@astroanywhere/agent 0.1.0

package/dist/lib/slurm-executor.d.ts

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+/**
+ * Slurm Executor
+ *
+ * Handles Slurm job submission and monitoring.
+ */
+import type { SlurmInfo, SlurmJobStatus, SlurmJobConfig } from '../types.js';
+export interface SlurmTaskInput {
+    taskId: string;
+    projectId: string;
+    nodeId: string;
+    title: string;
+    description: string;
+    workingDirectory?: string;
+    config?: SlurmJobConfig;
+}
+export interface SlurmExecuteOptions {
+    onStatus: (status: SlurmJobStatus) => void;
+    onOutput: (stream: 'stdout' | 'stderr', data: string) => void;
+    signal?: AbortSignal;
+}
+export interface SlurmExecuteResult {
+    status: string;
+    output?: string;
+    error?: string;
+    exitCode?: number;
+    slurmJobId?: string;
+}
+export declare class SlurmExecutor {
+    private slurmInfo;
+    private jobs;
+    private scriptDir;
+    constructor(slurmInfo: SlurmInfo);
+    /**
+     * Execute a task via Slurm
+     */
+    execute(task: SlurmTaskInput, options: SlurmExecuteOptions): Promise<SlurmExecuteResult>;
+    /**
+     * Cancel a task
+     */
+    cancel(taskId: string): Promise<boolean>;
+    /**
+     * Cancel all tasks
+     */
+    cancelAll(): Promise<void>;
+    /**
+     * Generate Slurm batch script
+     */
+    private generateScript;
+    /**
+     * Extract commands from task description
+     */
+    private extractCommands;
+    /**
+     * Submit job to Slurm
+     */
+    private submitJob;
+    /**
+     * Monitor job until completion
+     */
+    private monitorJob;
+    /**
+     * Get job status from squeue/sacct
+     */
+    private getJobStatus;
+    /**
+     * Sanitize job name for Slurm
+     */
+    private sanitizeName;
+}
+//# sourceMappingURL=slurm-executor.d.ts.map

package/dist/lib/slurm-executor.d.ts.map

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package/dist/lib/slurm-executor.js

