@arke-institute/rhiza 0.1.0

package/dist/__tests__/unit/status.test.js

@@ -0,0 +1,164 @@
+/**
+ * Status Tests
+ *
+ * Tests for building workflow status from log chains.
+ * Status provides an overview of workflow execution progress.
+ */
+import { describe, it, expect } from 'vitest';
+import { buildStatusFromLogs } from '../../status';
+import { successfulLinearLogs, successfulScatterGatherLogs, partialErrorLogs, allErrorLogs, mixedErrorLogs, runningWorkflowLogs, singleNodeLogs, } from '../fixtures/logs';
+describe('Status', () => {
+    describe('buildStatusFromLogs', () => {
+        describe('overall status', () => {
+            it('returns done when all leaves done', () => {
+                const status = buildStatusFromLogs(successfulLinearLogs);
+                expect(status.status).toBe('done');
+            });
+            it('returns done for scatter-gather when complete', () => {
+                const status = buildStatusFromLogs(successfulScatterGatherLogs);
+                expect(status.status).toBe('done');
+            });
+            it('returns error when any leaf error', () => {
+                const status = buildStatusFromLogs(partialErrorLogs);
+                expect(status.status).toBe('error');
+            });
+            it('returns error when all leaves are errors', () => {
+                const status = buildStatusFromLogs(allErrorLogs);
+                expect(status.status).toBe('error');
+            });
+            it('returns running when any leaf running', () => {
+                const status = buildStatusFromLogs(runningWorkflowLogs);
+                expect(status.status).toBe('running');
+            });
+            it('returns done for single node workflow', () => {
+                const status = buildStatusFromLogs(singleNodeLogs);
+                expect(status.status).toBe('done');
+            });
+            it('returns unknown for empty logs', () => {
+                const status = buildStatusFromLogs([]);
+                expect(status.status).toBe('unknown');
+            });
+        });
+        describe('progress counters', () => {
+            it('calculates correct totals for linear workflow', () => {
+                const status = buildStatusFromLogs(successfulLinearLogs);
+                expect(status.progress.total).toBe(3);
+                expect(status.progress.done).toBe(3);
+                expect(status.progress.error).toBe(0);
+                expect(status.progress.running).toBe(0);
+            });
+            it('calculates correct totals for scatter-gather workflow', () => {
+                const status = buildStatusFromLogs(successfulScatterGatherLogs);
+                expect(status.progress.total).toBe(5); // producer + 3 workers + aggregator
+                expect(status.progress.done).toBe(5);
+            });
+            it('counts errors correctly', () => {
+                const status = buildStatusFromLogs(partialErrorLogs);
+                expect(status.progress.error).toBe(1);
+                expect(status.progress.done).toBe(3); // producer + 2 successful workers
+            });
+            it('counts running correctly', () => {
+                const status = buildStatusFromLogs(runningWorkflowLogs);
+                expect(status.progress.running).toBe(1);
+                expect(status.progress.done).toBe(1);
+            });
+            it('calculates all error types', () => {
+                const status = buildStatusFromLogs(allErrorLogs);
+                expect(status.progress.error).toBe(3);
+                expect(status.progress.done).toBe(1); // Just the producer
+            });
+        });
+        describe('current kladoi', () => {
+            it('identifies currently running kladoi', () => {
+                const status = buildStatusFromLogs(runningWorkflowLogs);
+                expect(status.currentKladoi).toContain('II01klados_b');
+            });
+            it('returns empty array when nothing running', () => {
+                const status = buildStatusFromLogs(successfulLinearLogs);
+                expect(status.currentKladoi).toHaveLength(0);
+            });
