@apollo-annotation/schemas 0.1.18 → 0.1.20

package/dist/assembly.schema.d.ts

@@ -0,0 +1,24 @@
+import { Schema as MongooseSchema, Types } from 'mongoose';
+import { File } from './file.schema';
+export type AssemblyDocument = Assembly & Document;
+export declare class Assembly {
+    name: string;
+    displayName: string;
+    aliases: string[];
+    description: string;
+    status: number;
+    user: string;
+    externalLocation: {
+        fa: string;
+        fai: string;
+        gzi?: string;
+    };
+    fileIds: {
+        fa: string;
+        fai: string;
+        gzi: string;
+    };
+    checks: Types.ObjectId[];
+    file: File;
+}
+export declare const AssemblySchema: MongooseSchema<Assembly, import("mongoose").Model<Assembly, any, any, any, any>, {}, {}, {}, {}, import("mongoose").DefaultSchemaOptions, Assembly>;

package/dist/assembly.schema.js

@@ -0,0 +1,71 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.AssemblySchema = exports.Assembly = void 0;
+const tslib_1 = require("tslib");
+const mongoose_1 = require("@nestjs/mongoose");
+const mongoose_2 = require("mongoose");
+const file_schema_1 = require("./file.schema");
+let Assembly = class Assembly {
+    name;
+    displayName;
+    aliases;
+    description;
+    status;
+    user;
+    externalLocation;
+    fileIds; // Store fileId of fa/fai/gzi.
+    checks;
+    file;
+};
+exports.Assembly = Assembly;
+tslib_1.__decorate([
+    (0, mongoose_1.Prop)({ required: true }),
+    tslib_1.__metadata("design:type", String)
+], Assembly.prototype, "name", void 0);
+tslib_1.__decorate([
+    (0, mongoose_1.Prop)(),
+    tslib_1.__metadata("design:type", String)
+], Assembly.prototype, "displayName", void 0);
+tslib_1.__decorate([
+    (0, mongoose_1.Prop)({ type: [String] }),
+    tslib_1.__metadata("design:type", Array)
+], Assembly.prototype, "aliases", void 0);
+tslib_1.__decorate([
+    (0, mongoose_1.Prop)(),
+    tslib_1.__metadata("design:type", String)
+], Assembly.prototype, "description", void 0);
+tslib_1.__decorate([
+    (0, mongoose_1.Prop)(),
+    tslib_1.__metadata("design:type", Number)
+], Assembly.prototype, "status", void 0);
+tslib_1.__decorate([
+    (0, mongoose_1.Prop)(),
+    tslib_1.__metadata("design:type", String)
+], Assembly.prototype, "user", void 0);
+tslib_1.__decorate([
+    (0, mongoose_1.Prop)({ type: { fa: String, fai: String, gzi: String } }),
+    tslib_1.__metadata("design:type", Object)
+], Assembly.prototype, "externalLocation", void 0);
+tslib_1.__decorate([
+    (0, mongoose_1.Prop)({
+        type: {
+            fa: { type: mongoose_2.Schema.Types.ObjectId, ref: 'File' },
+            fai: { type: mongoose_2.Schema.Types.ObjectId, ref: 'File' },
+            gzi: { type: mongoose_2.Schema.Types.ObjectId, ref: 'File' },
+        },
+    }),
+    tslib_1.__metadata("design:type", Object)
+], Assembly.prototype, "fileIds", void 0);
+tslib_1.__decorate([
+    (0, mongoose_1.Prop)({ type: [{ type: mongoose_2.Schema.Types.ObjectId, ref: 'Check' }] }),
+    tslib_1.__metadata("design:type", Array)
+], Assembly.prototype, "checks", void 0);
+tslib_1.__decorate([
+    (0, mongoose_1.Prop)({ type: mongoose_2.Schema.Types.ObjectId, ref: 'File' }),
+    tslib_1.__metadata("design:type", file_schema_1.File)
+], Assembly.prototype, "file", void 0);
+exports.Assembly = Assembly = tslib_1.__decorate([
+    (0, mongoose_1.Schema)()
+], Assembly);
+exports.AssemblySchema = mongoose_1.SchemaFactory.createForClass(Assembly);
+//# sourceMappingURL=assembly.schema.js.map

