@apollo-annotation/shared 0.3.6 → 0.3.7

package/dist/Changes/SplitExonChange.d.ts

@@ -0,0 +1,33 @@
+import { type ChangeOptions, type ClientDataStore, FeatureChange, type LocalGFF3DataStore, type SerializedFeatureChange, type ServerDataStore } from '@apollo-annotation/common';
+import { type AnnotationFeatureSnapshot } from '@apollo-annotation/mst';
+import { UndoSplitExonChange } from './UndoSplitExonChange';
+interface SerializedSplitExonChangeBase extends SerializedFeatureChange {
+    typeName: 'SplitExonChange';
+}
+export interface SplitExonChangeDetails {
+    exonToBeSplit: AnnotationFeatureSnapshot;
+    parentFeatureId: string;
+    upstreamCut: number;
+    downstreamCut: number;
+    leftExonId: string;
+    rightExonId: string;
+}
+interface SerializedSplitExonChangeSingle extends SerializedSplitExonChangeBase, SplitExonChangeDetails {
+}
+interface SerializedSplitExonChangeMultiple extends SerializedSplitExonChangeBase {
+    changes: SplitExonChangeDetails[];
+}
+export type SerializedSplitExonChange = SerializedSplitExonChangeSingle | SerializedSplitExonChangeMultiple;
+export declare class SplitExonChange extends FeatureChange {
+    typeName: "SplitExonChange";
+    changes: SplitExonChangeDetails[];
+    constructor(json: SerializedSplitExonChange, options?: ChangeOptions);
+    get notification(): string;
+    toJSON(): SerializedSplitExonChange;
+    executeOnServer(backend: ServerDataStore): Promise<void>;
+    executeOnLocalGFF3(_backend: LocalGFF3DataStore): Promise<void>;
+    executeOnClient(dataStore: ClientDataStore): Promise<void>;
+    getInverse(): UndoSplitExonChange;
+    makeSplitExons(exonToBeSplit: AnnotationFeatureSnapshot, upstreamCut: number, downstreamCut: number, leftExonId: string, rightExonId: string): AnnotationFeatureSnapshot[];
+}
+export {};