@@ -0,0 +1,402 @@
+/**
+ * Slurm Executor
+ *
+ * Handles Slurm job submission and monitoring.
+ */
+import { execFile } from 'node:child_process';
+import { promisify } from 'node:util';
+import * as fs from 'node:fs/promises';
+import * as path from 'node:path';
+import * as os from 'node:os';
+const execFileAsync = promisify(execFile);
+/** SLURM job IDs are numeric (optionally with array syntax like 12345_1). Validates and returns. */
+function sanitizedSlurmJobId(id) {
+    if (!/^\d+(_\d+)?$/.test(id)) {
+        throw new Error(`Invalid SLURM job ID (possible command injection): ${id}`);
+    }
+    return id;
+}
+export class SlurmExecutor {
+    slurmInfo;
+    jobs = new Map();
+    scriptDir;
+    constructor(slurmInfo) {
+        this.slurmInfo = slurmInfo;
+        this.scriptDir = path.join(os.tmpdir(), 'astro-slurm-scripts');
+        fs.mkdir(this.scriptDir, { recursive: true }).catch(() => {
+            // Ignore if already exists
+        });
+    }
+    /**
+     * Execute a task via Slurm
+     */
+    async execute(task, options) {
+        // Check if already aborted
+        if (options.signal?.aborted) {
+            return { status: 'cancelled' };
+        }
+        const slurmConfig = task.config ?? {};
+        // Generate batch script
+        const script = this.generateScript(task, slurmConfig);
+        const scriptPath = path.join(this.scriptDir, `astro_${task.taskId}.sh`);
+        await fs.writeFile(scriptPath, script, { mode: 0o755 });
+        // Submit job
+        const submitResult = await this.submitJob(scriptPath);
+        if (!submitResult.success || !submitResult.jobId) {
+            return {
+                status: 'failed',
+                error: submitResult.error || 'Job submission failed',
+            };
+        }
+        const slurmJobId = submitResult.jobId;
+        // Set up output paths
+        const workdir = task.workingDirectory || process.cwd();
+        const outputPath = path.join(workdir, `astro_${task.taskId}_${slurmJobId}.out`);
+        const errorPath = path.join(workdir, `astro_${task.taskId}_${slurmJobId}.err`);
+        // Track the job
+        const tracker = {
+            taskId: task.taskId,
+            slurmJobId,
+            outputPath,
+            errorPath,
+        };
+        this.jobs.set(task.taskId, tracker);
+        // Wire abort signal to scancel
+        if (options.signal) {
+            const onAbort = () => {
+                this.cancel(task.taskId);
+            };
+            options.signal.addEventListener('abort', onAbort, { once: true });
+        }
+        // Monitor job
+        const result = await this.monitorJob(tracker, options);
+        return { ...result, slurmJobId };
+    }
+    /**
+     * Cancel a task
+     */
+    async cancel(taskId) {
+        const tracker = this.jobs.get(taskId);
+        if (!tracker)
+            return false;
+        // Stop watcher
+        if (tracker.watcher) {
+            clearInterval(tracker.watcher);
+        }
+        // Cancel Slurm job
+        try {
+            await execFileAsync('scancel', [sanitizedSlurmJobId(tracker.slurmJobId)], { timeout: 10000 });
+        }
+        catch {
+            // Failed to cancel — job may have already finished
+        }
+        this.jobs.delete(taskId);
+        return true;
+    }
+    /**
+     * Cancel all tasks
+     */
+    async cancelAll() {
+        for (const [taskId] of this.jobs) {
+            await this.cancel(taskId);
+        }
+    }
+    /**
+     * Generate Slurm batch script
+     */
+    generateScript(task, config) {
+        const lines = [];
+        lines.push('#!/bin/bash');
+        lines.push('');
+        // Job name
+        lines.push(`#SBATCH --job-name=astro_${this.sanitizeName(task.title)}`);
+        // Output files
+        const workdir = task.workingDirectory || '$HOME';
+        lines.push(`#SBATCH --output=${workdir}/astro_${task.taskId}_%j.out`);
+        lines.push(`#SBATCH --error=${workdir}/astro_${task.taskId}_%j.err`);
+        // Partition
+        if (config.partition) {
+            lines.push(`#SBATCH --partition=${config.partition}`);
+        }
+        else if (this.slurmInfo.defaultPartition) {
+            lines.push(`#SBATCH --partition=${this.slurmInfo.defaultPartition}`);
+        }
+        // Resources
+        if (config.nodes)
+            lines.push(`#SBATCH --nodes=${config.nodes}`);
+        if (config.ntasks)
+            lines.push(`#SBATCH --ntasks=${config.ntasks}`);
+        if (config.cpusPerTask)
+            lines.push(`#SBATCH --cpus-per-task=${config.cpusPerTask}`);
+        if (config.mem)
+            lines.push(`#SBATCH --mem=${config.mem}`);
+        // GPU
+        if (config.gpu) {
+            const gpuSpec = config.gpu.type
+                ? `${config.gpu.type}:${config.gpu.count}`
+                : config.gpu.count.toString();
+            lines.push(`#SBATCH --gres=gpu:${gpuSpec}`);
+        }
+        // Time limit
+        if (config.time) {
+            lines.push(`#SBATCH --time=${config.time}`);
+        }
+        else {
+            lines.push('#SBATCH --time=02:00:00'); // Default 2 hours
+        }
+        // QOS and account
+        if (config.qos)
+            lines.push(`#SBATCH --qos=${config.qos}`);
+        if (config.account) {
+            lines.push(`#SBATCH --account=${config.account}`);
+        }
+        else if (this.slurmInfo.accounts.length > 0) {
+            lines.push(`#SBATCH --account=${this.slurmInfo.accounts[0]}`);
+        }
+        lines.push('');
+        lines.push('# Exit on error');
+        lines.push('set -e');
+        lines.push('');
+        lines.push('# Job info');
+        lines.push('echo "=== Astro Job ==="');
+        lines.push('echo "Job ID: $SLURM_JOB_ID"');
+        lines.push('echo "Job Name: $SLURM_JOB_NAME"');
+        lines.push('echo "Node: $SLURMD_NODENAME"');
+        lines.push('echo "Start: $(date)"');
+        lines.push('echo "Working directory: $(pwd)"');
+        lines.push('echo "=================="');
+        lines.push('');
+        // Load modules
+        if (config.modules && config.modules.length > 0) {
+            lines.push('# Load modules');
+            for (const mod of config.modules) {
+                lines.push(`module load ${mod}`);
+            }
+            lines.push('');
+        }
+        // Environment variables (shell-escaped with single quotes)
+        lines.push('# Environment');
+        lines.push(`export ASTRO_TASK_ID='${shellEscape(task.taskId)}'`);
+        lines.push(`export ASTRO_PROJECT_ID='${shellEscape(task.projectId)}'`);
+        lines.push('');
+        // Extract and add commands from task description
+        lines.push('# Task commands');
+        const commands = this.extractCommands(task.description);
+        for (const cmd of commands) {
+            lines.push(cmd);
+        }
+        lines.push('');
+        lines.push('echo "=================="');
+        lines.push('echo "End: $(date)"');
+        lines.push('echo "Exit code: $?"');
+        return lines.join('\n');
+    }
+    /**
+     * Extract commands from task description
+     */
+    extractCommands(description) {
+        const commands = [];
+        // Look for code blocks
+        const codeBlockMatch = description.match(/```(?:bash|sh|shell)?\n([\s\S]*?)```/g);
+        if (codeBlockMatch) {
+            for (const block of codeBlockMatch) {
+                const code = block.replace(/```(?:bash|sh|shell)?\n?/, '').replace(/```$/, '').trim();
+                commands.push(code);
+            }
+            return commands;
+        }
+        // Look for command patterns in lines
+        const lines = description.split('\n');
+        for (const line of lines) {
