@askexenow/exe-os 0.9.38 → 0.9.39

package/dist/bin/exe-new-employee.js

@@ -302,7 +302,8 @@ function loadEmployeesSync(employeesPath = EMPLOYEES_PATH) {
   }
 }
 function addEmployee(employees, employee) {
-  const normalized = { ...employee, name: employee.name.toLowerCase() };
+  const { systemPrompt: _legacyPrompt, ...rest } = employee;
+  const normalized = { ...rest, name: employee.name.toLowerCase() };
   if (employees.some((e) => e.name.toLowerCase() === normalized.name)) {
     throw new Error(`Employee '${normalized.name}' already exists`);
   }
@@ -1034,6 +1035,9 @@ function ensureDir() {
 function identityPath(agentId) {
   return path8.join(IDENTITY_DIR2, `${agentId}.md`);
 }
+function sanitizeIdentityBody(body) {
+  return body.replace(/<!--[\s\S]*?-->/g, "").trim();
+}
 function parseFrontmatter(raw) {
   const match = raw.match(/^---\n([\s\S]*?)\n---\n([\s\S]*)$/);
   if (!match) {
@@ -1046,11 +1050,11 @@ function parseFrontmatter(raw) {
         created_by: "system",
         updated_at: (/* @__PURE__ */ new Date()).toISOString()
       },
-      body: raw
+      body: sanitizeIdentityBody(raw)
     };
   }
   const yamlStr = match[1];
-  const body = match[2].trim();
+  const body = sanitizeIdentityBody(match[2]);
   const fm = {};
   for (const line of yamlStr.split("\n")) {
     const kv = line.match(/^(\w+):\s*(.+)$/);
@@ -1115,7 +1119,9 @@ function listIdentities() {
     const summary = lines[0]?.trim().slice(0, 120) ?? identity.frontmatter.title;
     results.push({
       agentId,
-      title: `${identity.frontmatter.title} (${identity.frontmatter.role.toUpperCase()})`,
+      // User-facing/team-facing title only. `frontmatter.role` is internal
+      // routing metadata and must not leak as an external title.
+      title: identity.frontmatter.title,
       summary
     });
   }
@@ -3179,11 +3185,12 @@ async function main() {
     );
     process.exit(1);
   }
+  const rolePrompt = template ? personalizePrompt(template.systemPrompt, template.name, name) : buildCustomEmployeePrompt(name, "specialist");
   if (template) {
+    const { systemPrompt: _templatePrompt, ...templateMeta } = template;
     newEmployee = {
-      ...template,
+      ...templateMeta,
       name,
-      systemPrompt: personalizePrompt(template.systemPrompt, template.name, name),
       createdAt: (/* @__PURE__ */ new Date()).toISOString(),
       templateName: effectiveTemplate,
       templateVersion: TEMPLATE_VERSION
@@ -3192,7 +3199,6 @@ async function main() {
     newEmployee = {
       name,
       role: "specialist",
-      systemPrompt: buildCustomEmployeePrompt(name, "specialist"),
       createdAt: (/* @__PURE__ */ new Date()).toISOString(),
       templateName: "custom",
       templateVersion: TEMPLATE_VERSION
@@ -3227,13 +3233,26 @@ async function main() {
     };
     const templateKey = roleMap[effectiveTemplate] ?? null;
     const identityTemplate = templateKey ? getIdentityTemplate(templateKey) : null;
+    const idPath = identityPath2(name);
+    const dir = path12.dirname(idPath);
+    if (!fs.existsSync(dir)) fs.mkdirSync(dir, { recursive: true });
     if (identityTemplate) {
-      const idPath = identityPath2(name);
-      const dir = path12.dirname(idPath);
-      if (!fs.existsSync(dir)) fs.mkdirSync(dir, { recursive: true });
       const content = identityTemplate.replace(/^agent_id: \w+/m, `agent_id: ${name}`);
       fs.writeFileSync(idPath, content, "utf-8");
       console.log(`Identity doc written: ~/.exe-os/identity/${name}.md`);
+    } else if (!fs.existsSync(idPath)) {
+      const content = `---
+role: specialist
+title: Specialist
+agent_id: ${name}
+org_level: specialist
+created_by: exe-new-employee
+updated_at: ${(/* @__PURE__ */ new Date()).toISOString()}
+---
+
+${rolePrompt}`;
+      fs.writeFileSync(idPath, content, "utf-8");
+      console.log(`Identity doc written: ~/.exe-os/identity/${name}.md`);
     }
   } catch {
   }