package/dist/assembly.schema.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"assembly.schema.js","sourceRoot":"","sources":["../src/assembly.schema.ts"],"names":[],"mappings":";;;;AAAA,+CAA8D;AAC9D,uCAA0D;AAE1D,+CAAoC;AAK7B,IAAM,QAAQ,GAAd,MAAM,QAAQ;IAEnB,IAAI,CAAQ;IAGZ,WAAW,CAAQ;IAGnB,OAAO,CAAU;IAGjB,WAAW,CAAQ;IAGnB,MAAM,CAAQ;IAGd,IAAI,CAAQ;IAGZ,gBAAgB,CAA2C;IAS3D,OAAO,CAA0C,CAAC,8BAA8B;IAGhF,MAAM,CAAkB;IAGxB,IAAI,CAAM;CACX,CAAA;AApCY,4BAAQ;AAEnB;IADC,IAAA,eAAI,EAAC,EAAE,QAAQ,EAAE,IAAI,EAAE,CAAC;;sCACb;AAGZ;IADC,IAAA,eAAI,GAAE;;6CACY;AAGnB;IADC,IAAA,eAAI,EAAC,EAAE,IAAI,EAAE,CAAC,MAAM,CAAC,EAAE,CAAC;;yCACR;AAGjB;IADC,IAAA,eAAI,GAAE;;6CACY;AAGnB;IADC,IAAA,eAAI,GAAE;;wCACO;AAGd;IADC,IAAA,eAAI,GAAE;;sCACK;AAGZ;IADC,IAAA,eAAI,EAAC,EAAE,IAAI,EAAE,EAAE,EAAE,EAAE,MAAM,EAAE,GAAG,EAAE,MAAM,EAAE,GAAG,EAAE,MAAM,EAAE,EAAE,CAAC;;kDACE;AAS3D;IAPC,IAAA,eAAI,EAAC;QACJ,IAAI,EAAE;YACJ,EAAE,EAAE,EAAE,IAAI,EAAE,iBAAc,CAAC,KAAK,CAAC,QAAQ,EAAE,GAAG,EAAE,MAAM,EAAE;YACxD,GAAG,EAAE,EAAE,IAAI,EAAE,iBAAc,CAAC,KAAK,CAAC,QAAQ,EAAE,GAAG,EAAE,MAAM,EAAE;YACzD,GAAG,EAAE,EAAE,IAAI,EAAE,iBAAc,CAAC,KAAK,CAAC,QAAQ,EAAE,GAAG,EAAE,MAAM,EAAE;SAC1D;KACF,CAAC;;yCAC+C;AAGjD;IADC,IAAA,eAAI,EAAC,EAAE,IAAI,EAAE,CAAC,EAAE,IAAI,EAAE,iBAAc,CAAC,KAAK,CAAC,QAAQ,EAAE,GAAG,EAAE,OAAO,EAAE,CAAC,EAAE,CAAC;;wCAChD;AAGxB;IADC,IAAA,eAAI,EAAC,EAAE,IAAI,EAAE,iBAAc,CAAC,KAAK,CAAC,QAAQ,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC;sCACrD,kBAAI;sCAAA;mBAnCC,QAAQ;IADpB,IAAA,iBAAM,GAAE;GACI,QAAQ,CAoCpB;AAEY,QAAA,cAAc,GAAG,wBAAa,CAAC,cAAc,CAAC,QAAQ,CAAC,CAAA"}

