbolic link (`linkTarget`) rather than over it: dotfile managers link
+ * `~/.codex/config.toml` into their repository, and replacing the link would detach it.
  */
 export declare const ATOMIC_MANAGED_BEGIN = "# >>> Atomic Chat (managed) >>>";
 export declare const ATOMIC_MANAGED_END = "# <<< Atomic Chat (managed) <<<";
@@ -20,10 +28,37 @@ export declare const ATOMIC_MANAGED_END = "# <<< Atomic Chat (managed) <<<";
 export interface ConfigFs {
     /** Absolute path of the home directory. */
     home: string;
+    /** The file's text, or `undefined` when it cannot be read for any reason. */
     read: (relative: string) => Promise<string | undefined>;
+    /**
+     * `read` for a file whose loss would be worse than a refusal: only "not found" is `undefined`.
+     * Any other failure throws, and so does content that is not UTF-8 — decoding it lossily and
+     * writing it back would corrupt the user's file. A byte-order mark is kept, so the text encodes
+     * back to the exact bytes read.
+     */
+    readStrict: (relative: string) => Promise<string | undefined>;
+    /**
+     * Atomic replace (temp file + rename). A `mode` is applied exactly, whatever the umask or a stale
+     * temp file would have left.
+     */
     write: (relative: string, contents: string, options?: {
         mode?: number;
     }) => Promise<void>;
+    /**
+     * Create a file only if nothing is at that path yet; resolves `false`, touching nothing, when
+     * something is. A failure after the file was created removes it again.
+     */
+    createNew: (relative: string, contents: string, options?: {
+        mode?: number;
+    }) => Promise<boolean>;
+    /** Permission bits (`mode & 0o777`) of an existing file, `undefined` when there is none. */
+    permissions: (relative: string) => Promise<number | undefined>;
+    /**
+     * Where a write to this path should land so a symbolic link stays a link: the fully resolved real
+     * path when the path itself is a link, else the path unchanged (whether or not it exists). A link
+     * to nothing rejects with `ENOENT`.
+     */
+    linkTarget: (relative: string) => Promise<string>;
     mkdirp: (relative: string) => Promise<void>;
     exists: (relative: string) => Promise<boolean>;
     remove: (relative: string) => Promise<void>;
@@ -50,9 +85,10 @@ export declare function stripJsonComments(text: string): string;
 export declare function canonicalYaml(value: unknown): string;
 export declare function parseYaml(text: string, path: string): unknown;
 /**
- * Remove every `# >>> Atomic Chat (managed) >>> … # <<< Atomic Chat (managed) <<<` region. Some
- * writers (Codex) keep two, so this strips all of them, and — like the Rust original — it does not
- * consume the newline after the closing marker, which is why blank-line residue is expected.
+ * Remove every `# >>> Atomic Chat (managed) >>> … # <<< Atomic Chat (managed) <<<` region. It strips
+ * all of them, and — like the Rust original — it does not consume the newline after the closing
+ * marker, which is why blank-line residue is expected. The DeepSeek Harness writer uses it; Codex's
+ * legacy regions are removed by `configure/codex-repair.ts`, which only removes what it recognises.
  */
 export declare function stripAtomicManagedBlock(content: string): string;
 /** Which shell rc file the env-var agents write to, from `$SHELL` and the platform. */
@@ -78,7 +114,12 @@ export interface EnvEntry {
 export declare function renderMarkedEnvBlock(existing: string, marker: string, prefix: string, entries: EnvEntry[]): string;
 /** Write the block into the right rc file for this shell. */
 export declare function writeMarkedEnvToShell(fs: ConfigFs, shell: string | undefined, platform: NodeJS.Platform, marker: string, prefix: string, entries: EnvEntry[]): Promise<void>;
-/** TOML basic string escaping: only `\` and `"`, as the Rust writer does. */
+/**
+ * The inside of a TOML basic string. Everything TOML forbids raw is escaped — `\`, `"`, and every
+ * control character (the five with a short form use it, the rest and DEL become `\uXXXX`, upper-case
+ * hex) — so any value yields a file Codex can parse. The desktop writer escapes the same way, which is
+ * what keeps the two sides' profile files byte-identical.