package/dist/bin/exe-pending-messages.js

@@ -3669,7 +3669,7 @@ __export(shard_manager_exports, {
   shardExists: () => shardExists
 });
 import path13 from "path";
-import { existsSync as existsSync12, mkdirSync as mkdirSync5, readdirSync as readdirSync2 } from "fs";
+import { existsSync as existsSync12, mkdirSync as mkdirSync5, readdirSync as readdirSync2, renameSync as renameSync4, statSync as statSync2 } from "fs";
 import { createClient as createClient2 } from "@libsql/client";
 function initShardManager(encryptionKey) {
   _encryptionKey = encryptionKey;
@@ -3691,7 +3691,7 @@ function getShardClient(projectName) {
   if (!_encryptionKey) {
     throw new Error("Shard manager not initialized. Call initShardManager() first.");
   }
-  const safeName = projectName.replace(/[^a-zA-Z0-9_-]/g, "_");
+  const safeName = safeShardName(projectName);
   if (!safeName || safeName === "unknown") {
     throw new Error(`Invalid project name for shard: "${projectName}" (resolved to "${safeName}")`);
   }
@@ -3713,9 +3713,12 @@ function getShardClient(projectName) {
   return client;
 }
 function shardExists(projectName) {
-  const safeName = projectName.replace(/[^a-zA-Z0-9_-]/g, "_");
+  const safeName = safeShardName(projectName);
   return existsSync12(path13.join(SHARDS_DIR, `${safeName}.db`));
 }
+function safeShardName(projectName) {
+  return projectName.replace(/[^a-zA-Z0-9_-]/g, "_");
+}
 function listShards() {
   if (!existsSync12(SHARDS_DIR)) return [];
   return readdirSync2(SHARDS_DIR).filter((f) => f.endsWith(".db")).map((f) => f.replace(".db", ""));
@@ -3809,7 +3812,8 @@ async function ensureShardSchema(client) {
     "ALTER TABLE memories ADD COLUMN token_cost REAL",
     "ALTER TABLE memories ADD COLUMN audience TEXT",
     "ALTER TABLE memories ADD COLUMN language_type TEXT",
-    "ALTER TABLE memories ADD COLUMN parent_memory_id TEXT"
+    "ALTER TABLE memories ADD COLUMN parent_memory_id TEXT",
+    "ALTER TABLE memories ADD COLUMN deleted_at TEXT"
   ]) {
     try {
       await client.execute(col);
@@ -3905,9 +3909,32 @@ async function ensureShardSchema(client) {
   }
 }
 async function getReadyShardClient(projectName) {
-  const client = getShardClient(projectName);
-  await ensureShardSchema(client);
-  return client;
+  const safeName = safeShardName(projectName);
+  let client = getShardClient(projectName);
+  try {
+    await ensureShardSchema(client);
+    return client;
+  } catch (err) {
+    const message = err instanceof Error ? err.message : String(err);
+    if (!/SQLITE_NOTADB|file is not a database/i.test(message)) throw err;
+    client.close();
+    _shards.delete(safeName);
+    _shardLastAccess.delete(safeName);
+    const dbPath = path13.join(SHARDS_DIR, `${safeName}.db`);
+    if (existsSync12(dbPath)) {
+      const stat = statSync2(dbPath);
+      const stamp = (/* @__PURE__ */ new Date()).toISOString().replace(/[:.]/g, "-");
+      const archivedPath = path13.join(SHARDS_DIR, `${safeName}.db.broken-${stamp}`);
+      renameSync4(dbPath, archivedPath);
+      process.stderr.write(
+        `[shard-manager] Archived unreadable shard ${safeName}: ${archivedPath} (${stat.size} bytes, mtime ${stat.mtime.toISOString()})
+`
+      );
+    }
+    client = getShardClient(projectName);
+    await ensureShardSchema(client);
+    return client;
+  }
 }
 function evictLRU() {
   let oldest = null;

