@appthreat/atom 2.1.19 → 2.2.1

package/{plugins/composer/LICENSE → LICENSE}

@@ -1,12 +1,13 @@
+MIT License
 
-Copyright (c) Nils Adermann, Jordi Boggiano
+Copyright (c) Team AppThreat
 
 Permission is hereby granted, free of charge, to any person obtaining a copy
 of this software and associated documentation files (the "Software"), to deal
 in the Software without restriction, including without limitation the rights
 to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
-copies of the Software, and to permit persons to whom the Software is furnished
-to do so, subject to the following conditions:
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
 
 The above copyright notice and this permission notice shall be included in all
 copies or substantial portions of the Software.
@@ -16,6 +17,5 @@ IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
 FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
 AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
 LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
-OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
-THE SOFTWARE.
-
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

package/README.md

@@ -1,8 +1,8 @@
 # Atom npm wrapper
 
-Atom is a novel intermediate representation for applications and a standalone tool powered by the [chen](https://github.com/AppThreat/chen) library. The intermediate representation (a network with nodes and links) is optimized for operations typically used for application analytics and machine learning, including [slicing](./specification/docs/slices.md) and [vectoring](./specification/docs/vectors.md).
+Atom is a novel intermediate representation for applications and a standalone tool powered by the [chen](https://github.com/AppThreat/chen) library. The intermediate representation (a network with nodes and links) is optimised for operations typically used for application analytics and machine learning, including [slicing](./specification/docs/slices.md) and vectoring.
 
-This package wraps the atom distributable and makes it available via the npm package registry.
+This package wraps the atom Java distributable and makes it available via the npm package registry.
 
 ## Usage
 

package/index.js

@@ -1,12 +1,12 @@
 #!/usr/bin/env node
 
-import { totalmem, platform as _platform } from "node:os";
+import { platform as _platform } from "node:os";
 import { dirname, join, delimiter } from "node:path";
 import { readFileSync } from "node:fs";
 
 import { spawnSync } from "node:child_process";
 import { fileURLToPath } from "node:url";
-import { detectJava } from "./utils.mjs";
+import { detectJava } from "@appthreat/atom-common";
 
 const isWin = _platform() === "win32";
 let url = import.meta.url;
@@ -21,13 +21,9 @@ export const ATOM_HOME = join(dirName, "plugins");
 export const APP_LIB_DIR = join(ATOM_HOME, "lib");
 export const PHP_PARSER_BIN = join(ATOM_HOME, "bin", "php-parse");
 
-// We need more memory for atom to work well
-const maxMemoryGB = Math.floor((totalmem() * 0.8) / 1024 ** 3);
-
-export const JVM_ARGS = "-XX:+UseG1GC -XX:+UseStringDeduplication";
+export const JVM_ARGS = "-XX:MinRAMPercentage=30 -XX:MaxRAMPercentage=90";
 export const JAVA_OPTS =
-  process.env?.ATOM_JVM_ARGS ||
-  `${process.env.JAVA_OPTS || ""} -Xms2G -Xmx${maxMemoryGB}G ${JVM_ARGS}`;
+  process.env?.ATOM_JVM_ARGS || `${process.env?.JAVA_OPTS || ""} ${JVM_ARGS}`;
 
 export const APP_MAIN_CLASS = "io.appthreat.atom.Atom";
 export const ATOM_VERSION = _version;

package/package.json

@@ -1,27 +1,26 @@
 {
   "name": "@appthreat/atom",
-  "version": "2.1.19",
+  "version": "2.2.1",
   "description": "Create atom (⚛) representation for your application, packages and libraries",
   "exports": "./index.js",
   "type": "module",
   "scripts": {
-    "pretty": "prettier --write *.mjs *.js --trailing-comma=none",
+    "pretty": "prettier --write *.js packages/atom-parsetools/*.js packages/atom-common/*.js packages/atom-common/*.mjs --trailing-comma=none",
     "lint": "eslint *.mjs *.js"
   },
   "dependencies": {
-    "@babel/parser": "^7.27.1",
-    "typescript": "^5.8.3",
-    "yargs": "^17.7.2"
+    "@appthreat/atom-common": "workspace:packages/atom-common",
+    "@appthreat/atom-parsetools": "workspace:packages/atom-parsetools"
   },
   "devDependencies": {
     "eslint": "8.57.0"
   },
   "bin": {
     "atom": "index.js",
-    "astgen": "astgen.js",
-    "phpastgen": "phpastgen.js",
-    "rbastgen": "rbastgen.js",
-    "scalasem": "scalasem.js"
+    "astgen": "packages/atom-parsetools/astgen.js",
+    "phpastgen": "packages/atom-parsetools/phpastgen.js",
+    "rbastgen": "packages/atom-parsetools/rbastgen.js",
+    "scalasem": "packages/atom-parsetools/scalasem.js"
   },
   "engines": {
     "node": ">=16.0.0"
@@ -39,14 +38,22 @@
     "chain"
   ],
   "author": "Team AppThreat <cloud@appthreat.com>",
-  "license": "Apache-2.0",
+  "license": "MIT",
   "bugs": {
     "url": "https://github.com/AppThreat/atom/issues"
   },
   "homepage": "https://github.com/AppThreat/atom#readme",
   "files": [
     "*.js",
-    "*.mjs",
-    "plugins/"
-  ]
+    "plugins/",
+    "LICENSE"
+  ],
+  "packageManager": "npm",
+  "workspaces": [
+    "packages/atom-parsetools",
+    "packages/atom-common"
+  ],
+  "overrides": {
+    "glob": "^11.0.2"
+  }
 }

