@apollo-annotation/shared 0.3.11 → 0.3.13
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/Changes/AddAssemblyAliasesChange.d.ts +1 -0
- package/dist/Changes/AddAssemblyAliasesChange.d.ts.map +1 -0
- package/dist/Changes/AddAssemblyAliasesChange.js +7 -9
- package/dist/Changes/AddAssemblyAliasesChange.js.map +1 -1
- package/dist/Changes/AddAssemblyAndFeaturesFromFileChange.d.ts +5 -3
- package/dist/Changes/AddAssemblyAndFeaturesFromFileChange.d.ts.map +1 -0
- package/dist/Changes/AddAssemblyAndFeaturesFromFileChange.js +31 -13
- package/dist/Changes/AddAssemblyAndFeaturesFromFileChange.js.map +1 -1
- package/dist/Changes/AddAssemblyFromExternalChange.d.ts +1 -0
- package/dist/Changes/AddAssemblyFromExternalChange.d.ts.map +1 -0
- package/dist/Changes/AddAssemblyFromExternalChange.js +13 -16
- package/dist/Changes/AddAssemblyFromExternalChange.js.map +1 -1
- package/dist/Changes/AddAssemblyFromFileChange.d.ts +3 -2
- package/dist/Changes/AddAssemblyFromFileChange.d.ts.map +1 -0
- package/dist/Changes/AddAssemblyFromFileChange.js +4 -8
- package/dist/Changes/AddAssemblyFromFileChange.js.map +1 -1
- package/dist/Changes/AddFeatureChange.d.ts +3 -2
- package/dist/Changes/AddFeatureChange.d.ts.map +1 -0
- package/dist/Changes/AddFeatureChange.js +6 -10
- package/dist/Changes/AddFeatureChange.js.map +1 -1
- package/dist/Changes/AddFeaturesFromFileChange.d.ts +5 -3
- package/dist/Changes/AddFeaturesFromFileChange.d.ts.map +1 -0
- package/dist/Changes/AddFeaturesFromFileChange.js +27 -14
- package/dist/Changes/AddFeaturesFromFileChange.js.map +1 -1
- package/dist/Changes/AddRefSeqAliasesChange.d.ts +1 -0
- package/dist/Changes/AddRefSeqAliasesChange.d.ts.map +1 -0
- package/dist/Changes/AddRefSeqAliasesChange.js +7 -8
- package/dist/Changes/AddRefSeqAliasesChange.js.map +1 -1
- package/dist/Changes/DeleteAssemblyChange.d.ts +1 -0
- package/dist/Changes/DeleteAssemblyChange.d.ts.map +1 -0
- package/dist/Changes/DeleteAssemblyChange.js +5 -8
- package/dist/Changes/DeleteAssemblyChange.js.map +1 -1
- package/dist/Changes/DeleteFeatureChange.d.ts +4 -3
- package/dist/Changes/DeleteFeatureChange.d.ts.map +1 -0
- package/dist/Changes/DeleteFeatureChange.js +6 -12
- package/dist/Changes/DeleteFeatureChange.js.map +1 -1
- package/dist/Changes/DeleteUserChange.d.ts +1 -0
- package/dist/Changes/DeleteUserChange.d.ts.map +1 -0
- package/dist/Changes/DeleteUserChange.js +2 -6
- package/dist/Changes/DeleteUserChange.js.map +1 -1
- package/dist/Changes/FeatureAttributeChange.d.ts +1 -0
- package/dist/Changes/FeatureAttributeChange.d.ts.map +1 -0
- package/dist/Changes/FeatureAttributeChange.js +3 -8
- package/dist/Changes/FeatureAttributeChange.js.map +1 -1
- package/dist/Changes/FromFileBaseChange.d.ts +4 -3
- package/dist/Changes/FromFileBaseChange.d.ts.map +1 -0
- package/dist/Changes/FromFileBaseChange.js +4 -10
- package/dist/Changes/FromFileBaseChange.js.map +1 -1
- package/dist/Changes/ImportJBrowseConfigChange.d.ts +1 -0
- package/dist/Changes/ImportJBrowseConfigChange.d.ts.map +1 -0
- package/dist/Changes/ImportJBrowseConfigChange.js +3 -8
- package/dist/Changes/ImportJBrowseConfigChange.js.map +1 -1
- package/dist/Changes/LocationEndChange.d.ts +1 -0
- package/dist/Changes/LocationEndChange.d.ts.map +1 -0
- package/dist/Changes/LocationEndChange.js +3 -8
- package/dist/Changes/LocationEndChange.js.map +1 -1
- package/dist/Changes/LocationStartChange.d.ts +1 -0
- package/dist/Changes/LocationStartChange.d.ts.map +1 -0
- package/dist/Changes/LocationStartChange.js +3 -8
- package/dist/Changes/LocationStartChange.js.map +1 -1
- package/dist/Changes/MergeExonsChange.d.ts +3 -2
- package/dist/Changes/MergeExonsChange.d.ts.map +1 -0
- package/dist/Changes/MergeExonsChange.js +9 -13
- package/dist/Changes/MergeExonsChange.js.map +1 -1
- package/dist/Changes/MergeTranscriptsChange.d.ts +4 -3
- package/dist/Changes/MergeTranscriptsChange.d.ts.map +1 -0
- package/dist/Changes/MergeTranscriptsChange.js +20 -24
- package/dist/Changes/MergeTranscriptsChange.js.map +1 -1
- package/dist/Changes/SplitExonChange.d.ts +3 -2
- package/dist/Changes/SplitExonChange.d.ts.map +1 -0
- package/dist/Changes/SplitExonChange.js +6 -10
- package/dist/Changes/SplitExonChange.js.map +1 -1
- package/dist/Changes/StrandChange.d.ts +1 -0
- package/dist/Changes/StrandChange.d.ts.map +1 -0
- package/dist/Changes/StrandChange.js +2 -6
- package/dist/Changes/StrandChange.js.map +1 -1
- package/dist/Changes/TypeChange.d.ts +1 -0
- package/dist/Changes/TypeChange.d.ts.map +1 -0
- package/dist/Changes/TypeChange.js +2 -6
- package/dist/Changes/TypeChange.js.map +1 -1
- package/dist/Changes/UndoMergeExonsChange.d.ts +3 -2
- package/dist/Changes/UndoMergeExonsChange.d.ts.map +1 -0
- package/dist/Changes/UndoMergeExonsChange.js +4 -8
- package/dist/Changes/UndoMergeExonsChange.js.map +1 -1
- package/dist/Changes/UndoMergeTranscriptsChange.d.ts +3 -2
- package/dist/Changes/UndoMergeTranscriptsChange.d.ts.map +1 -0
- package/dist/Changes/UndoMergeTranscriptsChange.js +4 -8
- package/dist/Changes/UndoMergeTranscriptsChange.js.map +1 -1
- package/dist/Changes/UndoSplitExonChange.d.ts +3 -2
- package/dist/Changes/UndoSplitExonChange.d.ts.map +1 -0
- package/dist/Changes/UndoSplitExonChange.js +6 -10
- package/dist/Changes/UndoSplitExonChange.js.map +1 -1
- package/dist/Changes/UserChange.d.ts +1 -0
- package/dist/Changes/UserChange.d.ts.map +1 -0
- package/dist/Changes/UserChange.js +2 -6
- package/dist/Changes/UserChange.js.map +1 -1
- package/dist/Changes/index.d.ts +47 -46
- package/dist/Changes/index.d.ts.map +1 -0
- package/dist/Changes/index.js +70 -74
- package/dist/Changes/index.js.map +1 -1
- package/dist/Checks/CDSCheck.d.ts +2 -1
- package/dist/Checks/CDSCheck.d.ts.map +1 -0
- package/dist/Checks/CDSCheck.js +17 -26
- package/dist/Checks/CDSCheck.js.map +1 -1
- package/dist/Checks/TranscriptCheck.d.ts +2 -1
- package/dist/Checks/TranscriptCheck.d.ts.map +1 -0
- package/dist/Checks/TranscriptCheck.js +11 -16
- package/dist/Checks/TranscriptCheck.js.map +1 -1
- package/dist/Checks/index.d.ts +3 -2
- package/dist/Checks/index.d.ts.map +1 -0
- package/dist/Checks/index.js +2 -5
- package/dist/Checks/index.js.map +1 -1
- package/dist/Checks/util.d.ts +2 -1
- package/dist/Checks/util.d.ts.map +1 -0
- package/dist/Checks/util.js +1 -4
- package/dist/Checks/util.js.map +1 -1
- package/dist/Common/index.d.ts +2 -1
- package/dist/Common/index.d.ts.map +1 -0
- package/dist/Common/index.js +1 -4
- package/dist/Common/index.js.map +1 -1
- package/dist/Common/jwtPayload.d.ts +1 -0
- package/dist/Common/jwtPayload.d.ts.map +1 -0
- package/dist/Common/jwtPayload.js +5 -10
- package/dist/Common/jwtPayload.js.map +1 -1
- package/dist/GFF3/annotationFeatureToGFF3.d.ts +3 -2
- package/dist/GFF3/annotationFeatureToGFF3.d.ts.map +1 -0
- package/dist/GFF3/annotationFeatureToGFF3.js +96 -93
- package/dist/GFF3/annotationFeatureToGFF3.js.map +1 -1
- package/dist/GFF3/annotationFeatureToGFF3.test.d.ts +1 -0
- package/dist/GFF3/annotationFeatureToGFF3.test.d.ts.map +1 -0
- package/dist/GFF3/annotationFeatureToGFF3.test.js +77 -79
- package/dist/GFF3/annotationFeatureToGFF3.test.js.map +1 -1
- package/dist/GFF3/gff3ToAnnotationFeature.d.ts +3 -2
- package/dist/GFF3/gff3ToAnnotationFeature.d.ts.map +1 -0
- package/dist/GFF3/gff3ToAnnotationFeature.js +30 -22
- package/dist/GFF3/gff3ToAnnotationFeature.js.map +1 -1
- package/dist/GFF3/gff3ToAnnotationFeature.test.d.ts +1 -0
- package/dist/GFF3/gff3ToAnnotationFeature.test.d.ts.map +1 -0
- package/dist/GFF3/gff3ToAnnotationFeature.test.js +60 -63
- package/dist/GFF3/gff3ToAnnotationFeature.test.js.map +1 -1
- package/dist/GFF3/gffReservedKeys.d.ts +1 -0
- package/dist/GFF3/gffReservedKeys.d.ts.map +1 -0
- package/dist/GFF3/gffReservedKeys.js +12 -19
- package/dist/GFF3/gffReservedKeys.js.map +1 -1
- package/dist/GFF3/index.d.ts +4 -3
- package/dist/GFF3/index.d.ts.map +1 -0
- package/dist/GFF3/index.js +3 -6
- package/dist/GFF3/index.js.map +1 -1
- package/dist/GFF3/testUtil.d.ts +2 -1
- package/dist/GFF3/testUtil.d.ts.map +1 -0
- package/dist/GFF3/testUtil.js +8 -8
- package/dist/GFF3/testUtil.js.map +1 -1
- package/dist/Messages.d.ts +3 -2
- package/dist/Messages.d.ts.map +1 -0
- package/dist/Messages.js +1 -2
- package/dist/Operations/GetAssembliesOperation.d.ts +2 -3
- package/dist/Operations/GetAssembliesOperation.d.ts.map +1 -0
- package/dist/Operations/GetAssembliesOperation.js +2 -6
- package/dist/Operations/GetAssembliesOperation.js.map +1 -1
- package/dist/Operations/GetFeaturesOperation.d.ts +1 -0
- package/dist/Operations/GetFeaturesOperation.d.ts.map +1 -0
- package/dist/Operations/GetFeaturesOperation.js +2 -6
- package/dist/Operations/GetFeaturesOperation.js.map +1 -1
- package/dist/Operations/index.d.ts +5 -4
- package/dist/Operations/index.d.ts.map +1 -0
- package/dist/Operations/index.js +5 -9
- package/dist/Operations/index.js.map +1 -1
- package/dist/Validations/CoreValidation.d.ts +4 -3
- package/dist/Validations/CoreValidation.d.ts.map +1 -0
- package/dist/Validations/CoreValidation.js +6 -12
- package/dist/Validations/CoreValidation.js.map +1 -1
