@askexenow/exe-os 0.9.37 → 0.9.39

package/dist/bin/exe-status.js

@@ -3272,7 +3272,7 @@ __export(shard_manager_exports, {
   shardExists: () => shardExists
 });
 import path7 from "path";
-import { existsSync as existsSync7, mkdirSync as mkdirSync2, readdirSync } from "fs";
+import { existsSync as existsSync7, mkdirSync as mkdirSync2, readdirSync, renameSync as renameSync3, statSync as statSync2 } from "fs";
 import { createClient as createClient2 } from "@libsql/client";
 function initShardManager(encryptionKey) {
   _encryptionKey = encryptionKey;
@@ -3294,7 +3294,7 @@ function getShardClient(projectName) {
   if (!_encryptionKey) {
     throw new Error("Shard manager not initialized. Call initShardManager() first.");
   }
-  const safeName = projectName.replace(/[^a-zA-Z0-9_-]/g, "_");
+  const safeName = safeShardName(projectName);
   if (!safeName || safeName === "unknown") {
     throw new Error(`Invalid project name for shard: "${projectName}" (resolved to "${safeName}")`);
   }
@@ -3316,9 +3316,12 @@ function getShardClient(projectName) {
   return client;
 }
 function shardExists(projectName) {
-  const safeName = projectName.replace(/[^a-zA-Z0-9_-]/g, "_");
+  const safeName = safeShardName(projectName);
   return existsSync7(path7.join(SHARDS_DIR, `${safeName}.db`));
 }
+function safeShardName(projectName) {
+  return projectName.replace(/[^a-zA-Z0-9_-]/g, "_");
+}
 function listShards() {
   if (!existsSync7(SHARDS_DIR)) return [];
   return readdirSync(SHARDS_DIR).filter((f) => f.endsWith(".db")).map((f) => f.replace(".db", ""));
@@ -3412,7 +3415,8 @@ async function ensureShardSchema(client) {
     "ALTER TABLE memories ADD COLUMN token_cost REAL",
     "ALTER TABLE memories ADD COLUMN audience TEXT",
     "ALTER TABLE memories ADD COLUMN language_type TEXT",
-    "ALTER TABLE memories ADD COLUMN parent_memory_id TEXT"
+    "ALTER TABLE memories ADD COLUMN parent_memory_id TEXT",
+    "ALTER TABLE memories ADD COLUMN deleted_at TEXT"
   ]) {
     try {
       await client.execute(col);
@@ -3508,9 +3512,32 @@ async function ensureShardSchema(client) {
   }
 }
 async function getReadyShardClient(projectName) {
-  const client = getShardClient(projectName);
-  await ensureShardSchema(client);
-  return client;
+  const safeName = safeShardName(projectName);
+  let client = getShardClient(projectName);
+  try {
+    await ensureShardSchema(client);
+    return client;
+  } catch (err) {
+    const message = err instanceof Error ? err.message : String(err);
+    if (!/SQLITE_NOTADB|file is not a database/i.test(message)) throw err;
+    client.close();
+    _shards.delete(safeName);
+    _shardLastAccess.delete(safeName);
+    const dbPath = path7.join(SHARDS_DIR, `${safeName}.db`);
+    if (existsSync7(dbPath)) {
+      const stat = statSync2(dbPath);
+      const stamp = (/* @__PURE__ */ new Date()).toISOString().replace(/[:.]/g, "-");
+      const archivedPath = path7.join(SHARDS_DIR, `${safeName}.db.broken-${stamp}`);
+      renameSync3(dbPath, archivedPath);
+      process.stderr.write(
+        `[shard-manager] Archived unreadable shard ${safeName}: ${archivedPath} (${stat.size} bytes, mtime ${stat.mtime.toISOString()})
+`
+      );
+    }
+    client = getShardClient(projectName);
+    await ensureShardSchema(client);
+    return client;
+  }
 }
 function evictLRU() {
   let oldest = null;
@@ -3731,7 +3758,7 @@ var init_platform_procedures = __esm({
         title: "MCP tools \u2014 wiki, documents, and content",
         domain: "tool-use",
         priority: "p1",
-        content: "create_wiki_page: create a wiki page in exe-wiki. list_wiki_pages: browse wiki pages. get_wiki_page: read a wiki page. update_wiki_page: edit a wiki page. ingest_document: import a file (PDF, MD, etc.) into memory as chunks. list_documents: browse ingested documents by workspace. purge_document: remove a document and its memory chunks. set_document_importance: adjust chunk importance scores. rerank_documents: re-score document relevance for a query."
+        content: "wiki: read/list wiki pages only. Direct wiki write tools are removed; wiki updates flow through raw-data ingestion/projection into the curated wiki store. Legacy aliases: list_wiki_pages/get_wiki_page. crm: read/list/get CRM records from exe-db. raw_data: read capped raw landing-pad events from exe-db with payload opt-in. ingest_document: import a file (PDF, MD, etc.) into memory as chunks. list_documents: browse ingested documents by workspace. purge_document: remove a document and its memory chunks. set_document_importance: adjust chunk importance scores. rerank_documents: re-score document relevance for a query."