package/dist/bin/exe-pending-notifications.js

@@ -3735,7 +3735,7 @@ __export(shard_manager_exports, {
   shardExists: () => shardExists
 });
 import path14 from "path";
-import { existsSync as existsSync13, mkdirSync as mkdirSync5, readdirSync as readdirSync3 } from "fs";
+import { existsSync as existsSync13, mkdirSync as mkdirSync5, readdirSync as readdirSync3, renameSync as renameSync4, statSync as statSync2 } from "fs";
 import { createClient as createClient2 } from "@libsql/client";
 function initShardManager(encryptionKey) {
   _encryptionKey = encryptionKey;
@@ -3757,7 +3757,7 @@ function getShardClient(projectName) {
   if (!_encryptionKey) {
     throw new Error("Shard manager not initialized. Call initShardManager() first.");
   }
-  const safeName = projectName.replace(/[^a-zA-Z0-9_-]/g, "_");
+  const safeName = safeShardName(projectName);
   if (!safeName || safeName === "unknown") {
     throw new Error(`Invalid project name for shard: "${projectName}" (resolved to "${safeName}")`);
   }
@@ -3779,9 +3779,12 @@ function getShardClient(projectName) {
   return client;
 }
 function shardExists(projectName) {
-  const safeName = projectName.replace(/[^a-zA-Z0-9_-]/g, "_");
+  const safeName = safeShardName(projectName);
   return existsSync13(path14.join(SHARDS_DIR, `${safeName}.db`));
 }
+function safeShardName(projectName) {
+  return projectName.replace(/[^a-zA-Z0-9_-]/g, "_");
+}
 function listShards() {
   if (!existsSync13(SHARDS_DIR)) return [];
   return readdirSync3(SHARDS_DIR).filter((f) => f.endsWith(".db")).map((f) => f.replace(".db", ""));
@@ -3875,7 +3878,8 @@ async function ensureShardSchema(client) {
     "ALTER TABLE memories ADD COLUMN token_cost REAL",
     "ALTER TABLE memories ADD COLUMN audience TEXT",
     "ALTER TABLE memories ADD COLUMN language_type TEXT",
-    "ALTER TABLE memories ADD COLUMN parent_memory_id TEXT"
+    "ALTER TABLE memories ADD COLUMN parent_memory_id TEXT",
+    "ALTER TABLE memories ADD COLUMN deleted_at TEXT"
   ]) {
     try {
       await client.execute(col);
@@ -3971,9 +3975,32 @@ async function ensureShardSchema(client) {
   }
 }
 async function getReadyShardClient(projectName) {
-  const client = getShardClient(projectName);
-  await ensureShardSchema(client);
-  return client;
+  const safeName = safeShardName(projectName);
+  let client = getShardClient(projectName);
+  try {
+    await ensureShardSchema(client);
+    return client;
+  } catch (err) {
+    const message = err instanceof Error ? err.message : String(err);
+    if (!/SQLITE_NOTADB|file is not a database/i.test(message)) throw err;
+    client.close();
+    _shards.delete(safeName);
+    _shardLastAccess.delete(safeName);
+    const dbPath = path14.join(SHARDS_DIR, `${safeName}.db`);
+    if (existsSync13(dbPath)) {
+      const stat = statSync2(dbPath);
+      const stamp = (/* @__PURE__ */ new Date()).toISOString().replace(/[:.]/g, "-");
+      const archivedPath = path14.join(SHARDS_DIR, `${safeName}.db.broken-${stamp}`);
+      renameSync4(dbPath, archivedPath);
+      process.stderr.write(
+        `[shard-manager] Archived unreadable shard ${safeName}: ${archivedPath} (${stat.size} bytes, mtime ${stat.mtime.toISOString()})
+`
+      );
+    }
+    client = getShardClient(projectName);
+    await ensureShardSchema(client);
+    return client;
+  }
 }
 function evictLRU() {
   let oldest = null;