package/dist/Changes/SplitExonChange.js

@@ -0,0 +1,142 @@
+"use strict";
+/* eslint-disable @typescript-eslint/require-await */
+/* eslint-disable @typescript-eslint/no-unsafe-assignment */
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.SplitExonChange = void 0;
+const common_1 = require("@apollo-annotation/common");
+const DeleteFeatureChange_1 = require("./DeleteFeatureChange");
+const UndoSplitExonChange_1 = require("./UndoSplitExonChange");
+class SplitExonChange extends common_1.FeatureChange {
+    typeName = 'SplitExonChange';
+    changes;
+    constructor(json, options) {
+        super(json, options);
+        this.changes = 'changes' in json ? json.changes : [json];
+    }
+    // eslint-disable-next-line @typescript-eslint/class-literal-property-style
+    get notification() {
+        return 'Exon successfully split';
+    }
+    toJSON() {
+        const { assembly, changedIds, changes, typeName } = this;
+        if (changes.length === 1) {
+            const [{ exonToBeSplit, parentFeatureId, upstreamCut, downstreamCut, leftExonId, rightExonId, },] = changes;
+            return {
+                typeName,
+                changedIds,
+                assembly,
+                exonToBeSplit,
+                parentFeatureId,
+                upstreamCut,
+                downstreamCut,
+                leftExonId,
+                rightExonId,
+            };
+        }
+        return { typeName, changedIds, assembly, changes };
+    }
+    async executeOnServer(backend) {
+        const { featureModel, session } = backend;
+        const { changes, logger } = this;
+        for (const change of changes) {
+            const { exonToBeSplit, parentFeatureId, upstreamCut, downstreamCut, leftExonId, rightExonId, } = change;
+            const topLevelFeature = await featureModel
+                .findOne({ allIds: exonToBeSplit._id })
+                .session(session)
+                .exec();
+            if (!topLevelFeature) {
+                const errMsg = `*** ERROR: The following featureId was not found in database ='${exonToBeSplit._id}'`;
+                logger.error(errMsg);
+                throw new Error(errMsg);
+            }
+            const tx = this.getFeatureFromId(topLevelFeature, parentFeatureId);
+            if (!tx?.children) {
+                throw new Error('ERROR: There should be at least one child (i.e. the exon to be split)');
+            }
+            const [leftExon, rightExon] = this.makeSplitExons(exonToBeSplit, upstreamCut, downstreamCut, leftExonId, rightExonId);
+            tx.children.set(leftExon._id, {
+                allIds: [],
+                ...leftExon,
+                // eslint-disable-next-line @typescript-eslint/ban-ts-comment
+                // @ts-expect-error
+                _id: leftExon._id,
+            });
+            tx.children.set(rightExon._id, {
+                allIds: [],
+                ...rightExon,
+                // eslint-disable-next-line @typescript-eslint/ban-ts-comment
+                // @ts-expect-error
+                _id: rightExon._id,
+            });
+            // Child features should be sorted for click and drag of gene glyphs to work properly
+            tx.children = new Map([...tx.children.entries()].sort((a, b) => a[1].min - b[1].min));
+            const deletedIds = (0, DeleteFeatureChange_1.findAndDeleteChildFeature)(topLevelFeature, exonToBeSplit._id, this);
+            deletedIds.push(exonToBeSplit._id);
+            topLevelFeature.allIds = topLevelFeature.allIds.filter((id) => !deletedIds.includes(id));
+            topLevelFeature.allIds.push(leftExon._id, rightExon._id);
+            await topLevelFeature.save();
+        }
+    }
+    async executeOnLocalGFF3(_backend) {
+        throw new Error('executeOnLocalGFF3 not implemented');
+    }
+    async executeOnClient(dataStore) {
+        // eslint-disable-next-line @typescript-eslint/no-unnecessary-condition
+        if (!dataStore) {
+            throw new Error('No data store');
+        }
+        for (const [idx] of this.changedIds.entries()) {
+            const { exonToBeSplit, parentFeatureId, upstreamCut, downstreamCut, leftExonId, rightExonId, } = this.changes[idx];
+            if (!parentFeatureId) {
+                throw new Error('TODO: Split exon without parent');
+            }
+            const [leftExon, rightExon] = this.makeSplitExons(exonToBeSplit, upstreamCut, downstreamCut, leftExonId, rightExonId);
+            const parentFeature = dataStore.getFeature(parentFeatureId);
+            if (!parentFeature) {
+                throw new Error(`Could not find parent feature "${parentFeatureId}"`);
+            }
+            parentFeature.addChild(leftExon);
+            parentFeature.addChild(rightExon);
+            if (dataStore.getFeature(exonToBeSplit._id)) {
+                dataStore.deleteFeature(exonToBeSplit._id);
+            }
+        }
+    }
+    getInverse() {
+        const { assembly, changedIds, changes, logger } = this;
+        const inverseChangedIds = [...changedIds].reverse();
+        const inverseChanges = [...changes].reverse().map((splitExonChange) => ({
+            exonToRestore: splitExonChange.exonToBeSplit,
+            parentFeatureId: splitExonChange.parentFeatureId,
+            idsToDelete: [splitExonChange.leftExonId, splitExonChange.rightExonId],
+            upstreamCut: splitExonChange.upstreamCut,
+            downstreamCut: splitExonChange.downstreamCut,
+            leftExonId: splitExonChange.leftExonId,
+            rightExonId: splitExonChange.rightExonId,
+        }));
+        logger.debug?.(`INVERSE CHANGE '${JSON.stringify(inverseChanges)}'`);
+        return new UndoSplitExonChange_1.UndoSplitExonChange({
+            changedIds: inverseChangedIds,
+            typeName: 'UndoSplitExonChange',
+            changes: inverseChanges,
+            assembly,
+        }, { logger });
+    }
+    makeSplitExons(exonToBeSplit, upstreamCut, downstreamCut, leftExonId, rightExonId) {
+        // eslint-disable-next-line unicorn/prefer-structured-clone
+        const exon = JSON.parse(JSON.stringify(exonToBeSplit));
+        // eslint-disable-next-line @typescript-eslint/no-unsafe-member-access
+        delete exon.attributes._id;
+        // eslint-disable-next-line @typescript-eslint/no-unsafe-member-access
+        delete exon.attributes.gff_id;
+        const leftExon = structuredClone(exon);
+        leftExon._id = leftExonId;
+        leftExon.max = upstreamCut;
+        const rightExon = structuredClone(exon);
+        rightExon.min = downstreamCut;
+        rightExon._id = rightExonId;
+        return [leftExon, rightExon];
+    }
+}
+exports.SplitExonChange = SplitExonChange;
+//# sourceMappingURL=SplitExonChange.js.map