       },
       {
         title: "MCP tools \u2014 system, operations, and admin",
@@ -3749,7 +3776,7 @@ var init_platform_procedures = __esm({
         title: "MCP tools \u2014 advanced (triggers, skills, orchestration)",
         domain: "tool-use",
         priority: "p1",
-        content: "create_trigger: set up a scheduled recurring agent job (cron). list_triggers: view active triggers. load_skill: load a slash-command skill dynamically. apply_starter_pack: import a pre-built behavior + identity pack for a role. export_orchestration: export full org state (tasks, behaviors, identities) as portable JSON. import_orchestration: import org state into a new instance. deploy_client: deploy a customer client instance. query_company_brain: unified RAG query across all company knowledge. create_reminder: set a text reminder (shown in boot brief). list_reminders: view pending reminders. complete_reminder: mark a reminder done. global_procedure: manage Layer 0 procedures (actions: store, list, deactivate). Legacy aliases: store_global_procedure, list_global_procedures, deactivate_global_procedure."
+        content: "create_trigger: set up a scheduled recurring agent job (cron). list_triggers: view active triggers. load_skill: load a slash-command skill dynamically. apply_starter_pack: import a pre-built behavior + identity pack for a role. export_orchestration: export full org state (tasks, behaviors, identities) as portable JSON. import_orchestration: import org state into a new instance. deploy_client: deploy a customer client instance. query_company_brain: unified RAG query across all company knowledge. create_reminder: set a text reminder (shown in boot brief). list_reminders: view pending reminders. complete_reminder: mark a reminder done. global_procedure: manage customer-owned company procedures (Layer 0; actions: store, list, deactivate). Legacy aliases: store_global_procedure, list_global_procedures, deactivate_global_procedure."
       }
     ];
     PLATFORM_PROCEDURE_TITLES = new Set(
@@ -4713,7 +4740,7 @@ var init_agent_config = __esm({
 });
 
 // src/lib/intercom-queue.ts
-import { readFileSync as readFileSync6, writeFileSync as writeFileSync4, renameSync as renameSync3, existsSync as existsSync9, mkdirSync as mkdirSync3 } from "fs";
+import { readFileSync as readFileSync6, writeFileSync as writeFileSync4, renameSync as renameSync4, existsSync as existsSync9, mkdirSync as mkdirSync3 } from "fs";
 import path10 from "path";
 import os7 from "os";
 var QUEUE_PATH, TTL_MS, INTERCOM_LOG;

package/dist/bin/exe-team.js

@@ -3261,7 +3261,7 @@ __export(shard_manager_exports, {
   shardExists: () => shardExists
 });
 import path7 from "path";
-import { existsSync as existsSync7, mkdirSync as mkdirSync2, readdirSync } from "fs";
+import { existsSync as existsSync7, mkdirSync as mkdirSync2, readdirSync, renameSync as renameSync3, statSync as statSync2 } from "fs";
 import { createClient as createClient2 } from "@libsql/client";
 function initShardManager(encryptionKey) {
   _encryptionKey = encryptionKey;
@@ -3283,7 +3283,7 @@ function getShardClient(projectName) {
   if (!_encryptionKey) {
     throw new Error("Shard manager not initialized. Call initShardManager() first.");
   }
-  const safeName = projectName.replace(/[^a-zA-Z0-9_-]/g, "_");
+  const safeName = safeShardName(projectName);
   if (!safeName || safeName === "unknown") {
     throw new Error(`Invalid project name for shard: "${projectName}" (resolved to "${safeName}")`);
   }
@@ -3305,9 +3305,12 @@ function getShardClient(projectName) {
   return client;
 }
 function shardExists(projectName) {
-  const safeName = projectName.replace(/[^a-zA-Z0-9_-]/g, "_");
+  const safeName = safeShardName(projectName);
   return existsSync7(path7.join(SHARDS_DIR, `${safeName}.db`));
 }
+function safeShardName(projectName) {
+  return projectName.replace(/[^a-zA-Z0-9_-]/g, "_");
+}
 function listShards() {
   if (!existsSync7(SHARDS_DIR)) return [];
   return readdirSync(SHARDS_DIR).filter((f) => f.endsWith(".db")).map((f) => f.replace(".db", ""));
@@ -3401,7 +3404,8 @@ async function ensureShardSchema(client) {
     "ALTER TABLE memories ADD COLUMN token_cost REAL",
     "ALTER TABLE memories ADD COLUMN audience TEXT",
     "ALTER TABLE memories ADD COLUMN language_type TEXT",
-    "ALTER TABLE memories ADD COLUMN parent_memory_id TEXT"
+    "ALTER TABLE memories ADD COLUMN parent_memory_id TEXT",
+    "ALTER TABLE memories ADD COLUMN deleted_at TEXT"
   ]) {
     try {
       await client.execute(col);