package/dist/bin/exe-pending-reviews.js

@@ -3774,7 +3774,7 @@ __export(shard_manager_exports, {
   shardExists: () => shardExists
 });
 import path15 from "path";
-import { existsSync as existsSync14, mkdirSync as mkdirSync5, readdirSync as readdirSync4 } from "fs";
+import { existsSync as existsSync14, mkdirSync as mkdirSync5, readdirSync as readdirSync4, renameSync as renameSync4, statSync as statSync2 } from "fs";
 import { createClient as createClient2 } from "@libsql/client";
 function initShardManager(encryptionKey) {
   _encryptionKey = encryptionKey;
@@ -3796,7 +3796,7 @@ function getShardClient(projectName) {
   if (!_encryptionKey) {
     throw new Error("Shard manager not initialized. Call initShardManager() first.");
   }
-  const safeName = projectName.replace(/[^a-zA-Z0-9_-]/g, "_");
+  const safeName = safeShardName(projectName);
   if (!safeName || safeName === "unknown") {
     throw new Error(`Invalid project name for shard: "${projectName}" (resolved to "${safeName}")`);
   }
@@ -3818,9 +3818,12 @@ function getShardClient(projectName) {
   return client;
 }
 function shardExists(projectName) {
-  const safeName = projectName.replace(/[^a-zA-Z0-9_-]/g, "_");
+  const safeName = safeShardName(projectName);
   return existsSync14(path15.join(SHARDS_DIR, `${safeName}.db`));
 }
+function safeShardName(projectName) {
+  return projectName.replace(/[^a-zA-Z0-9_-]/g, "_");
+}
 function listShards() {
   if (!existsSync14(SHARDS_DIR)) return [];
   return readdirSync4(SHARDS_DIR).filter((f) => f.endsWith(".db")).map((f) => f.replace(".db", ""));
@@ -3914,7 +3917,8 @@ async function ensureShardSchema(client) {
     "ALTER TABLE memories ADD COLUMN token_cost REAL",
     "ALTER TABLE memories ADD COLUMN audience TEXT",
     "ALTER TABLE memories ADD COLUMN language_type TEXT",
-    "ALTER TABLE memories ADD COLUMN parent_memory_id TEXT"
+    "ALTER TABLE memories ADD COLUMN parent_memory_id TEXT",
+    "ALTER TABLE memories ADD COLUMN deleted_at TEXT"
   ]) {
     try {
       await client.execute(col);
@@ -4010,9 +4014,32 @@ async function ensureShardSchema(client) {
   }
 }
 async function getReadyShardClient(projectName) {
-  const client = getShardClient(projectName);
-  await ensureShardSchema(client);
-  return client;
+  const safeName = safeShardName(projectName);
+  let client = getShardClient(projectName);
+  try {
+    await ensureShardSchema(client);
+    return client;
+  } catch (err) {
+    const message = err instanceof Error ? err.message : String(err);
+    if (!/SQLITE_NOTADB|file is not a database/i.test(message)) throw err;
+    client.close();
+    _shards.delete(safeName);
+    _shardLastAccess.delete(safeName);
+    const dbPath = path15.join(SHARDS_DIR, `${safeName}.db`);
+    if (existsSync14(dbPath)) {
+      const stat = statSync2(dbPath);
+      const stamp = (/* @__PURE__ */ new Date()).toISOString().replace(/[:.]/g, "-");
+      const archivedPath = path15.join(SHARDS_DIR, `${safeName}.db.broken-${stamp}`);
+      renameSync4(dbPath, archivedPath);
+      process.stderr.write(
+        `[shard-manager] Archived unreadable shard ${safeName}: ${archivedPath} (${stat.size} bytes, mtime ${stat.mtime.toISOString()})
+`
+      );
+    }
+    client = getShardClient(projectName);
+    await ensureShardSchema(client);
+    return client;
+  }
 }
 function evictLRU() {
   let oldest = null;