+ */
 export declare function tomlBasicStringEscape(value: string): string;
 /** The key an agent should use when the user configured none. Not uniform across agents. */
 export declare function keyOr(apiKey: string, fallback: string): string;

package/dist/integrations/config-io.js

@@ -10,30 +10,90 @@
  *    diverge on any file with more than one key.
  *  - `serde_yaml` 0.9 does not indent sequence items under their key.
  *  - The managed shell-rc block has an exact shape, including where its blank lines fall.
+ *
+ * Codex is the exception to "rewrite the user's file": it gets a profile file of its own and only
+ * ever *repairs* the shared `config.toml` (`configure/codex-repair.ts`). A repair must never turn an
+ * unreadable file into an empty one, so it reads through `readStrict` ("not found" is the only
+ * absence), backs up through `createNew` (never over an earlier backup) and writes back with the
+ * file's own `permissions` — operations the lenient writers above do not need. Its writes also go
+ * through a symbolic link (`linkTarget`) rather than over it: dotfile managers link
+ * `~/.codex/config.toml` into their repository, and replacing the link would detach it.
  */
-import { mkdir, readFile, rename, rm, stat, writeFile } from 'node:fs/promises';
+import { chmod, lstat, mkdir, readFile, realpath, rename, rm, stat, writeFile } from 'node:fs/promises';
 import { dirname, isAbsolute, join, resolve } from 'node:path';
 import { stringify as yamlStringify, parse as yamlParse } from 'yaml';
 import { AtomicCoreError } from '../contracts/index.js';
 export const ATOMIC_MANAGED_BEGIN = '# >>> Atomic Chat (managed) >>>';
 export const ATOMIC_MANAGED_END = '# <<< Atomic Chat (managed) <<<';
+const isNotFound = (e) => e.code === 'ENOENT';
 export function nodeConfigFs(home) {
     const abs = (relative) => (isAbsolute(relative) ? relative : join(home, ...relative.split('/')));
     return {
         home,
         absolute: abs,
         read: (relative) => readFile(abs(relative), 'utf8').then((t) => t, () => undefined),
+        readStrict: async (relative) => {
+            let bytes;
+            try {
+                bytes = await readFile(abs(relative));
+            }
+            catch (e) {
+                if (isNotFound(e))
+                    return undefined;
+                throw e;
+            }
+            return new TextDecoder('utf-8', { fatal: true, ignoreBOM: true }).decode(bytes);
+        },
         write: async (relative, contents, options = {}) => {
             const path = abs(relative);
             await mkdir(dirname(path), { recursive: true });
             // Write beside the target and rename over it, so a crash cannot truncate a user's config.
             const tmp = `${path}.atomic-tmp`;
             await writeFile(tmp, contents, options.mode !== undefined ? { mode: options.mode } : {});
+            // `writeFile` applies `mode` only to a file it creates, and only through the umask.
+            if (options.mode !== undefined)
+                await chmod(tmp, options.mode);
             await rename(tmp, path).catch(async (e) => {
                 await rm(tmp, { force: true }).catch(() => { });
                 throw e;
             });
         },
+        createNew: async (relative, contents, options = {}) => {
+            const path = abs(relative);
+            await mkdir(dirname(path), { recursive: true });
+            try {
+                await writeFile(path, contents, {
+                    flag: 'wx',
+                    ...(options.mode !== undefined ? { mode: options.mode } : {}),
+                });
+                return true;
+            }
+            catch (e) {
+                if (e.code === 'EEXIST')
+                    return false;
+                // `wx` failed after creating the file (a full disk): leave no half-written file behind.