@@ -3497,9 +3501,32 @@ async function ensureShardSchema(client) {
   }
 }
 async function getReadyShardClient(projectName) {
-  const client = getShardClient(projectName);
-  await ensureShardSchema(client);
-  return client;
+  const safeName = safeShardName(projectName);
+  let client = getShardClient(projectName);
+  try {
+    await ensureShardSchema(client);
+    return client;
+  } catch (err) {
+    const message = err instanceof Error ? err.message : String(err);
+    if (!/SQLITE_NOTADB|file is not a database/i.test(message)) throw err;
+    client.close();
+    _shards.delete(safeName);
+    _shardLastAccess.delete(safeName);
+    const dbPath = path7.join(SHARDS_DIR, `${safeName}.db`);
+    if (existsSync7(dbPath)) {
+      const stat = statSync2(dbPath);
+      const stamp = (/* @__PURE__ */ new Date()).toISOString().replace(/[:.]/g, "-");
+      const archivedPath = path7.join(SHARDS_DIR, `${safeName}.db.broken-${stamp}`);
+      renameSync3(dbPath, archivedPath);
+      process.stderr.write(
+        `[shard-manager] Archived unreadable shard ${safeName}: ${archivedPath} (${stat.size} bytes, mtime ${stat.mtime.toISOString()})
+`
+      );
+    }
+    client = getShardClient(projectName);
+    await ensureShardSchema(client);
+    return client;
+  }
 }
 function evictLRU() {
   let oldest = null;
@@ -3720,7 +3747,7 @@ var init_platform_procedures = __esm({
         title: "MCP tools \u2014 wiki, documents, and content",
         domain: "tool-use",
         priority: "p1",
-        content: "create_wiki_page: create a wiki page in exe-wiki. list_wiki_pages: browse wiki pages. get_wiki_page: read a wiki page. update_wiki_page: edit a wiki page. ingest_document: import a file (PDF, MD, etc.) into memory as chunks. list_documents: browse ingested documents by workspace. purge_document: remove a document and its memory chunks. set_document_importance: adjust chunk importance scores. rerank_documents: re-score document relevance for a query."
+        content: "wiki: read/list wiki pages only. Direct wiki write tools are removed; wiki updates flow through raw-data ingestion/projection into the curated wiki store. Legacy aliases: list_wiki_pages/get_wiki_page. crm: read/list/get CRM records from exe-db. raw_data: read capped raw landing-pad events from exe-db with payload opt-in. ingest_document: import a file (PDF, MD, etc.) into memory as chunks. list_documents: browse ingested documents by workspace. purge_document: remove a document and its memory chunks. set_document_importance: adjust chunk importance scores. rerank_documents: re-score document relevance for a query."
       },
       {
         title: "MCP tools \u2014 system, operations, and admin",
@@ -3738,7 +3765,7 @@ var init_platform_procedures = __esm({
         title: "MCP tools \u2014 advanced (triggers, skills, orchestration)",
         domain: "tool-use",
         priority: "p1",
-        content: "create_trigger: set up a scheduled recurring agent job (cron). list_triggers: view active triggers. load_skill: load a slash-command skill dynamically. apply_starter_pack: import a pre-built behavior + identity pack for a role. export_orchestration: export full org state (tasks, behaviors, identities) as portable JSON. import_orchestration: import org state into a new instance. deploy_client: deploy a customer client instance. query_company_brain: unified RAG query across all company knowledge. create_reminder: set a text reminder (shown in boot brief). list_reminders: view pending reminders. complete_reminder: mark a reminder done. global_procedure: manage Layer 0 procedures (actions: store, list, deactivate). Legacy aliases: store_global_procedure, list_global_procedures, deactivate_global_procedure."
+        content: "create_trigger: set up a scheduled recurring agent job (cron). list_triggers: view active triggers. load_skill: load a slash-command skill dynamically. apply_starter_pack: import a pre-built behavior + identity pack for a role. export_orchestration: export full org state (tasks, behaviors, identities) as portable JSON. import_orchestration: import org state into a new instance. deploy_client: deploy a customer client instance. query_company_brain: unified RAG query across all company knowledge. create_reminder: set a text reminder (shown in boot brief). list_reminders: view pending reminders. complete_reminder: mark a reminder done. global_procedure: manage customer-owned company procedures (Layer 0; actions: store, list, deactivate). Legacy aliases: store_global_procedure, list_global_procedures, deactivate_global_procedure."