+            it('includes all running kladoi', () => {
+                // Create logs with multiple running
+                const multipleRunning = [
+                    ...runningWorkflowLogs,
+                    {
+                        id: 'log_run_child2',
+                        type: 'klados_log',
+                        rhiza_id: 'II01rhiza_linear',
+                        klados_id: 'II01klados_c',
+                        job_id: 'job_run_3',
+                        status: 'running',
+                        started_at: '2025-01-01T00:01:00Z',
+                        received: {
+                            target: 'output_b',
+                            from_logs: ['log_run_root'],
+                        },
+                    },
+                ];
+                const status = buildStatusFromLogs(multipleRunning);
+                expect(status.currentKladoi).toContain('II01klados_b');
+                expect(status.currentKladoi).toContain('II01klados_c');
+            });
+        });
+        describe('error summaries', () => {
+            it('collects error summaries', () => {
+                const status = buildStatusFromLogs(partialErrorLogs);
+                expect(status.errors).toBeDefined();
+                expect(status.errors).toHaveLength(1);
+            });
+            it('includes error details', () => {
+                const status = buildStatusFromLogs(partialErrorLogs);
+                expect(status.errors[0]).toHaveProperty('kladosId');
+                expect(status.errors[0]).toHaveProperty('jobId');
+                expect(status.errors[0]).toHaveProperty('code');
+                expect(status.errors[0]).toHaveProperty('message');
+            });
+            it('collects multiple errors', () => {
+                const status = buildStatusFromLogs(allErrorLogs);
+                expect(status.errors).toHaveLength(3);
+            });
+            it('returns empty array when no errors', () => {
+                const status = buildStatusFromLogs(successfulLinearLogs);
+                expect(status.errors).toHaveLength(0);
+            });
+            it('includes retryable flag', () => {
+                const status = buildStatusFromLogs(mixedErrorLogs);
+                expect(status.errors).toHaveLength(2);
+                const retryable = status.errors.filter((e) => e.retryable);
+                const nonRetryable = status.errors.filter((e) => !e.retryable);
+                expect(retryable.length).toBe(1);
+                expect(nonRetryable.length).toBe(1);
+            });
+        });
+        describe('timing information', () => {
+            it('includes started_at from earliest log', () => {
+                const status = buildStatusFromLogs(successfulLinearLogs);
+                expect(status.startedAt).toBe('2025-01-01T00:00:00Z');
+            });
+            it('includes completed_at from latest log when done', () => {
+                const status = buildStatusFromLogs(successfulLinearLogs);
+                expect(status.completedAt).toBe('2025-01-01T00:03:00Z');
+            });
+            it('does not include completed_at when running', () => {
+                const status = buildStatusFromLogs(runningWorkflowLogs);
+                expect(status.completedAt).toBeUndefined();
+            });
+            it('includes completed_at when error (workflow terminated)', () => {
+                const status = buildStatusFromLogs(partialErrorLogs);
+                // Error workflow is still "terminal" even if with error
+                expect(status.completedAt).toBeDefined();
+            });
+        });
+        describe('rhiza information', () => {
+            it('includes rhiza_id', () => {
+                const status = buildStatusFromLogs(successfulLinearLogs);
+                expect(status.rhizaId).toBe('II01rhiza_linear');
+            });
+            it('handles scatter-gather rhiza_id', () => {
+                const status = buildStatusFromLogs(successfulScatterGatherLogs);
+                expect(status.rhizaId).toBe('II01rhiza_scatter_gather');
+            });
+        });
+    });
+});
+//# sourceMappingURL=status.test.js.map

