@aroman22/codegraph-vba-darwin-arm64 1.5.1 → 1.6.0

package/lib/dist/mcp/daemon.js

@@ -75,6 +75,7 @@ var __importStar = (this && this.__importStar) || (function () {
 })();
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.MAX_HELLO_LINE_BYTES = exports.Daemon = void 0;
+exports.finalizeDaemonExit = finalizeDaemonExit;
 exports.tryAcquireDaemonLock = tryAcquireDaemonLock;
 exports.acquireLockViaExclusiveOpen = acquireLockViaExclusiveOpen;
 exports.clearStaleDaemonLock = clearStaleDaemonLock;
@@ -102,6 +103,40 @@ const DEFAULT_IDLE_TIMEOUT_MS = 300_000;
  * Set generously so a real but momentarily-idle session isn't reaped mid-use.
  */
 const DEFAULT_MAX_IDLE_MS = 1_800_000; // 30 min
+/**
+ * Windows-only shutdown backstop. On Windows, calling `process.exit()` while a
+ * recursive `fs.watch` handle is still tearing down aborts the process with a
+ * libuv `UV_HANDLE_CLOSING` assertion (`0xC0000409`) — reproducible whenever the
+ * watched tree contains a nested repo (submodule / embedded clone), since that's
+ * what keeps a watch active at shutdown. The fix is to let the event loop drain
+ * so libuv finishes closing those handles, then exit naturally; this timer only
+ * force-exits if some unexpected handle keeps the loop alive past the grace
+ * window. Kept short so shutdown stays snappy in that fallback. See
+ * `finalizeDaemonExit`.
+ */
+const DAEMON_SHUTDOWN_BACKSTOP_MS = 2_000;
+/**
+ * Finalize daemon shutdown. On POSIX, exit immediately — it's clean and fast.
+ * On Windows, do NOT force an exit while watchers may still be closing (that
+ * trips the libuv assertion above); instead mark success and let the loop drain
+ * to a natural exit, with an UNREF'd backstop that force-exits only if a stray
+ * handle would otherwise hang shutdown. Pure and platform-injected so both
+ * branches are unit-testable off-Windows. Returns the backstop timer (Windows)
+ * so callers/tests can clear it.
+ */
+function finalizeDaemonExit(platform, exit) {
+    if (platform === 'win32') {
+        process.exitCode = 0;
+        const backstop = setTimeout(() => exit(0), DAEMON_SHUTDOWN_BACKSTOP_MS);
+        // Unref so it never keeps the loop alive: a natural drain (watchers closed,
+        // nothing else pending) exits before it fires; it only fires when some other
+        // handle is keeping the loop running, which is exactly when we need it.
+        backstop.unref?.();
+        return backstop;
+    }
+    exit(0);
+    return null;
+}
 /** How often the daemon sweeps connected clients for a dead peer process (#692). */
 const DEFAULT_CLIENT_SWEEP_MS = 30_000;
 /** How long the daemon waits for the optional client-hello before proceeding without it. */
@@ -297,7 +332,10 @@ class Daemon {
             }
             catch { /* may already be gone */ }
         }
-        process.exit(0);
+        // POSIX exits here; Windows drains first (engine.stop() above began closing
+        // the file watcher, and exiting mid-teardown aborts the process). See
+        // finalizeDaemonExit / DAEMON_SHUTDOWN_BACKSTOP_MS.
+        finalizeDaemonExit(process.platform, (code) => process.exit(code));
     }
     handleConnection(socket) {
         // Hello first so the proxy can verify versions before piping any
@@ -366,9 +404,11 @@ class Daemon {
     /**
      * Defense-in-depth against a daemon that outlives its clients (#692), for the
      * cases the refcount + idle timer miss because a socket close never arrives:
-     *   - **Inactivity backstop:** exit if no inbound traffic for `maxIdleMs` while
-     *     clients are still (nominally) connected. A phantom client sends nothing,
-     *     so it can't pin the daemon past this window.
+     *   - **Inactivity backstop:** after `maxIdleMs` with no inbound traffic, reap
+     *     the daemon — but ONLY if no connected client can be proven alive (see
+     *     {@link backstopShouldExit}). This is the sole phantom class the sweep
+     *     below can't catch: a client whose client-hello never arrived, so we have
+     *     no pid to check.
      *   - **Liveness sweep:** drop any client whose peer process has died (per the
      *     client-hello pids), which re-arms the idle timer once the last real
      *     client is gone. Catches a dead peer within one sweep instead of waiting
@@ -380,11 +420,8 @@ class Daemon {
         if (this.maxIdleMs > 0) {
             const tick = Math.min(this.maxIdleMs, 60_000);
             this.maxIdleTimer = setInterval(() => {
-                if (this.stopping || this.clients.size === 0)
-                    return; // idle timer owns the no-client case
-                if (Date.now() - this.lastActivityAt >= this.maxIdleMs) {
+                if (this.backstopShouldExit(isProcessAlive))