       }
     ];
     PLATFORM_PROCEDURE_TITLES = new Set(

package/dist/bin/git-sweep.js

@@ -6884,7 +6884,7 @@ __export(shard_manager_exports, {
   shardExists: () => shardExists
 });
 import path19 from "path";
-import { existsSync as existsSync16, mkdirSync as mkdirSync7, readdirSync as readdirSync4 } from "fs";
+import { existsSync as existsSync16, mkdirSync as mkdirSync7, readdirSync as readdirSync4, renameSync as renameSync4, statSync as statSync2 } from "fs";
 import { createClient as createClient2 } from "@libsql/client";
 function initShardManager(encryptionKey) {
   _encryptionKey = encryptionKey;
@@ -6906,7 +6906,7 @@ function getShardClient(projectName2) {
   if (!_encryptionKey) {
     throw new Error("Shard manager not initialized. Call initShardManager() first.");
   }
-  const safeName = projectName2.replace(/[^a-zA-Z0-9_-]/g, "_");
+  const safeName = safeShardName(projectName2);
   if (!safeName || safeName === "unknown") {
     throw new Error(`Invalid project name for shard: "${projectName2}" (resolved to "${safeName}")`);
   }
@@ -6928,9 +6928,12 @@ function getShardClient(projectName2) {
   return client;
 }
 function shardExists(projectName2) {
-  const safeName = projectName2.replace(/[^a-zA-Z0-9_-]/g, "_");
+  const safeName = safeShardName(projectName2);
   return existsSync16(path19.join(SHARDS_DIR, `${safeName}.db`));
 }
+function safeShardName(projectName2) {
+  return projectName2.replace(/[^a-zA-Z0-9_-]/g, "_");
+}
 function listShards() {
   if (!existsSync16(SHARDS_DIR)) return [];
   return readdirSync4(SHARDS_DIR).filter((f) => f.endsWith(".db")).map((f) => f.replace(".db", ""));
@@ -7024,7 +7027,8 @@ async function ensureShardSchema(client) {
     "ALTER TABLE memories ADD COLUMN token_cost REAL",
     "ALTER TABLE memories ADD COLUMN audience TEXT",
     "ALTER TABLE memories ADD COLUMN language_type TEXT",
-    "ALTER TABLE memories ADD COLUMN parent_memory_id TEXT"
+    "ALTER TABLE memories ADD COLUMN parent_memory_id TEXT",
+    "ALTER TABLE memories ADD COLUMN deleted_at TEXT"
   ]) {
     try {
       await client.execute(col);
@@ -7120,9 +7124,32 @@ async function ensureShardSchema(client) {
   }
 }
 async function getReadyShardClient(projectName2) {
-  const client = getShardClient(projectName2);
-  await ensureShardSchema(client);
-  return client;
+  const safeName = safeShardName(projectName2);
+  let client = getShardClient(projectName2);
+  try {
+    await ensureShardSchema(client);
+    return client;
+  } catch (err) {
+    const message = err instanceof Error ? err.message : String(err);
+    if (!/SQLITE_NOTADB|file is not a database/i.test(message)) throw err;
+    client.close();
+    _shards.delete(safeName);
+    _shardLastAccess.delete(safeName);
+    const dbPath = path19.join(SHARDS_DIR, `${safeName}.db`);
+    if (existsSync16(dbPath)) {
+      const stat = statSync2(dbPath);
+      const stamp = (/* @__PURE__ */ new Date()).toISOString().replace(/[:.]/g, "-");
+      const archivedPath = path19.join(SHARDS_DIR, `${safeName}.db.broken-${stamp}`);
+      renameSync4(dbPath, archivedPath);
+      process.stderr.write(
+        `[shard-manager] Archived unreadable shard ${safeName}: ${archivedPath} (${stat.size} bytes, mtime ${stat.mtime.toISOString()})
+`
+      );
+    }
+    client = getShardClient(projectName2);
+    await ensureShardSchema(client);
+    return client;
+  }
 }
 function evictLRU() {
   let oldest = null;
@@ -7343,7 +7370,7 @@ var init_platform_procedures = __esm({
         title: "MCP tools \u2014 wiki, documents, and content",
         domain: "tool-use",
         priority: "p1",
-        content: "create_wiki_page: create a wiki page in exe-wiki. list_wiki_pages: browse wiki pages. get_wiki_page: read a wiki page. update_wiki_page: edit a wiki page. ingest_document: import a file (PDF, MD, etc.) into memory as chunks. list_documents: browse ingested documents by workspace. purge_document: remove a document and its memory chunks. set_document_importance: adjust chunk importance scores. rerank_documents: re-score document relevance for a query."
+        content: "wiki: read/list wiki pages only. Direct wiki write tools are removed; wiki updates flow through raw-data ingestion/projection into the curated wiki store. Legacy aliases: list_wiki_pages/get_wiki_page. crm: read/list/get CRM records from exe-db. raw_data: read capped raw landing-pad events from exe-db with payload opt-in. ingest_document: import a file (PDF, MD, etc.) into memory as chunks. list_documents: browse ingested documents by workspace. purge_document: remove a document and its memory chunks. set_document_importance: adjust chunk importance scores. rerank_documents: re-score document relevance for a query."
       },
       {
         title: "MCP tools \u2014 system, operations, and admin",
@@ -7361,7 +7388,7 @@ var init_platform_procedures = __esm({
         title: "MCP tools \u2014 advanced (triggers, skills, orchestration)",
         domain: "tool-use",
         priority: "p1",
-        content: "create_trigger: set up a scheduled recurring agent job (cron). list_triggers: view active triggers. load_skill: load a slash-command skill dynamically. apply_starter_pack: import a pre-built behavior + identity pack for a role. export_orchestration: export full org state (tasks, behaviors, identities) as portable JSON. import_orchestration: import org state into a new instance. deploy_client: deploy a customer client instance. query_company_brain: unified RAG query across all company knowledge. create_reminder: set a text reminder (shown in boot brief). list_reminders: view pending reminders. complete_reminder: mark a reminder done. global_procedure: manage Layer 0 procedures (actions: store, list, deactivate). Legacy aliases: store_global_procedure, list_global_procedures, deactivate_global_procedure."