package/dist/__tests__/unit/status.test.js.map

@@ -0,0 +1 @@
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package/dist/__tests__/unit/target.test.d.ts

@@ -0,0 +1,8 @@
+/**
+ * Target Resolution Tests
+ *
+ * Tests for resolving targets from flow steps using route rules.
+ * Pure function - no API calls.
+ */
+export {};
+//# sourceMappingURL=target.test.d.ts.map

package/dist/__tests__/unit/target.test.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"target.test.d.ts","sourceRoot":"","sources":["../../../src/__tests__/unit/target.test.ts"],"names":[],"mappings":"AAAA;;;;;GAKG"}

package/dist/__tests__/unit/target.test.js

@@ -0,0 +1,116 @@
+/**
+ * Target Resolution Tests
+ *
+ * Tests for resolving targets from flow steps using route rules.
+ * Pure function - no API calls.
+ */
+import { describe, it, expect } from 'vitest';
+import { resolveTarget } from '../../handoff/target';
+import { ref } from '../../types';
+describe('Target Resolution', () => {
+    describe('resolveTarget', () => {
+        describe('without route rules', () => {
+            it('returns default target for pass', () => {
+                const then = { pass: ref('target_a') };
+                const properties = { type: 'File' };
+                const result = resolveTarget(then, properties);
+                expect(result?.pi).toBe('target_a');
+            });
+            it('returns default target for scatter', () => {
+                const then = { scatter: ref('worker_klados') };
+                const properties = { type: 'File' };
+                const result = resolveTarget(then, properties);
+                expect(result?.pi).toBe('worker_klados');
+            });
+            it('returns default target for gather', () => {
+                const then = { gather: ref('aggregator_klados') };
+                const properties = { type: 'Result' };
+                const result = resolveTarget(then, properties);
+                expect(result?.pi).toBe('aggregator_klados');
+            });
+            it('returns null for done', () => {
+                const then = { done: true };
+                const properties = { type: 'File' };
+                const result = resolveTarget(then, properties);
+                expect(result).toBeNull();
+            });
+        });
+        describe('with route rules', () => {
+            it('evaluates route rules in order', () => {
+                const then = {
+                    pass: ref('default_handler'),
+                    route: [
+                        { where: { property: 'type', equals: 'pdf' }, target: ref('pdf_handler') },
+                        { where: { property: 'type', equals: 'image' }, target: ref('image_handler') },
+                    ],
+                };
+                const properties = { type: 'pdf' };
+                const result = resolveTarget(then, properties);
+                expect(result?.pi).toBe('pdf_handler');
+            });
+            it('returns second rule target when first does not match', () => {
+                const then = {
+                    pass: ref('default_handler'),
+                    route: [
+                        { where: { property: 'type', equals: 'pdf' }, target: ref('pdf_handler') },
+                        { where: { property: 'type', equals: 'image' }, target: ref('image_handler') },
+                    ],
+                };
+                const properties = { type: 'image' };
+                const result = resolveTarget(then, properties);
+                expect(result?.pi).toBe('image_handler');
+            });
+            it('falls back to default when no rules match', () => {
+                const then = {
+                    pass: ref('default_handler'),
+                    route: [
+                        { where: { property: 'type', equals: 'pdf' }, target: ref('pdf_handler') },
+                        { where: { property: 'type', equals: 'image' }, target: ref('image_handler') },
+                    ],
+                };
+                const properties = { type: 'unknown' };
+                const result = resolveTarget(then, properties);
+                expect(result?.pi).toBe('default_handler');
+            });
+            it('works with scatter and route rules', () => {
+                const then = {
+                    scatter: ref('default_worker'),
+                    route: [
+                        { where: { property: 'priority', equals: 'high' }, target: ref('priority_worker') },
+                    ],
+                };
+                const properties = { priority: 'high' };
+                const result = resolveTarget(then, properties);
+                expect(result?.pi).toBe('priority_worker');
+            });
+            it('handles complex AND/OR route conditions', () => {
+                const then = {
+                    pass: ref('default_handler'),
+                    route: [
+                        {
+                            where: {
+                                and: [
+                                    { property: 'type', equals: 'file' },
+                                    { or: [{ property: 'ext', equals: 'jpg' }, { property: 'ext', equals: 'png' }] },
+                                ],
+                            },
+                            target: ref('image_handler'),
+                        },
+                    ],
+                };
+                expect(resolveTarget(then, { type: 'file', ext: 'jpg' })?.pi).toBe('image_handler');
+                expect(resolveTarget(then, { type: 'file', ext: 'pdf' })?.pi).toBe('default_handler');
+            });
+            it('handles empty route array as no routing', () => {
+                const then = {
+                    pass: ref('default_handler'),
+                    route: [],
+                };
+                const properties = { type: 'anything' };
+                const result = resolveTarget(then, properties);
+                expect(result?.pi).toBe('default_handler');
+            });
+        });
+    });
+});
+//# sourceMappingURL=target.test.js.map

package/dist/__tests__/unit/target.test.js.map

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package/dist/__tests__/unit/traverse.test.d.ts