- package/dist/Validations/ParentChildValidation.d.ts +6 -5
- package/dist/Validations/ParentChildValidation.d.ts.map +1 -0
- package/dist/Validations/ParentChildValidation.js +6 -10
- package/dist/Validations/ParentChildValidation.js.map +1 -1
- package/dist/Validations/Validation.d.ts +6 -5
- package/dist/Validations/Validation.d.ts.map +1 -0
- package/dist/Validations/Validation.js +2 -7
- package/dist/Validations/Validation.js.map +1 -1
- package/dist/Validations/ValidationSet.d.ts +5 -4
- package/dist/Validations/ValidationSet.d.ts.map +1 -0
- package/dist/Validations/ValidationSet.js +3 -8
- package/dist/Validations/ValidationSet.js.map +1 -1
- package/dist/Validations/index.d.ts +5 -4
- package/dist/Validations/index.d.ts.map +1 -0
- package/dist/Validations/index.js +4 -7
- package/dist/Validations/index.js.map +1 -1
- package/dist/Validations/soSequenceTypes.d.ts +1 -0
- package/dist/Validations/soSequenceTypes.d.ts.map +1 -0
- package/dist/Validations/soSequenceTypes.js +1 -3
- package/dist/Validations/soSequenceTypes.js.map +1 -1
- package/dist/index.d.ts +9 -8
- package/dist/index.d.ts.map +1 -0
- package/dist/index.js +8 -11
- package/dist/index.js.map +1 -1
- package/dist/tsconfig.tsbuildinfo +1 -1
- package/dist/util.d.ts +3 -2
- package/dist/util.d.ts.map +1 -0
- package/dist/util.js +4 -10
- package/dist/util.js.map +1 -1
- package/package.json +16 -13
- package/src/Changes/AddAssemblyAliasesChange.ts +3 -1
- package/src/Changes/AddAssemblyAndFeaturesFromFileChange.ts +38 -16
- package/src/Changes/AddAssemblyFromExternalChange.ts +3 -2
- package/src/Changes/AddAssemblyFromFileChange.ts +11 -8
- package/src/Changes/AddFeatureChange.ts +3 -2
- package/src/Changes/AddFeaturesFromFileChange.ts +35 -18
- package/src/Changes/AddRefSeqAliasesChange.ts +3 -0
- package/src/Changes/DeleteAssemblyChange.ts +1 -0
- package/src/Changes/DeleteFeatureChange.ts +3 -3
- package/src/Changes/FeatureAttributeChange.ts +1 -1
- package/src/Changes/FromFileBaseChange.ts +4 -9
- package/src/Changes/LocationEndChange.ts +1 -1
- package/src/Changes/LocationStartChange.ts +1 -1
- package/src/Changes/MergeExonsChange.ts +4 -4
- package/src/Changes/MergeTranscriptsChange.ts +8 -8
- package/src/Changes/SplitExonChange.ts +3 -3
- package/src/Changes/StrandChange.ts +1 -1
- package/src/Changes/TypeChange.ts +1 -1
- package/src/Changes/UndoMergeExonsChange.ts +2 -2
- package/src/Changes/UndoMergeTranscriptsChange.ts +2 -2
- package/src/Changes/UndoSplitExonChange.ts +3 -3
- package/src/Changes/index.ts +46 -46
- package/src/Checks/CDSCheck.ts +8 -10
- package/src/Checks/TranscriptCheck.ts +4 -4
- package/src/Checks/index.ts +2 -2
- package/src/Checks/util.ts +1 -1
- package/src/Common/index.ts +1 -1
- package/src/GFF3/annotationFeatureToGFF3.test.ts +3 -3
- package/src/GFF3/annotationFeatureToGFF3.ts +105 -99
- package/src/GFF3/gff3ToAnnotationFeature.test.ts +3 -3
- package/src/GFF3/gff3ToAnnotationFeature.ts +29 -13
- package/src/GFF3/index.ts +3 -3
- package/src/GFF3/testUtil.ts +5 -1
- package/src/Messages.ts +2 -2
- package/src/Operations/index.ts +4 -4
- package/src/Validations/CoreValidation.ts +4 -4
- package/src/Validations/ParentChildValidation.ts +6 -6
- package/src/Validations/Validation.ts +5 -5
- package/src/Validations/ValidationSet.ts +4 -8
- package/src/Validations/index.ts +4 -4
- package/src/declare.d.ts +58 -0
- package/src/index.ts +8 -8
- package/src/util.ts +3 -3
- package/test_data/single_feature_mutliple_locations.gff3 +5 -0
- package/test_data/single_feature_mutliple_locations.json +76 -0
- package/tsconfig.json +6 -4
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{"version":3,"file":"MergeExonsChange.js","sourceRoot":"","sources":["../../src/Changes/MergeExonsChange.ts"],"names":[],"mappings":"
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{"version":3,"file":"MergeExonsChange.js","sourceRoot":"","sources":["../../src/Changes/MergeExonsChange.ts"],"names":[],"mappings":"AAAA,oDAAoD;AACpD,qDAAqD;AACrD,4DAA4D;AAE5D,OAAO,EAGL,aAAa,GAId,MAAM,2BAA2B,CAAA;AAGlC,OAAO,EAAE,mBAAmB,EAAE,mBAAmB,EAAE,MAAM,YAAY,CAAA;AAErE,OAAO,EAAE,yBAAyB,EAAE,MAAM,0BAA0B,CAAA;AACpE,OAAO,EAAE,oBAAoB,EAAE,MAAM,2BAA2B,CAAA;AAyBhE,MAAM,OAAO,gBAAiB,SAAQ,aAAa;IACjD,QAAQ,GAAG,kBAA2B,CAAA;IACtC,OAAO,CAA2B;IAElC,YAAY,IAAgC,EAAE,OAAuB;QACnE,KAAK,CAAC,IAAI,EAAE,OAAO,CAAC,CAAA;QACpB,IAAI,CAAC,OAAO,GAAG,SAAS,IAAI,IAAI,CAAC,CAAC,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,CAAA;IAC1D,CAAC;IACD,2EAA2E;IAC3E,IAAI,YAAY;QACd,OAAO,2BAA2B,CAAA;IACpC,CAAC;IAED,MAAM;QACJ,MAAM,EAAE,QAAQ,EAAE,UAAU,EAAE,OAAO,EAAE,QAAQ,EAAE,GAAG,IAAI,CAAA;QACxD,IAAI,OAAO,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YACzB,MAAM,CAAC,EAAE,SAAS,EAAE,UAAU,EAAE,eAAe,EAAE,CAAC,GAAG,OAAO,CAAA;YAE5D,OAAO;gBACL,QAAQ;gBACR,UAAU;gBACV,QAAQ;gBACR,SAAS;gBACT,UAAU;gBACV,eAAe;aAChB,CAAA;QACH,CAAC;QACD,OAAO,EAAE,QAAQ,EAAE,UAAU,EAAE,QAAQ,EAAE,OAAO,EAAE,CAAA;IACpD,CAAC;IAED,KAAK,CAAC,eAAe,CAAC,OAAwB;QAC5C,MAAM,EAAE,YAAY,EAAE,OAAO,EAAE,GAAG,OAAO,CAAA;QACzC,MAAM,EAAE,OAAO,EAAE,MAAM,EAAE,GAAG,IAAI,CAAA;QAChC,KAAK,MAAM,MAAM,IAAI,OAAO,EAAE,CAAC;YAC7B,MAAM,EAAE,SAAS,EAAE,UAAU,EAAE,GAAG,MAAM,CAAA;YACxC,MAAM,eAAe,GAAG,MAAM,YAAY;iBACvC,OAAO,CAAC,EAAE,MAAM,EAAE,SAAS,CAAC,GAAG,EAAE,CAAC;iBAClC,OAAO,CAAC,OAAO,CAAC;iBAChB,IAAI,EAAE,CAAA;YACT,IAAI,CAAC,eAAe,EAAE,CAAC;gBACrB,MAAM,MAAM,GAAG,kEAAkE,SAAS,CAAC,GAAG,GAAG,CAAA;gBACjG,MAAM,CAAC,KAAK,CAAC,MAAM,CAAC,CAAA;gBACpB,MAAM,IAAI,KAAK,CAAC,MAAM,CAAC,CAAA;YACzB,CAAC;YACD,MAAM,UAAU,GAAG,IAAI,CAAC,gBAAgB,CAAC,eAAe,EAAE,SAAS,CAAC,GAAG,CAAC,CAAA;YACxE,IAAI,CAAC,UAAU,EAAE,CAAC;gBAChB,MAAM,MAAM,GAAG,2CAA2C,CAAA;gBAC1D,MAAM,CAAC,KAAK,CAAC,MAAM,CAAC,CAAA;gBACpB,MAAM,IAAI,KAAK,CAAC,MAAM,CAAC,CAAA;YACzB,CAAC;YACD,UAAU,CAAC,GAAG,GAAG,IAAI,CAAC,GAAG,CAAC,SAAS,CAAC,GAAG,EAAE,UAAU,CAAC,GAAG,CAAC,CAAA;YACxD,UAAU,CAAC,GAAG,GAAG,IAAI,CAAC,GAAG,CAAC,SAAS,CAAC,GAAG,EAAE,UAAU,CAAC,GAAG,CAAC,CAAA;YAExD,MAAM,gBAAgB,GAA6B,UAAU,CAAC,UAAU;gBACtE,CAAC,CAAC,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,SAAS,CAAC,UAAU,CAAC,UAAU,CAAC,CAAC;gBACnD,CAAC,CAAC,EAAE,CAAA;YACN,gBAAgB,CAAC,WAAW,GAAG;gBAC7B,mBAAmB,CAAC,mBAAmB,CAAC,UAAU,CAAC,UAAU,CAAC,CAAC;aAChE,CAAA;YACD,UAAU,CAAC,UAAU,GAAG,gBAAgB,CAAA;YAExC,MAAM,UAAU,GAAG,yBAAyB,CAC1C,eAAe,EACf,UAAU,CAAC,GAAG,EACd,IAAI,CACL,CAAA;YACD,UAAU,CAAC,IAAI,CAAC,UAAU,CAAC,GAAG,CAAC,CAAA;YAC/B,eAAe,CAAC,MAAM,GAAG,eAAe,CAAC,MAAM,CAAC,MAAM,CACpD,CAAC,EAAE,EAAE,EAAE,CAAC,CAAC,UAAU,CAAC,QAAQ,CAAC,EAAE,CAAC,CACjC,CAAA;YACD,MAAM,eAAe,CAAC,IAAI,EAAE,CAAA;QAC9B,CAAC;IACH,CAAC;IAED,KAAK,CAAC,kBAAkB,CAAC,QAA4B;QACnD,MAAM,IAAI,KAAK,CAAC,oCAAoC,CAAC,CAAA;IACvD,CAAC;IAED,KAAK,CAAC,eAAe,CAAC,SAA0B;QAC9C,uEAAuE;QACvE,IAAI,CAAC,SAAS,EAAE,CAAC;YACf,MAAM,IAAI,KAAK,CAAC,eAAe,CAAC,CAAA;QAClC,CAAC;QAED,KAAK,MAAM,MAAM,IAAI,IAAI,CAAC,OAAO,EAAE,CAAC;YAClC,MAAM,EAAE,SAAS,EAAE,UAAU,EAAE,GAAG,MAAM,CAAA;YACxC,MAAM,UAAU,GAAG,SAAS,CAAC,UAAU,CAAC,SAAS,CAAC,GAAG,CAAC,CAAA;YACtD,IAAI,CAAC,UAAU,EAAE,CAAC;gBAChB,MAAM,IAAI,KAAK,CACb,2CAA2C,SAAS,CAAC,GAAG,GAAG,CAC5D,CAAA;YACH,CAAC;YACD,UAAU,CAAC,MAAM,CAAC,IAAI,CAAC,GAAG,CAAC,SAAS,CAAC,GAAG,EAAE,UAAU,CAAC,GAAG,CAAC,CAAC,CAAA;YAC1D,UAAU,CAAC,MAAM,CAAC,IAAI,CAAC,GAAG,CAAC,SAAS,CAAC,GAAG,EAAE,UAAU,CAAC,GAAG,CAAC,CAAC,CAAA;YAE1D,MAAM,GAAG,GAAG,UAAU,CAAC,UAAU,CAAC,GAAG,CAAC,aAAa,CAAC,EAAE,KAAK,EAAE,IAAI,EAAE,CAAA;YACnE,MAAM,UAAU,GAAG,mBAAmB,CACpC,mBAAmB,CAAC,UAAU,CAAC,UAAU,CAAC,CAC3C,CAAA;YACD,IAAI,CAAC,GAAG,CAAC,QAAQ,CAAC,UAAU,CAAC,EAAE,CAAC;gBAC9B,GAAG,CAAC,IAAI,CAAC,UAAU,CAAC,CAAA;YACtB,CAAC;YACD,UAAU,CAAC,YAAY,CAAC,aAAa,EAAE,GAAG,CAAC,CAAA;YAE3C,UAAU,CAAC,MAAM,EAAE,WAAW,CAAC,UAAU,CAAC,GAAG,CAAC,CAAA;QAChD,CAAC;IACH,CAAC;IAED,UAAU;QACR,MAAM,EAAE,QAAQ,EAAE,UAAU,EAAE,OAAO,EAAE,MAAM,EAAE,GAAG,IAAI,CAAA;QACtD,MAAM,iBAAiB,GAAG,CAAC,GAAG,UAAU,CAAC,CAAC,OAAO,EAAE,CAAA;QACnD,MAAM,cAAc,GAAG,CAAC,GAAG,OAAO,CAAC,CAAC,OAAO,EAAE,CAAC,GAAG,CAAC,CAAC,eAAe,EAAE,EAAE,CAAC,CAAC;YACtE,cAAc,EAAE,CAAC,eAAe,CAAC,SAAS,EAAE,eAAe,CAAC,UAAU,CAAC;YACvE,eAAe,EAAE,eAAe,CAAC,eAAe;SACjD,CAAC,CAAC,CAAA;QACH,MAAM,CAAC,KAAK,EAAE,CAAC,mBAAmB,IAAI,CAAC,SAAS,CAAC,cAAc,CAAC,GAAG,CAAC,CAAA;QACpE,OAAO,IAAI,oBAAoB,CAC7B;YACE,UAAU,EAAE,iBAAiB;YAC7B,QAAQ,EAAE,sBAAsB;YAChC,OAAO,EAAE,cAAc;YACvB,QAAQ;SACT,EACD,EAAE,MAAM,EAAE,CACX,CAAA;IACH,CAAC;CAiCF"}
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1
1
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import { type ChangeOptions, type ClientDataStore, FeatureChange, type LocalGFF3DataStore, type SerializedFeatureChange, type ServerDataStore } from '@apollo-annotation/common';
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import {
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import {
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-
import { UndoMergeTranscriptsChange } from './UndoMergeTranscriptsChange';
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import type { AnnotationFeature, AnnotationFeatureSnapshot } from '@apollo-annotation/mst';
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import type { Feature } from '@apollo-annotation/schemas';
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import { UndoMergeTranscriptsChange } from './UndoMergeTranscriptsChange.js';