+        content: "create_trigger: set up a scheduled recurring agent job (cron). list_triggers: view active triggers. load_skill: load a slash-command skill dynamically. apply_starter_pack: import a pre-built behavior + identity pack for a role. export_orchestration: export full org state (tasks, behaviors, identities) as portable JSON. import_orchestration: import org state into a new instance. deploy_client: deploy a customer client instance. query_company_brain: unified RAG query across all company knowledge. create_reminder: set a text reminder (shown in boot brief). list_reminders: view pending reminders. complete_reminder: mark a reminder done. global_procedure: manage customer-owned company procedures (Layer 0; actions: store, list, deactivate). Legacy aliases: store_global_procedure, list_global_procedures, deactivate_global_procedure."
       }
     ];
     PLATFORM_PROCEDURE_TITLES = new Set(

package/dist/bin/graph-backfill.js

@@ -2601,7 +2601,7 @@ __export(shard_manager_exports, {
   shardExists: () => shardExists
 });
 import path7 from "path";
-import { existsSync as existsSync7, mkdirSync as mkdirSync2, readdirSync } from "fs";
+import { existsSync as existsSync7, mkdirSync as mkdirSync2, readdirSync, renameSync as renameSync3, statSync as statSync2 } from "fs";
 import { createClient as createClient2 } from "@libsql/client";
 function initShardManager(encryptionKey) {
   _encryptionKey = encryptionKey;
@@ -2623,7 +2623,7 @@ function getShardClient(projectName) {
   if (!_encryptionKey) {
     throw new Error("Shard manager not initialized. Call initShardManager() first.");
   }
-  const safeName = projectName.replace(/[^a-zA-Z0-9_-]/g, "_");
+  const safeName = safeShardName(projectName);
   if (!safeName || safeName === "unknown") {
     throw new Error(`Invalid project name for shard: "${projectName}" (resolved to "${safeName}")`);
   }
@@ -2645,9 +2645,12 @@ function getShardClient(projectName) {
   return client;
 }
 function shardExists(projectName) {
-  const safeName = projectName.replace(/[^a-zA-Z0-9_-]/g, "_");
+  const safeName = safeShardName(projectName);
   return existsSync7(path7.join(SHARDS_DIR, `${safeName}.db`));
 }
+function safeShardName(projectName) {
+  return projectName.replace(/[^a-zA-Z0-9_-]/g, "_");
+}
 function listShards() {
   if (!existsSync7(SHARDS_DIR)) return [];
   return readdirSync(SHARDS_DIR).filter((f) => f.endsWith(".db")).map((f) => f.replace(".db", ""));
@@ -2741,7 +2744,8 @@ async function ensureShardSchema(client) {
     "ALTER TABLE memories ADD COLUMN token_cost REAL",
     "ALTER TABLE memories ADD COLUMN audience TEXT",
     "ALTER TABLE memories ADD COLUMN language_type TEXT",
-    "ALTER TABLE memories ADD COLUMN parent_memory_id TEXT"
+    "ALTER TABLE memories ADD COLUMN parent_memory_id TEXT",
+    "ALTER TABLE memories ADD COLUMN deleted_at TEXT"
   ]) {
     try {
       await client.execute(col);
@@ -2837,9 +2841,32 @@ async function ensureShardSchema(client) {
   }
 }
 async function getReadyShardClient(projectName) {
-  const client = getShardClient(projectName);
-  await ensureShardSchema(client);
-  return client;
+  const safeName = safeShardName(projectName);
+  let client = getShardClient(projectName);
+  try {
+    await ensureShardSchema(client);
+    return client;
+  } catch (err) {
+    const message = err instanceof Error ? err.message : String(err);
+    if (!/SQLITE_NOTADB|file is not a database/i.test(message)) throw err;
+    client.close();
+    _shards.delete(safeName);
+    _shardLastAccess.delete(safeName);
+    const dbPath = path7.join(SHARDS_DIR, `${safeName}.db`);
+    if (existsSync7(dbPath)) {
+      const stat = statSync2(dbPath);
+      const stamp = (/* @__PURE__ */ new Date()).toISOString().replace(/[:.]/g, "-");
+      const archivedPath = path7.join(SHARDS_DIR, `${safeName}.db.broken-${stamp}`);
+      renameSync3(dbPath, archivedPath);
+      process.stderr.write(
+        `[shard-manager] Archived unreadable shard ${safeName}: ${archivedPath} (${stat.size} bytes, mtime ${stat.mtime.toISOString()})
+`
+      );
+    }
+    client = getShardClient(projectName);
+    await ensureShardSchema(client);
+    return client;
+  }
 }
 function evictLRU() {
   let oldest = null;
@@ -3060,7 +3087,7 @@ var init_platform_procedures = __esm({
         title: "MCP tools \u2014 wiki, documents, and content",
         domain: "tool-use",
         priority: "p1",
-        content: "create_wiki_page: create a wiki page in exe-wiki. list_wiki_pages: browse wiki pages. get_wiki_page: read a wiki page. update_wiki_page: edit a wiki page. ingest_document: import a file (PDF, MD, etc.) into memory as chunks. list_documents: browse ingested documents by workspace. purge_document: remove a document and its memory chunks. set_document_importance: adjust chunk importance scores. rerank_documents: re-score document relevance for a query."
