@apollo-annotation/shared 0.3.5 → 0.3.7

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Files changed (127) hide show
  1. package/dist/Changes/AddAssemblyAliasesChange.d.ts +16 -0
  2. package/dist/Changes/AddAssemblyAliasesChange.js +50 -0
  3. package/dist/Changes/AddAssemblyAliasesChange.js.map +1 -0
  4. package/dist/Changes/AddAssemblyAndFeaturesFromFileChange.d.ts +1 -1
  5. package/dist/Changes/AddAssemblyFromExternalChange.d.ts +1 -1
  6. package/dist/Changes/AddAssemblyFromFileChange.d.ts +1 -1
  7. package/dist/Changes/AddFeatureChange.d.ts +3 -2
  8. package/dist/Changes/AddFeatureChange.js +5 -25
  9. package/dist/Changes/AddFeatureChange.js.map +1 -1
  10. package/dist/Changes/AddFeaturesFromFileChange.d.ts +1 -1
  11. package/dist/Changes/AddRefSeqAliasesChange.d.ts +1 -1
  12. package/dist/Changes/DeleteAssemblyChange.d.ts +1 -1
  13. package/dist/Changes/DeleteFeatureChange.d.ts +12 -11
  14. package/dist/Changes/DeleteFeatureChange.js +37 -32
  15. package/dist/Changes/DeleteFeatureChange.js.map +1 -1
  16. package/dist/Changes/DeleteUserChange.d.ts +1 -1
  17. package/dist/Changes/FeatureAttributeChange.d.ts +3 -2
  18. package/dist/Changes/FeatureAttributeChange.js +14 -6
  19. package/dist/Changes/FeatureAttributeChange.js.map +1 -1
  20. package/dist/Changes/FromFileBaseChange.d.ts +3 -3
  21. package/dist/Changes/FromFileBaseChange.js.map +1 -1
  22. package/dist/Changes/ImportJBrowseConfigChange.d.ts +4 -1
  23. package/dist/Changes/ImportJBrowseConfigChange.js +17 -13
  24. package/dist/Changes/ImportJBrowseConfigChange.js.map +1 -1
  25. package/dist/Changes/LocationEndChange.d.ts +1 -1
  26. package/dist/Changes/LocationEndChange.js +40 -37
  27. package/dist/Changes/LocationEndChange.js.map +1 -1
  28. package/dist/Changes/LocationStartChange.d.ts +1 -1
  29. package/dist/Changes/LocationStartChange.js +40 -37
  30. package/dist/Changes/LocationStartChange.js.map +1 -1
  31. package/dist/Changes/MergeExonsChange.d.ts +30 -0
  32. package/dist/Changes/MergeExonsChange.js +130 -0
  33. package/dist/Changes/MergeExonsChange.js.map +1 -0
  34. package/dist/Changes/MergeTranscriptsChange.d.ts +36 -0
  35. package/dist/Changes/MergeTranscriptsChange.js +246 -0
  36. package/dist/Changes/MergeTranscriptsChange.js.map +1 -0
  37. package/dist/Changes/SplitExonChange.d.ts +33 -0
  38. package/dist/Changes/SplitExonChange.js +142 -0
  39. package/dist/Changes/SplitExonChange.js.map +1 -0
  40. package/dist/Changes/StrandChange.d.ts +1 -1
  41. package/dist/Changes/TypeChange.d.ts +1 -1
  42. package/dist/Changes/UndoMergeExonsChange.d.ts +27 -0
  43. package/dist/Changes/UndoMergeExonsChange.js +104 -0
  44. package/dist/Changes/UndoMergeExonsChange.js.map +1 -0
  45. package/dist/Changes/UndoMergeTranscriptsChange.d.ts +27 -0
  46. package/dist/Changes/UndoMergeTranscriptsChange.js +104 -0
  47. package/dist/Changes/UndoMergeTranscriptsChange.js.map +1 -0
  48. package/dist/Changes/UndoSplitExonChange.d.ts +32 -0
  49. package/dist/Changes/UndoSplitExonChange.js +111 -0
  50. package/dist/Changes/UndoSplitExonChange.js.map +1 -0
  51. package/dist/Changes/UserChange.d.ts +1 -1
  52. package/dist/Changes/index.d.ts +21 -0
  53. package/dist/Changes/index.js +21 -0
  54. package/dist/Changes/index.js.map +1 -1
  55. package/dist/Checks/CDSCheck.d.ts +1 -1
  56. package/dist/GFF3/annotationFeatureToGFF3.d.ts +2 -2
  57. package/dist/GFF3/annotationFeatureToGFF3.js +7 -1
  58. package/dist/GFF3/annotationFeatureToGFF3.js.map +1 -1
  59. package/dist/GFF3/annotationFeatureToGFF3.test.js +1 -1
  60. package/dist/GFF3/annotationFeatureToGFF3.test.js.map +1 -1
  61. package/dist/GFF3/gff3ToAnnotationFeature.d.ts +2 -2