                     void this.stop('inactivity backstop');
-                }
             }, tick);
             this.maxIdleTimer.unref?.();
         }
@@ -394,6 +431,39 @@ class Daemon {
             this.clientSweepTimer.unref?.();
         }
     }
+    /**
+     * Decide whether the inactivity backstop should reap the daemon right now.
+     * Public + `isAlive`-injected for deterministic tests; the timer calls it each
+     * tick with the real liveness probe.
+     *
+     * The backstop exists ONLY to catch a **phantom** client (#692) — one counted
+     * but actually gone, whose socket-close was never delivered. It must never
+     * reap a **live-but-quiet** session (connected, alive peer, just not querying):
+     * doing so silently severed the shared daemon and degraded that session — and
+     * any others sharing it — to an in-process engine. `lastActivityAt` only tracks
+     * inbound query bytes, and MCP has no keepalive, so a genuinely-live session
+     * trips the raw inactivity window after ~30 min of not being queried.
+     *
+     * So: once the inactivity window elapses, drop provably-dead peers (the same
+     * check the periodic sweep runs), then reap the daemon only when NOT ONE
+     * remaining client can be proven alive — i.e. every client left is an
+     * unknown-pid connection the sweep can't verify. A single provably-alive
+     * client keeps the daemon up. Has the sweep's side effect (drops dead peers).
+     */
+    backstopShouldExit(isAlive) {
+        if (this.stopping || this.clients.size === 0)
+            return false; // idle timer owns the no-client case
+        if (Date.now() - this.lastActivityAt < this.maxIdleMs)
+            return false; // still within the window
+        this.reapDeadClients(isAlive);
+        if (this.clients.size === 0)
+            return false; // sweep cleared them — idle timer takes over
+        const anyProvablyAlive = [...this.clients].some((session) => {
+            const peers = this.clientPeers.get(session);
+            return peers != null && peers.pid !== null && !peerIsDead(peers, isAlive);
+        });
+        return !anyProvablyAlive;
+    }
     /**
      * Drop every connected client whose peer process is gone. Returns the count
      * reaped. `isAlive` is injected for testing. Clients with unknown pids (no
@@ -721,10 +791,27 @@ function readClientHello(socket) {
             if (settled)
                 return;
             settled = true;
+            // PAUSE before detaching: removing the last 'data' listener does NOT
+            // stop a flowing stream, so bytes arriving (or unshifted) in the gap
+            // between this handler and the session transport attaching were emitted
+            // to zero listeners and silently DISCARDED — and the listener swap left
+            // the socket's flow state wedged, never delivering to the new listener.
+            // A proxy whose client-hello arrived glued to the initialize hit this
+            // ~1-in-5 under load: the daemon answered nothing for the whole session
+            // (the #662 test flake, and real dead sessions behind it). Paused, the
+            // unshifted tail and any new bytes buffer; SocketTransport.start()
+            // resumes explicitly.
+            try {
+                socket.pause();
+            }
+            catch { /* stream already gone */ }
             socket.removeListener('data', onData);
             socket.removeListener('error', onEnd);
             socket.removeListener('close', onEnd);
             clearTimeout(timer);
+            if (process.env.CODEGRAPH_MCP_DEBUG) {
+                process.stderr.write(`[mcp-debug] clientHello finish pid=${String(peers.pid)} putBack=${putBack ? putBack.length : 0} flowing=${String(socket.readableFlowing)}\n`);
+            }
             if (putBack && putBack.length > 0 && !socket.destroyed) {
                 try {
                     socket.unshift(putBack);
@@ -760,7 +847,12 @@ function readClientHello(socket) {
             }
         };
         const onEnd = () => finish({ pid: null, hostPid: null });
-        const timer = setTimeout(() => finish({ pid: null, hostPid: null }), CLIENT_HELLO_TIMEOUT_MS);
+        // On timeout, hand back whatever partial bytes accumulated — discarding
+        // them would tear the first message the transport parses.
+        const timer = setTimeout(() => {
+            const partial = chunks.length === 0 ? undefined : (chunks.length === 1 ? chunks[0] : Buffer.concat(chunks, total));
+            finish({ pid: null, hostPid: null }, partial);
+        }, CLIENT_HELLO_TIMEOUT_MS);
         timer.unref?.();
         socket.on('data', onData);
         socket.on('error', onEnd);