package/dist/Changes/SplitExonChange.js.map

@@ -0,0 +1 @@
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package/dist/Changes/UndoMergeExonsChange.d.ts

@@ -0,0 +1,27 @@
+import { type ChangeOptions, type ClientDataStore, FeatureChange, type LocalGFF3DataStore, type SerializedFeatureChange, type ServerDataStore } from '@apollo-annotation/common';
+import { type AnnotationFeatureSnapshot } from '@apollo-annotation/mst';
+import { MergeExonsChange } from './MergeExonsChange';
+interface SerializedUndoMergeExonsChangeBase extends SerializedFeatureChange {
+    typeName: 'UndoMergeExonsChange';
+}
+export interface UndoMergeExonsChangeDetails {
+    exonsToRestore: AnnotationFeatureSnapshot[];
+    parentFeatureId: string;
+}
+interface SerializedUndoMergeExonsChangeSingle extends SerializedUndoMergeExonsChangeBase, UndoMergeExonsChangeDetails {
+}
+interface SerializedUndoMergeExonsChangeMultiple extends SerializedUndoMergeExonsChangeBase {
+    changes: UndoMergeExonsChangeDetails[];
+}
+export type SerializedUndoMergeExonsChange = SerializedUndoMergeExonsChangeSingle | SerializedUndoMergeExonsChangeMultiple;
+export declare class UndoMergeExonsChange extends FeatureChange {
+    typeName: "UndoMergeExonsChange";
+    changes: UndoMergeExonsChangeDetails[];
+    constructor(json: SerializedUndoMergeExonsChange, options?: ChangeOptions);
+    toJSON(): SerializedUndoMergeExonsChange;
+    executeOnServer(backend: ServerDataStore): Promise<void>;
+    executeOnLocalGFF3(_backend: LocalGFF3DataStore): Promise<void>;
+    executeOnClient(dataStore: ClientDataStore): Promise<void>;
+    getInverse(): MergeExonsChange;
+}
+export {};