package/packages/atom-parsetools/LICENSE

@@ -0,0 +1,21 @@
+MIT License
+
+Copyright (c) Team AppThreat
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

package/{astgen.js → packages/atom-parsetools/astgen.js}

@@ -13,7 +13,7 @@ import {
   constants,
   existsSync
 } from "fs";
-import { getAllFiles } from "./utils.mjs";
+import { getAllFiles } from "@appthreat/atom-common";
 
 const ASTGEN_VERSION = "4.0.0";
 

package/packages/atom-parsetools/index.js

@@ -0,0 +1 @@
+console.log("atom-parsetools installed successfully.");

package/{phpastgen.js → packages/atom-parsetools/phpastgen.js}

@@ -3,7 +3,7 @@
 import { dirname, join } from "node:path";
 import { spawnSync } from "node:child_process";
 import { fileURLToPath } from "node:url";
-import { detectPhp } from "./utils.mjs";
+import { detectPhp } from "@appthreat/atom-common";
 
 let url = import.meta.url;
 if (!url.startsWith("file://")) {

package/{rbastgen.js → packages/atom-parsetools/rbastgen.js}

@@ -4,7 +4,7 @@ import { existsSync } from "node:fs";
 import { dirname, join, delimiter } from "node:path";
 import { spawnSync } from "node:child_process";
 import { fileURLToPath } from "node:url";
-import { detectRuby } from "./utils.mjs";
+import { detectRuby } from "@appthreat/atom-common";
 
 let url = import.meta.url;
 if (!url.startsWith("file://")) {

package/{scalasem.js → packages/atom-parsetools/scalasem.js}

@@ -3,7 +3,7 @@
 import { tmpdir } from "node:os";
 import { basename, dirname, join, relative } from "node:path";
 import { spawnSync } from "node:child_process";
-import { detectScala, detectScalac, getAllFiles } from "./utils.mjs";
+import { detectScala, detectScalac, getAllFiles } from "@appthreat/atom-common";
 import process from "node:process";
 import {
   existsSync,

package/plugins/bin/atom

@@ -360,7 +360,7 @@ declare -r lib_dir="$(realpath "${app_home}/../lib")"
 declare -a app_mainclass=('io.appthreat.atom.Atom')
 
 declare -r script_conf_file="${app_home}/../conf/application.ini"
-declare -r app_classpath="$lib_dir/io.appthreat.atom-2.1.19-classpath.jar"
+declare -r app_classpath="$lib_dir/io.appthreat.atom-2.2.1-classpath.jar"
 
 # java_cmd is overrode in process_args when -java-home is used
 declare java_cmd=$(get_java_cmd)

package/plugins/bin/atom.bat

@@ -40,7 +40,7 @@ rem "-J" is stripped, "-D" is left as is, and everything is appended to JAVA_OPT
 set _JAVA_PARAMS=
 set _APP_ARGS=
 
-set "APP_CLASSPATH=%APP_LIB_DIR%\io.appthreat.atom-2.1.19-classpath.jar"
+set "APP_CLASSPATH=%APP_LIB_DIR%\io.appthreat.atom-2.2.1-classpath.jar"
 set "APP_MAIN_CLASS=io.appthreat.atom.Atom"
 set "SCRIPT_CONF_FILE=%APP_HOME%\conf\application.ini"
 

package/plugins/autoload.php

@@ -1,22 +0,0 @@
-<?php
-
-// autoload.php @generated by Composer
-
-if (PHP_VERSION_ID < 50600) {
-    if (!headers_sent()) {
-        header('HTTP/1.1 500 Internal Server Error');
-    }
-    $err = 'Composer 2.3.0 dropped support for autoloading on PHP <5.6 and you are running '.PHP_VERSION.', please upgrade PHP or use Composer 2.2 LTS via "composer self-update --2.2". Aborting.'.PHP_EOL;
-    if (!ini_get('display_errors')) {
-        if (PHP_SAPI === 'cli' || PHP_SAPI === 'phpdbg') {
-            fwrite(STDERR, $err);
-        } elseif (!headers_sent()) {
-            echo $err;
-        }
-    }
-    throw new RuntimeException($err);
-}
-
-require_once __DIR__ . '/composer/autoload_real.php';
-
-return ComposerAutoloaderInitf8ec96d581b5c88a936d13783175ff17::getLoader();