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package/lib/dist/mcp/dynamic-boundaries.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"dynamic-boundaries.d.ts","sourceRoot":"","sources":["../../src/mcp/dynamic-boundaries.ts"],"names":[],"mappings":"AAyBA,MAAM,WAAW,aAAa;IAC5B,uEAAuE;IACvE,IAAI,EAAE,MAAM,CAAC;IACb,sEAAsE;IACtE,KAAK,EAAE,MAAM,CAAC;IACd,+EAA+E;IAC/E,OAAO,EAAE,MAAM,CAAC;IAChB,8EAA8E;IAC9E,IAAI,EAAE,MAAM,CAAC;IACb;;;;;OAKG;IACH,GAAG,CAAC,EAAE,MAAM,CAAC;IACb,mFAAmF;IACnF,SAAS,CAAC,EAAE,OAAO,CAAC;IACpB,kFAAkF;IAClF,SAAS,CAAC,EAAE,MAAM,CAAC;CACpB;AAkLD;;;;;;;;GAQG;AACH,wBAAgB,mBAAmB,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,CA0BxD;AAED;;;;;;;GAOG;AACH,wBAAgB,mBAAmB,CAAC,IAAI,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,EAAE,aAAa,EAAE,MAAM,GAAG,aAAa,EAAE,CA4C1G"}
+{"version":3,"file":"dynamic-boundaries.d.ts","sourceRoot":"","sources":["../../src/mcp/dynamic-boundaries.ts"],"names":[],"mappings":"AAyBA,MAAM,WAAW,aAAa;IAC5B,uEAAuE;IACvE,IAAI,EAAE,MAAM,CAAC;IACb,sEAAsE;IACtE,KAAK,EAAE,MAAM,CAAC;IACd,+EAA+E;IAC/E,OAAO,EAAE,MAAM,CAAC;IAChB,8EAA8E;IAC9E,IAAI,EAAE,MAAM,CAAC;IACb;;;;;OAKG;IACH,GAAG,CAAC,EAAE,MAAM,CAAC;IACb,mFAAmF;IACnF,SAAS,CAAC,EAAE,OAAO,CAAC;IACpB,kFAAkF;IAClF,SAAS,CAAC,EAAE,MAAM,CAAC;CACpB;AAmLD;;;;;;;;GAQG;AACH,wBAAgB,mBAAmB,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,CA0BxD;AAED;;;;;;;GAOG;AACH,wBAAgB,mBAAmB,CAAC,IAAI,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,EAAE,aAAa,EAAE,MAAM,GAAG,aAAa,EAAE,CA4C1G"}