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interface SerializedMergeTranscriptsChangeBase extends SerializedFeatureChange {
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typeName: 'MergeTranscriptsChange';
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}
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@@ -32,3 +32,4 @@ export declare class MergeTranscriptsChange extends FeatureChange {
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getInverse(): UndoMergeTranscriptsChange;
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}
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export {};
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//# sourceMappingURL=MergeTranscriptsChange.d.ts.map
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{"version":3,"file":"MergeTranscriptsChange.d.ts","sourceRoot":"","sources":["../../src/Changes/MergeTranscriptsChange.ts"],"names":[],"mappings":"AAIA,OAAO,EACL,KAAK,aAAa,EAClB,KAAK,eAAe,EACpB,aAAa,EACb,KAAK,kBAAkB,EACvB,KAAK,uBAAuB,EAC5B,KAAK,eAAe,EACrB,MAAM,2BAA2B,CAAA;AAClC,OAAO,KAAK,EACV,iBAAiB,EACjB,yBAAyB,EAC1B,MAAM,wBAAwB,CAAA;AAC/B,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,4BAA4B,CAAA;AAOzD,OAAO,EAAE,0BAA0B,EAAE,MAAM,iCAAiC,CAAA;AAE5E,UAAU,oCAAqC,SAAQ,uBAAuB;IAC5E,QAAQ,EAAE,wBAAwB,CAAA;CACnC;AAED,MAAM,WAAW,6BAA6B;IAC5C,eAAe,EAAE,yBAAyB,CAAA;IAC1C,gBAAgB,EAAE,yBAAyB,CAAA;IAC3C,eAAe,EAAE,MAAM,CAAA;CACxB;AAED,UAAU,sCACR,SAAQ,oCAAoC,EAC1C,6BAA6B;CAAG;AAEpC,UAAU,wCACR,SAAQ,oCAAoC;IAC5C,OAAO,EAAE,6BAA6B,EAAE,CAAA;CACzC;AAED,MAAM,MAAM,gCAAgC,GACxC,sCAAsC,GACtC,wCAAwC,CAAA;AAE5C,qBAAa,sBAAuB,SAAQ,aAAa;IACvD,QAAQ,2BAAoC;IAC5C,OAAO,EAAE,6BAA6B,EAAE,CAAA;gBAE5B,IAAI,EAAE,gCAAgC,EAAE,OAAO,CAAC,EAAE,aAAa;IAK3E,IAAI,YAAY,WAEf;IAED,MAAM,IAAI,gCAAgC;IAiBpC,eAAe,CAAC,OAAO,EAAE,eAAe;IAqC9C,wBAAwB,CACtB,eAAe,EAAE,OAAO,EACxB,gBAAgB,EAAE,yBAAyB;IA+B7C,kCAAkC,CAChC,kBAAkB,EAAE,yBAAyB,EAC7C,eAAe,EAAE,OAAO;IAiGpB,eAAe,CAAC,SAAS,EAAE,eAAe;IAgBhD,wBAAwB,CACtB,eAAe,EAAE,iBAAiB,EAClC,gBAAgB,EAAE,yBAAyB;IA4B7C,kCAAkC,CAChC,kBAAkB,EAAE,yBAAyB,EAC7C,eAAe,EAAE,iBAAiB;IAuE9B,kBAAkB,CAAC,QAAQ,EAAE,kBAAkB;IAIrD,UAAU;CAuBX"}
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1
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-
"use strict";
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/* eslint-disable unicorn/prefer-structured-clone */
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/* eslint-disable @typescript-eslint/require-await */
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/* eslint-disable @typescript-eslint/no-unsafe-assignment */
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const UndoMergeTranscriptsChange_1 = require("./UndoMergeTranscriptsChange");
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class MergeTranscriptsChange extends common_1.FeatureChange {
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4
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import { FeatureChange, } from '@apollo-annotation/common';
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5
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import { doesIntersect2 } from '@jbrowse/core/util';
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import { getSnapshot } from '@jbrowse/mobx-state-tree';
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import { attributesToRecords, stringifyAttributes } from '../util.js';
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import { findAndDeleteChildFeature } from './DeleteFeatureChange.js';
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import { UndoMergeTranscriptsChange } from './UndoMergeTranscriptsChange.js';
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export class MergeTranscriptsChange extends FeatureChange {
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typeName = 'MergeTranscriptsChange';
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changes;
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constructor(json, options) {
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@@ -57,7 +54,7 @@ class MergeTranscriptsChange extends common_1.FeatureChange {
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throw new Error(errMsg);
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}
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this.mergeTranscriptsOnServer(mergedTranscript, secondTranscript);
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const deletedIds =
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const deletedIds = findAndDeleteChildFeature(topLevelFeature, secondTranscript._id, this);
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deletedIds.push(secondTranscript._id);
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topLevelFeature.allIds = topLevelFeature.allIds.filter((id) => !deletedIds.includes(id));
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}
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mergedAttributes.merged_with.push(
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mergedAttributes.merged_with.push(stringifyAttributes(attributesToRecords(secondTranscript.attributes)));
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}
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firstTranscript.attributes = mergedAttributes;
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if (secondTranscript.children) {
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@@ -99,8 +96,8 @@ class MergeTranscriptsChange extends common_1.FeatureChange {
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}
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if (mrgChild.type === secondFeatureChild.type &&
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mrgChild.type === firstFeatureChild.type &&
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doesIntersect2(secondFeatureChild.min, secondFeatureChild.max, mrgChild.min, mrgChild.max) &&
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doesIntersect2(firstFeatureChild.min, firstFeatureChild.max, mrgChild.min, mrgChild.max)) {
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mrgChild.min = Math.min(secondFeatureChild.min, mrgChild.min, firstFeatureChild.min);
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mrgChild.max = Math.max(secondFeatureChild.max, mrgChild.max, firstFeatureChild.max);
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if (!mrgChild.attributes) {
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@@ -111,12 +108,12 @@ class MergeTranscriptsChange extends common_1.FeatureChange {
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mrgChildAttr.merged_with = [];
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}
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const mergedWithAttributes = mrgChildAttr.merged_with;
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mergedWithAttributes.push(
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mergedWithAttributes.push(stringifyAttributes(attributesToRecords(secondFeatureChild.attributes)));
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if (toDelete) {
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const recs = firstFeatureChild.attributes
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? JSON.parse(JSON.stringify(firstFeatureChild.attributes))
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: undefined;
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mergedWithAttributes.push(
|
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mergedWithAttributes.push(stringifyAttributes(recs));
|
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|
firstTranscript.children.delete(firstFeatureChild._id.toString());
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}
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mrgChildAttr.merged_with = [...new Set(mergedWithAttributes)];
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@@ -160,7 +157,7 @@ class MergeTranscriptsChange extends common_1.FeatureChange {
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firstTranscript.setMin(Math.min(firstTranscript.min, secondTranscript.min));
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firstTranscript.setMax(Math.max(firstTranscript.max, secondTranscript.max));
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const mrg = firstTranscript.attributes.get('merged_with')?.slice() ?? [];
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const mergedWith =
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+
const mergedWith = stringifyAttributes(attributesToRecords(secondTranscript.attributes));
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if (!mrg.includes(mergedWith)) {
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// executeOnClient runs twice (?!) so avoid adding this key again
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mrg.push(mergedWith);
|
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@@ -189,14 +186,14 @@ class MergeTranscriptsChange extends common_1.FeatureChange {
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}
