@apollo-annotation/shared 0.3.9 → 0.3.10

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Files changed (32) hide show
  1. package/dist/Changes/AddFeatureChange.js +9 -2
  2. package/dist/Changes/AddFeatureChange.js.map +1 -1
  3. package/dist/Changes/FromFileBaseChange.d.ts +2 -0
  4. package/dist/Changes/FromFileBaseChange.js +20 -5
  5. package/dist/Changes/FromFileBaseChange.js.map +1 -1
  6. package/dist/GFF3/annotationFeatureToGFF3.test.js +19 -5
  7. package/dist/GFF3/annotationFeatureToGFF3.test.js.map +1 -1
  8. package/dist/GFF3/gff3ToAnnotationFeature.d.ts +1 -1
  9. package/dist/GFF3/gff3ToAnnotationFeature.js +8 -11
  10. package/dist/GFF3/gff3ToAnnotationFeature.js.map +1 -1
  11. package/dist/GFF3/gff3ToAnnotationFeature.test.d.ts +1 -2
  12. package/dist/GFF3/gff3ToAnnotationFeature.test.js +23 -96
  13. package/dist/GFF3/gff3ToAnnotationFeature.test.js.map +1 -1
  14. package/dist/GFF3/testUtil.d.ts +6 -0
  15. package/dist/GFF3/testUtil.js +24 -0
  16. package/dist/GFF3/testUtil.js.map +1 -0
  17. package/dist/tsconfig.tsbuildinfo +1 -1
  18. package/package.json +4 -4
  19. package/src/Changes/AddFeatureChange.ts +10 -2
  20. package/src/Changes/FromFileBaseChange.ts +22 -10
  21. package/src/GFF3/annotationFeatureToGFF3.test.ts +24 -2
  22. package/src/GFF3/gff3ToAnnotationFeature.test.ts +24 -95
  23. package/src/GFF3/gff3ToAnnotationFeature.ts +6 -15
  24. package/src/GFF3/testUtil.ts +25 -0
  25. package/test_data/gene_with_two_cds.gff3 +6 -0
  26. package/test_data/gene_with_two_cds.json +69 -0
  27. package/test_data/single_feature_no_children.gff3 +1 -0
  28. package/test_data/single_feature_no_children.json +14 -0
  29. package/test_data/single_feature_two_children.gff3 +3 -0
  30. package/test_data/single_feature_two_children.json +44 -0
  31. package/test_data/two_cds.gff3 +0 -9
  32. package/test_data/two_cds.json +0 -67
package/dist/GFF3/testUtil.d.ts ADDED
@@ -0,0 +1,6 @@
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+ import { type AnnotationFeatureSnapshot } from '@apollo-annotation/mst';
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+ export declare function readAnnotationFeatureSnapshot(fn: string): AnnotationFeatureSnapshot;
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+ export declare const testCases: {
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+ filenameStem: string;
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+ description: string;
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+ }[];
package/dist/GFF3/testUtil.js ADDED
@@ -0,0 +1,24 @@
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+ "use strict";
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+ Object.defineProperty(exports, "__esModule", { value: true });
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+ exports.testCases = void 0;
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+ exports.readAnnotationFeatureSnapshot = readAnnotationFeatureSnapshot;
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+ const node_fs_1 = require("node:fs");
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+ function readAnnotationFeatureSnapshot(fn) {
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+ const lines = (0, node_fs_1.readFileSync)(fn).toString();
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+ return JSON.parse(lines);
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+ }
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+ exports.testCases = [
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+ {
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+ filenameStem: 'single_feature_no_children',
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+ description: 'there is a single feature with no children',
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+ },
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+ {
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+ filenameStem: 'single_feature_two_children',
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+ description: 'there is a single feature with two children',
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+ },
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+ {
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+ filenameStem: 'gene_with_two_cds',
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+ description: 'Gene with two CDS',
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+ },
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+ ];
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+ //# sourceMappingURL=testUtil.js.map
package/dist/GFF3/testUtil.js.map ADDED
@@ -0,0 +1 @@
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