package/lib/dist/mcp/dynamic-boundaries.js

@@ -26,7 +26,7 @@ exports.scanDynamicDispatch = scanDynamicDispatch;
  * them too, quotes preserved.)
  */
 const strip_comments_1 = require("../resolution/strip-comments");
-const JS_FAMILY = new Set(['typescript', 'javascript', 'tsx', 'jsx', 'vue', 'svelte', 'astro']);
+const JS_FAMILY = new Set(['typescript', 'javascript', 'tsx', 'jsx', 'vue', 'svelte', 'astro', 'arkts']);
 const PY = new Set(['python']);
 const RB = new Set(['ruby']);
 const PHP = new Set(['php']);
@@ -160,6 +160,7 @@ function commentLang(language) {
         case 'vue':
         case 'svelte':
         case 'astro':
+        case 'arkts':
             return 'typescript';
         case 'java':
         case 'kotlin':

package/lib/dist/mcp/dynamic-boundaries.js.map

@@ -1 +1 @@
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package/lib/dist/mcp/early-ppid.d.ts

@@ -0,0 +1,26 @@
+/**
+ * Parent-pid baseline captured as early as possible in process life (#1185).
+ *
+ * The PPID watchdog's POSIX signal is "`process.ppid` CHANGED since startup" —
+ * but a launcher killed within the first ~100ms of our boot (an MCP host's
+ * config probe, an instant user cancel, an initialize-timeout teardown) can
+ * reparent this process to init BEFORE the serve/proxy code captured its
+ * baseline. The baseline then reads `1`, never diverges, and the watchdog is
+ * permanently blind — the orphaned-server accumulation reported in #1185.
+ * Reproduced on macOS: SIGKILL the launcher 50ms after spawn while the host
+ * holds the stdio pipes open, and the server survived indefinitely; at 150ms
+ * the old capture had already run and the watchdog reaped it.
+ *
+ * The CLI entry imports this module before anything else, so the capture runs
+ * within the first few ms of JS execution — the earliest a Node process can
+ * observe its parent. A kill landing in the remaining pre-JS window (process
+ * spawn → first require) still captures `1`; that residual case is covered by
+ * the startup-handshake timeout (see ./startup-handshake.ts), which reaps a
+ * server that never receives any MCP traffic.
+ *
+ * Library consumers don't load the CLI entry; for them the capture runs at
+ * first import of the MCP layer — no worse than the previous per-call-site
+ * capture, and identical once the module cache warms.
+ */
+export declare const EARLY_PPID: number;
+//# sourceMappingURL=early-ppid.d.ts.map

package/lib/dist/mcp/early-ppid.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"early-ppid.d.ts","sourceRoot":"","sources":["../../src/mcp/early-ppid.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;GAuBG;AACH,eAAO,MAAM,UAAU,EAAE,MAAqB,CAAC"}