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if (mrgChild.type === secondFeatureChild.type &&
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mrgChild.type === firstFeatureChild.type &&
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-
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+
doesIntersect2(secondFeatureChild.min, secondFeatureChild.max, mrgChild.min, mrgChild.max) &&
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doesIntersect2(firstFeatureChild.min, firstFeatureChild.max, mrgChild.min, mrgChild.max)) {
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mrgChild.setMin(Math.min(secondFeatureChild.min, mrgChild.min, firstFeatureChild.min));
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mrgChild.setMax(Math.max(secondFeatureChild.max, mrgChild.max, firstFeatureChild.max));
|
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|
const mergedWithAttributes = mrgChild.attributes.get('merged_with')?.slice() ?? [];
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197
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-
mergedWithAttributes.push(
|
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194
|
+
mergedWithAttributes.push(stringifyAttributes(attributesToRecords(secondFeatureChild.attributes)));
|
|
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195
|
if (toDelete) {
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|
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mergedWithAttributes.push(
|
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|
+
mergedWithAttributes.push(stringifyAttributes(getSnapshot(firstFeatureChild).attributes));
|
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|
firstTranscript.deleteChild(firstFeatureChild._id);
|
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|
}
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|
mrgChild.setAttribute('merged_with', [...new Set(mergedWithAttributes)]);
|
|
@@ -209,7 +206,7 @@ class MergeTranscriptsChange extends common_1.FeatureChange {
|
|
|
209
206
|
});
|
|
210
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|
}
|
|
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208
|
if (merged && mrgChild) {
|
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|
-
firstTranscript.addChild(
|
|
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|
+
firstTranscript.addChild(getSnapshot(mrgChild));
|
|
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|
}
|
|
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else {
|
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|
// This secondFeatureChild has no overlap with any feature in the
|
|
@@ -233,7 +230,7 @@ class MergeTranscriptsChange extends common_1.FeatureChange {
|
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233
230
|
parentFeatureId: mergeTranscriptChange.parentFeatureId,
|
|
234
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|
}));
|
|
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|
logger.debug?.(`INVERSE CHANGE '${JSON.stringify(inverseChanges)}'`);
|
|
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|
-
return new
|
|
233
|
+
return new UndoMergeTranscriptsChange({
|
|
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|
changedIds: inverseChangedIds,
|
|
238
235
|
typeName: 'UndoMergeTranscriptsChange',
|
|
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|
changes: inverseChanges,
|
|
@@ -241,5 +238,4 @@ class MergeTranscriptsChange extends common_1.FeatureChange {
|
|
|
241
238
|
}, { logger });
|
|
242
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|
}
|
|
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|
}
|
|
244
|
-
exports.MergeTranscriptsChange = MergeTranscriptsChange;
|
|
245
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|
//# sourceMappingURL=MergeTranscriptsChange.js.map
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"MergeTranscriptsChange.js","sourceRoot":"","sources":["../../src/Changes/MergeTranscriptsChange.ts"],"names":[],"mappings":"
|
|
1
|
+
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@@ -1,6 +1,6 @@
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1
1
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import { type ChangeOptions, type ClientDataStore, FeatureChange, type LocalGFF3DataStore, type SerializedFeatureChange, type ServerDataStore } from '@apollo-annotation/common';
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2
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-
import {
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3
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-
import { UndoSplitExonChange } from './UndoSplitExonChange';
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2
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+
import type { AnnotationFeatureSnapshot } from '@apollo-annotation/mst';
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3
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+
import { UndoSplitExonChange } from './UndoSplitExonChange.js';
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4
4
|
interface SerializedSplitExonChangeBase extends SerializedFeatureChange {
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5
5
|
typeName: 'SplitExonChange';
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6
6
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}
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@@ -31,3 +31,4 @@ export declare class SplitExonChange extends FeatureChange {
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31
31
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makeSplitExons(exonToBeSplit: AnnotationFeatureSnapshot, upstreamCut: number, downstreamCut: number, leftExonId: string, rightExonId: string): AnnotationFeatureSnapshot[];
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32
32
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}
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33
33
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export {};
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34
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+
//# sourceMappingURL=SplitExonChange.d.ts.map
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@@ -0,0 +1 @@
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1
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+
{"version":3,"file":"SplitExonChange.d.ts","sourceRoot":"","sources":["../../src/Changes/SplitExonChange.ts"],"names":[],"mappings":"AAGA,OAAO,EACL,KAAK,aAAa,EAClB,KAAK,eAAe,EACpB,aAAa,EACb,KAAK,kBAAkB,EACvB,KAAK,uBAAuB,EAC5B,KAAK,eAAe,EACrB,MAAM,2BAA2B,CAAA;AAClC,OAAO,KAAK,EAAE,yBAAyB,EAAE,MAAM,wBAAwB,CAAA;AAGvE,OAAO,EAAE,mBAAmB,EAAE,MAAM,0BAA0B,CAAA;AAE9D,UAAU,6BAA8B,SAAQ,uBAAuB;IACrE,QAAQ,EAAE,iBAAiB,CAAA;CAC5B;AAED,MAAM,WAAW,sBAAsB;IACrC,aAAa,EAAE,yBAAyB,CAAA;IACxC,eAAe,EAAE,MAAM,CAAA;IACvB,WAAW,EAAE,MAAM,CAAA;IACnB,aAAa,EAAE,MAAM,CAAA;IACrB,UAAU,EAAE,MAAM,CAAA;IAClB,WAAW,EAAE,MAAM,CAAA;CACpB;AAED,UAAU,+BACR,SAAQ,6BAA6B,EACnC,sBAAsB;CAAG;AAE7B,UAAU,iCACR,SAAQ,6BAA6B;IACrC,OAAO,EAAE,sBAAsB,EAAE,CAAA;CAClC;AAED,MAAM,MAAM,yBAAyB,GACjC,+BAA+B,GAC/B,iCAAiC,CAAA;AACrC,qBAAa,eAAgB,SAAQ,aAAa;IAChD,QAAQ,oBAA6B;IACrC,OAAO,EAAE,sBAAsB,EAAE,CAAA;gBAErB,IAAI,EAAE,yBAAyB,EAAE,OAAO,CAAC,EAAE,aAAa;IAKpE,IAAI,YAAY,WAEf;IAED,MAAM,IAAI,yBAAyB;IA6B7B,eAAe,CAAC,OAAO,EAAE,eAAe;IAqExC,kBAAkB,CAAC,QAAQ,EAAE,kBAAkB;IAI/C,eAAe,CAAC,SAAS,EAAE,eAAe;IAwChD,UAAU;IAwBV,cAAc,CACZ,aAAa,EAAE,yBAAyB,EACxC,WAAW,EAAE,MAAM,EACnB,aAAa,EAAE,MAAM,EACrB,UAAU,EAAE,MAAM,EAClB,WAAW,EAAE,MAAM,GAClB,yBAAyB,EAAE;CAsB/B"}
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@@ -1,12 +1,9 @@
|
|
|
1
|
-
"use strict";
|
|
2
1
|
/* eslint-disable @typescript-eslint/require-await */
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3
2
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/* eslint-disable @typescript-eslint/no-unsafe-assignment */
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-
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-
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const UndoSplitExonChange_1 = require("./UndoSplitExonChange");
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9
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-
class SplitExonChange extends common_1.FeatureChange {
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3
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+
import { FeatureChange, } from '@apollo-annotation/common';
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4
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+
import { findAndDeleteChildFeature } from './DeleteFeatureChange.js';
|
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5
|
+
import { UndoSplitExonChange } from './UndoSplitExonChange.js';
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6
|
+
export class SplitExonChange extends FeatureChange {
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10
7
|
typeName = 'SplitExonChange';
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11
8
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changes;
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12
9
|