+        content: "wiki: read/list wiki pages only. Direct wiki write tools are removed; wiki updates flow through raw-data ingestion/projection into the curated wiki store. Legacy aliases: list_wiki_pages/get_wiki_page. crm: read/list/get CRM records from exe-db. raw_data: read capped raw landing-pad events from exe-db with payload opt-in. ingest_document: import a file (PDF, MD, etc.) into memory as chunks. list_documents: browse ingested documents by workspace. purge_document: remove a document and its memory chunks. set_document_importance: adjust chunk importance scores. rerank_documents: re-score document relevance for a query."
       },
       {
         title: "MCP tools \u2014 system, operations, and admin",
@@ -3078,7 +3105,7 @@ var init_platform_procedures = __esm({
         title: "MCP tools \u2014 advanced (triggers, skills, orchestration)",
         domain: "tool-use",
         priority: "p1",
-        content: "create_trigger: set up a scheduled recurring agent job (cron). list_triggers: view active triggers. load_skill: load a slash-command skill dynamically. apply_starter_pack: import a pre-built behavior + identity pack for a role. export_orchestration: export full org state (tasks, behaviors, identities) as portable JSON. import_orchestration: import org state into a new instance. deploy_client: deploy a customer client instance. query_company_brain: unified RAG query across all company knowledge. create_reminder: set a text reminder (shown in boot brief). list_reminders: view pending reminders. complete_reminder: mark a reminder done. global_procedure: manage Layer 0 procedures (actions: store, list, deactivate). Legacy aliases: store_global_procedure, list_global_procedures, deactivate_global_procedure."
+        content: "create_trigger: set up a scheduled recurring agent job (cron). list_triggers: view active triggers. load_skill: load a slash-command skill dynamically. apply_starter_pack: import a pre-built behavior + identity pack for a role. export_orchestration: export full org state (tasks, behaviors, identities) as portable JSON. import_orchestration: import org state into a new instance. deploy_client: deploy a customer client instance. query_company_brain: unified RAG query across all company knowledge. create_reminder: set a text reminder (shown in boot brief). list_reminders: view pending reminders. complete_reminder: mark a reminder done. global_procedure: manage customer-owned company procedures (Layer 0; actions: store, list, deactivate). Legacy aliases: store_global_procedure, list_global_procedures, deactivate_global_procedure."
       }
     ];
     PLATFORM_PROCEDURE_TITLES = new Set(

package/dist/bin/graph-export.js

@@ -3250,7 +3250,7 @@ __export(shard_manager_exports, {
   shardExists: () => shardExists
 });
 import path7 from "path";
-import { existsSync as existsSync7, mkdirSync as mkdirSync2, readdirSync } from "fs";
+import { existsSync as existsSync7, mkdirSync as mkdirSync2, readdirSync, renameSync as renameSync3, statSync as statSync2 } from "fs";
 import { createClient as createClient2 } from "@libsql/client";
 function initShardManager(encryptionKey) {
   _encryptionKey = encryptionKey;
@@ -3272,7 +3272,7 @@ function getShardClient(projectName) {
   if (!_encryptionKey) {
     throw new Error("Shard manager not initialized. Call initShardManager() first.");
   }
-  const safeName = projectName.replace(/[^a-zA-Z0-9_-]/g, "_");
+  const safeName = safeShardName(projectName);
   if (!safeName || safeName === "unknown") {
     throw new Error(`Invalid project name for shard: "${projectName}" (resolved to "${safeName}")`);
   }
@@ -3294,9 +3294,12 @@ function getShardClient(projectName) {
   return client;
 }
 function shardExists(projectName) {
-  const safeName = projectName.replace(/[^a-zA-Z0-9_-]/g, "_");
+  const safeName = safeShardName(projectName);
   return existsSync7(path7.join(SHARDS_DIR, `${safeName}.db`));
 }
+function safeShardName(projectName) {
+  return projectName.replace(/[^a-zA-Z0-9_-]/g, "_");
+}
 function listShards() {
   if (!existsSync7(SHARDS_DIR)) return [];
   return readdirSync(SHARDS_DIR).filter((f) => f.endsWith(".db")).map((f) => f.replace(".db", ""));
@@ -3390,7 +3393,8 @@ async function ensureShardSchema(client) {
     "ALTER TABLE memories ADD COLUMN token_cost REAL",
     "ALTER TABLE memories ADD COLUMN audience TEXT",
     "ALTER TABLE memories ADD COLUMN language_type TEXT",
-    "ALTER TABLE memories ADD COLUMN parent_memory_id TEXT"
+    "ALTER TABLE memories ADD COLUMN parent_memory_id TEXT",
+    "ALTER TABLE memories ADD COLUMN deleted_at TEXT"
   ]) {
     try {