package/lib/dist/mcp/early-ppid.js

@@ -0,0 +1,29 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.EARLY_PPID = void 0;
+/**
+ * Parent-pid baseline captured as early as possible in process life (#1185).
+ *
+ * The PPID watchdog's POSIX signal is "`process.ppid` CHANGED since startup" —
+ * but a launcher killed within the first ~100ms of our boot (an MCP host's
+ * config probe, an instant user cancel, an initialize-timeout teardown) can
+ * reparent this process to init BEFORE the serve/proxy code captured its
+ * baseline. The baseline then reads `1`, never diverges, and the watchdog is
+ * permanently blind — the orphaned-server accumulation reported in #1185.
+ * Reproduced on macOS: SIGKILL the launcher 50ms after spawn while the host
+ * holds the stdio pipes open, and the server survived indefinitely; at 150ms
+ * the old capture had already run and the watchdog reaped it.
+ *
+ * The CLI entry imports this module before anything else, so the capture runs
+ * within the first few ms of JS execution — the earliest a Node process can
+ * observe its parent. A kill landing in the remaining pre-JS window (process
+ * spawn → first require) still captures `1`; that residual case is covered by
+ * the startup-handshake timeout (see ./startup-handshake.ts), which reaps a
+ * server that never receives any MCP traffic.
+ *
+ * Library consumers don't load the CLI entry; for them the capture runs at
+ * first import of the MCP layer — no worse than the previous per-call-site
+ * capture, and identical once the module cache warms.
+ */
+exports.EARLY_PPID = process.ppid;
+//# sourceMappingURL=early-ppid.js.map

package/lib/dist/mcp/early-ppid.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"early-ppid.js","sourceRoot":"","sources":["../../src/mcp/early-ppid.ts"],"names":[],"mappings":";;;AAAA;;;;;;;;;;;;;;;;;;;;;;;GAuBG;AACU,QAAA,UAAU,GAAW,OAAO,CAAC,IAAI,CAAC"}

package/lib/dist/mcp/index.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/mcp/index.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GAkCG;AAuIH;;;;;;;;;;GAUG;AACH,qBAAa,SAAS;IACpB,OAAO,CAAC,WAAW,CAAgB;IAGnC,OAAO,CAAC,OAAO,CAA2B;IAC1C,OAAO,CAAC,MAAM,CAA0B;IACxC,OAAO,CAAC,MAAM,CAAuB;IACrC,OAAO,CAAC,YAAY,CAA+C;IAGnE,OAAO,CAAC,gBAAgB,CAA+B;IAGvD,OAAO,CAAC,YAAY,CAAwB;IAC5C,OAAO,CAAC,QAAQ,CAA4D;IAE5E,OAAO,CAAC,OAAO,CAAS;IACxB,OAAO,CAAC,IAAI,CAA4D;gBAE5D,WAAW,CAAC,EAAE,MAAM;IAIhC;;;;;;;;;;;;OAYG;IACG,KAAK,IAAI,OAAO,CAAC,IAAI,CAAC;IA2C5B;;;;OAIG;IACH,IAAI,IAAI,IAAI;IA2BZ,uEAAuE;YACzD,WAAW;IA+BzB;;;;;;;;OAQG;YACW,kBAAkB;IAqChC;;;;;;;OAOG;YACW,0BAA0B;IAqCxC,iFAAiF;IACjF,OAAO,CAAC,qBAAqB;IAK7B;;;;OAIG;IACH,OAAO,CAAC,mBAAmB;CAoB5B;AAWD,OAAO,EAAE,cAAc,EAAE,MAAM,aAAa,CAAC;AAC7C,OAAO,EAAE,KAAK,EAAE,WAAW,EAAE,MAAM,SAAS,CAAC;AAE7C,OAAO,EAAE,MAAM,EAAE,MAAM,UAAU,CAAC;AAClC,OAAO,EAAE,uBAAuB,EAAE,MAAM,WAAW,CAAC"}
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/mcp/index.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GAkCG;AA+IH;;;;;;;;;;GAUG;AACH,qBAAa,SAAS;IACpB,OAAO,CAAC,WAAW,CAAgB;IAGnC,OAAO,CAAC,OAAO,CAA2B;IAC1C,OAAO,CAAC,MAAM,CAA0B;IACxC,OAAO,CAAC,MAAM,CAAuB;IACrC,OAAO,CAAC,YAAY,CAA+C;IAGnE,OAAO,CAAC,gBAAgB,CAA+B;IAIvD,OAAO,CAAC,YAAY,CAAsB;IAC1C,OAAO,CAAC,QAAQ,CAA4D;IAE5E,OAAO,CAAC,OAAO,CAAS;IACxB,OAAO,CAAC,IAAI,CAA4D;gBAE5D,WAAW,CAAC,EAAE,MAAM;IAIhC;;;;;;;;;;;;OAYG;IACG,KAAK,IAAI,OAAO,CAAC,IAAI,CAAC;IAmD5B;;;;OAIG;IACH,IAAI,IAAI,IAAI;IA2BZ,uEAAuE;YACzD,WAAW;IA0CzB;;;;;;;;OAQG;YACW,kBAAkB;IAqChC;;;;;;;OAOG;YACW,0BAA0B;IAqCxC,iFAAiF;IACjF,OAAO,CAAC,qBAAqB;IAK7B;;;;OAIG;IACH,OAAO,CAAC,mBAAmB;CAoB5B;AAWD,OAAO,EAAE,cAAc,EAAE,MAAM,aAAa,CAAC;AAC7C,OAAO,EAAE,KAAK,EAAE,WAAW,EAAE,MAAM,SAAS,CAAC;AAE7C,OAAO,EAAE,MAAM,EAAE,MAAM,UAAU,CAAC;AAClC,OAAO,EAAE,uBAAuB,EAAE,MAAM,WAAW,CAAC"}