constructor(json, options) {
|
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@@ -70,7 +67,7 @@ class SplitExonChange extends common_1.FeatureChange {
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70
67
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});
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71
68
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// Child features should be sorted for click and drag of gene glyphs to work properly
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|
tx.children = new Map([...tx.children.entries()].sort((a, b) => a[1].min - b[1].min));
|
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|
-
const deletedIds =
|
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70
|
+
const deletedIds = findAndDeleteChildFeature(topLevelFeature, exonToBeSplit._id, this);
|
|
74
71
|
deletedIds.push(exonToBeSplit._id);
|
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75
72
|
topLevelFeature.allIds = topLevelFeature.allIds.filter((id) => !deletedIds.includes(id));
|
|
76
73
|
topLevelFeature.allIds.push(leftExon._id, rightExon._id);
|
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@@ -115,7 +112,7 @@ class SplitExonChange extends common_1.FeatureChange {
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115
112
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rightExonId: splitExonChange.rightExonId,
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116
113
|
}));
|
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117
114
|
logger.debug?.(`INVERSE CHANGE '${JSON.stringify(inverseChanges)}'`);
|
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118
|
-
return new
|
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115
|
+
return new UndoSplitExonChange({
|
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changedIds: inverseChangedIds,
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120
117
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typeName: 'UndoSplitExonChange',
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121
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changes: inverseChanges,
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@@ -138,5 +135,4 @@ class SplitExonChange extends common_1.FeatureChange {
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138
135
|
return [leftExon, rightExon];
|
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139
136
|
}
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140
137
|
}
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141
|
-
exports.SplitExonChange = SplitExonChange;
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142
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|
//# sourceMappingURL=SplitExonChange.js.map
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@@ -1 +1 @@
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|
1
|
-
{"version":3,"file":"SplitExonChange.js","sourceRoot":"","sources":["../../src/Changes/SplitExonChange.ts"],"names":[],"mappings":"
|
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1
|
+
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AAe,CAC/B,IAAI,CACmC,CAAA;QACzC,SAAS,CAAC,GAAG,GAAG,aAAa,CAAA;QAC7B,SAAS,CAAC,GAAG,GAAG,WAAW,CAAA;QAE3B,OAAO,CAAC,QAAQ,EAAE,SAAS,CAAC,CAAA;IAC9B,CAAC;CACF"}
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@@ -0,0 +1 @@
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1
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+
{"version":3,"file":"StrandChange.d.ts","sourceRoot":"","sources":["../../src/Changes/StrandChange.ts"],"names":[],"mappings":"AAGA,OAAO,EACL,KAAK,aAAa,EAClB,KAAK,eAAe,EACpB,aAAa,EACb,KAAK,kBAAkB,EACvB,KAAK,uBAAuB,EAC5B,KAAK,eAAe,EACrB,MAAM,2BAA2B,CAAA;AAGlC,UAAU,0BAA2B,SAAQ,uBAAuB;IAClE,QAAQ,EAAE,cAAc,CAAA;CACzB;AAED,UAAU,mBAAmB;IAC3B,SAAS,EAAE,MAAM,CAAA;IACjB,SAAS,EAAE,CAAC,CAAC,GAAG,CAAC,GAAG,SAAS,CAAA;IAC7B,SAAS,EAAE,CAAC,CAAC,GAAG,CAAC,GAAG,SAAS,CAAA;CAC9B;AAED,UAAU,4BACR,SAAQ,0BAA0B,EAChC,mBAAmB;CAAG;AAE1B,UAAU,8BAA+B,SAAQ,0BAA0B;IACzE,OAAO,EAAE,mBAAmB,EAAE,CAAA;CAC/B;AAED,KAAK,sBAAsB,GACvB,4BAA4B,GAC5B,8BAA8B,CAAA;AAElC,qBAAa,YAAa,SAAQ,aAAa;IAC7C,QAAQ,iBAA0B;IAClC,OAAO,EAAE,mBAAmB,EAAE,CAAA;gBAElB,IAAI,EAAE,sBAAsB,EAAE,OAAO,CAAC,EAAE,aAAa;IAKjE,MAAM,IAAI,sBAAsB;IAShC;;;;OAIG;IACG,eAAe,CAAC,OAAO,EAAE,eAAe;IAiExC,kBAAkB,CAAC,QAAQ,EAAE,kBAAkB;IAI/C,eAAe,CAAC,SAAS,EAAE,eAAe;IAahD,UAAU;CAkBX"}
|
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@@ -1,11 +1,8 @@
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|
|
1
|
-
"use strict";
|
|
2
|
-
Object.defineProperty(exports, "__esModule", { value: true });
|
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3
|
-
exports.StrandChange = void 0;
|
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4
1
|
/* eslint-disable @typescript-eslint/restrict-template-expressions */
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5
2
|
/* eslint-disable @typescript-eslint/require-await */
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6
3
|
/* eslint-disable @typescript-eslint/no-unnecessary-condition */
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7
|
-
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8
|
-
class StrandChange extends
|
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4
|
+
import { FeatureChange, } from '@apollo-annotation/common';
|
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5
|
+
export class StrandChange extends FeatureChange {
|
|
9
6
|
typeName = 'StrandChange';
|
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10
7
|
changes;
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11
8
|
constructor(json, options) {
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@@ -110,5 +107,4 @@ class StrandChange extends common_1.FeatureChange {
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|
110
107
|
}, { logger });
|
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111
108
|
}
|
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112
109
|
}
|
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113
|
-
exports.StrandChange = StrandChange;
|
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114
110
|
//# sourceMappingURL=StrandChange.js.map
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@@ -1 +1 @@
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1
|
-
{"version":3,"file":"StrandChange.js","sourceRoot":"","sources":["../../src/Changes/StrandChange.ts"],"names":[],"mappings":"
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1
|
+
{"version":3,"file":"StrandChange.js","sourceRoot":"","sources":["../../src/Changes/StrandChange.ts"],"names":[],"mappings":"AAAA,qEAAqE;AACrE,qDAAqD;AACrD,gEAAgE;AAChE,OAAO,EAGL,aAAa,GAId,MAAM,2BAA2B,CAAA;AAyBlC,MAAM,OAAO,YAAa,SAAQ,aAAa;IAC7C,QAAQ,GAAG,cAAuB,CAAA;IAClC,OAAO,CAAuB;IAE9B,YAAY,IAA4B,EAAE,OAAuB;QAC/D,KAAK,CAAC,IAAI,EAAE,OAAO,CAAC,CAAA;QACpB,IAAI,CAAC,OAAO,GAAG,SAAS,IAAI,IAAI,CAAC,CAAC,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,CAAA;IAC1D,CAAC;IAED,MAAM;QACJ,MAAM,EAAE,QAAQ,EAAE,UAAU,EAAE,OAAO,EAAE,QAAQ,EAAE,GAAG,IAAI,CAAA;QACxD,IAAI,OAAO,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YACzB,MAAM,CAAC,EAAE,SAAS,EAAE,SAAS,EAAE,SAAS,EAAE,CAAC,GAAG,OAAO,CAAA;YACrD,OAAO,EAAE,QAAQ,EAAE,UAAU,EAAE,QAAQ,EAAE,SAAS,EAAE,SAAS,EAAE,SAAS,EAAE,CAAA;QAC5E,CAAC;QACD,OAAO,EAAE,QAAQ,EAAE,UAAU,EAAE,QAAQ,EAAE,OAAO,EAAE,CAAA;IACpD,CAAC;IAED;;;;OAIG;IACH,KAAK,CAAC,eAAe,CAAC,OAAwB;QAC5C,MAAM,EAAE,YAAY,EAAE,OAAO,EAAE,GAAG,OAAO,CAAA;QACzC,MAAM,EAAE,OAAO,EAAE,MAAM,EAAE,GAAG,IAAI,CAAA;QAChC,MAAM,kBAAkB,GAGlB,EAAE,CAAA;QACR,wJAAwJ;QACxJ,KAAK,MAAM,KAAK,IAAI,OAAO,EAAE,CAAC;YAC5B,MAAM,EAAE,SAAS,EAAE,SAAS,EAAE,GAAG,KAAK,CAAA;YAEtC,yBAAyB;YACzB,MAAM,eAAe,GAAG,MAAM,YAAY;iBACvC,OAAO,CAAC,EAAE,MAAM,EAAE,SAAS,EAAE,CAAC;iBAC9B,OAAO,CAAC,OAAO,CAAC;iBAChB,IAAI,EAAE,CAAA;YAET,IAAI,CAAC,eAAe,EAAE,CAAC;gBACrB,MAAM,MAAM,GAAG,kEAAkE,SAAS,GAAG,CAAA;gBAC7F,MAAM,CAAC,KAAK,CAAC,MAAM,CAAC,CAAA;gBACpB,MAAM,IAAI,KAAK,CAAC,MAAM,CAAC,CAAA;gBACvB,uHAAuH;YACzH,CAAC;YACD,MAAM,CAAC,KAAK,EAAE,CAAC,sBAAsB,IAAI,CAAC,SAAS,CAAC,eAAe,CAAC,EAAE,CAAC,CAAA;YAEvE,MAAM,YAAY,GAAG,IAAI,CAAC,gBAAgB,CAAC,eAAe,EAAE,SAAS,CAAC,CAAA;YACtE,IAAI,CAAC,YAAY,EAAE,CAAC;gBAClB,MAAM,MAAM,GAAG,2CAA2C,CAAA;gBAC1D,MAAM,CAAC,KAAK,CAAC,MAAM,CAAC,CAAA;gBACpB,MAAM,IAAI,KAAK,CAAC,MAAM,CAAC,CAAA;YACzB,CAAC;YACD,MAAM,CAAC,KAAK,EAAE,CAAC,sBAAsB,IAAI,CAAC,SAAS,CAAC,YAAY,CAAC,EAAE,CAAC,CAAA;YACpE,IAAI,YAAY,CAAC,MAAM,KAAK,SAAS,EAAE,CAAC;gBACtC,MAAM,MAAM,GAAG,wCAAwC,eAAe,CAAC,MAAM,wCAAwC,SAAS,GAAG,CAAA;gBACjI,MAAM,CAAC,KAAK,CAAC,MAAM,CAAC,CAAA;gBACpB,MAAM,IAAI,KAAK,CAAC,MAAM,CAAC,CAAA;YACzB,CAAC;YACD,kBAAkB,CAAC,IAAI,CAAC,EAAE,OAAO,EAAE,YAAY,EAAE,eAAe,EAAE,CAAC,CAAA;QACrE,CAAC;QAED,wBAAwB;QACxB,KAAK,MAAM,CAAC,GAAG,EAAE,MAAM,CAAC,IAAI,OAAO,CAAC,OAAO,EAAE,EAAE,CAAC;YAC9C,MAAM,EAAE,SAAS,EAAE,GAAG,MAAM,CAAA;YAC5B,MAAM,EAAE,OAAO,EAAE,eAAe,EAAE,GAAG,kBAAkB,CAAC,GAAG,CAAC,CAAA;YAC5D,OAAO,CAAC,MAAM,GAAG,SAAS,CAAA;YAC1B,IAAI,eAAe,CAAC,GAAG,CAAC,MAAM,CAAC,OAAO,CAAC,GAAG,CAAC,EAAE,CAAC;gBAC5C,eAAe,CAAC,YAAY,CAAC,QAAQ,CAAC,CAAA,CAAC,iFAAiF;YAC1H,CAAC;iBAAM,CAAC;gBACN,eAAe,CAAC,YAAY,CAAC,UAAU,CAAC,CAAA,CAAC,iFAAiF;YAC5H,CAAC;YAED,IAAI,CAAC;gBACH,MAAM,eAAe,CAAC,IAAI,EAAE,CAAA;YAC9B,CAAC;YAAC,OAAO,KAAK,EAAE,CAAC;gBACf,MAAM,CAAC,KAAK,EAAE,CAAC,eAAe,KAAK,EAAE,CAAC,CAAA;gBACtC,MAAM,KAAK,CAAA;YACb,CAAC;YACD,MAAM,CAAC,KAAK,EAAE,CACZ,4CAA4C,IAAI,CAAC,SAAS,CACxD,eAAe,CAChB,EAAE,CACJ,CAAA;QACH,CAAC;IACH,CAAC;IAED,KAAK,CAAC,kBAAkB,CAAC,QAA4B;QACnD,MAAM,IAAI,KAAK,CAAC,oCAAoC,CAAC,CAAA;IACvD,CAAC;IAED,KAAK,CAAC,eAAe,CAAC,SAA0B;QAC9C,IAAI,CAAC,SAAS,EAAE,CAAC;YACf,MAAM,IAAI,KAAK,CAAC,eAAe,CAAC,CAAA;QAClC,CAAC;QACD,KAAK,MAAM,CAAC,GAAG,EAAE,SAAS,CAAC,IAAI,IAAI,CAAC,UAAU,CAAC,OAAO,EAAE,EAAE,CAAC;YACzD,MAAM,OAAO,GAAG,SAAS,CAAC,UAAU,CAAC,SAAS,CAAC,CAAA;YAC/C,IAAI,CAAC,OAAO,EAAE,CAAC;gBACb,MAAM,IAAI,KAAK,CAAC,2CAA2C,SAAS,GAAG,CAAC,CAAA;YAC1E,CAAC;YACD,OAAO,CAAC,SAAS,CAAC,IAAI,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,SAAS,CAAC,CAAA;QAChD,CAAC;IACH,CAAC;IAED,UAAU;QACR,MAAM,EAAE,QAAQ,EAAE,UAAU,EAAE,OAAO,EAAE,MAAM,EAAE,QAAQ,EAAE,GAAG,IAAI,CAAA;QAChE,MAAM,iBAAiB,GAAG,CAAC,GAAG,UAAU,CAAC,CAAC,OAAO,EAAE,CAAA;QACnD,MAAM,cAAc,GAAG,CAAC,GAAG,OAAO,CAAC,CAAC,OAAO,EAAE,CAAC,GAAG,CAAC,CAAC,SAAS,EAAE,EAAE,CAAC,CAAC;YAChE,SAAS,EAAE,SAAS,CAAC,SAAS;YAC9B,SAAS,EAAE,SAAS,CAAC,SAAS;YAC9B,SAAS,EAAE,SAAS,CAAC,SAAS;SAC/B,CAAC,CAAC,CAAA;QACH,OAAO,IAAI,YAAY,CACrB;YACE,UAAU,EAAE,iBAAiB;YAC7B,QAAQ;YACR,OAAO,EAAE,cAAc;YACvB,QAAQ;SACT,EACD,EAAE,MAAM,EAAE,CACX,CAAA;IACH,CAAC;CACF"}