@@ -0,0 +1,8 @@
+/**
+ * Log Chain Traversal Tests
+ *
+ * Tests for traversing log chains to find leaves, errors, and build trees.
+ * Log chains represent the execution history of a workflow.
+ */
+export {};
+//# sourceMappingURL=traverse.test.d.ts.map

package/dist/__tests__/unit/traverse.test.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"traverse.test.d.ts","sourceRoot":"","sources":["../../../src/__tests__/unit/traverse.test.ts"],"names":[],"mappings":"AAAA;;;;;GAKG"}

package/dist/__tests__/unit/traverse.test.js

@@ -0,0 +1,143 @@
+/**
+ * Log Chain Traversal Tests
+ *
+ * Tests for traversing log chains to find leaves, errors, and build trees.
+ * Log chains represent the execution history of a workflow.
+ */
+import { describe, it, expect } from 'vitest';
+import { findLeaves, findErrorLeaves, buildLogTree, } from '../../traverse';
+import { successfulLinearLogs, successfulScatterGatherLogs, partialErrorLogs, allErrorLogs, mixedErrorLogs, runningWorkflowLogs, singleNodeLogs, } from '../fixtures/logs';
+describe('Log Chain Traversal', () => {
+    describe('findLeaves', () => {
+        it('finds terminal nodes (no children) in linear chain', () => {
+            const leaves = findLeaves(successfulLinearLogs);
+            expect(leaves).toHaveLength(1);
+            expect(leaves[0].klados_id).toBe('II01klados_c');
+        });
+        it('finds all leaves in scatter-gather chain', () => {
+            const leaves = findLeaves(successfulScatterGatherLogs);
+            // Should find the aggregator as the only leaf
+            expect(leaves).toHaveLength(1);
+            expect(leaves[0].klados_id).toBe('II01klados_aggregator');
+        });
+        it('finds multiple leaves when workers have errors', () => {
+            const leaves = findLeaves(partialErrorLogs);
+            // Error leaf + workers that completed + aggregator may not exist
+            expect(leaves.length).toBeGreaterThanOrEqual(1);
+        });
+        it('returns empty for empty log chain', () => {
+            const leaves = findLeaves([]);
+            expect(leaves).toHaveLength(0);
+        });
+        it('handles single-node chain', () => {
+            const leaves = findLeaves(singleNodeLogs);
+            expect(leaves).toHaveLength(1);
+            expect(leaves[0].id).toBe('log_single');
+        });
+        it('finds running logs as leaves', () => {
+            const leaves = findLeaves(runningWorkflowLogs);
+            // Running logs should be leaves since they haven't produced children yet
+            const runningLeaves = leaves.filter((l) => l.status === 'running');
+            expect(runningLeaves.length).toBeGreaterThan(0);
+        });
+    });
+    describe('findErrorLeaves', () => {
+        it('finds logs with status: error', () => {
+            const errorLeaves = findErrorLeaves(partialErrorLogs);
+            expect(errorLeaves).toHaveLength(1);
+            expect(errorLeaves[0].log.status).toBe('error');
+        });
+        it('returns empty for successful chain', () => {
+            const errorLeaves = findErrorLeaves(successfulLinearLogs);
+            expect(errorLeaves).toHaveLength(0);
+        });
+        it('finds all error leaves when multiple errors', () => {
+            const errorLeaves = findErrorLeaves(allErrorLogs);
+            expect(errorLeaves).toHaveLength(3);
+            errorLeaves.forEach((e) => {
+                expect(e.log.status).toBe('error');
+            });
+        });
+        it('marks retryable based on error.retryable', () => {
+            const errorLeaves = findErrorLeaves(partialErrorLogs);
+            expect(errorLeaves[0].retryable).toBe(true);
+            expect(errorLeaves[0].log.error?.retryable).toBe(true);
+        });
+        it('marks non-retryable errors correctly', () => {
+            const errorLeaves = findErrorLeaves(allErrorLogs);
+            // Should have at least one non-retryable error
+            const nonRetryable = errorLeaves.filter((e) => !e.retryable);
+            expect(nonRetryable.length).toBeGreaterThan(0);
+        });
+        it('builds path from root to error', () => {
+            const errorLeaves = findErrorLeaves(partialErrorLogs);
+            expect(errorLeaves[0].path).toBeDefined();
