@arke-institute/rhiza 0.9.1 → 0.9.3
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
package/dist/logging/writer.d.ts
CHANGED
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@@ -66,7 +66,7 @@ export interface UpdateLogStatusOptions {
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/** Output entity IDs produced by this job */
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outputs?: string[];
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/**
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69
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-
* Input entity IDs that were processed (for
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69
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+
* Input entity IDs that were processed (for log_input relationship).
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* Only used when linkEntitiesToLogs is true.
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*/
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inputEntityIds?: string[];
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@@ -80,11 +80,11 @@ export interface UpdateLogStatusOptions {
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isTerminal?: boolean;
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/**
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* Link entities to this log via relationships:
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83
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-
* -
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84
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-
* -
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83
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+
* - log_input: input entities → log
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84
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+
* - log_output: output entities → log
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*
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* Best-effort - failures are logged but don't fail the job.
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-
* @default
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+
* @default true
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*/
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linkEntitiesToLogs?: boolean;
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}
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package/dist/logging/writer.js
CHANGED
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@@ -103,7 +103,7 @@ export async function writeKladosLog(options) {
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});
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}
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}
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-
// NOTE: Input entity linking (
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106
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+
// NOTE: Input entity linking (log_input) is done in updateLogStatus,
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// AFTER the job completes. This avoids race conditions where our relationship
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// addition changes the entity tip before the worker's CAS update.
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return { logId: entry.id, fileId: logEntityId };
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@@ -210,11 +210,11 @@ export async function updateLogStatus(client, logFileId, status, options) {
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updates: inputEntityIds.map(entityId => ({
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entity_id: entityId,
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relationships_add: [{
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-
predicate: '
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213
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+
predicate: 'log_input',
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peer: logFileId,
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peer_type: 'klados_log',
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}],
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-
note: 'Link input entity to
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217
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+
note: 'Link input entity to log',
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})),
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},
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});
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@@ -233,11 +233,11 @@ export async function updateLogStatus(client, logFileId, status, options) {
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updates: outputs.map(entityId => ({
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entity_id: entityId,
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relationships_add: [{
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-
predicate: '
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+
predicate: 'log_output',
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peer: logFileId,
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peer_type: 'klados_log',
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}],
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-
note: 'Link output entity to
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+
note: 'Link output entity to log',
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})),
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},