package/plugins/bin/bundler

@@ -1,14 +0,0 @@
-#!/usr/bin/env ruby
-# frozen_string_literal: true
-
-#
-# This file was generated by Bundler.
-#
-# The application 'bundler' is installed as part of a gem, and
-# this file is here to facilitate running it.
-#
-
-$:.unshift File.expand_path "../rubyastgen/bundle", __dir__
-
-require "bundler/setup"
-load File.expand_path "../../../../../../../../../opt/hostedtoolcache/Ruby/3.4.3/x64/lib/ruby/gems/3.4.0/gems/bundler-2.6.7/exe/bundler", __dir__

package/plugins/bin/php-parse

@@ -1,119 +0,0 @@
-#!/usr/bin/env php
-<?php
-
-/**
- * Proxy PHP file generated by Composer
- *
- * This file includes the referenced bin path (../nikic/php-parser/bin/php-parse)
- * using a stream wrapper to prevent the shebang from being output on PHP<8
- *
- * @generated
- */
-
-namespace Composer;
-
-$GLOBALS['_composer_bin_dir'] = __DIR__;
-$GLOBALS['_composer_autoload_path'] = __DIR__ . '/..'.'/autoload.php';
-
-if (PHP_VERSION_ID < 80000) {
-    if (!class_exists('Composer\BinProxyWrapper')) {
-        /**
-         * @internal
-         */
-        final class BinProxyWrapper
-        {
-            private $handle;
-            private $position;
-            private $realpath;
-
-            public function stream_open($path, $mode, $options, &$opened_path)
-            {
-                // get rid of phpvfscomposer:// prefix for __FILE__ & __DIR__ resolution
-                $opened_path = substr($path, 17);
-                $this->realpath = realpath($opened_path) ?: $opened_path;
-                $opened_path = $this->realpath;
-                $this->handle = fopen($this->realpath, $mode);
-                $this->position = 0;
-
-                return (bool) $this->handle;
-            }
-
-            public function stream_read($count)
-            {
-                $data = fread($this->handle, $count);
-
-                if ($this->position === 0) {
-                    $data = preg_replace('{^#!.*\r?\n}', '', $data);
-                }
-
-                $this->position += strlen($data);
-
-                return $data;
-            }
-
-            public function stream_cast($castAs)
-            {
-                return $this->handle;
-            }
-
-            public function stream_close()
-            {
-                fclose($this->handle);
-            }
-
-            public function stream_lock($operation)
-            {
-                return $operation ? flock($this->handle, $operation) : true;
-            }
-
-            public function stream_seek($offset, $whence)
-            {
-                if (0 === fseek($this->handle, $offset, $whence)) {
-                    $this->position = ftell($this->handle);
-                    return true;
-                }
-
-                return false;
-            }
-
-            public function stream_tell()
-            {
-                return $this->position;
-            }
-
-            public function stream_eof()
-            {
-                return feof($this->handle);
-            }
-
-            public function stream_stat()
-            {
-                return array();
-            }
-
-            public function stream_set_option($option, $arg1, $arg2)
-            {
-                return true;
-            }
-
-            public function url_stat($path, $flags)
-            {
-                $path = substr($path, 17);
-                if (file_exists($path)) {
-                    return stat($path);
-                }
-
-                return false;
-            }
-        }
-    }
-
-    if (
-        (function_exists('stream_get_wrappers') && in_array('phpvfscomposer', stream_get_wrappers(), true))
-        || (function_exists('stream_wrapper_register') && stream_wrapper_register('phpvfscomposer', 'Composer\BinProxyWrapper'))
-    ) {
-        return include("phpvfscomposer://" . __DIR__ . '/..'.'/nikic/php-parser/bin/php-parse');
-    }
-}
-
-return include __DIR__ . '/..'.'/nikic/php-parser/bin/php-parse';

package/plugins/bin/ruby_ast_gen

@@ -1,14 +0,0 @@
-#!/usr/bin/env ruby
-# frozen_string_literal: true
-
-#
-# This file was generated by Bundler.
-#
-# The application 'ruby_ast_gen' is installed as part of a gem, and
-# this file is here to facilitate running it.
-#
-
-$:.unshift File.expand_path "../rubyastgen/bundle", __dir__
-
-require "bundler/setup"
-load File.expand_path "../rubyastgen/bundle/ruby/3.4.0/bundler/gems/ruby_ast_gen-d8b5c5740b5a/exe/ruby_ast_gen", __dir__