|
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@@ -0,0 +1 @@
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1
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+
{"version":3,"file":"TypeChange.d.ts","sourceRoot":"","sources":["../../src/Changes/TypeChange.ts"],"names":[],"mappings":"AAGA,OAAO,EACL,KAAK,aAAa,EAClB,KAAK,eAAe,EACpB,aAAa,EACb,KAAK,kBAAkB,EACvB,KAAK,uBAAuB,EAC5B,KAAK,eAAe,EACrB,MAAM,2BAA2B,CAAA;AAGlC,UAAU,wBAAyB,SAAQ,uBAAuB;IAChE,QAAQ,EAAE,YAAY,CAAA;CACvB;AAED,UAAU,iBAAiB;IACzB,SAAS,EAAE,MAAM,CAAA;IACjB,OAAO,EAAE,MAAM,CAAA;IACf,OAAO,EAAE,MAAM,CAAA;CAChB;AAED,UAAU,0BACR,SAAQ,wBAAwB,EAC9B,iBAAiB;CAAG;AAExB,UAAU,4BAA6B,SAAQ,wBAAwB;IACrE,OAAO,EAAE,iBAAiB,EAAE,CAAA;CAC7B;AAED,MAAM,MAAM,oBAAoB,GAC5B,0BAA0B,GAC1B,4BAA4B,CAAA;AAEhC,qBAAa,UAAW,SAAQ,aAAa;IAC3C,QAAQ,eAAwB;IAChC,OAAO,EAAE,iBAAiB,EAAE,CAAA;gBAEhB,IAAI,EAAE,oBAAoB,EAAE,OAAO,CAAC,EAAE,aAAa;IAK/D,MAAM,IAAI,oBAAoB;IAS9B;;;;OAIG;IACG,eAAe,CAAC,OAAO,EAAE,eAAe;IAiExC,kBAAkB,CAAC,QAAQ,EAAE,kBAAkB;IAI/C,eAAe,CAAC,SAAS,EAAE,eAAe;IAahD,UAAU;CAkBX"}
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@@ -1,11 +1,8 @@
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1
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-
"use strict";
|
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2
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-
Object.defineProperty(exports, "__esModule", { value: true });
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3
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exports.TypeChange = void 0;
|
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4
1
|
/* eslint-disable @typescript-eslint/restrict-template-expressions */
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/* eslint-disable @typescript-eslint/require-await */
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/* eslint-disable @typescript-eslint/no-unnecessary-condition */
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7
|
-
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8
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-
class TypeChange extends
|
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4
|
+
import { FeatureChange, } from '@apollo-annotation/common';
|
|
5
|
+
export class TypeChange extends FeatureChange {
|
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9
6
|
typeName = 'TypeChange';
|
|
10
7
|
changes;
|
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11
8
|
constructor(json, options) {
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@@ -110,5 +107,4 @@ class TypeChange extends common_1.FeatureChange {
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}, { logger });
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}
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}
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exports.TypeChange = TypeChange;
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//# sourceMappingURL=TypeChange.js.map
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@@ -1 +1 @@
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1
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-
{"version":3,"file":"TypeChange.js","sourceRoot":"","sources":["../../src/Changes/TypeChange.ts"],"names":[],"mappings":"
|
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1
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+
{"version":3,"file":"TypeChange.js","sourceRoot":"","sources":["../../src/Changes/TypeChange.ts"],"names":[],"mappings":"AAAA,qEAAqE;AACrE,qDAAqD;AACrD,gEAAgE;AAChE,OAAO,EAGL,aAAa,GAId,MAAM,2BAA2B,CAAA;AAyBlC,MAAM,OAAO,UAAW,SAAQ,aAAa;IAC3C,QAAQ,GAAG,YAAqB,CAAA;IAChC,OAAO,CAAqB;IAE5B,YAAY,IAA0B,EAAE,OAAuB;QAC7D,KAAK,CAAC,IAAI,EAAE,OAAO,CAAC,CAAA;QACpB,IAAI,CAAC,OAAO,GAAG,SAAS,IAAI,IAAI,CAAC,CAAC,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,CAAA;IAC1D,CAAC;IAED,MAAM;QACJ,MAAM,EAAE,QAAQ,EAAE,UAAU,EAAE,OAAO,EAAE,QAAQ,EAAE,GAAG,IAAI,CAAA;QACxD,IAAI,OAAO,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YACzB,MAAM,CAAC,EAAE,SAAS,EAAE,OAAO,EAAE,OAAO,EAAE,CAAC,GAAG,OAAO,CAAA;YACjD,OAAO,EAAE,QAAQ,EAAE,UAAU,EAAE,QAAQ,EAAE,SAAS,EAAE,OAAO,EAAE,OAAO,EAAE,CAAA;QACxE,CAAC;QACD,OAAO,EAAE,QAAQ,EAAE,UAAU,EAAE,QAAQ,EAAE,OAAO,EAAE,CAAA;IACpD,CAAC;IAED;;;;OAIG;IACH,KAAK,CAAC,eAAe,CAAC,OAAwB;QAC5C,MAAM,EAAE,YAAY,EAAE,OAAO,EAAE,GAAG,OAAO,CAAA;QACzC,MAAM,EAAE,OAAO,EAAE,MAAM,EAAE,GAAG,IAAI,CAAA;QAChC,MAAM,kBAAkB,GAGlB,EAAE,CAAA;QACR,wJAAwJ;QACxJ,KAAK,MAAM,KAAK,IAAI,OAAO,EAAE,CAAC;YAC5B,MAAM,EAAE,SAAS,EAAE,OAAO,EAAE,GAAG,KAAK,CAAA;YAEpC,yBAAyB;YACzB,MAAM,eAAe,GAAG,MAAM,YAAY;iBACvC,OAAO,CAAC,EAAE,MAAM,EAAE,SAAS,EAAE,CAAC;iBAC9B,OAAO,CAAC,OAAO,CAAC;iBAChB,IAAI,EAAE,CAAA;YAET,IAAI,CAAC,eAAe,EAAE,CAAC;gBACrB,MAAM,MAAM,GAAG,kEAAkE,SAAS,GAAG,CAAA;gBAC7F,MAAM,CAAC,KAAK,CAAC,MAAM,CAAC,CAAA;gBACpB,MAAM,IAAI,KAAK,CAAC,MAAM,CAAC,CAAA;gBACvB,uHAAuH;YACzH,CAAC;YACD,MAAM,CAAC,KAAK,EAAE,CAAC,sBAAsB,IAAI,CAAC,SAAS,CAAC,eAAe,CAAC,EAAE,CAAC,CAAA;YAEvE,MAAM,YAAY,GAAG,IAAI,CAAC,gBAAgB,CAAC,eAAe,EAAE,SAAS,CAAC,CAAA;YACtE,IAAI,CAAC,YAAY,EAAE,CAAC;gBAClB,MAAM,MAAM,GAAG,2CAA2C,CAAA;gBAC1D,MAAM,CAAC,KAAK,CAAC,MAAM,CAAC,CAAA;gBACpB,MAAM,IAAI,KAAK,CAAC,MAAM,CAAC,CAAA;YACzB,CAAC;YACD,MAAM,CAAC,KAAK,EAAE,CAAC,sBAAsB,IAAI,CAAC,SAAS,CAAC,YAAY,CAAC,EAAE,CAAC,CAAA;YACpE,IAAI,YAAY,CAAC,IAAI,KAAK,OAAO,EAAE,CAAC;gBAClC,MAAM,MAAM,GAAG,sCAAsC,eAAe,CAAC,IAAI,wCAAwC,OAAO,GAAG,CAAA;gBAC3H,MAAM,CAAC,KAAK,CAAC,MAAM,CAAC,CAAA;gBACpB,MAAM,IAAI,KAAK,CAAC,MAAM,CAAC,CAAA;YACzB,CAAC;YACD,kBAAkB,CAAC,IAAI,CAAC,EAAE,OAAO,EAAE,YAAY,EAAE,eAAe,EAAE,CAAC,CAAA;QACrE,CAAC;QAED,wBAAwB;QACxB,KAAK,MAAM,CAAC,GAAG,EAAE,MAAM,CAAC,IAAI,OAAO,CAAC,OAAO,EAAE,EAAE,CAAC;YAC9C,MAAM,EAAE,OAAO,EAAE,GAAG,MAAM,CAAA;YAC1B,MAAM,EAAE,OAAO,EAAE,eAAe,EAAE,GAAG,kBAAkB,CAAC,GAAG,CAAC,CAAA;YAC5D,OAAO,CAAC,IAAI,GAAG,OAAO,CAAA;YACtB,IAAI,eAAe,CAAC,GAAG,CAAC,MAAM,CAAC,OAAO,CAAC,GAAG,CAAC,EAAE,CAAC;gBAC5C,eAAe,CAAC,YAAY,CAAC,MAAM,CAAC,CAAA,CAAC,iFAAiF;YACxH,CAAC;iBAAM,CAAC;gBACN,eAAe,CAAC,YAAY,CAAC,UAAU,CAAC,CAAA,CAAC,iFAAiF;YAC5H,CAAC;YAED,IAAI,CAAC;gBACH,MAAM,eAAe,CAAC,IAAI,EAAE,CAAA;YAC9B,CAAC;YAAC,OAAO,KAAK,EAAE,CAAC;gBACf,MAAM,CAAC,KAAK,EAAE,CAAC,eAAe,KAAK,EAAE,CAAC,CAAA;gBACtC,MAAM,KAAK,CAAA;YACb,CAAC;YACD,MAAM,CAAC,KAAK,EAAE,CACZ,4CAA4C,IAAI,CAAC,SAAS,CACxD,eAAe,CAChB,EAAE,CACJ,CAAA;QACH,CAAC;IACH,CAAC;IAED,KAAK,CAAC,kBAAkB,CAAC,QAA4B;QACnD,MAAM,IAAI,KAAK,CAAC,oCAAoC,CAAC,CAAA;IACvD,CAAC;IAED,KAAK,CAAC,eAAe,CAAC,SAA0B;QAC9C,IAAI,CAAC,SAAS,EAAE,CAAC;YACf,MAAM,IAAI,KAAK,CAAC,eAAe,CAAC,CAAA;QAClC,CAAC;QACD,KAAK,MAAM,CAAC,GAAG,EAAE,SAAS,CAAC,IAAI,IAAI,CAAC,UAAU,CAAC,OAAO,EAAE,EAAE,CAAC;YACzD,MAAM,OAAO,GAAG,SAAS,CAAC,UAAU,CAAC,SAAS,CAAC,CAAA;YAC/C,IAAI,CAAC,OAAO,EAAE,CAAC;gBACb,MAAM,IAAI,KAAK,CAAC,2CAA2C,SAAS,GAAG,CAAC,CAAA;YAC1E,CAAC;YACD,OAAO,CAAC,OAAO,CAAC,IAAI,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,OAAO,CAAC,CAAA;QAC5C,CAAC;IACH,CAAC;IAED,UAAU;QACR,MAAM,EAAE,QAAQ,EAAE,UAAU,EAAE,OAAO,EAAE,MAAM,EAAE,QAAQ,EAAE,GAAG,IAAI,CAAA;QAChE,MAAM,iBAAiB,GAAG,CAAC,GAAG,UAAU,CAAC,CAAC,OAAO,EAAE,CAAA;QACnD,MAAM,cAAc,GAAG,CAAC,GAAG,OAAO,CAAC,CAAC,OAAO,EAAE,CAAC,GAAG,CAAC,CAAC,SAAS,EAAE,EAAE,CAAC,CAAC;YAChE,SAAS,EAAE,SAAS,CAAC,SAAS;YAC9B,OAAO,EAAE,SAAS,CAAC,OAAO;YAC1B,OAAO,EAAE,SAAS,CAAC,OAAO;SAC3B,CAAC,CAAC,CAAA;QACH,OAAO,IAAI,UAAU,CACnB;YACE,UAAU,EAAE,iBAAiB;YAC7B,QAAQ;YACR,OAAO,EAAE,cAAc;YACvB,QAAQ;SACT,EACD,EAAE,MAAM,EAAE,CACX,CAAA;IACH,CAAC;CACF"}
|
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@@ -1,6 +1,6 @@
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1
1
|
import { type ChangeOptions, type ClientDataStore, FeatureChange, type LocalGFF3DataStore, type SerializedFeatureChange, type ServerDataStore } from '@apollo-annotation/common';
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2
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-
import {
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3
|
-