package/dist/change.schema.d.ts

@@ -0,0 +1,12 @@
+import { Document, Schema as MongooseSchema } from 'mongoose';
+export type ChangeDocument = Change & Document;
+export declare class Change {
+    assembly: MongooseSchema.Types.ObjectId;
+    typeName: string;
+    changedIds: string[];
+    changes: unknown;
+    reverts: Change;
+    user: string;
+    sequence: number;
+}
+export declare const ChangeSchema: MongooseSchema<Change, import("mongoose").Model<Change, any, any, any, any>, {}, {}, {}, {}, import("mongoose").DefaultSchemaOptions, Change>;

package/dist/change.schema.js

@@ -0,0 +1,50 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.ChangeSchema = exports.Change = void 0;
+const tslib_1 = require("tslib");
+const mongoose_1 = require("@nestjs/mongoose");
+const mongoose_2 = require("mongoose");
+let Change = class Change {
+    assembly;
+    typeName;
+    changedIds; // featureIds
+    changes; // serialized change
+    reverts;
+    user;
+    sequence;
+};
+exports.Change = Change;
+tslib_1.__decorate([
+    (0, mongoose_1.Prop)({ type: mongoose_2.Schema.Types.ObjectId }) // We cannot use FK anymore because assembly is deleted outside of transaction concept
+    ,
+    tslib_1.__metadata("design:type", mongoose_2.Schema.Types.ObjectId)
+], Change.prototype, "assembly", void 0);
+tslib_1.__decorate([
+    (0, mongoose_1.Prop)({ required: true }),
+    tslib_1.__metadata("design:type", String)
+], Change.prototype, "typeName", void 0);
+tslib_1.__decorate([
+    (0, mongoose_1.Prop)({ required: true, index: true }),
+    tslib_1.__metadata("design:type", Array)
+], Change.prototype, "changedIds", void 0);
+tslib_1.__decorate([
+    (0, mongoose_1.Prop)({ type: JSON }),
+    tslib_1.__metadata("design:type", Object)
+], Change.prototype, "changes", void 0);
+tslib_1.__decorate([
+    (0, mongoose_1.Prop)({ type: mongoose_2.Schema.Types.ObjectId, ref: 'Change' }),
+    tslib_1.__metadata("design:type", Change)
+], Change.prototype, "reverts", void 0);
+tslib_1.__decorate([
+    (0, mongoose_1.Prop)({ required: true, index: true }),
+    tslib_1.__metadata("design:type", String)
+], Change.prototype, "user", void 0);
+tslib_1.__decorate([
+    (0, mongoose_1.Prop)(),
+    tslib_1.__metadata("design:type", Number)
+], Change.prototype, "sequence", void 0);
+exports.Change = Change = tslib_1.__decorate([
+    (0, mongoose_1.Schema)({ timestamps: true })
+], Change);
+exports.ChangeSchema = mongoose_1.SchemaFactory.createForClass(Change);
+//# sourceMappingURL=change.schema.js.map

package/dist/change.schema.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"change.schema.js","sourceRoot":"","sources":["../src/change.schema.ts"],"names":[],"mappings":";;;;AAAA,+CAA8D;AAC9D,uCAA6D;AAKtD,IAAM,MAAM,GAAZ,MAAM,MAAM;IAEjB,QAAQ,CAA+B;IAGvC,QAAQ,CAAQ;IAGhB,UAAU,CAAU,CAAC,aAAa;IAGlC,OAAO,CAAS,CAAC,oBAAoB;IAGrC,OAAO,CAAQ;IAGf,IAAI,CAAQ;IAGZ,QAAQ,CAAQ;CACjB,CAAA;AArBY,wBAAM;AAEjB;IADC,IAAA,eAAI,EAAC,EAAE,IAAI,EAAE,iBAAc,CAAC,KAAK,CAAC,QAAQ,EAAE,CAAC,CAAC,sFAAsF;;sCAC3H,iBAAc,CAAC,KAAK,CAAC,QAAQ;wCAAA;AAGvC;IADC,IAAA,eAAI,EAAC,EAAE,QAAQ,EAAE,IAAI,EAAE,CAAC;;wCACT;AAGhB;IADC,IAAA,eAAI,EAAC,EAAE,QAAQ,EAAE,IAAI,EAAE,KAAK,EAAE,IAAI,EAAE,CAAC;;0CAClB;AAGpB;IADC,IAAA,eAAI,EAAC,EAAE,IAAI,EAAE,IAAI,EAAE,CAAC;;uCACL;AAGhB;IADC,IAAA,eAAI,EAAC,EAAE,IAAI,EAAE,iBAAc,CAAC,KAAK,CAAC,QAAQ,EAAE,GAAG,EAAE,QAAQ,EAAE,CAAC;sCACpD,MAAM;uCAAA;AAGf;IADC,IAAA,eAAI,EAAC,EAAE,QAAQ,EAAE,IAAI,EAAE,KAAK,EAAE,IAAI,EAAE,CAAC;;oCAC1B;AAGZ;IADC,IAAA,eAAI,GAAE;;wCACS;iBApBL,MAAM;IADlB,IAAA,iBAAM,EAAC,EAAE,UAAU,EAAE,IAAI,EAAE,CAAC;GAChB,MAAM,CAqBlB;AAEY,QAAA,YAAY,GAAG,wBAAa,CAAC,cAAc,CAAC,MAAM,CAAC,CAAA"}