+                await rm(path, { force: true }).catch(() => { });
+                throw e;
+            }
+        },
+        permissions: (relative) => stat(abs(relative)).then((s) => s.mode & 0o777, (e) => {
+            if (isNotFound(e))
+                return undefined;
+            throw e;
+        }),
+        linkTarget: async (relative) => {
+            const path = abs(relative);
+            let link;
+            try {
+                link = (await lstat(path)).isSymbolicLink();
+            }
+            catch (e) {
+                if (isNotFound(e))
+                    return path;
+                throw e;
+            }
+            return link ? realpath(path) : path;
+        },
         mkdirp: (relative) => mkdir(abs(relative), { recursive: true }).then(() => undefined),
         exists: (relative) => stat(abs(relative)).then(() => true, () => false),
         remove: (relative) => rm(abs(relative), { force: true }),
@@ -151,9 +211,10 @@ export function parseYaml(text, path) {
 }
 // ── managed blocks ──────────────────────────────────────────────────────────────────────────────
 /**
- * Remove every `# >>> Atomic Chat (managed) >>> … # <<< Atomic Chat (managed) <<<` region. Some
- * writers (Codex) keep two, so this strips all of them, and — like the Rust original — it does not
- * consume the newline after the closing marker, which is why blank-line residue is expected.
+ * Remove every `# >>> Atomic Chat (managed) >>> … # <<< Atomic Chat (managed) <<<` region. It strips
+ * all of them, and — like the Rust original — it does not consume the newline after the closing
+ * marker, which is why blank-line residue is expected. The DeepSeek Harness writer uses it; Codex's
+ * legacy regions are removed by `configure/codex-repair.ts`, which only removes what it recognises.
  */
 export function stripAtomicManagedBlock(content) {
     let result = content;
@@ -210,10 +271,34 @@ export async function writeMarkedEnvToShell(fs, shell, platform, marker, prefix,
     await fs.write(rc, renderMarkedEnvBlock(existing, marker, prefix, entries));
 }
 // ── small shared helpers ────────────────────────────────────────────────────────────────────────
-/** TOML basic string escaping: only `\` and `"`, as the Rust writer does. */
+/**
+ * The inside of a TOML basic string. Everything TOML forbids raw is escaped — `\`, `"`, and every
+ * control character (the five with a short form use it, the rest and DEL become `\uXXXX`, upper-case
+ * hex) — so any value yields a file Codex can parse. The desktop writer escapes the same way, which is
+ * what keeps the two sides' profile files byte-identical.
+ */
 export function tomlBasicStringEscape(value) {
-    return value.replace(/\\/g, '\\\\').replace(/"/g, '\\"');
+    let out = '';
+    for (const char of value) {
+        const short = TOML_SHORT_ESCAPES[char];
+        if (short !== undefined) {
+            out += short;
+            continue;
+        }
+        const code = char.codePointAt(0);
+        out += code < 0x20 || code === 0x7f ? `\\u${code.toString(16).toUpperCase().padStart(4, '0')}` : char;
+    }
+    return out;
 }
+const TOML_SHORT_ESCAPES = {
+    '\\': '\\\\',
+    '"': '\\"',
+    '\b': '\\b',
+    '\t': '\\t',
+    '\n': '\\n',
+    '\f': '\\f',
+    '\r': '\\r',
+};
 /** The key an agent should use when the user configured none. Not uniform across agents. */
 export function keyOr(apiKey, fallback) {
     return apiKey && apiKey.length > 0 ? apiKey : fallback;

package/dist/integrations/config-io.js.map

@@ -1 +1 @@
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package/dist/integrations/configure/codex-repair.d.ts

@@ -0,0 +1,75 @@
+/**
+ * Undo what earlier Atomic Chat versions wrote into Codex's shared `config.toml`.
+ *
+ * Until the profile file (`codex.ts`), the Codex writer edited `<codex_home>/config.toml` itself,
+ * inside `# >>> Atomic Chat (managed) >>>` … `# <<< Atomic Chat (managed) <<<` regions. V1 (the first
+ * Launch page) appended one region: `[model_providers.atomic]` and `[profiles.atomic]`. V2 kept two:
+ * root `model` + `model_provider = "atomic"` at the very top, `[model_providers.atomic]` at the end.
