@apollo-annotation/shared 0.1.21 → 0.2.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/Changes/AddAssemblyFromFileChange.js +9 -9
- package/dist/Changes/AddAssemblyFromFileChange.js.map +1 -1
- package/dist/tsconfig.tsbuildinfo +1 -1
- package/package.json +4 -7
- package/src/Changes/AddAssemblyFromFileChange.ts +9 -9
- package/src/Changes/DeleteUserChange.ts +1 -1
- package/tsconfig.json +1 -1
package/package.json
CHANGED
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@@ -1,6 +1,6 @@
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{
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"name": "@apollo-annotation/shared",
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-
"version": "0.
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"version": "0.2.0",
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"main": "./dist/index.js",
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"scripts": {
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"build": "yarn clean && tsc --build",
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@@ -10,17 +10,15 @@
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"test:ci": "NODE_V8_COVERAGE=./coverage glob -c \"tsx --test --test-reporter spec --experimental-test-coverage \" \"**/*.test.ts\""
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},
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"dependencies": {
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-
"@apollo-annotation/common": "^0.
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"@apollo-annotation/mst": "^0.
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"@apollo-annotation/schemas": "^0.
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"@apollo-annotation/common": "^0.2.0",
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"@apollo-annotation/mst": "^0.2.0",
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"@apollo-annotation/schemas": "^0.2.0",
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"@gmod/gff": "1.2.0",
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"@gmod/indexedfasta": "^2.0.4",
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"@jbrowse/core": "^2.13.1",
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"bson-objectid": "^2.0.4",
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"generic-filehandle": "^3.0.0",
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"jwt-decode": "^3.1.2",
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"regenerator-runtime": "^0.13.9",
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"socket.io-client": "^4.5.4",
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"tslib": "^2.3.1"
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},
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"devDependencies": {
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@@ -28,7 +26,6 @@
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"@nestjs/core": "^10.1.0",
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"@types/chai": "^4.3.19",
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"@types/node": "^18.14.2",
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"@types/rimraf": "^3",
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"chai": "^5.1.1",
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"chai-exclude": "^3.0.0",
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"glob": "^11.0.0",
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@@ -87,7 +87,7 @@ export class AddAssemblyFromFileChange extends FromFileBaseChange {
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throw new Error('No FILE_UPLOAD_FOLDER found in .env file')
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}
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-
const { fa, fai, gzi } = fileIds
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const { fa: faId, fai: faiId, gzi: gziId } = fileIds
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const {
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assemblyModel,
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checkModel,
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@@ -97,30 +97,30 @@ export class AddAssemblyFromFileChange extends FromFileBaseChange {
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user,
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} = backend
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const faDoc = await fileModel.findById(
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const faDoc = await fileModel.findById(faId)
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const faChecksum = faDoc?.checksum
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if (!faChecksum) {
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throw new Error(`No checksum for file document ${faDoc}`)
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}
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const faiDoc = await fileModel.findById(
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const faiDoc = await fileModel.findById(faiId)
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const faiChecksum = faiDoc?.checksum
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if (!faiChecksum) {
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throw new Error(`No checksum for file document ${faiDoc}`)
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}
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const gziDoc = await fileModel.findById(
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const gziDoc = await fileModel.findById(gziId)
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const gziChecksum = gziDoc?.checksum
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if (!gziChecksum) {
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throw new Error(`No checksum for file document ${gziDoc}`)
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}
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const
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-
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})
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const fasta = filesService.getFileHandle(faDoc)
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const fai = filesService.getFileHandle(faiDoc)
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const gzi = filesService.getFileHandle(gziDoc)
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const sequenceAdapter = new BgzipIndexedFasta({ fasta, fai, gzi })
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const allSequenceSizes = await sequenceAdapter.getSequenceSizes()
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await Promise.all([fasta.close(), fai.close(), gzi.close()])
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const assemblyDoc = await assemblyModel
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.findOne({ name: assemblyName })
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@@ -13,7 +13,7 @@ export interface SerializedDeleteUserChangeBase extends SerializedChange {
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userId: string
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}
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// eslint-disable-next-line @typescript-eslint/no-empty-
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// eslint-disable-next-line @typescript-eslint/no-empty-object-type
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export interface DeleteUserChangeDetails {}
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interface SerializedDeleteUserChangeSingle
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package/tsconfig.json
CHANGED