@apollo-annotation/shared 0.3.5 → 0.3.6

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Files changed (76) hide show
  1. package/dist/Changes/AddAssemblyAndFeaturesFromFileChange.d.ts +1 -1
  2. package/dist/Changes/AddAssemblyFromExternalChange.d.ts +1 -1
  3. package/dist/Changes/AddAssemblyFromFileChange.d.ts +1 -1
  4. package/dist/Changes/AddFeatureChange.d.ts +2 -2
  5. package/dist/Changes/AddFeaturesFromFileChange.d.ts +1 -1
  6. package/dist/Changes/AddRefSeqAliasesChange.d.ts +1 -1
  7. package/dist/Changes/DeleteAssemblyChange.d.ts +1 -1
  8. package/dist/Changes/DeleteFeatureChange.d.ts +3 -3
  9. package/dist/Changes/DeleteUserChange.d.ts +1 -1
  10. package/dist/Changes/FeatureAttributeChange.d.ts +1 -1
  11. package/dist/Changes/FromFileBaseChange.d.ts +3 -3
  12. package/dist/Changes/FromFileBaseChange.js.map +1 -1
  13. package/dist/Changes/ImportJBrowseConfigChange.d.ts +1 -1
  14. package/dist/Changes/LocationEndChange.d.ts +1 -1
  15. package/dist/Changes/LocationStartChange.d.ts +1 -1
  16. package/dist/Changes/StrandChange.d.ts +1 -1
  17. package/dist/Changes/TypeChange.d.ts +1 -1
  18. package/dist/Changes/UserChange.d.ts +1 -1
  19. package/dist/Checks/CDSCheck.d.ts +1 -1
  20. package/dist/GFF3/annotationFeatureToGFF3.d.ts +2 -2
  21. package/dist/GFF3/annotationFeatureToGFF3.test.js +1 -1
  22. package/dist/GFF3/annotationFeatureToGFF3.test.js.map +1 -1
  23. package/dist/GFF3/gff3ToAnnotationFeature.d.ts +2 -2
  24. package/dist/GFF3/gff3ToAnnotationFeature.test.d.ts +1 -1
  25. package/dist/GFF3/gff3ToAnnotationFeature.test.js +1 -1
  26. package/dist/GFF3/gff3ToAnnotationFeature.test.js.map +1 -1
  27. package/dist/GFF3/gffReservedKeys.d.ts +7 -0
  28. package/dist/GFF3/gffReservedKeys.js +21 -1
  29. package/dist/GFF3/gffReservedKeys.js.map +1 -1
  30. package/dist/Messages.d.ts +2 -2
  31. package/dist/Operations/GetAssembliesOperation.d.ts +1 -1
  32. package/dist/Operations/GetFeaturesOperation.d.ts +1 -1
  33. package/dist/Validations/CoreValidation.d.ts +2 -2
  34. package/dist/Validations/CoreValidation.js +1 -1
  35. package/dist/Validations/CoreValidation.js.map +1 -1
  36. package/dist/Validations/ParentChildValidation.d.ts +5 -5
  37. package/dist/Validations/ParentChildValidation.js.map +1 -1
  38. package/dist/Validations/Validation.d.ts +5 -5
  39. package/dist/Validations/ValidationSet.d.ts +4 -4
  40. package/dist/Validations/ValidationSet.js.map +1 -1
  41. package/dist/tsconfig.tsbuildinfo +1 -1
  42. package/package.json +4 -4
  43. package/src/Changes/AddAssemblyAndFeaturesFromFileChange.ts +6 -6
  44. package/src/Changes/AddAssemblyFromExternalChange.ts +5 -5
  45. package/src/Changes/AddAssemblyFromFileChange.ts +5 -5
  46. package/src/Changes/AddFeatureChange.ts +6 -6
  47. package/src/Changes/AddFeaturesFromFileChange.ts +6 -6
  48. package/src/Changes/AddRefSeqAliasesChange.ts +6 -6
  49. package/src/Changes/DeleteAssemblyChange.ts +4 -4
  50. package/src/Changes/DeleteFeatureChange.ts +7 -7
  51. package/src/Changes/DeleteUserChange.ts +5 -5
  52. package/src/Changes/FeatureAttributeChange.ts +6 -6
  53. package/src/Changes/FromFileBaseChange.ts +6 -3
  54. package/src/Changes/ImportJBrowseConfigChange.ts +4 -4
  55. package/src/Changes/LocationEndChange.ts +6 -6
  56. package/src/Changes/LocationStartChange.ts +6 -6
  57. package/src/Changes/StrandChange.ts +6 -6
  58. package/src/Changes/TypeChange.ts +6 -6
  59. package/src/Changes/UserChange.ts +5 -5
  60. package/src/Checks/CDSCheck.ts +2 -2
  61. package/src/GFF3/annotationFeatureToGFF3.test.ts +4 -2
  62. package/src/GFF3/annotationFeatureToGFF3.ts +4 -4
  63. package/src/GFF3/gff3ToAnnotationFeature.test.ts +3 -3
  64. package/src/GFF3/gff3ToAnnotationFeature.ts +2 -2
  65. package/src/GFF3/gffReservedKeys.ts +25 -0
  66. package/src/Messages.ts +2 -2
  67. package/src/Operations/GetAssembliesOperation.ts +3 -3
  68. package/src/Operations/GetFeaturesOperation.ts +4 -4
  69. package/src/Validations/CoreValidation.ts +4 -3
  70. package/src/Validations/ParentChildValidation.ts +7 -6
  71. package/src/Validations/Validation.ts +5 -5
  72. package/src/Validations/ValidationSet.ts +8 -4
  73. package/test_data/example01.json +3 -3
  74. package/test_data/example02.json +3 -3
  75. package/test_data/example04.json +3 -3
  76. package/test_data/gene_representations.gff3 +686 -1686
package/test_data/example04.json CHANGED
@@ -19,7 +19,7 @@
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  "refSeq": "chr1",
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  "type": "exon",
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  "min": 31049,
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- "max": 31500,
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+ "max": 31499,
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  "strand": 1,
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  "attributes": {
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  "gff_id": ["exon40001"]
@@ -89,7 +89,7 @@
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  "refSeq": "chr1",
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  "type": "exon",
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  "min": 31049,
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- "max": 31500,
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+ "max": 31499,
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  "strand": 1,
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  "attributes": {
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  "gff_id": ["exon40001"]
@@ -148,7 +148,7 @@
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  "refSeq": "chr1",
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  "type": "exon",
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  "min": 31299,
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- "max": 31500,
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+ "max": 31499,
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  "strand": 1,
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  "attributes": {
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  "gff_id": ["exon40002"]