+            const trimmed = line.trim();
+            if (!trimmed || trimmed.startsWith('#'))
+                continue;
+            if (trimmed.startsWith('python ') ||
+                trimmed.startsWith('python3 ') ||
+                trimmed.startsWith('Rscript ') ||
+                trimmed.startsWith('bash ') ||
+                trimmed.startsWith('./') ||
+                trimmed.startsWith('make ') ||
+                trimmed.match(/^\w+\s+/)) {
+                commands.push(trimmed);
+            }
+        }
+        if (commands.length === 0) {
+            commands.push(`# Task: ${description.substring(0, 200).replace(/\n/g, ' ')}`);
+            commands.push('echo "No explicit commands found. Task description stored above."');
+        }
+        return commands;
+    }
+    /**
+     * Submit job to Slurm
+     */
+    async submitJob(scriptPath) {
+        try {
+            const { stdout, stderr } = await execFileAsync('sbatch', [scriptPath], { timeout: 30000 });
+            const jobIdMatch = stdout.match(/Submitted batch job (\d+)/);
+            if (jobIdMatch) {
+                return { success: true, jobId: jobIdMatch[1] };
+            }
+            return { success: false, error: stderr || stdout || 'Unknown submission error' };
+        }
+        catch (error) {
+            return {
+                success: false,
+                error: error instanceof Error ? error.message : 'Submission failed',
+            };
+        }
+    }
+    /**
+     * Monitor job until completion
+     */
+    async monitorJob(tracker, options) {
+        return new Promise((resolve) => {
+            let lastOutputOffset = 0;
+            let lastErrorOffset = 0;
+            let lastState = '';
+            const checkJob = async () => {
+                // Check if aborted
+                if (options.signal?.aborted) {
+                    if (tracker.watcher) {
+                        clearInterval(tracker.watcher);
+                    }
+                    this.cancel(tracker.taskId);
+                    resolve({ status: 'cancelled' });
+                    return;
+                }
+                // Check job status
+                const status = await this.getJobStatus(tracker.slurmJobId);
+                if (status && status.state !== lastState) {
+                    lastState = status.state;
+                    options.onStatus(status);
+                }
+                // Stream stdout
+                try {
+                    const stat = await fs.stat(tracker.outputPath);
+                    if (stat.size > lastOutputOffset) {
+                        const fd = await fs.open(tracker.outputPath, 'r');
+                        const buffer = Buffer.alloc(stat.size - lastOutputOffset);
+                        await fd.read(buffer, 0, buffer.length, lastOutputOffset);
+                        await fd.close();
+                        lastOutputOffset = stat.size;
+                        const data = buffer.toString('utf-8');
+                        if (data)
+                            options.onOutput('stdout', data);
+                    }
+                }
+                catch {
+                    // File doesn't exist yet
+                }
+                // Stream stderr
+                try {
+                    const stat = await fs.stat(tracker.errorPath);
+                    if (stat.size > lastErrorOffset) {
+                        const fd = await fs.open(tracker.errorPath, 'r');
+                        const buffer = Buffer.alloc(stat.size - lastErrorOffset);
+                        await fd.read(buffer, 0, buffer.length, lastErrorOffset);
+                        await fd.close();
+                        lastErrorOffset = stat.size;
+                        const data = buffer.toString('utf-8');
+                        if (data)
+                            options.onOutput('stderr', data);
+                    }
+                }
+                catch {
+                    // File doesn't exist yet
+                }
+                // Check for completion
+                if (status && ['COMPLETED', 'FAILED', 'CANCELLED', 'TIMEOUT', 'NODE_FAIL', 'OUT_OF_MEMORY'].includes(status.state)) {
+                    if (tracker.watcher) {
+                        clearInterval(tracker.watcher);
+                    }
+                    this.jobs.delete(tracker.taskId);
+                    // Read final output
+                    let output = '';
+                    try {
+                        output = await fs.readFile(tracker.outputPath, 'utf-8');
+                    }
+                    catch {
+                        // Ignore
+                    }
+                    let error = '';
+                    try {
+                        error = await fs.readFile(tracker.errorPath, 'utf-8');
+                    }
+                    catch {
+                        // Ignore
+                    }
+                    resolve({
+                        status: status.state === 'COMPLETED' && status.exitCode === 0 ? 'completed' : 'failed',
+                        output,
+                        error: error || (status.exitCode !== 0 ? `Exit code: ${status.exitCode}` : undefined),
+                        exitCode: status.exitCode,
+                    });
+                }
+            };
+            // Initial check
+            checkJob();
+            // Poll every 5 seconds
+            tracker.watcher = setInterval(checkJob, 5000);
+        });
+    }
+    /**
+     * Get job status from squeue/sacct
+     */
+    async getJobStatus(jobId) {
+        const safeJobId = sanitizedSlurmJobId(jobId);
+        // Try squeue first (for running jobs)
+        try {
+            const { stdout } = await execFileAsync('squeue', ['-j', safeJobId, '-h', '-o', '%T|%r|%N|%e'], { timeout: 10000 });
+            const trimmed = stdout.trim();
+            if (trimmed) {
+                const [state, stateReason, nodeList] = trimmed.split('|');
+                return {
+                    jobId,
+                    state: state || 'UNKNOWN',
+                    stateReason: stateReason !== '(null)' ? stateReason : undefined,
+                    nodeList: nodeList !== '(null)' ? nodeList : undefined,
+                };
+            }
+        }
+        catch {
+            // Job not in queue, check sacct
+        }
+        // Try sacct (for completed jobs)
+        try {
+            const { stdout } = await execFileAsync('sacct', ['-j', safeJobId, '--parsable2', '--noheader', '-o', 'State,ExitCode,NodeList'], { timeout: 10000 });
+            const lines = stdout.trim().split('\n');
+            const mainLine = lines.find((l) => !l.includes('.'));
+            if (mainLine) {
+                const [state, exitCodeRaw, nodeList] = mainLine.split('|');
+                let exitCode;
+                if (exitCodeRaw && exitCodeRaw.includes(':')) {
+                    exitCode = parseInt(exitCodeRaw.split(':')[0]);
+                }
+                return {
+                    jobId,
+                    state: state?.split(' ')[0] || 'UNKNOWN',
+                    nodeList: nodeList || undefined,
+                    exitCode,
+                };
+            }
+        }
+        catch {
+            // sacct failed
+        }
+        return null;
+    }
+    /**
+     * Sanitize job name for Slurm
+     */
+    sanitizeName(name) {
+        return name
+            .replace(/[^a-zA-Z0-9_-]/g, '_')
+            .replace(/_+/g, '_')
+            .substring(0, 40);
+    }
+}
+/** Shell-escape a string by replacing single quotes with '\'' */
+function shellEscape(value) {
+    return value.replace(/'/g, "'\\''");
+}
+//# sourceMappingURL=slurm-executor.js.map