package/dist/Changes/UndoMergeExonsChange.js

@@ -0,0 +1,104 @@
+"use strict";
+/* eslint-disable @typescript-eslint/require-await */
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.UndoMergeExonsChange = void 0;
+const common_1 = require("@apollo-annotation/common");
+const MergeExonsChange_1 = require("./MergeExonsChange");
+class UndoMergeExonsChange extends common_1.FeatureChange {
+    typeName = 'UndoMergeExonsChange';
+    changes;
+    constructor(json, options) {
+        super(json, options);
+        this.changes = 'changes' in json ? json.changes : [json];
+    }
+    toJSON() {
+        const { assembly, changedIds, changes, typeName } = this;
+        if (changes.length === 1) {
+            const [{ exonsToRestore, parentFeatureId }] = changes;
+            return {
+                typeName,
+                changedIds,
+                assembly,
+                exonsToRestore,
+                parentFeatureId,
+            };
+        }
+        return { typeName, changedIds, assembly, changes };
+    }
+    async executeOnServer(backend) {
+        const { featureModel, session } = backend;
+        const { changes } = this;
+        for (const change of changes) {
+            const { exonsToRestore, parentFeatureId } = change;
+            if (exonsToRestore.length !== 2) {
+                throw new Error(`Expected exactly two exons to restore. Got :${exonsToRestore.length}`);
+            }
+            const topLevelFeature = await featureModel
+                .findOne({ allIds: parentFeatureId })
+                .session(session)
+                .exec();
+            if (!topLevelFeature) {
+                throw new Error(`Could not find feature with ID "${parentFeatureId}"`);
+            }
+            const parentFeature = this.getFeatureFromId(topLevelFeature, parentFeatureId);
+            if (!parentFeature) {
+                throw new Error(`Could not find feature with ID "${parentFeatureId}" in feature "${topLevelFeature._id.toString()}"`);
+            }
+            if (!parentFeature.children) {
+                parentFeature.children = new Map();
+            }
+            for (const exon of exonsToRestore) {
+                this.addChild(parentFeature, exon);
+                const childIds = this.getChildFeatureIds(exon);
+                topLevelFeature.allIds.push(exon._id, ...childIds);
+            }
+            await topLevelFeature.save();
+        }
+    }
+    async executeOnLocalGFF3(_backend) {
+        throw new Error('executeOnLocalGFF3 not implemented');
+    }
+    async executeOnClient(dataStore) {
+        // eslint-disable-next-line @typescript-eslint/no-unnecessary-condition
+        if (!dataStore) {
+            throw new Error('No data store');
+        }
+        const { changes } = this;
+        for (const change of changes) {
+            const { exonsToRestore, parentFeatureId } = change;
+            if (!parentFeatureId) {
+                throw new Error('Parent ID is missing');
+            }
+            const parentFeature = dataStore.getFeature(parentFeatureId);
+            if (!parentFeature) {
+                throw new Error(`Could not find parent feature "${parentFeatureId}"`);
+            }
+            // create an ID for the parent feature if it does not have one
+            if (!parentFeature.attributes.get('_id')) {
+                parentFeature.setAttribute('_id', [parentFeature._id]);
+            }
+            for (const exon of exonsToRestore) {
+                parentFeature.addChild(exon);
+            }
+        }
+    }
+    getInverse() {
+        const { assembly, changedIds, changes, logger } = this;
+        const inverseChangedIds = [...changedIds].reverse();
+        const inverseChanges = [...changes]
+            .reverse()
+            .map((undoMergeExonsChange) => ({
+            firstExon: undoMergeExonsChange.exonsToRestore[0],
+            secondExon: undoMergeExonsChange.exonsToRestore[1],
+            parentFeatureId: undoMergeExonsChange.parentFeatureId,
+        }));
+        return new MergeExonsChange_1.MergeExonsChange({
+            changedIds: inverseChangedIds,
+            typeName: 'MergeExonsChange',
+            changes: inverseChanges,
+            assembly,
+        }, { logger });
+    }
+}
+exports.UndoMergeExonsChange = UndoMergeExonsChange;
+//# sourceMappingURL=UndoMergeExonsChange.js.map

package/dist/Changes/UndoMergeExonsChange.js.map

@@ -0,0 +1 @@
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package/dist/Changes/UndoMergeTranscriptsChange.d.ts

@@ -0,0 +1,27 @@
+import { type ChangeOptions, type ClientDataStore, FeatureChange, type LocalGFF3DataStore, type SerializedFeatureChange, type ServerDataStore } from '@apollo-annotation/common';
+import { type AnnotationFeatureSnapshot } from '@apollo-annotation/mst';
+import { MergeTranscriptsChange } from './MergeTranscriptsChange';
+interface SerializedUndoMergeTranscriptsChangeBase extends SerializedFeatureChange {
+    typeName: 'UndoMergeTranscriptsChange';
+}
+export interface UndoMergeTranscriptsChangeDetails {
+    transcriptsToRestore: AnnotationFeatureSnapshot[];
+    parentFeatureId: string;
+}
+interface SerializedUndoMergeTranscriptsChangeSingle extends SerializedUndoMergeTranscriptsChangeBase, UndoMergeTranscriptsChangeDetails {
+}
+interface SerializedUndoMergeTranscriptsChangeMultiple extends SerializedUndoMergeTranscriptsChangeBase {
+    changes: UndoMergeTranscriptsChangeDetails[];
+}
+export type SerializedUndoMergeTranscriptsChange = SerializedUndoMergeTranscriptsChangeSingle | SerializedUndoMergeTranscriptsChangeMultiple;
+export declare class UndoMergeTranscriptsChange extends FeatureChange {
+    typeName: "UndoMergeTranscriptsChange";
+    changes: UndoMergeTranscriptsChangeDetails[];
+    constructor(json: SerializedUndoMergeTranscriptsChange, options?: ChangeOptions);
+    toJSON(): SerializedUndoMergeTranscriptsChange;
+    executeOnServer(backend: ServerDataStore): Promise<void>;
+    executeOnLocalGFF3(_backend: LocalGFF3DataStore): Promise<void>;
+    executeOnClient(dataStore: ClientDataStore): Promise<void>;
+    getInverse(): MergeTranscriptsChange;
+}
+export {};