+ * V2 is the incident: a user with a root `model` of their own got a duplicate key, and Codex — the CLI
+ * and the ChatGPT desktop app, which share the file — refused to start until it was fixed by hand.
+ *
+ * Deleting text from a file that is not ours is safe only for text we can prove is ours, so this is
+ * strict where it could be clever. A marker counts only as a whole line; the regions must pair up;
+ * each must parse on its own and hold nothing but keys some version wrote, with the values it wrote;
+ * the file without them must still parse; and it must not have changed since it was read. Anything
+ * else is a conflict: the file stays byte for byte as it was, and the message names it and says which
+ * lines to remove by hand. A repair keeps a backup of the original (never over an earlier one) and
+ * writes atomically with the file's own permission bits. A `config.toml` that is a symbolic link (a
+ * dotfile manager's) is written through: the temp file and the rename happen beside the real file,
+ * which gets the new text while the link stays a link; the backup still goes next to the link.
+ *
+ * The algorithm is shared with the desktop app, which runs it at startup and on disconnect; both
+ * sides must reach the same decision on the same bytes
+ * (ADR 2026-10-27-codex-runs-on-a-profile-of-its-own).
+ */
+import type { ConfigFs } from '../config-io.js';
+/** What the removed regions said, for a caller that wants to carry the setup over to the profile. */
+export interface CodexLegacySettings {
+    model?: string;
+    baseUrl?: string;
+    /** The provider named `ATOMIC_CHAT_API_KEY` as its key variable. */
+    keyed: boolean;
+}
+export type CodexRepairResult = 
+/** No `config.toml`, or nothing of ours in it. Nothing was written. */
+{
+    kind: 'clean';
+} | {
+    kind: 'repaired';
+    backupPath: string;
+    legacy: CodexLegacySettings;
+}
+/** Something we cannot prove is ours. Nothing was written; `reason` is the user-facing message. */
+ | {
+    kind: 'conflict';
+    reason: string;
+};
+/** The decision on one file's text, before any I/O: what to write instead, or why not. */
+export type CodexRepairPlan = {
+    kind: 'clean';
+} | {
+    kind: 'conflict';
+    reason: string;
+} | {
+    kind: 'repair';
+    text: string;
+    legacy: CodexLegacySettings;
+};
+/**
+ * The settings in one region when it holds exactly what some Atomic Chat version wrote, else
+ * `undefined`. Inline tables and dotted keys mean the same to Codex, so they are accepted too.
+ */
+export declare function recogniseLegacyRegion(doc: Record<string, unknown>): CodexLegacySettings | undefined;
+/**
+ * Steps 2–6 of the repair on a file's text: find and pair the marker lines, recognise every region,
+ * remove them, and check what is left. Pure, so every rule is testable on a string.
+ */
+export declare function planCodexConfigRepair(original: string, path: string): CodexRepairPlan;
+/** The first free backup name: `config.toml.atomic-chat-backup`, then `-2`, `-3`, … */
+export declare function codexBackupPath(path: string, attempt: number): string;
+/**
+ * Remove every legacy Atomic Chat region from `<dir>/config.toml`. Returns a conflict rather than
+ * throwing for a file it will not touch; throws only when the file could not be read, backed up or
+ * written. Either way a file that was not repaired is exactly as it was.
+ */
+export declare function repairLegacyCodexConfig(fs: ConfigFs, dir: string, platform: NodeJS.Platform): Promise<CodexRepairResult>;

package/dist/integrations/configure/codex-repair.js

@@ -0,0 +1,254 @@
+/**
+ * Undo what earlier Atomic Chat versions wrote into Codex's shared `config.toml`.