package/lib/dist/mcp/index.js

@@ -80,8 +80,11 @@ const daemon_1 = require("./daemon");
 const proxy_1 = require("./proxy");
 const daemon_paths_1 = require("./daemon-paths");
 const telemetry_1 = require("../telemetry");
+const update_check_1 = require("../upgrade/update-check");
+const early_ppid_1 = require("./early-ppid");
 const ppid_watchdog_1 = require("./ppid-watchdog");
 const liveness_watchdog_1 = require("./liveness-watchdog");
+const startup_handshake_1 = require("./startup-handshake");
 const stdin_teardown_1 = require("./stdin-teardown");
 const wasm_runtime_flags_1 = require("../extraction/wasm-runtime-flags");
 /**
@@ -178,11 +181,16 @@ function spawnDetachedDaemon(root) {
         stdio = 'ignore'; // no log file — discard daemon output rather than fail
     }
     try {
+        // The daemon has no host: scrub the threaded host pid so it can't leak
+        // into the daemon's env (and from there into anything the daemon spawns),
+        // where a long-dead session's host pid would trigger spurious shutdowns.
+        const env = { ...process.env, [DAEMON_INTERNAL_ENV]: '1' };
+        delete env[wasm_runtime_flags_1.HOST_PPID_ENV];
         const child = (0, child_process_1.spawn)(process.execPath, [...process.execArgv, scriptPath, 'serve', '--mcp', '--path', root], {
             detached: true,
             stdio,
             windowsHide: true,
-            env: { ...process.env, [DAEMON_INTERNAL_ENV]: '1' },
+            env,
         });
         child.unref();
     }
@@ -218,9 +226,10 @@ class MCPServer {
     // Worker-thread liveness watchdog (#850). Long-lived modes only; SIGKILLs the
     // process if the main thread wedges in a non-yielding sync loop.
     livenessWatchdog = null;
-    // PPID watchdog baseline — captured at construction so we always have a
-    // baseline, even if start() runs after a fork-style reparent.
-    originalPpid = process.ppid;
+    // PPID watchdog baseline — from the CLI entry's earliest-possible capture
+    // (early-ppid.ts). Capturing here (construction) already lost the race when
+    // the launcher was killed during module loading (#1185).
+    originalPpid = early_ppid_1.EARLY_PPID;
     hostPpid = (0, ppid_watchdog_1.parseHostPpid)(process.env[wasm_runtime_flags_1.HOST_PPID_ENV]);
     // Idempotency guard for stop().
     stopped = false;
@@ -246,6 +255,13 @@ class MCPServer {
         // telemetry opportunistically. Fire-and-forget + unref'd — adds nothing
         // to the handshake path and never keeps the process alive.
         (0, telemetry_1.getTelemetry)().startInterval();
+        // #1243: the MCP config launches the local binary, so a server left
+        // running drifts behind releases with no signal. Refresh the shared
+        // update-check cache in the background and log ONE stderr notice when a
+        // newer version exists (stderr only — stdout is the protocol channel).
+        // The notice also reaches the agent via the initialize instructions and
+        // codegraph_status. Fire-and-forget: adds nothing to the handshake path.
+        (0, update_check_1.checkForUpdateInBackground)();
         // The detached daemon process itself. Checked before the opt-out so the
         // daemon honors the same env it was spawned with (it never sets NO_DAEMON).
         if (daemonInternalSet()) {
@@ -334,6 +350,15 @@ class MCPServer {
         // ECONNRESET/hangup instead of a clean close) as shutdown, and destroy the
         // stream so a hung fd can't busy-spin the event loop (#799).
         (0, stdin_teardown_1.treatStdinFailureAsShutdown)(() => this.stop());
+        // Backstop for a launch abandoned during startup (#1185): launcher killed
+        // before EARLY_PPID could see it + host holding our pipes open. A server
+        // that never receives a byte of MCP traffic isn't serving anyone. Armed
+        // after session.start() attached the real stdin consumer.
+        (0, startup_handshake_1.armStartupHandshakeTimeout)(() => {
+            process.stderr.write('[CodeGraph MCP] No MCP traffic since startup; assuming an abandoned launch and shutting down (#1185). ' +
+                'Tune with CODEGRAPH_STARTUP_HANDSHAKE_TIMEOUT_MS (0 disables).\n');
+            this.stop();
+        });
         this.mode = 'direct';
         this.installSignalHandlers();
         this.installPpidWatchdog();