package/dist/Changes/UndoMergeTranscriptsChange.js

@@ -0,0 +1,104 @@
+"use strict";
+/* eslint-disable @typescript-eslint/require-await */
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.UndoMergeTranscriptsChange = void 0;
+const common_1 = require("@apollo-annotation/common");
+const MergeTranscriptsChange_1 = require("./MergeTranscriptsChange");
+class UndoMergeTranscriptsChange extends common_1.FeatureChange {
+    typeName = 'UndoMergeTranscriptsChange';
+    changes;
+    constructor(json, options) {
+        super(json, options);
+        this.changes = 'changes' in json ? json.changes : [json];
+    }
+    toJSON() {
+        const { assembly, changedIds, changes, typeName } = this;
+        if (changes.length === 1) {
+            const [{ transcriptsToRestore, parentFeatureId }] = changes;
+            return {
+                typeName,
+                changedIds,
+                assembly,
+                transcriptsToRestore,
+                parentFeatureId,
+            };
+        }
+        return { typeName, changedIds, assembly, changes };
+    }
+    async executeOnServer(backend) {
+        const { featureModel, session } = backend;
+        const { changes } = this;
+        for (const change of changes) {
+            const { transcriptsToRestore, parentFeatureId } = change;
+            if (transcriptsToRestore.length !== 2) {
+                throw new Error(`Expected exactly two transcripts to restore. Got :${transcriptsToRestore.length}`);
+            }
+            const topLevelFeature = await featureModel
+                .findOne({ allIds: parentFeatureId })
+                .session(session)
+                .exec();
+            if (!topLevelFeature) {
+                throw new Error(`Could not find feature with ID "${parentFeatureId}"`);
+            }
+            const parentFeature = this.getFeatureFromId(topLevelFeature, parentFeatureId);
+            if (!parentFeature) {
+                throw new Error(`Could not find feature with ID "${parentFeatureId}" in feature "${topLevelFeature._id.toString()}"`);
+            }
+            if (!parentFeature.children) {
+                parentFeature.children = new Map();
+            }
+            for (const transcript of transcriptsToRestore) {
+                this.addChild(parentFeature, transcript);
+                const childIds = this.getChildFeatureIds(transcript);
+                topLevelFeature.allIds.push(transcript._id, ...childIds);
+            }
+            await topLevelFeature.save();
+        }
+    }
+    async executeOnLocalGFF3(_backend) {
+        throw new Error('executeOnLocalGFF3 not implemented');
+    }
+    async executeOnClient(dataStore) {
+        // eslint-disable-next-line @typescript-eslint/no-unnecessary-condition
+        if (!dataStore) {
+            throw new Error('No data store');
+        }
+        const { changes } = this;
+        for (const change of changes) {
+            const { transcriptsToRestore, parentFeatureId } = change;
+            if (!parentFeatureId) {
+                throw new Error('Parent ID is missing');
+            }
+            const parentFeature = dataStore.getFeature(parentFeatureId);
+            if (!parentFeature) {
+                throw new Error(`Could not find parent feature "${parentFeatureId}"`);
+            }
+            // create an ID for the parent feature if it does not have one
+            if (!parentFeature.attributes.get('_id')) {
+                parentFeature.setAttribute('_id', [parentFeature._id]);
+            }
+            for (const transcript of transcriptsToRestore) {
+                parentFeature.addChild(transcript);
+            }
+        }
+    }
+    getInverse() {
+        const { assembly, changedIds, changes, logger } = this;
+        const inverseChangedIds = [...changedIds].reverse();
+        const inverseChanges = [...changes]
+            .reverse()
+            .map((undoMergeTranscriptsChange) => ({
+            firstTranscript: undoMergeTranscriptsChange.transcriptsToRestore[0],
+            secondTranscript: undoMergeTranscriptsChange.transcriptsToRestore[1],
+            parentFeatureId: undoMergeTranscriptsChange.parentFeatureId,
+        }));
+        return new MergeTranscriptsChange_1.MergeTranscriptsChange({
+            changedIds: inverseChangedIds,
+            typeName: 'MergeTranscriptsChange',
+            changes: inverseChanges,
+            assembly,
+        }, { logger });
+    }
+}
+exports.UndoMergeTranscriptsChange = UndoMergeTranscriptsChange;
+//# sourceMappingURL=UndoMergeTranscriptsChange.js.map

