@apollo-annotation/shared 0.3.9 → 0.3.11

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Files changed (38) hide show
  1. package/dist/Changes/AddFeatureChange.js +13 -2
  2. package/dist/Changes/AddFeatureChange.js.map +1 -1
  3. package/dist/Changes/DeleteFeatureChange.js +19 -0
  4. package/dist/Changes/DeleteFeatureChange.js.map +1 -1
  5. package/dist/Changes/FeatureAttributeChange.js +11 -0
  6. package/dist/Changes/FeatureAttributeChange.js.map +1 -1
  7. package/dist/Changes/FromFileBaseChange.d.ts +2 -0
  8. package/dist/Changes/FromFileBaseChange.js +20 -5
  9. package/dist/Changes/FromFileBaseChange.js.map +1 -1
  10. package/dist/GFF3/annotationFeatureToGFF3.test.js +19 -5
  11. package/dist/GFF3/annotationFeatureToGFF3.test.js.map +1 -1
  12. package/dist/GFF3/gff3ToAnnotationFeature.d.ts +1 -1
  13. package/dist/GFF3/gff3ToAnnotationFeature.js +8 -11
  14. package/dist/GFF3/gff3ToAnnotationFeature.js.map +1 -1
  15. package/dist/GFF3/gff3ToAnnotationFeature.test.d.ts +1 -2
  16. package/dist/GFF3/gff3ToAnnotationFeature.test.js +23 -96
  17. package/dist/GFF3/gff3ToAnnotationFeature.test.js.map +1 -1
  18. package/dist/GFF3/testUtil.d.ts +6 -0
  19. package/dist/GFF3/testUtil.js +24 -0
  20. package/dist/GFF3/testUtil.js.map +1 -0
  21. package/dist/tsconfig.tsbuildinfo +1 -1
  22. package/package.json +4 -4
  23. package/src/Changes/AddFeatureChange.ts +14 -2
  24. package/src/Changes/DeleteFeatureChange.ts +18 -0
  25. package/src/Changes/FeatureAttributeChange.ts +13 -0
  26. package/src/Changes/FromFileBaseChange.ts +22 -10
  27. package/src/GFF3/annotationFeatureToGFF3.test.ts +24 -2
  28. package/src/GFF3/gff3ToAnnotationFeature.test.ts +24 -95
  29. package/src/GFF3/gff3ToAnnotationFeature.ts +6 -15
  30. package/src/GFF3/testUtil.ts +25 -0
  31. package/test_data/gene_with_two_cds.gff3 +6 -0
  32. package/test_data/gene_with_two_cds.json +69 -0
  33. package/test_data/single_feature_no_children.gff3 +1 -0
  34. package/test_data/single_feature_no_children.json +14 -0
  35. package/test_data/single_feature_two_children.gff3 +3 -0
  36. package/test_data/single_feature_two_children.json +44 -0
  37. package/test_data/two_cds.gff3 +0 -9
  38. package/test_data/two_cds.json +0 -67
package/test_data/two_cds.json DELETED
@@ -1,67 +0,0 @@
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- {
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- "_id": "66d70f3b9c7a7460925687a3",
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- "refSeq": "chr1",
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- "type": "gene",
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- "min": 999,
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- "max": 9000,
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- "strand": 1,
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- "children": {
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- "66d70f3b9c7a7460925687a2": {
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- "_id": "66d70f3b9c7a7460925687a2",
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- "refSeq": "chr1",
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- "type": "mRNA",
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- "min": 1049,
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- "max": 9000,
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- "strand": 1,
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- "children": {
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- "66d70f3b9c7a74609256879f": {
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- "_id": "66d70f3b9c7a74609256879f",
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- "refSeq": "chr1",
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- "type": "exon",
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- "min": 1049,
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- "max": 1500,
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- "strand": 1,
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- "attributes": {
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- "gff_id": ["exon10001"],
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- "testid": ["t007"]
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- }
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- },
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- "66d70f3b9c7a7460925687a0": {
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- "_id": "66d70f3b9c7a7460925687a0",
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- "refSeq": "chr1",
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- "type": "exon",
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- "min": 4999,
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- "max": 5500,
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- "strand": 1,
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- "attributes": {
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- "gff_id": ["exon10004"],
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- "testid": ["t010"]
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- }
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- },
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- "66d70f3b9c7a7460925687a1": {
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- "_id": "66d70f3b9c7a7460925687a1",
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- "refSeq": "chr1",
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- "type": "CDS",
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- "min": 1200,
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- "max": 5000,
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- "strand": 1,
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- "attributes": {
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- "gff_id": ["cds10001"],
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- "gff_name": ["edenprotein.1"],
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- "testid": ["t012", "t013", "t014"]
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- }
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- }
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- },
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- "attributes": {
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- "gff_id": ["mRNA10001"],
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- "gff_name": ["EDEN.1"],
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- "testid": ["t004", "t001", "t004"]
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- }
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- }
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- },
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- "attributes": {
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- "gff_id": ["gene10001"],
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- "gff_name": ["EDEN"],
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- "testid": ["t003"]
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- }
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- }