package/dist/bin/exe-rename.js

@@ -3354,7 +3354,7 @@ __export(shard_manager_exports, {
   shardExists: () => shardExists
 });
 import path7 from "path";
-import { existsSync as existsSync7, mkdirSync as mkdirSync2, readdirSync } from "fs";
+import { existsSync as existsSync7, mkdirSync as mkdirSync2, readdirSync, renameSync as renameSync3, statSync as statSync2 } from "fs";
 import { createClient as createClient2 } from "@libsql/client";
 function initShardManager(encryptionKey) {
   _encryptionKey = encryptionKey;
@@ -3376,7 +3376,7 @@ function getShardClient(projectName) {
   if (!_encryptionKey) {
     throw new Error("Shard manager not initialized. Call initShardManager() first.");
   }
-  const safeName = projectName.replace(/[^a-zA-Z0-9_-]/g, "_");
+  const safeName = safeShardName(projectName);
   if (!safeName || safeName === "unknown") {
     throw new Error(`Invalid project name for shard: "${projectName}" (resolved to "${safeName}")`);
   }
@@ -3398,9 +3398,12 @@ function getShardClient(projectName) {
   return client;
 }
 function shardExists(projectName) {
-  const safeName = projectName.replace(/[^a-zA-Z0-9_-]/g, "_");
+  const safeName = safeShardName(projectName);
   return existsSync7(path7.join(SHARDS_DIR, `${safeName}.db`));
 }
+function safeShardName(projectName) {
+  return projectName.replace(/[^a-zA-Z0-9_-]/g, "_");
+}
 function listShards() {
   if (!existsSync7(SHARDS_DIR)) return [];
   return readdirSync(SHARDS_DIR).filter((f) => f.endsWith(".db")).map((f) => f.replace(".db", ""));
@@ -3494,7 +3497,8 @@ async function ensureShardSchema(client) {
     "ALTER TABLE memories ADD COLUMN token_cost REAL",
     "ALTER TABLE memories ADD COLUMN audience TEXT",
     "ALTER TABLE memories ADD COLUMN language_type TEXT",
-    "ALTER TABLE memories ADD COLUMN parent_memory_id TEXT"
+    "ALTER TABLE memories ADD COLUMN parent_memory_id TEXT",
+    "ALTER TABLE memories ADD COLUMN deleted_at TEXT"
   ]) {
     try {
       await client.execute(col);
@@ -3590,9 +3594,32 @@ async function ensureShardSchema(client) {
   }
 }
 async function getReadyShardClient(projectName) {
-  const client = getShardClient(projectName);
-  await ensureShardSchema(client);
-  return client;
+  const safeName = safeShardName(projectName);
+  let client = getShardClient(projectName);
+  try {
+    await ensureShardSchema(client);
+    return client;
+  } catch (err) {
+    const message = err instanceof Error ? err.message : String(err);
+    if (!/SQLITE_NOTADB|file is not a database/i.test(message)) throw err;
+    client.close();
+    _shards.delete(safeName);
+    _shardLastAccess.delete(safeName);
+    const dbPath = path7.join(SHARDS_DIR, `${safeName}.db`);
+    if (existsSync7(dbPath)) {
+      const stat = statSync2(dbPath);
+      const stamp = (/* @__PURE__ */ new Date()).toISOString().replace(/[:.]/g, "-");
+      const archivedPath = path7.join(SHARDS_DIR, `${safeName}.db.broken-${stamp}`);
+      renameSync3(dbPath, archivedPath);
+      process.stderr.write(
+        `[shard-manager] Archived unreadable shard ${safeName}: ${archivedPath} (${stat.size} bytes, mtime ${stat.mtime.toISOString()})
+`
+      );
+    }
+    client = getShardClient(projectName);
+    await ensureShardSchema(client);
+    return client;
+  }
 }
 function evictLRU() {
   let oldest = null;
@@ -4277,7 +4304,7 @@ var init_store = __esm({
 