+ *
+ * Until the profile file (`codex.ts`), the Codex writer edited `<codex_home>/config.toml` itself,
+ * inside `# >>> Atomic Chat (managed) >>>` … `# <<< Atomic Chat (managed) <<<` regions. V1 (the first
+ * Launch page) appended one region: `[model_providers.atomic]` and `[profiles.atomic]`. V2 kept two:
+ * root `model` + `model_provider = "atomic"` at the very top, `[model_providers.atomic]` at the end.
+ * V2 is the incident: a user with a root `model` of their own got a duplicate key, and Codex — the CLI
+ * and the ChatGPT desktop app, which share the file — refused to start until it was fixed by hand.
+ *
+ * Deleting text from a file that is not ours is safe only for text we can prove is ours, so this is
+ * strict where it could be clever. A marker counts only as a whole line; the regions must pair up;
+ * each must parse on its own and hold nothing but keys some version wrote, with the values it wrote;
+ * the file without them must still parse; and it must not have changed since it was read. Anything
+ * else is a conflict: the file stays byte for byte as it was, and the message names it and says which
+ * lines to remove by hand. A repair keeps a backup of the original (never over an earlier one) and
+ * writes atomically with the file's own permission bits. A `config.toml` that is a symbolic link (a
+ * dotfile manager's) is written through: the temp file and the rename happen beside the real file,
+ * which gets the new text while the link stays a link; the backup still goes next to the link.
+ *
+ * The algorithm is shared with the desktop app, which runs it at startup and on disconnect; both
+ * sides must reach the same decision on the same bytes
+ * (ADR 2026-10-27-codex-runs-on-a-profile-of-its-own).
+ */
+import { join } from 'node:path';
+import { parse as parseToml } from 'smol-toml';
+import { AtomicCoreError } from '../../contracts/index.js';
+import { ATOMIC_MANAGED_BEGIN, ATOMIC_MANAGED_END } from '../config-io.js';
+const ROOT_KEYS = new Set(['model', 'model_provider', 'model_providers', 'profiles']);
+const PROVIDER_KEYS = new Set(['name', 'base_url', 'env_key']);
+const PROFILE_KEYS = new Set(['model', 'model_provider']);
+/** A user's own big integers are valid TOML, not a reason to call their file broken. */
+const parseTomlDocument = (text) => parseToml(text, { integersAsBigInt: 'asNeeded' });
+function splitLines(content) {
+    const lines = [];
+    for (let start = 0; start < content.length;) {
+        const newline = content.indexOf('\n', start);
+        const end = newline < 0 ? content.length : newline + 1;
+        const raw = content.slice(start, end);
+        lines.push({ raw, text: raw.replace(/\n$/, '').replace(/\r$/, '') });
+        start = end;
+    }
+    return lines;
+}
+const conflict = (path, problem) => ({
+    kind: 'conflict',
+    reason: `Atomic Chat cannot remove its old settings from ${path}: ${problem}. ` +
+        `Remove the lines between "${ATOMIC_MANAGED_BEGIN}" and "${ATOMIC_MANAGED_END}" by hand, ` +
+        'markers included, then connect Codex again.',
+});
+/** The first line of a parser error, which is the message; the rest is a code frame. */
+const parserMessage = (e) => String(e.message).split('\n')[0];
+const isTable = (value) => typeof value === 'object' && value !== null && !Array.isArray(value) && !(value instanceof Date);
+const only = (table, allowed) => Object.keys(table).every((key) => allowed.has(key));
+/** `{ atomic = { … } }` and nothing else beside it. */
+function soleAtomicTable(value) {
+    if (!isTable(value) || Object.keys(value).join() !== 'atomic')
+        return undefined;
+    const atomic = value['atomic'];
+    return isTable(atomic) ? atomic : undefined;
+}
+/**
+ * The settings in one region when it holds exactly what some Atomic Chat version wrote, else
+ * `undefined`. Inline tables and dotted keys mean the same to Codex, so they are accepted too.