package/dist/Changes/UndoMergeTranscriptsChange.js.map

@@ -0,0 +1 @@
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package/dist/Changes/UndoSplitExonChange.d.ts

@@ -0,0 +1,32 @@
+import { type ChangeOptions, type ClientDataStore, FeatureChange, type LocalGFF3DataStore, type SerializedFeatureChange, type ServerDataStore } from '@apollo-annotation/common';
+import { type AnnotationFeatureSnapshot } from '@apollo-annotation/mst';
+import { SplitExonChange } from './SplitExonChange';
+interface SerializedUndoSplitExonChangeBase extends SerializedFeatureChange {
+    typeName: 'UndoSplitExonChange';
+}
+export interface UndoSplitExonChangeDetails {
+    exonToRestore: AnnotationFeatureSnapshot;
+    parentFeatureId: string;
+    idsToDelete: string[];
+    upstreamCut: number;
+    downstreamCut: number;
+    leftExonId: string;
+    rightExonId: string;
+}
+interface SerializedUndoSplitExonChangeSingle extends SerializedUndoSplitExonChangeBase, UndoSplitExonChangeDetails {
+}
+interface SerializedUndoSplitExonChangeMultiple extends SerializedUndoSplitExonChangeBase {
+    changes: UndoSplitExonChangeDetails[];
+}
+export type SerializedUndoSplitExonChange = SerializedUndoSplitExonChangeSingle | SerializedUndoSplitExonChangeMultiple;
+export declare class UndoSplitExonChange extends FeatureChange {
+    typeName: "UndoSplitExonChange";
+    changes: UndoSplitExonChangeDetails[];
+    constructor(json: SerializedUndoSplitExonChange, options?: ChangeOptions);
+    toJSON(): SerializedUndoSplitExonChange;
+    executeOnServer(backend: ServerDataStore): Promise<void>;
+    executeOnLocalGFF3(_backend: LocalGFF3DataStore): Promise<void>;
+    executeOnClient(dataStore: ClientDataStore): Promise<void>;
+    getInverse(): SplitExonChange;
+}
+export {};