+            expect(errorLeaves[0].path.length).toBeGreaterThan(0);
+            // Path should start with root klados
+            expect(errorLeaves[0].path[0]).toBe('II01klados_producer');
+        });
+        it('includes log entry in error leaf', () => {
+            const errorLeaves = findErrorLeaves(partialErrorLogs);
+            expect(errorLeaves[0].log).toBeDefined();
+            expect(errorLeaves[0].log.id).toBeDefined();
+            expect(errorLeaves[0].log.klados_id).toBeDefined();
+        });
+    });
+    describe('buildLogTree', () => {
+        it('builds tree from root for linear chain', () => {
+            const tree = buildLogTree(successfulLinearLogs);
+            expect(tree).not.toBeNull();
+            expect(tree.log.klados_id).toBe('II01klados_a');
+            expect(tree.children).toHaveLength(1);
+            expect(tree.children[0].log.klados_id).toBe('II01klados_b');
+        });
+        it('builds tree with depth 3 for linear chain', () => {
+            const tree = buildLogTree(successfulLinearLogs);
+            expect(tree).not.toBeNull();
+            expect(tree.children).toHaveLength(1);
+            expect(tree.children[0].children).toHaveLength(1);
+            expect(tree.children[0].children[0].children).toHaveLength(0);
+        });
+        it('handles scatter (multiple children)', () => {
+            const tree = buildLogTree(successfulScatterGatherLogs);
+            expect(tree).not.toBeNull();
+            // Root should have 3 children (scattered workers)
+            expect(tree.children.length).toBe(3);
+        });
+        it('returns null for empty logs', () => {
+            const tree = buildLogTree([]);
+            expect(tree).toBeNull();
+        });
+        it('handles single node chain', () => {
+            const tree = buildLogTree(singleNodeLogs);
+            expect(tree).not.toBeNull();
+            expect(tree.children).toHaveLength(0);
+        });
+        it('includes log entry in each node', () => {
+            const tree = buildLogTree(successfulLinearLogs);
+            expect(tree).not.toBeNull();
+            expect(tree.log).toBeDefined();
+            expect(tree.log.id).toBeDefined();
+            expect(tree.log.status).toBeDefined();
+        });
+        it('maintains parent-child relationships correctly', () => {
+            const tree = buildLogTree(successfulScatterGatherLogs);
+            expect(tree).not.toBeNull();
+            // Each worker should have the aggregator as child (after gather)
+            // or the aggregator is connected to all workers via gather
+            const aggregatorLogs = successfulScatterGatherLogs.filter((l) => l.klados_id === 'II01klados_aggregator');
+            expect(aggregatorLogs).toHaveLength(1);
+        });
+        it('handles mixed success/error logs', () => {
+            const tree = buildLogTree(mixedErrorLogs);
+            expect(tree).not.toBeNull();
+            // Tree should still be buildable with errors
+            function countNodes(node) {
+                return 1 + node.children.reduce((acc, child) => acc + countNodes(child), 0);
+            }
+            const nodeCount = countNodes(tree);
+            expect(nodeCount).toBeGreaterThan(1);
+        });
+    });
+});
+//# sourceMappingURL=traverse.test.js.map

package/dist/__tests__/unit/traverse.test.js.map

@@ -0,0 +1 @@
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package/dist/__tests__/unit/validation/klados.test.d.ts

@@ -0,0 +1,16 @@
+/**
+ * Klados Validation Tests
+ *
+ * Tests for validateKladosProperties() which validates klados entity properties
+ * at creation/update time (static validation).
+ *
+ * Validation Rules:
+ * - endpoint: Required, must be valid URL
+ * - accepts.types: Required, non-empty array
+ * - accepts.cardinality: Must be 'one' or 'many'
+ * - produces.types: Required, non-empty array
+ * - produces.cardinality: Must be 'one' or 'many'
+ * - actions_required: Required, non-empty array
+ */
+export {};
+//# sourceMappingURL=klados.test.d.ts.map

package/dist/__tests__/unit/validation/klados.test.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"klados.test.d.ts","sourceRoot":"","sources":["../../../../src/__tests__/unit/validation/klados.test.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;GAaG"}