 // src/bin/exe-rename.ts
 init_employees();
-import { readFileSync as readFileSync5, writeFileSync as writeFileSync3, renameSync as renameSync3, unlinkSync as unlinkSync3, existsSync as existsSync8 } from "fs";
+import { readFileSync as readFileSync5, writeFileSync as writeFileSync3, renameSync as renameSync4, unlinkSync as unlinkSync3, existsSync as existsSync8 } from "fs";
 import { execSync as execSync3 } from "child_process";
 import path8 from "path";
 import { homedir } from "os";
@@ -4331,7 +4358,8 @@ async function renameEmployee(oldName, newName, opts = {}) {
     const originalName = employee.name;
     const originalPrompt = employee.systemPrompt;
     employee.name = newName;
-    employee.systemPrompt = personalizePrompt(originalPrompt, rosterOldName, newName);
+    if (originalPrompt) employee.systemPrompt = personalizePrompt(originalPrompt, rosterOldName, newName);
+    else delete employee.systemPrompt;
     await saveEmployees(employees, rosterPath);
     rollbackStack.push({
       description: "restore roster",
@@ -4349,14 +4377,14 @@ async function renameEmployee(oldName, newName, opts = {}) {
         /^(agent_id:\s*)\S+/m,
         `$1${newName}`
       );
-      renameSync3(oldIdentityPath, newIdentityPath);
+      renameSync4(oldIdentityPath, newIdentityPath);
       writeFileSync3(newIdentityPath, updatedContent, "utf-8");
       rollbackStack.push({
         description: "restore identity file",
         undo: () => {
           if (existsSync8(newIdentityPath)) {
             writeFileSync3(newIdentityPath, content, "utf-8");
-            renameSync3(newIdentityPath, oldIdentityPath);
+            renameSync4(newIdentityPath, oldIdentityPath);
           }
         }
       });
@@ -4365,12 +4393,12 @@ async function renameEmployee(oldName, newName, opts = {}) {
     const newAgentPath = path8.join(agentsDir, `${newName}.md`);
     if (existsSync8(oldAgentPath)) {
       const agentContent = readFileSync5(oldAgentPath, "utf-8");
-      renameSync3(oldAgentPath, newAgentPath);
+      renameSync4(oldAgentPath, newAgentPath);
       rollbackStack.push({
         description: "restore agent file",
         undo: () => {
           if (existsSync8(newAgentPath)) {
-            renameSync3(newAgentPath, oldAgentPath);
+            renameSync4(newAgentPath, oldAgentPath);
             writeFileSync3(oldAgentPath, agentContent, "utf-8");
           }
         }

