npm - @apollo-annotation/shared - Versions diffs - 1.1.0 → 1.1.2 - Mend

@apollo-annotation/shared 1.1.0 → 1.1.2

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (10) hide show

package/dist/GFF3/gff3ToAnnotationFeature.js +5 -0
package/dist/GFF3/gff3ToAnnotationFeature.js.map +1 -1
package/dist/GFF3/gff3ToAnnotationFeature.test.js +6 -0
package/dist/GFF3/gff3ToAnnotationFeature.test.js.map +1 -1
package/dist/tsconfig.tsbuildinfo +1 -1
package/package.json +4 -4
package/src/GFF3/gff3ToAnnotationFeature.test.ts +6 -0
package/src/GFF3/gff3ToAnnotationFeature.ts +5 -0
package/test_data/mixed_order.gff3 +13 -0
package/test_data/mixed_order.json +87 -0

package/dist/GFF3/gff3ToAnnotationFeature.js CHANGED Viewed

@@ -135,7 +135,12 @@ function convertChildren(gff3Feature, refSeq, featureIds) {
     const cdsFeatures = [];
     const exonFeatures = [];
     const utrFeatures = [];
+    const seenChildFeatures = new Set();
     for (const childFeature of childFeatures) {
+        if (seenChildFeatures.has(childFeature)) {
+            continue;
+        }
+        seenChildFeatures.add(childFeature);
         const [firstChildFeatureLocation] = childFeature;
         if (firstChildFeatureLocation.type === 'exon') {
             exonFeatures.push(childFeature);

package/dist/GFF3/gff3ToAnnotationFeature.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/dist/GFF3/gff3ToAnnotationFeature.test.js CHANGED Viewed

@@ -95,6 +95,12 @@ describe('gff3ToAnnotationFeature examples', () => {
         assert.equal(txt.match(/intron/g), null);
         assert.equal(txt.match(/_codon/g), null);
     });
+    it('Convert noncontiguous CDS lines', () => {
+        const [gffFeature] = readFeatureFile('test_data/mixed_order.gff3');
+        const actual = gff3ToAnnotationFeature(gffFeature);
+        const expected = readAnnotationFeatureSnapshot('test_data/mixed_order.json');
+        compareFeatures(actual, expected);
+    });
 });
 describe('CDS without exons', () => {
     it('Convert mRNA with CDS but without exon', () => {

package/dist/GFF3/gff3ToAnnotationFeature.test.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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