       await client.execute(col);
@@ -3486,9 +3490,32 @@ async function ensureShardSchema(client) {
   }
 }
 async function getReadyShardClient(projectName) {
-  const client = getShardClient(projectName);
-  await ensureShardSchema(client);
-  return client;
+  const safeName = safeShardName(projectName);
+  let client = getShardClient(projectName);
+  try {
+    await ensureShardSchema(client);
+    return client;
+  } catch (err) {
+    const message = err instanceof Error ? err.message : String(err);
+    if (!/SQLITE_NOTADB|file is not a database/i.test(message)) throw err;
+    client.close();
+    _shards.delete(safeName);
+    _shardLastAccess.delete(safeName);
+    const dbPath = path7.join(SHARDS_DIR, `${safeName}.db`);
+    if (existsSync7(dbPath)) {
+      const stat = statSync2(dbPath);
+      const stamp = (/* @__PURE__ */ new Date()).toISOString().replace(/[:.]/g, "-");
+      const archivedPath = path7.join(SHARDS_DIR, `${safeName}.db.broken-${stamp}`);
+      renameSync3(dbPath, archivedPath);
+      process.stderr.write(
+        `[shard-manager] Archived unreadable shard ${safeName}: ${archivedPath} (${stat.size} bytes, mtime ${stat.mtime.toISOString()})
+`
+      );
+    }
+    client = getShardClient(projectName);
+    await ensureShardSchema(client);
+    return client;
+  }
 }
 function evictLRU() {
   let oldest = null;
@@ -3709,7 +3736,7 @@ var init_platform_procedures = __esm({
         title: "MCP tools \u2014 wiki, documents, and content",
         domain: "tool-use",
         priority: "p1",
-        content: "create_wiki_page: create a wiki page in exe-wiki. list_wiki_pages: browse wiki pages. get_wiki_page: read a wiki page. update_wiki_page: edit a wiki page. ingest_document: import a file (PDF, MD, etc.) into memory as chunks. list_documents: browse ingested documents by workspace. purge_document: remove a document and its memory chunks. set_document_importance: adjust chunk importance scores. rerank_documents: re-score document relevance for a query."
+        content: "wiki: read/list wiki pages only. Direct wiki write tools are removed; wiki updates flow through raw-data ingestion/projection into the curated wiki store. Legacy aliases: list_wiki_pages/get_wiki_page. crm: read/list/get CRM records from exe-db. raw_data: read capped raw landing-pad events from exe-db with payload opt-in. ingest_document: import a file (PDF, MD, etc.) into memory as chunks. list_documents: browse ingested documents by workspace. purge_document: remove a document and its memory chunks. set_document_importance: adjust chunk importance scores. rerank_documents: re-score document relevance for a query."
       },
       {
         title: "MCP tools \u2014 system, operations, and admin",
@@ -3727,7 +3754,7 @@ var init_platform_procedures = __esm({
         title: "MCP tools \u2014 advanced (triggers, skills, orchestration)",
         domain: "tool-use",
         priority: "p1",
-        content: "create_trigger: set up a scheduled recurring agent job (cron). list_triggers: view active triggers. load_skill: load a slash-command skill dynamically. apply_starter_pack: import a pre-built behavior + identity pack for a role. export_orchestration: export full org state (tasks, behaviors, identities) as portable JSON. import_orchestration: import org state into a new instance. deploy_client: deploy a customer client instance. query_company_brain: unified RAG query across all company knowledge. create_reminder: set a text reminder (shown in boot brief). list_reminders: view pending reminders. complete_reminder: mark a reminder done. global_procedure: manage Layer 0 procedures (actions: store, list, deactivate). Legacy aliases: store_global_procedure, list_global_procedures, deactivate_global_procedure."
+        content: "create_trigger: set up a scheduled recurring agent job (cron). list_triggers: view active triggers. load_skill: load a slash-command skill dynamically. apply_starter_pack: import a pre-built behavior + identity pack for a role. export_orchestration: export full org state (tasks, behaviors, identities) as portable JSON. import_orchestration: import org state into a new instance. deploy_client: deploy a customer client instance. query_company_brain: unified RAG query across all company knowledge. create_reminder: set a text reminder (shown in boot brief). list_reminders: view pending reminders. complete_reminder: mark a reminder done. global_procedure: manage customer-owned company procedures (Layer 0; actions: store, list, deactivate). Legacy aliases: store_global_procedure, list_global_procedures, deactivate_global_procedure."