package/dist/bin/exe-review.js

@@ -3264,7 +3264,7 @@ __export(shard_manager_exports, {
   shardExists: () => shardExists
 });
 import path7 from "path";
-import { existsSync as existsSync7, mkdirSync as mkdirSync2, readdirSync } from "fs";
+import { existsSync as existsSync7, mkdirSync as mkdirSync2, readdirSync, renameSync as renameSync3, statSync as statSync2 } from "fs";
 import { createClient as createClient2 } from "@libsql/client";
 function initShardManager(encryptionKey) {
   _encryptionKey = encryptionKey;
@@ -3286,7 +3286,7 @@ function getShardClient(projectName) {
   if (!_encryptionKey) {
     throw new Error("Shard manager not initialized. Call initShardManager() first.");
   }
-  const safeName = projectName.replace(/[^a-zA-Z0-9_-]/g, "_");
+  const safeName = safeShardName(projectName);
   if (!safeName || safeName === "unknown") {
     throw new Error(`Invalid project name for shard: "${projectName}" (resolved to "${safeName}")`);
   }
@@ -3308,9 +3308,12 @@ function getShardClient(projectName) {
   return client;
 }
 function shardExists(projectName) {
-  const safeName = projectName.replace(/[^a-zA-Z0-9_-]/g, "_");
+  const safeName = safeShardName(projectName);
   return existsSync7(path7.join(SHARDS_DIR, `${safeName}.db`));
 }
+function safeShardName(projectName) {
+  return projectName.replace(/[^a-zA-Z0-9_-]/g, "_");
+}
 function listShards() {
   if (!existsSync7(SHARDS_DIR)) return [];
   return readdirSync(SHARDS_DIR).filter((f) => f.endsWith(".db")).map((f) => f.replace(".db", ""));
@@ -3404,7 +3407,8 @@ async function ensureShardSchema(client) {
     "ALTER TABLE memories ADD COLUMN token_cost REAL",
     "ALTER TABLE memories ADD COLUMN audience TEXT",
     "ALTER TABLE memories ADD COLUMN language_type TEXT",
-    "ALTER TABLE memories ADD COLUMN parent_memory_id TEXT"
+    "ALTER TABLE memories ADD COLUMN parent_memory_id TEXT",
+    "ALTER TABLE memories ADD COLUMN deleted_at TEXT"
   ]) {
     try {
       await client.execute(col);
@@ -3500,9 +3504,32 @@ async function ensureShardSchema(client) {
   }
 }
 async function getReadyShardClient(projectName) {
-  const client = getShardClient(projectName);
-  await ensureShardSchema(client);
-  return client;
+  const safeName = safeShardName(projectName);
+  let client = getShardClient(projectName);
+  try {
+    await ensureShardSchema(client);
+    return client;
+  } catch (err) {
+    const message = err instanceof Error ? err.message : String(err);
+    if (!/SQLITE_NOTADB|file is not a database/i.test(message)) throw err;
+    client.close();
+    _shards.delete(safeName);
+    _shardLastAccess.delete(safeName);
+    const dbPath = path7.join(SHARDS_DIR, `${safeName}.db`);
+    if (existsSync7(dbPath)) {
+      const stat = statSync2(dbPath);
+      const stamp = (/* @__PURE__ */ new Date()).toISOString().replace(/[:.]/g, "-");
+      const archivedPath = path7.join(SHARDS_DIR, `${safeName}.db.broken-${stamp}`);
+      renameSync3(dbPath, archivedPath);
+      process.stderr.write(
+        `[shard-manager] Archived unreadable shard ${safeName}: ${archivedPath} (${stat.size} bytes, mtime ${stat.mtime.toISOString()})
+`
+      );
+    }
+    client = getShardClient(projectName);
+    await ensureShardSchema(client);
+    return client;
+  }
 }
 function evictLRU() {
   let oldest = null;