package/dist/lib/slurm-executor.js.map

@@ -0,0 +1 @@
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package/dist/lib/slurm-job-monitor.d.ts

@@ -0,0 +1,52 @@
+/**
+ * Slurm Job Monitor
+ *
+ * Background poller that tracks submitted Slurm batch jobs (sbatch).
+ * Monitors job status via sacct and streams updates through the
+ * existing WebSocket relay protocol.
+ */
+import type { WebSocketClient } from './websocket-client.js';
+export declare class SlurmJobMonitor {
+    private jobs;
+    private pollInterval;
+    private wsClient;
+    private pollIntervalMs;
+    constructor(wsClient: WebSocketClient, pollIntervalMs?: number);
+    /**
+     * Track a submitted Slurm job
+     */
+    trackJob(slurmJobId: string, executionId: string, nodeId: string, outputPath?: string): void;
+    /**
+     * Stop tracking a job
+     */
+    untrackJob(slurmJobId: string): void;
+    /**
+     * Check if any jobs are being tracked
+     */
+    hasTrackedJobs(): boolean;
+    /**
+     * Get tracked job IDs for a given execution
+     */
+    getJobsForExecution(executionId: string): string[];
+    /**
+     * Start the polling loop
+     */
+    start(): void;
+    /**
+     * Stop the polling loop
+     */
+    stop(): void;
+    /**
+     * Poll all tracked jobs
+     */
+    private pollAll;
+    /**
+     * Poll a single job's status via sacct
+     */
+    private pollJob;
+    /**
+     * Stream new output from the job's output file
+     */
+    private streamOutput;
+}
+//# sourceMappingURL=slurm-job-monitor.d.ts.map

package/dist/lib/slurm-job-monitor.d.ts.map

@@ -0,0 +1 @@
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