+ */
+export function recogniseLegacyRegion(doc) {
+    if (Object.keys(doc).length === 0 || !only(doc, ROOT_KEYS))
+        return undefined;
+    const found = { keyed: false };
+    const has = (key) => Object.hasOwn(doc, key);
+    if (has('model')) {
+        const model = doc['model'];
+        if (typeof model !== 'string')
+            return undefined;
+        found.model = model;
+    }
+    if (has('model_provider') && doc['model_provider'] !== 'atomic')
+        return undefined;
+    if (has('model_providers')) {
+        const provider = soleAtomicTable(doc['model_providers']);
+        if (!provider || !only(provider, PROVIDER_KEYS))
+            return undefined;
+        const baseUrl = provider['base_url'];
+        if (provider['name'] !== 'Atomic Chat' || typeof baseUrl !== 'string')
+            return undefined;
+        const keyed = Object.hasOwn(provider, 'env_key');
+        if (keyed && provider['env_key'] !== 'ATOMIC_CHAT_API_KEY')
+            return undefined;
+        found.baseUrl = baseUrl;
+        found.keyed = keyed;
+    }
+    if (has('profiles')) {
+        const profile = soleAtomicTable(doc['profiles']);
+        if (!profile || !only(profile, PROFILE_KEYS))
+            return undefined;
+        const model = profile['model'];
+        if (typeof model !== 'string' || profile['model_provider'] !== 'atomic')
+            return undefined;
+        found.model ??= model;
+    }
+    return found;
+}
+/**
+ * Steps 2–6 of the repair on a file's text: find and pair the marker lines, recognise every region,
+ * remove them, and check what is left. Pure, so every rule is testable on a string.
+ */
+export function planCodexConfigRepair(original, path) {
+    const lines = splitLines(original);
+    const markers = [];
+    for (const [index, { text }] of lines.entries()) {
+        if (text === ATOMIC_MANAGED_BEGIN || text === ATOMIC_MANAGED_END) {
+            markers.push({ index, begin: text === ATOMIC_MANAGED_BEGIN });
+        }
+        else if (text.includes(ATOMIC_MANAGED_BEGIN) || text.includes(ATOMIC_MANAGED_END)) {
+            return conflict(path, `line ${index + 1} has an Atomic Chat marker inside other text`);
+        }
+    }
+    if (markers.length === 0)
+        return { kind: 'clean' };
+    const regions = [];
+    let open;
+    for (const { index, begin } of markers) {
+        if (begin && open !== undefined)
+            return conflict(path, `line ${index + 1} opens a block inside the one opened on line ${open + 1}`);
+        if (!begin && open === undefined)
+            return conflict(path, `line ${index + 1} closes a block that was never opened`);
+        if (begin)
+            open = index;
+        else {
+            regions.push({ begin: open, end: index });
+            open = undefined;
+        }
+    }
+    if (open !== undefined)
+        return conflict(path, `the block opened on line ${open + 1} is never closed`);
+    const found = [];
+    for (const [n, { begin, end }] of regions.entries()) {
+        const where = `block ${n + 1} (lines ${begin + 1}–${end + 1})`;
+        let doc;
+        try {
+            doc = parseTomlDocument(lines
+                .slice(begin + 1, end)
+                .map((line) => line.raw)
+                .join(''));
+        }
+        catch (e) {
+            return conflict(path, `${where} is not valid TOML (${parserMessage(e)})`);
+        }
+        const settings = recogniseLegacyRegion(doc);
+        if (!settings)
+            return conflict(path, `${where} has settings Atomic Chat never writes`);
+        found.push(settings);
+    }
+    // V2 split one setup over two regions: the model in the head, the endpoint in the tail.
+    const model = found.find((s) => s.model !== undefined)?.model;
+    const baseUrl = found.find((s) => s.baseUrl !== undefined)?.baseUrl;
+    const legacy = {
+        ...(model === undefined ? {} : { model }),
+        ...(baseUrl === undefined ? {} : { baseUrl }),
+        keyed: found.some((s) => s.keyed),
+    };
+    const removed = new Set();
+    for (const { begin, end } of regions)
+        for (let index = begin; index <= end; index++)
+            removed.add(index);
+    let kept = [...lines.keys()].filter((index) => !removed.has(index));
+    // The V2 head was followed by a blank line (or, after reruns, several); at the top of the file
+    // they are ours too. A file that did not start with a region keeps its leading lines as they are.