  62. package/dist/GFF3/gff3ToAnnotationFeature.test.d.ts +1 -1
  63. package/dist/GFF3/gff3ToAnnotationFeature.test.js +1 -1
  64. package/dist/GFF3/gff3ToAnnotationFeature.test.js.map +1 -1
  65. package/dist/GFF3/gffReservedKeys.d.ts +7 -0
  66. package/dist/GFF3/gffReservedKeys.js +21 -1
  67. package/dist/GFF3/gffReservedKeys.js.map +1 -1
  68. package/dist/Messages.d.ts +2 -2
  69. package/dist/Operations/GetAssembliesOperation.d.ts +1 -1
  70. package/dist/Operations/GetFeaturesOperation.d.ts +1 -1
  71. package/dist/Validations/CoreValidation.d.ts +2 -2
  72. package/dist/Validations/CoreValidation.js +1 -1
  73. package/dist/Validations/CoreValidation.js.map +1 -1
  74. package/dist/Validations/ParentChildValidation.d.ts +5 -5
  75. package/dist/Validations/ParentChildValidation.js +3 -1
  76. package/dist/Validations/ParentChildValidation.js.map +1 -1
  77. package/dist/Validations/Validation.d.ts +5 -5
  78. package/dist/Validations/ValidationSet.d.ts +4 -4
  79. package/dist/Validations/ValidationSet.js.map +1 -1
  80. package/dist/tsconfig.tsbuildinfo +1 -1
  81. package/dist/util.d.ts +2 -0
  82. package/dist/util.js +13 -0
  83. package/dist/util.js.map +1 -1
  84. package/package.json +4 -4
  85. package/src/Changes/AddAssemblyAliasesChange.ts +69 -0
  86. package/src/Changes/AddAssemblyAndFeaturesFromFileChange.ts +6 -6
  87. package/src/Changes/AddAssemblyFromExternalChange.ts +5 -5
  88. package/src/Changes/AddAssemblyFromFileChange.ts +5 -5
  89. package/src/Changes/AddFeatureChange.ts +11 -35
  90. package/src/Changes/AddFeaturesFromFileChange.ts +6 -6
  91. package/src/Changes/AddRefSeqAliasesChange.ts +6 -6
  92. package/src/Changes/DeleteAssemblyChange.ts +4 -4
  93. package/src/Changes/DeleteFeatureChange.ts +49 -43
  94. package/src/Changes/DeleteUserChange.ts +5 -5
  95. package/src/Changes/FeatureAttributeChange.ts +22 -13
  96. package/src/Changes/FromFileBaseChange.ts +6 -3
  97. package/src/Changes/ImportJBrowseConfigChange.ts +37 -22
  98. package/src/Changes/LocationEndChange.ts +47 -56
  99. package/src/Changes/LocationStartChange.ts +47 -56
  100. package/src/Changes/MergeExonsChange.ts +185 -0
  101. package/src/Changes/MergeTranscriptsChange.ts +379 -0
  102. package/src/Changes/SplitExonChange.ts +249 -0
  103. package/src/Changes/StrandChange.ts +6 -6
  104. package/src/Changes/TypeChange.ts +6 -6
  105. package/src/Changes/UndoMergeExonsChange.ts +149 -0
  106. package/src/Changes/UndoMergeTranscriptsChange.ts +153 -0
  107. package/src/Changes/UndoSplitExonChange.ts +174 -0
  108. package/src/Changes/UserChange.ts +5 -5
  109. package/src/Changes/index.ts +21 -0
  110. package/src/Checks/CDSCheck.ts +2 -2
  111. package/src/GFF3/annotationFeatureToGFF3.test.ts +4 -2
  112. package/src/GFF3/annotationFeatureToGFF3.ts +11 -5
  113. package/src/GFF3/gff3ToAnnotationFeature.test.ts +3 -3
  114. package/src/GFF3/gff3ToAnnotationFeature.ts +2 -2
  115. package/src/GFF3/gffReservedKeys.ts +25 -0
  116. package/src/Messages.ts +2 -2
  117. package/src/Operations/GetAssembliesOperation.ts +3 -3
  118. package/src/Operations/GetFeaturesOperation.ts +4 -4
  119. package/src/Validations/CoreValidation.ts +4 -3
  120. package/src/Validations/ParentChildValidation.ts +10 -8
  121. package/src/Validations/Validation.ts +5 -5
  122. package/src/Validations/ValidationSet.ts +8 -4
  123. package/src/util.ts +16 -0
  124. package/test_data/example01.json +3 -3
  125. package/test_data/example02.json +3 -3
  126. package/test_data/example04.json +3 -3
  127. package/test_data/gene_representations.gff3 +686 -1686

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