package/dist/check.schema.d.ts

@@ -0,0 +1,12 @@
+import { HydratedDocument, Types } from 'mongoose';
+export interface CheckDocument extends HydratedDocument<Check> {
+    createdAt: Date;
+    updatedAt: Date;
+}
+export declare class Check {
+    _id: Types.ObjectId;
+    name: string;
+    default: boolean;
+    version: number;
+}
+export declare const CheckSchema: import("mongoose").Schema<Check, import("mongoose").Model<Check, any, any, any, any>, {}, {}, {}, {}, import("mongoose").DefaultSchemaOptions, Check>;

package/dist/check.schema.js

@@ -0,0 +1,30 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.CheckSchema = exports.Check = void 0;
+const tslib_1 = require("tslib");
+const mongoose_1 = require("@nestjs/mongoose");
+let Check = class Check {
+    // Don't make this a @Prop since _id is already on a MongoDB document
+    _id;
+    name;
+    default;
+    version;
+};
+exports.Check = Check;
+tslib_1.__decorate([
+    (0, mongoose_1.Prop)(),
+    tslib_1.__metadata("design:type", String)
+], Check.prototype, "name", void 0);
+tslib_1.__decorate([
+    (0, mongoose_1.Prop)(),
+    tslib_1.__metadata("design:type", Boolean)
+], Check.prototype, "default", void 0);
+tslib_1.__decorate([
+    (0, mongoose_1.Prop)(),
+    tslib_1.__metadata("design:type", Number)
+], Check.prototype, "version", void 0);
+exports.Check = Check = tslib_1.__decorate([
+    (0, mongoose_1.Schema)({ timestamps: true })
+], Check);
+exports.CheckSchema = mongoose_1.SchemaFactory.createForClass(Check);
+//# sourceMappingURL=check.schema.js.map

package/dist/check.schema.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"check.schema.js","sourceRoot":"","sources":["../src/check.schema.ts"],"names":[],"mappings":";;;;AAAA,+CAA8D;AASvD,IAAM,KAAK,GAAX,MAAM,KAAK;IAChB,qEAAqE;IACrE,GAAG,CAAgB;IAGnB,IAAI,CAAQ;IAGZ,OAAO,CAAS;IAGhB,OAAO,CAAQ;CAChB,CAAA;AAZY,sBAAK;AAKhB;IADC,IAAA,eAAI,GAAE;;mCACK;AAGZ;IADC,IAAA,eAAI,GAAE;;sCACS;AAGhB;IADC,IAAA,eAAI,GAAE;;sCACQ;gBAXJ,KAAK;IADjB,IAAA,iBAAM,EAAC,EAAE,UAAU,EAAE,IAAI,EAAE,CAAC;GAChB,KAAK,CAYjB;AACY,QAAA,WAAW,GAAG,wBAAa,CAAC,cAAc,CAAC,KAAK,CAAC,CAAA"}