import { MergeExonsChange } from './MergeExonsChange';
|
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2
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+
import type { AnnotationFeatureSnapshot } from '@apollo-annotation/mst';
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3
|
+
import { MergeExonsChange } from './MergeExonsChange.js';
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4
4
|
interface SerializedUndoMergeExonsChangeBase extends SerializedFeatureChange {
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5
5
|
typeName: 'UndoMergeExonsChange';
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6
6
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}
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@@ -25,3 +25,4 @@ export declare class UndoMergeExonsChange extends FeatureChange {
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25
25
|
getInverse(): MergeExonsChange;
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26
26
|
}
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|
export {};
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+
//# sourceMappingURL=UndoMergeExonsChange.d.ts.map
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@@ -0,0 +1 @@
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1
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+
{"version":3,"file":"UndoMergeExonsChange.d.ts","sourceRoot":"","sources":["../../src/Changes/UndoMergeExonsChange.ts"],"names":[],"mappings":"AAEA,OAAO,EACL,KAAK,aAAa,EAClB,KAAK,eAAe,EACpB,aAAa,EACb,KAAK,kBAAkB,EACvB,KAAK,uBAAuB,EAC5B,KAAK,eAAe,EACrB,MAAM,2BAA2B,CAAA;AAClC,OAAO,KAAK,EAAE,yBAAyB,EAAE,MAAM,wBAAwB,CAAA;AAEvE,OAAO,EAAE,gBAAgB,EAAE,MAAM,uBAAuB,CAAA;AAExD,UAAU,kCAAmC,SAAQ,uBAAuB;IAC1E,QAAQ,EAAE,sBAAsB,CAAA;CACjC;AAED,MAAM,WAAW,2BAA2B;IAC1C,cAAc,EAAE,yBAAyB,EAAE,CAAA;IAC3C,eAAe,EAAE,MAAM,CAAA;CACxB;AAED,UAAU,oCACR,SAAQ,kCAAkC,EACxC,2BAA2B;CAAG;AAElC,UAAU,sCACR,SAAQ,kCAAkC;IAC1C,OAAO,EAAE,2BAA2B,EAAE,CAAA;CACvC;AAED,MAAM,MAAM,8BAA8B,GACtC,oCAAoC,GACpC,sCAAsC,CAAA;AAC1C,qBAAa,oBAAqB,SAAQ,aAAa;IACrD,QAAQ,yBAAkC;IAC1C,OAAO,EAAE,2BAA2B,EAAE,CAAA;gBAE1B,IAAI,EAAE,8BAA8B,EAAE,OAAO,CAAC,EAAE,aAAa;IAKzE,MAAM,IAAI,8BAA8B;IAgBlC,eAAe,CAAC,OAAO,EAAE,eAAe;IAsCxC,kBAAkB,CAAC,QAAQ,EAAE,kBAAkB;IAI/C,eAAe,CAAC,SAAS,EAAE,eAAe;IAyBhD,UAAU;CAqBX"}
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@@ -1,10 +1,7 @@
|
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1
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-
"use strict";
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2
1
|
/* eslint-disable @typescript-eslint/require-await */
|
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3
|
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4
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5
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|
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6
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-
const MergeExonsChange_1 = require("./MergeExonsChange");
|
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7
|
-
class UndoMergeExonsChange extends common_1.FeatureChange {
|
|
2
|
+
import { FeatureChange, } from '@apollo-annotation/common';
|
|
3
|
+
import { MergeExonsChange } from './MergeExonsChange.js';
|
|
4
|
+
export class UndoMergeExonsChange extends FeatureChange {
|
|
8
5
|
typeName = 'UndoMergeExonsChange';
|
|
9
6
|
changes;
|
|
10
7
|
constructor(json, options) {
|
|
@@ -92,7 +89,7 @@ class UndoMergeExonsChange extends common_1.FeatureChange {
|
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|
92
89
|
secondExon: undoMergeExonsChange.exonsToRestore[1],
|
|
93
90
|
parentFeatureId: undoMergeExonsChange.parentFeatureId,
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return new
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return new MergeExonsChange({
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exports.UndoMergeExonsChange = UndoMergeExonsChange;
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//# sourceMappingURL=UndoMergeExonsChange.js.map
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{"version":3,"file":"UndoMergeExonsChange.js","sourceRoot":"","sources":["../../src/Changes/UndoMergeExonsChange.ts"],"names":[],"mappings":"
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{"version":3,"file":"UndoMergeExonsChange.js","sourceRoot":"","sources":["../../src/Changes/UndoMergeExonsChange.ts"],"names":[],"mappings":"AAAA,qDAAqD;AAErD,OAAO,EAGL,aAAa,GAId,MAAM,2BAA2B,CAAA;AAGlC,OAAO,EAAE,gBAAgB,EAAE,MAAM,uBAAuB,CAAA;AAuBxD,MAAM,OAAO,oBAAqB,SAAQ,aAAa;IACrD,QAAQ,GAAG,sBAA+B,CAAA;IAC1C,OAAO,CAA+B;IAEtC,YAAY,IAAoC,EAAE,OAAuB;QACvE,KAAK,CAAC,IAAI,EAAE,OAAO,CAAC,CAAA;QACpB,IAAI,CAAC,OAAO,GAAG,SAAS,IAAI,IAAI,CAAC,CAAC,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,CAAA;IAC1D,CAAC;IAED,MAAM;QACJ,MAAM,EAAE,QAAQ,EAAE,UAAU,EAAE,OAAO,EAAE,QAAQ,EAAE,GAAG,IAAI,CAAA;QACxD,IAAI,OAAO,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YACzB,MAAM,CAAC,EAAE,cAAc,EAAE,eAAe,EAAE,CAAC,GAAG,OAAO,CAAA;YAErD,OAAO;gBACL,QAAQ;gBACR,UAAU;gBACV,QAAQ;gBACR,cAAc;gBACd,eAAe;aAChB,CAAA;QACH,CAAC;QACD,OAAO,EAAE,QAAQ,EAAE,UAAU,EAAE,QAAQ,EAAE,OAAO,EAAE,CAAA;IACpD,CAAC;IAED,KAAK,CAAC,eAAe,CAAC,OAAwB;QAC5C,MAAM,EAAE,YAAY,EAAE,OAAO,EAAE,GAAG,OAAO,CAAA;QACzC,MAAM,EAAE,OAAO,EAAE,GAAG,IAAI,CAAA;QACxB,KAAK,MAAM,MAAM,IAAI,OAAO,EAAE,CAAC;YAC7B,MAAM,EAAE,cAAc,EAAE,eAAe,EAAE,GAAG,MAAM,CAAA;YAClD,IAAI,cAAc,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;gBAChC,MAAM,IAAI,KAAK,CACb,+CAA+C,cAAc,CAAC,MAAM,EAAE,CACvE,CAAA;YACH,CAAC;YACD,MAAM,eAAe,GAAG,MAAM,YAAY;iBACvC,OAAO,CAAC,EAAE,MAAM,EAAE,eAAe,EAAE,CAAC;iBACpC,OAAO,CAAC,OAAO,CAAC;iBAChB,IAAI,EAAE,CAAA;YACT,IAAI,CAAC,eAAe,EAAE,CAAC;gBACrB,MAAM,IAAI,KAAK,CAAC,mCAAmC,eAAe,GAAG,CAAC,CAAA;YACxE,CAAC;YACD,MAAM,aAAa,GAAG,IAAI,CAAC,gBAAgB,CACzC,eAAe,EACf,eAAe,CAChB,CAAA;YACD,IAAI,CAAC,aAAa,EAAE,CAAC;gBACnB,MAAM,IAAI,KAAK,CACb,mCAAmC,eAAe,iBAAiB,eAAe,CAAC,GAAG,CAAC,QAAQ,EAAE,GAAG,CACrG,CAAA;YACH,CAAC;YACD,IAAI,CAAC,aAAa,CAAC,QAAQ,EAAE,CAAC;gBAC5B,aAAa,CAAC,QAAQ,GAAG,IAAI,GAAG,EAAE,CAAA;YACpC,CAAC;YACD,KAAK,MAAM,IAAI,IAAI,cAAc,EAAE,CAAC;gBAClC,IAAI,CAAC,QAAQ,CAAC,aAAa,EAAE,IAAI,CAAC,CAAA;gBAClC,MAAM,QAAQ,GAAG,IAAI,CAAC,kBAAkB,CAAC,IAAI,CAAC,CAAA;gBAC9C,eAAe,CAAC,MAAM,CAAC,IAAI,CAAC,IAAI,CAAC,GAAG,EAAE,GAAG,QAAQ,CAAC,CAAA;YACpD,CAAC;YACD,MAAM,eAAe,CAAC,IAAI,EAAE,CAAA;QAC9B,CAAC;IACH,CAAC;IAED,KAAK,CAAC,kBAAkB,CAAC,QAA4B;QACnD,MAAM,IAAI,KAAK,CAAC,oCAAoC,CAAC,CAAA;IACvD,CAAC;IAED,KAAK,CAAC,eAAe,CAAC,SAA0B;QAC9C,uEAAuE;QACvE,IAAI,CAAC,SAAS,EAAE,CAAC;YACf,MAAM,IAAI,KAAK,CAAC,eAAe,CAAC,CAAA;QAClC,CAAC;QACD,MAAM,EAAE,OAAO,EAAE,GAAG,IAAI,CAAA;QACxB,KAAK,MAAM,MAAM,IAAI,OAAO,EAAE,CAAC;YAC7B,MAAM,EAAE,cAAc,EAAE,eAAe,EAAE,GAAG,MAAM,CAAA;YAClD,IAAI,CAAC,eAAe,EAAE,CAAC;gBACrB,MAAM,IAAI,KAAK,CAAC,sBAAsB,CAAC,CAAA;YACzC,CAAC;YACD,MAAM,aAAa,GAAG,SAAS,CAAC,UAAU,CAAC,eAAe,CAAC,CAAA;YAC3D,IAAI,CAAC,aAAa,EAAE,CAAC;gBACnB,MAAM,IAAI,KAAK,CAAC,kCAAkC,eAAe,GAAG,CAAC,CAAA;YACvE,CAAC;YACD,8DAA8D;YAC9D,IAAI,CAAC,aAAa,CAAC,UAAU,CAAC,GAAG,CAAC,KAAK,CAAC,EAAE,CAAC;gBACzC,aAAa,CAAC,YAAY,CAAC,KAAK,EAAE,CAAC,aAAa,CAAC,GAAG,CAAC,CAAC,CAAA;YACxD,CAAC;YACD,KAAK,MAAM,IAAI,IAAI,cAAc,EAAE,CAAC;gBAClC,aAAa,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAA;YAC9B,CAAC;QACH,CAAC;IACH,CAAC;IAED,UAAU;QACR,MAAM,EAAE,QAAQ,EAAE,UAAU,EAAE,OAAO,EAAE,MAAM,EAAE,GAAG,IAAI,CAAA;QACtD,MAAM,iBAAiB,GAAG,CAAC,GAAG,UAAU,CAAC,CAAC,OAAO,EAAE,CAAA;QACnD,MAAM,cAAc,GAAG,CAAC,GAAG,OAAO,CAAC;aAChC,OAAO,EAAE;aACT,GAAG,CAAC,CAAC,oBAAoB,EAAE,EAAE,CAAC,CAAC;YAC9B,SAAS,EAAE,oBAAoB,CAAC,cAAc,CAAC,CAAC,CAAC;YACjD,UAAU,EAAE,oBAAoB,CAAC,cAAc,CAAC,CAAC,CAAC;YAClD,eAAe,EAAE,oBAAoB,CAAC,eAAe;SACtD,CAAC,CAAC,CAAA;QAEL,OAAO,IAAI,gBAAgB,CACzB;YACE,UAAU,EAAE,iBAAiB;YAC7B,QAAQ,EAAE,kBAAkB;YAC5B,OAAO,EAAE,cAAc;YACvB,QAAQ;SACT,EACD,EAAE,MAAM,EAAE,CACX,CAAA;IACH,CAAC;CACF"}
|
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@@ -1,6 +1,6 @@
|
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1
1
|
import { type ChangeOptions, type ClientDataStore, FeatureChange, type LocalGFF3DataStore, type SerializedFeatureChange, type ServerDataStore } from '@apollo-annotation/common';
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2
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-
import {
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3
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-
import { MergeTranscriptsChange } from './MergeTranscriptsChange';
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+
import type { AnnotationFeatureSnapshot } from '@apollo-annotation/mst';
|
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3
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+
import { MergeTranscriptsChange } from './MergeTranscriptsChange.js';
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interface SerializedUndoMergeTranscriptsChangeBase extends SerializedFeatureChange {
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typeName: 'UndoMergeTranscriptsChange';
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}
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//# sourceMappingURL=UndoMergeTranscriptsChange.d.ts.map