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package/lib/dist/mcp/liveness-watchdog.d.ts

@@ -1,5 +1,12 @@
 /** Default: 60s — ~300× shorter than the 5h #850 wedge, far longer than any real main-thread block. */
 export declare const DEFAULT_WATCHDOG_TIMEOUT_MS = 60000;
+/**
+ * Hard cap on disk-progress deferral: after this many timeouts' worth of
+ * CONTINUOUS heartbeat silence the process is killed even if the watched files
+ * keep advancing (a wedge coinciding with unrelated file writes, or I/O hung
+ * beyond any legitimate statement). 10× the 60s default ⇒ 10 minutes.
+ */
+export declare const PROGRESS_CAP_MULTIPLIER = 10;
 /** Parse the timeout env, falling back to the default for missing/invalid values. */
 export declare function parseWatchdogTimeoutMs(raw: string | undefined, fallback?: number): number;
 /** Derive a heartbeat cadence that emits several beats inside the timeout window. */
@@ -8,11 +15,21 @@ export interface WatchdogHandle {
     /** Stop heartbeating and shut the watchdog child down. Idempotent. */
     stop(): void;
 }
+export interface WatchdogOptions {
+    /**
+     * Files whose size/mtime advancing counts as forward progress (the SQLite
+     * DB + `-wal` for an in-process indexer). With paths supplied, a silent
+     * timeout only kills when the files did NOT advance — see the header. Omit
+     * for pure heartbeat behavior (the daemon, whose main thread never runs
+     * long synchronous work).
+     */
+    progressPaths?: string[];
+}
 /**
  * Install the main-thread liveness watchdog for a long-lived process. Returns a
  * handle to stop it, or `null` when disabled or when the child can't be spawned
  * (degraded, never throws — a missing watchdog must never keep a process from
  * starting).
  */
-export declare function installMainThreadWatchdog(): WatchdogHandle | null;
+export declare function installMainThreadWatchdog(options?: WatchdogOptions): WatchdogHandle | null;
 //# sourceMappingURL=liveness-watchdog.d.ts.map

package/lib/dist/mcp/liveness-watchdog.d.ts.map

@@ -1 +1 @@
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