+    if (removed.has(0)) {
+        const first = kept.findIndex((index) => lines[index].text.trim() !== '');
+        kept = first < 0 ? [] : kept.slice(first);
+    }
+    const body = kept
+        .map((index) => lines[index].raw)
+        .join('')
+        .trimEnd();
+    const text = body === '' ? '' : `${body}\n`;
+    try {
+        parseTomlDocument(text);
+    }
+    catch (e) {
+        // Report the line as the user sees it in the file now, not in the text we were about to write.
+        // `TomlError.line` is 1-based; a message without one (or past the end) names no line.
+        const original = kept[e.line - 1];
+        const at = original === undefined ? '' : ` (line ${original + 1})`;
+        return {
+            kind: 'conflict',
+            reason: `${path} would still not be valid TOML after removing Atomic Chat's settings: ` +
+                `${parserMessage(e)}${at}. Fix the file, or remove the lines between "${ATOMIC_MANAGED_BEGIN}" ` +
+                `and "${ATOMIC_MANAGED_END}" by hand, markers included, then connect Codex again.`,
+        };
+    }
+    return { kind: 'repair', text, legacy };
+}
+/** The first free backup name: `config.toml.atomic-chat-backup`, then `-2`, `-3`, … */
+export function codexBackupPath(path, attempt) {
+    return attempt === 1 ? `${path}.atomic-chat-backup` : `${path}.atomic-chat-backup-${attempt}`;
+}
+const readFailure = (path, e) => new AtomicCoreError('IO_ERROR', `Failed to read ${path}`, e.message);
+async function readOrFail(fs, path) {
+    try {
+        return await fs.readStrict(path);
+    }
+    catch (e) {
+        throw readFailure(path, e);
+    }
+}
+/**
+ * Remove every legacy Atomic Chat region from `<dir>/config.toml`. Returns a conflict rather than
+ * throwing for a file it will not touch; throws only when the file could not be read, backed up or
+ * written. Either way a file that was not repaired is exactly as it was.
+ */
+export async function repairLegacyCodexConfig(fs, dir, platform) {
+    const path = join(dir, 'config.toml');
+    const original = await readOrFail(fs, path);
+    if (original === undefined)
+        return { kind: 'clean' };
+    const plan = planCodexConfigRepair(original, path);
+    if (plan.kind !== 'repair')
+        return plan;
+    let target;
+    let mode;
+    try {
+        target = await fs.linkTarget(path);
+        mode = platform === 'win32' ? undefined : await fs.permissions(target);
+    }
+    catch (e) {
+        throw readFailure(path, e);
+    }
+    // Another program (Codex itself, an editor) may have saved the file while we were deciding.
+    if ((await readOrFail(fs, path)) !== original) {
+        return conflict(path, 'it changed while Atomic Chat was reading it');
+    }
+    const options = mode === undefined ? {} : { mode };
+    let backupPath;
+    try {
+        for (let attempt = 1; backupPath === undefined; attempt++) {
+            const candidate = codexBackupPath(path, attempt);
+            if (await fs.createNew(candidate, original, options))
+                backupPath = candidate;
+        }
+    }
+    catch (e) {
+        throw new AtomicCoreError('IO_ERROR', `Could not back up ${path} before removing Atomic Chat's old settings from it, so it was left as it was.`, e.message);
+    }
+    try {
+        await fs.write(target, plan.text, options);
+    }
+    catch (e) {
+        throw new AtomicCoreError('IO_ERROR', `Failed to write ${target}`, e.message);
+    }
+    return { kind: 'repaired', backupPath, legacy: plan.legacy };
+}
+//# sourceMappingURL=codex-repair.js.map