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});
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@@ -1 +1 @@
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1
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-
{"version":3,"file":"writer.js","sourceRoot":"","sources":["../../src/logging/writer.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AA0CH;;;;;;GAMG;AACH,MAAM,CAAC,KAAK,UAAU,cAAc,CAClC,OAAwB;IAExB,MAAM,EACJ,MAAM,EACN,eAAe,EACf,KAAK,EACL,QAAQ,EACR,OAAO,EACP,YAAY,GACb,GAAG,OAAO,CAAC;IAEZ,8BAA8B;IAC9B,MAAM,MAAM,GAAW;QACrB,KAAK;QACL,QAAQ,EAAE,OAAO;QACjB,aAAa,EAAE,YAAY;QAC3B,QAAQ;KACT,CAAC;IAEF,8CAA8C;IAC9C,MAAM,QAAQ,GAAG,GAAG,KAAK,CAAC,SAAS,MAAM,KAAK,CAAC,MAAM,EAAE,CAAC;IAExD,iCAAiC;IACjC,MAAM,EAAE,IAAI,EAAE,SAAS,EAAE,KAAK,EAAE,WAAW,EAAE,GAAG,MAAM,MAAM,CAAC,GAAG,CAAC,IAAI,CAAC,WAAW,EAAE;QACjF,IAAI,EAAE;YACJ,IAAI,EAAE,YAAY;YAClB,UAAU,EAAE,eAAe;YAC3B,UAAU,EAAE;gBACV,KAAK,EAAE,QAAQ;gBACf,QAAQ,EAAE,KAAK,CAAC,QAAQ;gBACxB,SAAS,EAAE,KAAK,CAAC,SAAS;gBAC1B,MAAM,EAAE,KAAK,CAAC,MAAM;gBACpB,MAAM,EAAE,KAAK,CAAC,MAAM;gBACpB,QAAQ,EAAE,MAA4C;aACvD;SACF;KACF,CAAC,CAAC;IAEH,IAAI,WAAW,IAAI,CAAC,SAAS,EAAE,CAAC;QAC9B,MAAM,IAAI,KAAK,CAAC,kCAAkC,eAAe,KAAK,IAAI,CAAC,SAAS,CAAC,WAAW,CAAC,IAAI,eAAe,EAAE,CAAC,CAAC;IAC1H,CAAC;IAED,MAAM,WAAW,GAAG,SAAS,CAAC,EAAE,CAAC;IACjC,MAAM,aAAa,GAAG,KAAK,CAAC,QAAQ,CAAC,SAAS,IAAI,KAAK,CAAC,QAAQ,CAAC,SAAS,CAAC,MAAM,GAAG,CAAC,CAAC;IAEtF,2DAA2D;IAC3D,MAAM,aAAa,GAGd,EAAE,CAAC;IAER,sDAAsD;IACtD,2DAA2D;IAC3D,IAAI,aAAa,EAAE,CAAC;QAClB,KAAK,MAAM,WAAW,IAAI,KAAK,CAAC,QAAQ,CAAC,SAAU,EAAE,CAAC;YACpD,aAAa,CAAC,IAAI,CAAC;gBACjB,SAAS,EAAE,eAAe;gBAC1B,IAAI,EAAE,WAAW;aAClB,CAAC,CAAC;QACL,CAAC;IACH,CAAC;IAED,kFAAkF;IAClF,MAAM,eAAe,GAShB,EAAE,CAAC;IAER,IAAI,aAAa,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;QAC7B,eAAe,CAAC,IAAI,CAAC;YACnB,SAAS,EAAE,WAAW;YACtB,iBAAiB,EAAE,aAAa;YAChC,IAAI,EAAE,wCAAwC;SAC/C,CAAC,CAAC;IACL,CAAC;IAED,eAAe,CAAC,IAAI,CAAC;QACnB,SAAS,EAAE,eAAe;QAC1B,iBAAiB,EAAE,CAAC;gBAClB,SAAS,EAAE,aAAa;gBACxB,IAAI,EAAE,WAAW;gBACjB,SAAS,EAAE,YAAY;gBACvB,UAAU,EAAE;oBACV,UAAU,EAAE,KAAK,CAAC,UAAU;oBAC5B,SAAS,EAAE,KAAK,CAAC,SAAS;iBAC3B;aACF,CAAC;QACF,IAAI,EAAE,8BAA8B;KACrC,CAAC,CAAC;IAEH,MAAM,MAAM,CAAC,GAAG,CAAC,IAAI,CAAC,mBAAmB,EAAE;QACzC,IAAI,EAAE,EAAE,OAAO,EAAE,eAAe,EAAE;KACnC,CAAC,CAAC;IAEH,yEAAyE;IACzE,6EAA6E;IAC7E,4EAA4E;IAC5E,IAAI,aAAa,EAAE,CAAC;QAClB,MAAM,YAAY,GAAG,KAAK,CAAC,QAAQ,CAAC,SAAU,CAAC;QAE/C,0EAA0E;QAC1E,MAAM,UAAU,GAAG,GAAG,CAAC;QACvB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,YAAY,CAAC,MAAM,EAAE,CAAC,IAAI,UAAU,EAAE,CAAC;YACzD,MAAM,KAAK,GAAG,YAAY,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC,GAAG,UAAU,CAAC,CAAC;YACpD,MAAM,MAAM,CAAC,GAAG,CAAC,IAAI,CAAC,mBAAmB,EAAE;gBACzC,IAAI,EAAE;oBACJ,OAAO,EAAE,KAAK,CAAC,GAAG,CAAC,WAAW,CAAC,EAAE,CAAC,CAAC;wBACjC,SAAS,EAAE,WAAW;wBACtB,iBAAiB,EAAE,CAAC;gCAClB,SAAS,EAAE,SAAS;gCACpB,IAAI,EAAE,WAAW;6BAClB,CAAC;wBACF,IAAI,EAAE,0CAA0C;qBACjD,CAAC,CAAC;iBACJ;aACF,CAAC,CAAC;QACL,CAAC;IACH,CAAC;IAED,
