@apollo-annotation/shared 0.3.8 → 0.3.9
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/Changes/AddAssemblyAndFeaturesFromFileChange.d.ts +3 -0
- package/dist/Changes/AddAssemblyAndFeaturesFromFileChange.js +5 -4
- package/dist/Changes/AddAssemblyAndFeaturesFromFileChange.js.map +1 -1
- package/dist/Changes/AddFeatureChange.js +14 -2
- package/dist/Changes/AddFeatureChange.js.map +1 -1
- package/dist/Changes/AddFeaturesFromFileChange.d.ts +3 -0
- package/dist/Changes/AddFeaturesFromFileChange.js +5 -2
- package/dist/Changes/AddFeaturesFromFileChange.js.map +1 -1
- package/dist/Changes/AddRefSeqAliasesChange.js +1 -4
- package/dist/Changes/AddRefSeqAliasesChange.js.map +1 -1
- package/dist/Changes/FromFileBaseChange.js +6 -6
- package/dist/Changes/FromFileBaseChange.js.map +1 -1
- package/dist/Checks/CDSCheck.js +5 -4
- package/dist/Checks/CDSCheck.js.map +1 -1
- package/dist/Checks/TranscriptCheck.js +12 -12
- package/dist/Checks/TranscriptCheck.js.map +1 -1
- package/dist/Checks/util.d.ts +2 -0
- package/dist/Checks/util.js +15 -0
- package/dist/Checks/util.js.map +1 -0
- package/dist/GFF3/annotationFeatureToGFF3.js +3 -1
- package/dist/GFF3/annotationFeatureToGFF3.js.map +1 -1
- package/dist/GFF3/gff3ToAnnotationFeature.js +1 -1
- package/dist/GFF3/gff3ToAnnotationFeature.js.map +1 -1
- package/dist/GFF3/gff3ToAnnotationFeature.test.js +3 -3
- package/dist/GFF3/gff3ToAnnotationFeature.test.js.map +1 -1
- package/dist/tsconfig.tsbuildinfo +1 -1
- package/package.json +6 -6
- package/src/Changes/AddAssemblyAndFeaturesFromFileChange.ts +6 -5
- package/src/Changes/AddFeatureChange.ts +16 -2
- package/src/Changes/AddFeaturesFromFileChange.ts +6 -1
- package/src/Changes/AddRefSeqAliasesChange.ts +1 -5
- package/src/Changes/FromFileBaseChange.ts +6 -6
- package/src/Checks/CDSCheck.ts +6 -4
- package/src/Checks/TranscriptCheck.ts +11 -12
- package/src/Checks/util.ts +13 -0
- package/src/GFF3/annotationFeatureToGFF3.ts +4 -1
- package/src/GFF3/gff3ToAnnotationFeature.test.ts +3 -3
- package/src/GFF3/gff3ToAnnotationFeature.ts +1 -1
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@@ -5,7 +5,7 @@ const tslib_1 = require("tslib");
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/* eslint-disable @typescript-eslint/no-floating-promises */
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const node_fs_1 = require("node:fs");
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const node_test_1 = require("node:test");
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-
const gff_1 =
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const gff_1 = require("@gmod/gff");
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const chai_1 = require("chai");
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const chai_exclude_1 = tslib_1.__importDefault(require("chai-exclude"));
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const gff3ToAnnotationFeature_1 = require("./gff3ToAnnotationFeature");
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@@ -96,7 +96,7 @@ function readFeatureFile(fn) {
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feature.push(line);
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}
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}
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const inGff = gff_1.
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const inGff = (0, gff_1.parseStringSync)(feature.join('\n'));
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return inGff;
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}
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function readAnnotationFeatureSnapshot(fn) {
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@@ -184,7 +184,7 @@ const [ex1, , ex2, , ex3, , ex4] = readFeatureFile('test_data/gene_representatio
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for (const testCase of testCases) {
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const [description, featureLine, convertedFeature] = testCase;
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(0, node_test_1.it)(`converts ${description}`, () => {
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const gff3Feature = gff_1.
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const gff3Feature = (0, gff_1.parseStringSync)(featureLine, {
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parseSequences: false,
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});
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const feature = (0, gff3ToAnnotationFeature_1.gff3ToAnnotationFeature)(gff3Feature[0]);
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@@ -1 +1 @@
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1
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-
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1
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+
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