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1
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+
{"version":3,"file":"UndoMergeTranscriptsChange.d.ts","sourceRoot":"","sources":["../../src/Changes/UndoMergeTranscriptsChange.ts"],"names":[],"mappings":"AAEA,OAAO,EACL,KAAK,aAAa,EAClB,KAAK,eAAe,EACpB,aAAa,EACb,KAAK,kBAAkB,EACvB,KAAK,uBAAuB,EAC5B,KAAK,eAAe,EACrB,MAAM,2BAA2B,CAAA;AAClC,OAAO,KAAK,EAAE,yBAAyB,EAAE,MAAM,wBAAwB,CAAA;AAEvE,OAAO,EAAE,sBAAsB,EAAE,MAAM,6BAA6B,CAAA;AAEpE,UAAU,wCACR,SAAQ,uBAAuB;IAC/B,QAAQ,EAAE,4BAA4B,CAAA;CACvC;AAED,MAAM,WAAW,iCAAiC;IAChD,oBAAoB,EAAE,yBAAyB,EAAE,CAAA;IACjD,eAAe,EAAE,MAAM,CAAA;CACxB;AAED,UAAU,0CACR,SAAQ,wCAAwC,EAC9C,iCAAiC;CAAG;AAExC,UAAU,4CACR,SAAQ,wCAAwC;IAChD,OAAO,EAAE,iCAAiC,EAAE,CAAA;CAC7C;AAED,MAAM,MAAM,oCAAoC,GAC5C,0CAA0C,GAC1C,4CAA4C,CAAA;AAChD,qBAAa,0BAA2B,SAAQ,aAAa;IAC3D,QAAQ,+BAAwC;IAChD,OAAO,EAAE,iCAAiC,EAAE,CAAA;gBAG1C,IAAI,EAAE,oCAAoC,EAC1C,OAAO,CAAC,EAAE,aAAa;IAMzB,MAAM,IAAI,oCAAoC;IAgBxC,eAAe,CAAC,OAAO,EAAE,eAAe;IAsCxC,kBAAkB,CAAC,QAAQ,EAAE,kBAAkB;IAI/C,eAAe,CAAC,SAAS,EAAE,eAAe;IAyBhD,UAAU;CAqBX"}
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@@ -1,10 +1,7 @@
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1
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-
"use strict";
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1
|
/* eslint-disable @typescript-eslint/require-await */
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|
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-
|
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const MergeTranscriptsChange_1 = require("./MergeTranscriptsChange");
|
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class UndoMergeTranscriptsChange extends common_1.FeatureChange {
|
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2
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+
import { FeatureChange, } from '@apollo-annotation/common';
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3
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+
import { MergeTranscriptsChange } from './MergeTranscriptsChange.js';
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4
|
+
export class UndoMergeTranscriptsChange extends FeatureChange {
|
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8
5
|
typeName = 'UndoMergeTranscriptsChange';
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6
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changes;
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7
|
constructor(json, options) {
|
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@@ -92,7 +89,7 @@ class UndoMergeTranscriptsChange extends common_1.FeatureChange {
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secondTranscript: undoMergeTranscriptsChange.transcriptsToRestore[1],
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parentFeatureId: undoMergeTranscriptsChange.parentFeatureId,
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}));
|
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return new
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return new MergeTranscriptsChange({
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changedIds: inverseChangedIds,
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}, { logger });
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}
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}
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exports.UndoMergeTranscriptsChange = UndoMergeTranscriptsChange;
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@@ -1 +1 @@
|
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1
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-
{"version":3,"file":"UndoMergeTranscriptsChange.js","sourceRoot":"","sources":["../../src/Changes/UndoMergeTranscriptsChange.ts"],"names":[],"mappings":"
|
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+
{"version":3,"file":"UndoMergeTranscriptsChange.js","sourceRoot":"","sources":["../../src/Changes/UndoMergeTranscriptsChange.ts"],"names":[],"mappings":"AAAA,qDAAqD;AAErD,OAAO,EAGL,aAAa,GAId,MAAM,2BAA2B,CAAA;AAGlC,OAAO,EAAE,sBAAsB,EAAE,MAAM,6BAA6B,CAAA;AAwBpE,MAAM,OAAO,0BAA2B,SAAQ,aAAa;IAC3D,QAAQ,GAAG,4BAAqC,CAAA;IAChD,OAAO,CAAqC;IAE5C,YACE,IAA0C,EAC1C,OAAuB;QAEvB,KAAK,CAAC,IAAI,EAAE,OAAO,CAAC,CAAA;QACpB,IAAI,CAAC,OAAO,GAAG,SAAS,IAAI,IAAI,CAAC,CAAC,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,CAAA;IAC1D,CAAC;IAED,MAAM;QACJ,MAAM,EAAE,QAAQ,EAAE,UAAU,EAAE,OAAO,EAAE,QAAQ,EAAE,GAAG,IAAI,CAAA;QACxD,IAAI,OAAO,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YACzB,MAAM,CAAC,EAAE,oBAAoB,EAAE,eAAe,EAAE,CAAC,GAAG,OAAO,CAAA;YAE3D,OAAO;gBACL,QAAQ;gBACR,UAAU;gBACV,QAAQ;gBACR,oBAAoB;gBACpB,eAAe;aAChB,CAAA;QACH,CAAC;QACD,OAAO,EAAE,QAAQ,EAAE,UAAU,EAAE,QAAQ,EAAE,OAAO,EAAE,CAAA;IACpD,CAAC;IAED,KAAK,CAAC,eAAe,CAAC,OAAwB;QAC5C,MAAM,EAAE,YAAY,EAAE,OAAO,EAAE,GAAG,OAAO,CAAA;QACzC,MAAM,EAAE,OAAO,EAAE,GAAG,IAAI,CAAA;QACxB,KAAK,MAAM,MAAM,IAAI,OAAO,EAAE,CAAC;YAC7B,MAAM,EAAE,oBAAoB,EAAE,eAAe,EAAE,GAAG,MAAM,CAAA;YACxD,IAAI,oBAAoB,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;gBACtC,MAAM,IAAI,KAAK,CACb,qDAAqD,oBAAoB,CAAC,MAAM,EAAE,CACnF,CAAA;YACH,CAAC;YACD,MAAM,eAAe,GAAG,MAAM,YAAY;iBACvC,OAAO,CAAC,EAAE,MAAM,EAAE,eAAe,EAAE,CAAC;iBACpC,OAAO,CAAC,OAAO,CAAC;iBAChB,IAAI,EAAE,CAAA;YACT,IAAI,CAAC,eAAe,EAAE,CAAC;gBACrB,MAAM,IAAI,KAAK,CAAC,mCAAmC,eAAe,GAAG,CAAC,CAAA;YACxE,CAAC;YACD,MAAM,aAAa,GAAG,IAAI,CAAC,gBAAgB,CACzC,eAAe,EACf,eAAe,CAChB,CAAA;YACD,IAAI,CAAC,aAAa,EAAE,CAAC;gBACnB,MAAM,IAAI,KAAK,CACb,mCAAmC,eAAe,iBAAiB,eAAe,CAAC,GAAG,CAAC,QAAQ,EAAE,GAAG,CACrG,CAAA;YACH,CAAC;YACD,IAAI,CAAC,aAAa,CAAC,QAAQ,EAAE,CAAC;gBAC5B,aAAa,CAAC,QAAQ,GAAG,IAAI,GAAG,EAAE,CAAA;YACpC,CAAC;YACD,KAAK,MAAM,UAAU,IAAI,oBAAoB,EAAE,CAAC;gBAC9C,IAAI,CAAC,QAAQ,CAAC,aAAa,EAAE,UAAU,CAAC,CAAA;gBACxC,MAAM,QAAQ,GAAG,IAAI,CAAC,kBAAkB,CAAC,UAAU,CAAC,CAAA;gBACpD,eAAe,CAAC,MAAM,CAAC,IAAI,CAAC,UAAU,CAAC,GAAG,EAAE,GAAG,QAAQ,CAAC,CAAA;YAC1D,CAAC;YACD,MAAM,eAAe,CAAC,IAAI,EAAE,CAAA;QAC9B,CAAC;IACH,CAAC;IAED,KAAK,CAAC,kBAAkB,CAAC,QAA4B;QACnD,MAAM,IAAI,KAAK,CAAC,oCAAoC,CAAC,CAAA;IACvD,CAAC;IAED,KAAK,CAAC,eAAe,CAAC,SAA0B;QAC9C,uEAAuE;QACvE,IAAI,CAAC,SAAS,EAAE,CAAC;YACf,MAAM,IAAI,KAAK,CAAC,eAAe,CAAC,CAAA;QAClC,CAAC;QACD,MAAM,EAAE,OAAO,EAAE,GAAG,IAAI,CAAA;QACxB,KAAK,MAAM,MAAM,IAAI,OAAO,EAAE,CAAC;YAC7B,MAAM,EAAE,oBAAoB,EAAE,eAAe,EAAE,GAAG,MAAM,CAAA;YACxD,IAAI,CAAC,eAAe,EAAE,CAAC;gBACrB,MAAM,IAAI,KAAK,CAAC,sBAAsB,CAAC,CAAA;YACzC,CAAC;YACD,MAAM,aAAa,GAAG,SAAS,CAAC,UAAU,CAAC,eAAe,CAAC,CAAA;YAC3D,IAAI,CAAC,aAAa,EAAE,CAAC;gBACnB,MAAM,IAAI,KAAK,CAAC,kCAAkC,eAAe,GAAG,CAAC,CAAA;YACvE,CAAC;YACD,8DAA8D;YAC9D,IAAI,CAAC,aAAa,CAAC,UAAU,CAAC,GAAG,CAAC,KAAK,CAAC,EAAE,CAAC;gBACzC,aAAa,CAAC,YAAY,CAAC,KAAK,EAAE,CAAC,aAAa,CAAC,GAAG,CAAC,CAAC,CAAA;YACxD,CAAC;YACD,KAAK,MAAM,UAAU,IAAI,oBAAoB,EAAE,CAAC;gBAC9C,aAAa,CAAC,QAAQ,CAAC,UAAU,CAAC,CAAA;YACpC,CAAC;QACH,CAAC;IACH,CAAC;IAED,UAAU;QACR,MAAM,EAAE,QAAQ,EAAE,UAAU,EAAE,OAAO,EAAE,MAAM,EAAE,GAAG,IAAI,CAAA;QACtD,MAAM,iBAAiB,GAAG,CAAC,GAAG,UAAU,CAAC,CAAC,OAAO,EAAE,CAAA;QACnD,MAAM,cAAc,GAAG,CAAC,GAAG,OAAO,CAAC;aAChC,OAAO,EAAE;aACT,GAAG,CAAC,CAAC,0BAA0B,EAAE,EAAE,CAAC,CAAC;YACpC,eAAe,EAAE,0BAA0B,CAAC,oBAAoB,CAAC,CAAC,CAAC;YACnE,gBAAgB,EAAE,0BAA0B,CAAC,oBAAoB,CAAC,CAAC,CAAC;YACpE,eAAe,EAAE,0BAA0B,CAAC,eAAe;SAC5D,CAAC,CAAC,CAAA;QAEL,OAAO,IAAI,sBAAsB,CAC/B;YACE,UAAU,EAAE,iBAAiB;YAC7B,QAAQ,EAAE,wBAAwB;YAClC,OAAO,EAAE,cAAc;YACvB,QAAQ;SACT,EACD,EAAE,MAAM,EAAE,CACX,CAAA;IACH,CAAC;CACF"}
|
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@@ -1,6 +1,6 @@
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1
1
|
import { type ChangeOptions, type ClientDataStore, FeatureChange, type LocalGFF3DataStore, type SerializedFeatureChange, type ServerDataStore } from '@apollo-annotation/common';
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2
|
-
import {
|
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3
|
-
import { SplitExonChange } from './SplitExonChange';
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2
|
+
import type { AnnotationFeatureSnapshot } from '@apollo-annotation/mst';
|
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3
|
+
import { SplitExonChange } from './SplitExonChange.js';
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4
4
|
interface SerializedUndoSplitExonChangeBase extends SerializedFeatureChange {
|
|
5
5
|
typeName: 'UndoSplitExonChange';
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6
6
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}
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@@ -30,3 +30,4 @@ export declare class UndoSplitExonChange extends FeatureChange {
|
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30
30
|
getInverse(): SplitExonChange;
|
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31
31
|
}
|
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32
32
|
export {};
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33
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+
//# sourceMappingURL=UndoSplitExonChange.d.ts.map
|
|
@@ -0,0 +1 @@
|
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1
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+
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