package/dist/bin/exe-search.js

@@ -3239,7 +3239,7 @@ __export(shard_manager_exports, {
   shardExists: () => shardExists
 });
 import path7 from "path";
-import { existsSync as existsSync7, mkdirSync as mkdirSync2, readdirSync } from "fs";
+import { existsSync as existsSync7, mkdirSync as mkdirSync2, readdirSync, renameSync as renameSync3, statSync as statSync2 } from "fs";
 import { createClient as createClient2 } from "@libsql/client";
 function initShardManager(encryptionKey) {
   _encryptionKey = encryptionKey;
@@ -3261,7 +3261,7 @@ function getShardClient(projectName) {
   if (!_encryptionKey) {
     throw new Error("Shard manager not initialized. Call initShardManager() first.");
   }
-  const safeName = projectName.replace(/[^a-zA-Z0-9_-]/g, "_");
+  const safeName = safeShardName(projectName);
   if (!safeName || safeName === "unknown") {
     throw new Error(`Invalid project name for shard: "${projectName}" (resolved to "${safeName}")`);
   }
@@ -3283,9 +3283,12 @@ function getShardClient(projectName) {
   return client;
 }
 function shardExists(projectName) {
-  const safeName = projectName.replace(/[^a-zA-Z0-9_-]/g, "_");
+  const safeName = safeShardName(projectName);
   return existsSync7(path7.join(SHARDS_DIR, `${safeName}.db`));
 }
+function safeShardName(projectName) {
+  return projectName.replace(/[^a-zA-Z0-9_-]/g, "_");
+}
 function listShards() {
   if (!existsSync7(SHARDS_DIR)) return [];
   return readdirSync(SHARDS_DIR).filter((f) => f.endsWith(".db")).map((f) => f.replace(".db", ""));
@@ -3379,7 +3382,8 @@ async function ensureShardSchema(client) {
     "ALTER TABLE memories ADD COLUMN token_cost REAL",
     "ALTER TABLE memories ADD COLUMN audience TEXT",
     "ALTER TABLE memories ADD COLUMN language_type TEXT",
-    "ALTER TABLE memories ADD COLUMN parent_memory_id TEXT"
+    "ALTER TABLE memories ADD COLUMN parent_memory_id TEXT",
+    "ALTER TABLE memories ADD COLUMN deleted_at TEXT"
   ]) {
     try {
       await client.execute(col);
@@ -3475,9 +3479,32 @@ async function ensureShardSchema(client) {
   }
 }
 async function getReadyShardClient(projectName) {
-  const client = getShardClient(projectName);
-  await ensureShardSchema(client);
-  return client;
+  const safeName = safeShardName(projectName);
+  let client = getShardClient(projectName);
+  try {
+    await ensureShardSchema(client);
+    return client;
+  } catch (err) {
+    const message = err instanceof Error ? err.message : String(err);
+    if (!/SQLITE_NOTADB|file is not a database/i.test(message)) throw err;
+    client.close();
+    _shards.delete(safeName);
+    _shardLastAccess.delete(safeName);
+    const dbPath = path7.join(SHARDS_DIR, `${safeName}.db`);
+    if (existsSync7(dbPath)) {
+      const stat = statSync2(dbPath);
+      const stamp = (/* @__PURE__ */ new Date()).toISOString().replace(/[:.]/g, "-");
+      const archivedPath = path7.join(SHARDS_DIR, `${safeName}.db.broken-${stamp}`);
+      renameSync3(dbPath, archivedPath);
+      process.stderr.write(
+        `[shard-manager] Archived unreadable shard ${safeName}: ${archivedPath} (${stat.size} bytes, mtime ${stat.mtime.toISOString()})
+`
+      );
+    }
+    client = getShardClient(projectName);
+    await ensureShardSchema(client);
+    return client;
+  }
 }
 function evictLRU() {
   let oldest = null;
@@ -4752,7 +4779,7 @@ __export(file_grep_exports, {
   grepProjectFiles: () => grepProjectFiles
 });
 import { execSync as execSync4 } from "child_process";
-import { readFileSync as readFileSync5, readdirSync as readdirSync2, statSync as statSync2, existsSync as existsSync9 } from "fs";
+import { readFileSync as readFileSync5, readdirSync as readdirSync2, statSync as statSync3, existsSync as existsSync9 } from "fs";
 import path10 from "path";
 import crypto2 from "crypto";
 function hasRipgrep() {
@@ -4869,7 +4896,7 @@ function grepWithNodeFs(pattern, projectRoot, patterns) {
   for (const filePath of files.slice(0, MAX_FILES)) {
     const absPath = path10.join(projectRoot, filePath);
     try {
-      const stat = statSync2(absPath);
+      const stat = statSync3(absPath);
       if (stat.size > MAX_FILE_SIZE) continue;
       const content = readFileSync5(absPath, "utf8");
       const lines = content.split("\n");