package/dist/Changes/UndoSplitExonChange.js

@@ -0,0 +1,111 @@
+"use strict";
+/* eslint-disable @typescript-eslint/require-await */
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.UndoSplitExonChange = void 0;
+const common_1 = require("@apollo-annotation/common");
+const DeleteFeatureChange_1 = require("./DeleteFeatureChange");
+const SplitExonChange_1 = require("./SplitExonChange");
+class UndoSplitExonChange extends common_1.FeatureChange {
+    typeName = 'UndoSplitExonChange';
+    changes;
+    constructor(json, options) {
+        super(json, options);
+        this.changes = 'changes' in json ? json.changes : [json];
+    }
+    toJSON() {
+        const { assembly, changedIds, changes, typeName } = this;
+        if (changes.length === 1) {
+            const [{ exonToRestore, parentFeatureId, idsToDelete, upstreamCut, downstreamCut, leftExonId, rightExonId, },] = changes;
+            return {
+                typeName,
+                changedIds,
+                assembly,
+                exonToRestore,
+                parentFeatureId,
+                idsToDelete,
+                upstreamCut,
+                downstreamCut,
+                leftExonId,
+                rightExonId,
+            };
+        }
+        return { typeName, changedIds, assembly, changes };
+    }
+    async executeOnServer(backend) {
+        const { featureModel, session } = backend;
+        const { changes } = this;
+        for (const change of changes) {
+            const { exonToRestore, parentFeatureId, idsToDelete } = change;
+            const topLevelFeature = await featureModel
+                .findOne({ allIds: parentFeatureId })
+                .session(session)
+                .exec();
+            if (!topLevelFeature) {
+                throw new Error(`Could not find feature with ID "${parentFeatureId}"`);
+            }
+            const parentFeature = this.getFeatureFromId(topLevelFeature, parentFeatureId);
+            if (!parentFeature) {
+                throw new Error(`Could not find feature with ID "${parentFeatureId}" in feature "${topLevelFeature._id.toString()}"`);
+            }
+            if (!parentFeature.children) {
+                parentFeature.children = new Map();
+            }
+            this.addChild(parentFeature, exonToRestore);
+            const childIds = this.getChildFeatureIds(exonToRestore);
+            topLevelFeature.allIds.push(exonToRestore._id, ...childIds);
+            topLevelFeature.allIds = topLevelFeature.allIds.filter((id) => !idsToDelete.includes(id));
+            idsToDelete.map((id) => (0, DeleteFeatureChange_1.findAndDeleteChildFeature)(topLevelFeature, id, this));
+            await topLevelFeature.save();
+        }
+    }
+    async executeOnLocalGFF3(_backend) {
+        throw new Error('executeOnLocalGFF3 not implemented');
+    }
+    async executeOnClient(dataStore) {
+        // eslint-disable-next-line @typescript-eslint/no-unnecessary-condition
+        if (!dataStore) {
+            throw new Error('No data store');
+        }
+        const { changes } = this;
+        for (const change of changes) {
+            const { exonToRestore, parentFeatureId, idsToDelete } = change;
+            if (!parentFeatureId) {
+                throw new Error('Parent ID is missing');
+            }
+            const parentFeature = dataStore.getFeature(parentFeatureId);
+            if (!parentFeature) {
+                throw new Error(`Could not find parent feature "${parentFeatureId}"`);
+            }
+            // create an ID for the parent feature if it does not have one
+            if (!parentFeature.attributes.get('_id')) {
+                parentFeature.setAttribute('_id', [parentFeature._id]);
+            }
+            parentFeature.addChild(exonToRestore);
+            idsToDelete.map((id) => {
+                parentFeature.deleteChild(id);
+            });
+        }
+    }
+    getInverse() {
+        const { assembly, changedIds, changes, logger } = this;
+        const inverseChangedIds = [...changedIds].reverse();
+        const inverseChanges = [...changes]
+            .reverse()
+            .map((undoSplitExonChange) => ({
+            parentFeatureId: undoSplitExonChange.parentFeatureId,
+            exonToBeSplit: undoSplitExonChange.exonToRestore,
+            upstreamCut: undoSplitExonChange.upstreamCut,
+            downstreamCut: undoSplitExonChange.downstreamCut,
+            leftExonId: undoSplitExonChange.leftExonId,
+            rightExonId: undoSplitExonChange.rightExonId,
+        }));
+        return new SplitExonChange_1.SplitExonChange({
+            changedIds: inverseChangedIds,
+            typeName: 'SplitExonChange',
+            changes: inverseChanges,
+            assembly,
+        }, { logger });
+    }
+}
+exports.UndoSplitExonChange = UndoSplitExonChange;
+//# sourceMappingURL=UndoSplitExonChange.js.map

package/dist/Changes/UndoSplitExonChange.js.map

@@ -0,0 +1 @@
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