       }
     ];
     PLATFORM_PROCEDURE_TITLES = new Set(

package/dist/bin/install.js

@@ -368,7 +368,8 @@ function isMultiInstance(agentName, employees) {
   return MULTI_INSTANCE_ROLES.has(emp.role.toLowerCase());
 }
 function addEmployee(employees, employee) {
-  const normalized = { ...employee, name: employee.name.toLowerCase() };
+  const { systemPrompt: _legacyPrompt, ...rest } = employee;
+  const normalized = { ...rest, name: employee.name.toLowerCase() };
   if (employees.some((e) => e.name.toLowerCase() === normalized.name)) {
     throw new Error(`Employee '${normalized.name}' already exists`);
   }
@@ -685,6 +686,60 @@ name: ${skillName}
   await writeFile3(destPath, content);
   return true;
 }
+function readJsonFile(filePath) {
+  try {
+    return JSON.parse(readFileSync5(filePath, "utf-8"));
+  } catch {
+    return null;
+  }
+}
+function findAncestorMcpJsons(startDir, homeDir) {
+  const files = [];
+  let dir = path6.resolve(startDir);
+  const root = path6.parse(dir).root;
+  const stop = path6.resolve(homeDir);
+  while (dir !== root) {
+    const candidate = path6.join(dir, ".mcp.json");
+    if (existsSync7(candidate)) files.push(candidate);
+    if (dir === stop) break;
+    dir = path6.dirname(dir);
+  }
+  return files;
+}
+function pathApplies(projectPath, cwd) {
+  const project = path6.resolve(projectPath);
+  const current = path6.resolve(cwd);
+  return current === project || current.startsWith(project + path6.sep);
+}
+function detectMcpNameCollisions(homeDir = os5.homedir(), cwd = process.cwd()) {
+  const claudeJsonPath = path6.join(homeDir, ".claude.json");
+  if (!existsSync7(claudeJsonPath)) return [];
+  const claudeJson = readJsonFile(claudeJsonPath);
+  if (!claudeJson?.projects) return [];
+  const collisions = [];
+  const mcpJsons = findAncestorMcpJsons(cwd, homeDir);
+  if (mcpJsons.length === 0) return [];
+  for (const [projectPath, projectConfig] of Object.entries(claudeJson.projects)) {
+    if (!pathApplies(projectPath, cwd)) continue;
+    const projectServerNames = new Set(Object.keys(projectConfig.mcpServers ?? {}));
+    if (projectServerNames.size === 0) continue;
+    const enabled = new Set(projectConfig.enabledMcpjsonServers ?? []);
+    for (const mcpJsonPath of mcpJsons) {
+      const mcpJson = readJsonFile(mcpJsonPath);
+      const mcpServerNames = Object.keys(mcpJson?.mcpServers ?? {});
+      for (const serverName of mcpServerNames) {
+        if (!projectServerNames.has(serverName)) continue;
+        collisions.push({
+          mcpJsonPath,
+          projectPath,
+          serverName,
+          disabledInMcpJson: !enabled.has(serverName)
+        });
+      }
+    }
+  }
+  return collisions;
+}
 async function registerMcpServer(packageRoot, homeDir = os5.homedir()) {
   const claudeJsonPath = path6.join(homeDir, ".claude.json");
   let claudeJson = {};
@@ -713,12 +768,26 @@ async function registerMcpServer(packageRoot, homeDir = os5.homedir()) {
   if (osMatches) {
     await cleanSettingsJsonMcp(path6.join(homeDir, ".claude", "settings.json"));
     await migratePermissionsToExeOs(path6.join(homeDir, ".claude", "settings.json"));
+    const collisions2 = detectMcpNameCollisions(homeDir, packageRoot).filter((c) => c.serverName === MCP_PRIMARY_KEY || c.serverName === MCP_LEGACY_KEY);
+    for (const c of collisions2) {
+      process.stderr.write(
+        `exe-os: WARNING Claude Code MCP name collision: ${c.serverName} exists in ${c.mcpJsonPath} and ~/.claude.json project ${c.projectPath}. Remove or rename the .mcp.json entry if tools do not surface.
+`
+      );
+    }
     return false;
   }
   claudeJson.mcpServers[MCP_PRIMARY_KEY] = newEntry;
   await writeFile3(claudeJsonPath, JSON.stringify(claudeJson, null, 2) + "\n");
   await cleanSettingsJsonMcp(path6.join(homeDir, ".claude", "settings.json"));
   await migratePermissionsToExeOs(path6.join(homeDir, ".claude", "settings.json"));
+  const collisions = detectMcpNameCollisions(homeDir, packageRoot).filter((c) => c.serverName === MCP_PRIMARY_KEY || c.serverName === MCP_LEGACY_KEY);
+  for (const c of collisions) {
+    process.stderr.write(
+      `exe-os: WARNING Claude Code MCP name collision: ${c.serverName} exists in ${c.mcpJsonPath} and ~/.claude.json project ${c.projectPath}. Remove or rename the .mcp.json entry if tools do not surface.
+`
+    );
+  }
   return true;
 }
 async function cleanSettingsJsonMcp(settingsPath) {
@@ -1020,8 +1089,6 @@ async function mergeHooks(packageRoot, homeDir = os5.homedir()) {
     "purge_document",
     "rerank_documents",
     "set_document_importance",
-    "create_wiki_page",
-    "update_wiki_page",
     "get_wiki_page",
     "list_wiki_pages",
     // System