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1
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+
{"version":3,"file":"writer.js","sourceRoot":"","sources":["../../src/logging/writer.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AA0CH;;;;;;GAMG;AACH,MAAM,CAAC,KAAK,UAAU,cAAc,CAClC,OAAwB;IAExB,MAAM,EACJ,MAAM,EACN,eAAe,EACf,KAAK,EACL,QAAQ,EACR,OAAO,EACP,YAAY,GACb,GAAG,OAAO,CAAC;IAEZ,8BAA8B;IAC9B,MAAM,MAAM,GAAW;QACrB,KAAK;QACL,QAAQ,EAAE,OAAO;QACjB,aAAa,EAAE,YAAY;QAC3B,QAAQ;KACT,CAAC;IAEF,8CAA8C;IAC9C,MAAM,QAAQ,GAAG,GAAG,KAAK,CAAC,SAAS,MAAM,KAAK,CAAC,MAAM,EAAE,CAAC;IAExD,iCAAiC;IACjC,MAAM,EAAE,IAAI,EAAE,SAAS,EAAE,KAAK,EAAE,WAAW,EAAE,GAAG,MAAM,MAAM,CAAC,GAAG,CAAC,IAAI,CAAC,WAAW,EAAE;QACjF,IAAI,EAAE;YACJ,IAAI,EAAE,YAAY;YAClB,UAAU,EAAE,eAAe;YAC3B,UAAU,EAAE;gBACV,KAAK,EAAE,QAAQ;gBACf,QAAQ,EAAE,KAAK,CAAC,QAAQ;gBACxB,SAAS,EAAE,KAAK,CAAC,SAAS;gBAC1B,MAAM,EAAE,KAAK,CAAC,MAAM;gBACpB,MAAM,EAAE,KAAK,CAAC,MAAM;gBACpB,QAAQ,EAAE,MAA4C;aACvD;SACF;KACF,CAAC,CAAC;IAEH,IAAI,WAAW,IAAI,CAAC,SAAS,EAAE,CAAC;QAC9B,MAAM,IAAI,KAAK,CAAC,kCAAkC,eAAe,KAAK,IAAI,CAAC,SAAS,CAAC,WAAW,CAAC,IAAI,eAAe,EAAE,CAAC,CAAC;IAC1H,CAAC;IAED,MAAM,WAAW,GAAG,SAAS,CAAC,EAAE,CAAC;IACjC,MAAM,aAAa,GAAG,KAAK,CAAC,QAAQ,CAAC,SAAS,IAAI,KAAK,CAAC,QAAQ,CAAC,SAAS,CAAC,MAAM,GAAG,CAAC,CAAC;IAEtF,2DAA2D;IAC3D,MAAM,aAAa,GAGd,EAAE,CAAC;IAER,sDAAsD;IACtD,2DAA2D;IAC3D,IAAI,aAAa,EAAE,CAAC;QAClB,KAAK,MAAM,WAAW,IAAI,KAAK,CAAC,QAAQ,CAAC,SAAU,EAAE,CAAC;YACpD,aAAa,CAAC,IAAI,CAAC;gBACjB,SAAS,EAAE,eAAe;gBAC1B,IAAI,EAAE,WAAW;aAClB,CAAC,CAAC;QACL,CAAC;IACH,CAAC;IAED,kFAAkF;IAClF,MAAM,eAAe,GAShB,EAAE,CAAC;IAER,IAAI,aAAa,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;QAC7B,eAAe,CAAC,IAAI,CAAC;YACnB,SAAS,EAAE,WAAW;YACtB,iBAAiB,EAAE,aAAa;YAChC,IAAI,EAAE,wCAAwC;SAC/C,CAAC,CAAC;IACL,CAAC;IAED,eAAe,CAAC,IAAI,CAAC;QACnB,SAAS,EAAE,eAAe;QAC1B,iBAAiB,EAAE,CAAC;gBAClB,SAAS,EAAE,aAAa;gBACxB,IAAI,EAAE,WAAW;gBACjB,SAAS,EAAE,YAAY;gBACvB,UAAU,EAAE;oBACV,UAAU,EAAE,KAAK,CAAC,UAAU;oBAC5B,SAAS,EAAE,KAAK,CAAC,SAAS;iBAC3B;aACF,CAAC;QACF,IAAI,EAAE,8BAA8B;KACrC,CAAC,CAAC;IAEH,MAAM,MAAM,CAAC,GAAG,CAAC,IAAI,CAAC,mBAAmB,EAAE;QACzC,IAAI,EAAE,EAAE,OAAO,EAAE,eAAe,EAAE;KACnC,CAAC,CAAC;IAEH,yEAAyE;IACzE,6EAA6E;IAC7E,4EAA4E;IAC5E,IAAI,aAAa,EAAE,CAAC;QAClB,MAAM,YAAY,GAAG,KAAK,CAAC,QAAQ,CAAC,SAAU,CAAC;QAE/C,0EAA0E;QAC1E,MAAM,UAAU,GAAG,GAAG,CAAC;QACvB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,YAAY,CAAC,MAAM,EAAE,CAAC,IAAI,UAAU,EAAE,CAAC;YACzD,MAAM,KAAK,GAAG,YAAY,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC,GAAG,UAAU,CAAC,CAAC;YACpD,MAAM,MAAM,CAAC,GAAG,CAAC,IAAI,CAAC,mBAAmB,EAAE;gBACzC,IAAI,EAAE;oBACJ,OAAO,EAAE,KAAK,CAAC,GAAG,CAAC,WAAW,CAAC,EAAE,CAAC,CAAC;wBACjC,SAAS,EAAE,WAAW;wBACtB,iBAAiB,EAAE,CAAC;gCAClB,SAAS,EAAE,SAAS;gCACpB,IAAI,EAAE,WAAW;6BAClB,CAAC;wBACF,IAAI,EAAE,0CAA0C;qBACjD,CAAC,CAAC;iBACJ;aACF,CAAC,CAAC;QACL,CAAC;IACH,CAAC;IAED,qEAAqE;IACrE,8EAA8E;IAC9E,kEAAkE;IAElE,OAAO,EAAE,KAAK,EAAE,KAAK,CAAC,EAAE,EAAE,MAAM,EAAE,WAAW,EAAE,CAAC;AAClD,CAAC;AAED;;;;;GAKG;AACH,MAAM,CAAC,KAAK,UAAU,qBAAqB,CACzC,MAAkB,EAClB,SAAiB,EACjB,QAAyB;IAEzB,MAAM,MAAM,CAAC,GAAG,CAAC,IAAI,CAAC,mBAAmB,EAAE;QACzC,IAAI,EAAE;YACJ,OAAO,EAAE,CAAC;oBACR,SAAS,EAAE,SAAS;oBACpB,UAAU,EAAE;wBACV,QAAQ,EAAE;4BACR,KAAK,EAAE;gCACL,QAAQ;6BACT;yBACF;qBACF;oBACD,IAAI,EAAE,4BAA4B;iBACnC,CAAC;SACH;KACF,CAAC,CAAC;AACL,CAAC;AA6CD;;;;GAIG;AACH,MAAM,CAAC,KAAK,UAAU,eAAe,CACnC,MAAkB,EAClB,SAAiB,EACjB,MAAoC,EACpC,OAAgC;IAEhC,MAAM,EAAE,QAAQ,EAAE,QAAQ,EAAE,OAAO,EAAE,cAAc,EAAE,GAAG,OAAO,IAAI,EAAE,CAAC;IACtE,MAAM,WAAW,GAAG,IAAI,IAAI,EAAE,CAAC,WAAW,EAAE,CAAC;IAE7C,mCAAmC;IACnC,MAAM,WAAW,GAA4B;QAC3C,MAAM;QACN,YAAY,EAAE,WAAW;KAC1B,CAAC;IAEF,IAAI,QAAQ,EAAE,CAAC;QACb,WAAW,CAAC,KAAK,GAAG,QAAQ,CAAC;IAC/B,CAAC;IAED,IAAI,OAAO,IAAI,OAAO,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;QAClC,WAAW,CAAC,OAAO,GAAG,OAAO,CAAC;IAChC,CAAC;IAED,MAAM,aAAa,GAA4B;QAC7C,KAAK,EAAE,WAAW;KACnB,CAAC;IAEF,IAAI,QAAQ,EAAE,CAAC;QACb,aAAa,CAAC,QAAQ,GAAG,QAAQ,CAAC;IACpC,CAAC;IAED,2EAA2E;IAC3E,MAAM,MAAM,CAAC,GAAG,CAAC,IAAI,CAAC,mBAAmB,EAAE;QACzC,IAAI,EAAE;YACJ,OAAO,EAAE,CAAC;oBACR,SAAS,EAAE,SAAS;oBACpB,UAAU,EAAE;wBACV,MAAM,EAAE,8BAA8B;wBACtC,QAAQ,EAAE,aAAa;qBACxB;oBACD,IAAI,EAAE,wBAAwB,MAAM,EAAE;iBACvC,CAAC;SACH;KACF,CAAC,CAAC;IAEH,yDAAyD;IACzD,6EAA6E;IAC7E,IAAI,MAAM,KAAK,MAAM,IAAI,OAAO,EAAE,eAAe,EAAE,CAAC;QAClD,MAAM,aAAa,GAAwG,CAAC;gBAC1H,SAAS,EAAE,UAAU;gBACrB,IAAI,EAAE,SAAS;gBACf,SAAS,EAAE,YAAY;gBACvB,UAAU,EAAE;oBACV,YAAY,EAAE,WAAW;iBAC1B;aACF,CAAC,CAAC;QAEH,8EAA8E;QAC9E,IAAI,OAAO,CAAC,UAAU,EAAE,CAAC;YACvB,aAAa,CAAC,IAAI,CAAC;gBACjB,SAAS,EAAE,cAAc;gBACzB,IAAI,EAAE,SAAS;gBACf,SAAS,EAAE,YAAY;aACxB,CAAC,CAAC;QACL,CAAC;QAED,MAAM,MAAM,CAAC,GAAG,CAAC,IAAI,CAAC,mBAAmB,EAAE;YACzC,IAAI,EAAE;gBACJ,OAAO,EAAE,CAAC;wBACR,SAAS,EAAE,OAAO,CAAC,eAAe;wBAClC,iBAAiB,EAAE,aAAa;wBAChC,IAAI,EAAE,OAAO,CAAC,UAAU;4BACtB,CAAC,CAAC,+CAA+C;4BACjD,CAAC,CAAC,mCAAmC;qBACxC,CAAC;aACH;SACF,CAAC,CAAC;IACL,CAAC;IAED,+CAA+C;IAC/C,qFAAqF;IACrF,sEAAsE;IACtE,IAAI,OAAO,EAAE,kBAAkB,IAAI,cAAc,IAAI,cAAc,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;QAC/E,IAAI,CAAC;YACH,MAAM,MAAM,CAAC,GAAG,CAAC,IAAI,CAAC,mBAAmB,EAAE;gBACzC,IAAI,EAAE;oBACJ,OAAO,EAAE,cAAc,CAAC,GAAG,CAAC,QAAQ,CAAC,EAAE,CAAC,CAAC;wBACvC,SAAS,EAAE,QAAQ;wBACnB,iBAAiB,EAAE,CAAC;gCAClB,SAAS,EAAE,WAAW;gCACtB,IAAI,EAAE,SAAS;gCACf,SAAS,EAAE,YAAY;6BACxB,CAAC;wBACF,IAAI,EAAE,0BAA0B;qBACjC,CAAC,CAAC;iBACJ;aACF,CAAC,CAAC;QACL,CAAC;QAAC,OAAO,GAAG,EAAE,CAAC;YACb,OAAO,CAAC,IAAI,CAAC,+CAA+C,EAAG,GAAa,CAAC,OAAO,IAAI,GAAG,CAAC,CAAC;QAC/F,CAAC;IACH,CAAC;IAED,gDAAgD;IAChD,sFAAsF;IACtF,sEAAsE;IACtE,IAAI,OAAO,EAAE,kBAAkB,IAAI,OAAO,IAAI,OAAO,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;QACjE,IAAI,CAAC;YACH,MAAM,MAAM,CAAC,GAAG,CAAC,IAAI,CAAC,mBAAmB,EAAE;gBACzC,IAAI,EAAE;oBACJ,OAAO,EAAE,OAAO,CAAC,GAAG,CAAC,QAAQ,CAAC,EAAE,CAAC,CAAC;wBAChC,SAAS,EAAE,QAAQ;wBACnB,iBAAiB,EAAE,CAAC;gCAClB,SAAS,EAAE,YAAY;gCACvB,IAAI,EAAE,SAAS;gCACf,SAAS,EAAE,YAAY;6BACxB,CAAC;wBACF,IAAI,EAAE,2BAA2B;qBAClC,CAAC,CAAC;iBACJ;aACF,CAAC,CAAC;QACL,CAAC;QAAC,OAAO,GAAG,EAAE,CAAC;YACb,OAAO,CAAC,IAAI,CAAC,gDAAgD,EAAG,GAAa,CAAC,OAAO,IAAI,GAAG,CAAC,CAAC;QAChG,CAAC;IACH,CAAC;AACH,CAAC"}
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package/dist/worker/job.d.ts
CHANGED
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@@ -32,12 +32,12 @@ export interface KladosJobConfig {
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/**
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* Link entities to their processing logs via relationships.
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* When enabled, creates:
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* -
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-
* -
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+
* - log_input: input entity → log (when job completes)
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* - log_output: output entity → log (when job completes with outputs)
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*
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* Requires `entity:update` permission on target_collection.
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* Linking is best-effort - failures are logged but don't fail the job.
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-
* @default
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* @default true
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*/
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linkEntitiesToLogs?: boolean;
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}
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package/dist/worker/job.js
CHANGED
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@@ -263,7 +263,7 @@ export class KladosJob {
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messages: this.log.getMessages(),
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outputs: outputIds.length > 0 ? outputIds : undefined,
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265
|
inputEntityIds: inputEntityIds.length > 0 ? inputEntityIds : undefined,
|
|
266
|
-
linkEntitiesToLogs: this.config.linkEntitiesToLogs,
|
|
266
|
+
linkEntitiesToLogs: this.config.linkEntitiesToLogs ?? true,
|
|
267
267
|
jobCollectionId: this.request.job_collection,
|
|
268
268
|
isTerminal,
|
|
269
269
|
});
|
package/dist/worker/job.js.map
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
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|
|
1
|
+
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