package/dist/checkResult.schema.d.ts

@@ -0,0 +1,14 @@
+import type { CheckResultSnapshot } from '@apollo-annotation/mst';
+import { HydratedDocument, Schema as MongooseSchema, Types } from 'mongoose';
+export type CheckResultDocument = HydratedDocument<CheckResult>;
+export declare class CheckResult implements Omit<CheckResultSnapshot, '_id' | 'ids' | 'refSeq'> {
+    _id: Types.ObjectId;
+    name: string;
+    ids: Types.ObjectId[];
+    refSeq: Types.ObjectId;
+    start: number;
+    end: number;
+    ignored: boolean;
+    message: string;
+}
+export declare const CheckResultSchema: MongooseSchema<CheckResult, import("mongoose").Model<CheckResult, any, any, any, any>, {}, {}, {}, {}, import("mongoose").DefaultSchemaOptions, CheckResult>;

package/dist/checkResult.schema.js

@@ -0,0 +1,58 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.CheckResultSchema = exports.CheckResult = void 0;
+const tslib_1 = require("tslib");
+const mongoose_1 = require("@nestjs/mongoose");
+const mongoose_2 = require("mongoose");
+let CheckResult = class CheckResult {
+    // Don't make this a @Prop since _id is already on a MongoDB document
+    _id;
+    name;
+    ids;
+    refSeq;
+    start;
+    end;
+    ignored;
+    message;
+};
+exports.CheckResult = CheckResult;
+tslib_1.__decorate([
+    (0, mongoose_1.Prop)(),
+    tslib_1.__metadata("design:type", String)
+], CheckResult.prototype, "name", void 0);
+tslib_1.__decorate([
+    (0, mongoose_1.Prop)({ type: [mongoose_2.Schema.Types.ObjectId], required: true, index: true }),
+    tslib_1.__metadata("design:type", Array)
+], CheckResult.prototype, "ids", void 0);
+tslib_1.__decorate([
+    (0, mongoose_1.Prop)({
+        required: true,
+        index: true,
+        type: mongoose_2.Schema.Types.ObjectId,
+        ref: 'RefSeq',
+    }),
+    tslib_1.__metadata("design:type", mongoose_2.Types.ObjectId)
+], CheckResult.prototype, "refSeq", void 0);
+tslib_1.__decorate([
+    (0, mongoose_1.Prop)({ required: true }),
+    tslib_1.__metadata("design:type", Number)
+], CheckResult.prototype, "start", void 0);
+tslib_1.__decorate([
+    (0, mongoose_1.Prop)({ required: true }),
+    tslib_1.__metadata("design:type", Number)
+], CheckResult.prototype, "end", void 0);
+tslib_1.__decorate([
+    (0, mongoose_1.Prop)({ default: false }),
+    tslib_1.__metadata("design:type", Boolean)
+], CheckResult.prototype, "ignored", void 0);
+tslib_1.__decorate([
+    (0, mongoose_1.Prop)(),
+    tslib_1.__metadata("design:type", String)
+], CheckResult.prototype, "message", void 0);
+exports.CheckResult = CheckResult = tslib_1.__decorate([
+    (0, mongoose_1.Schema)()
+], CheckResult);
+exports.CheckResultSchema = mongoose_1.SchemaFactory.createForClass(CheckResult);
+exports.CheckResultSchema.index({ refSeq: 1, start: 1 });
+exports.CheckResultSchema.index({ refSeq: 1, end: 1 });
+//# sourceMappingURL=checkResult.schema.js.map

package/dist/checkResult.schema.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"checkResult.schema.js","sourceRoot":"","sources":["../src/checkResult.schema.ts"],"names":[],"mappings":";;;;AACA,+CAA8D;AAC9D,uCAA4E;AAKrE,IAAM,WAAW,GAAjB,MAAM,WAAW;IAGtB,qEAAqE;IACrE,GAAG,CAAgB;IAGnB,IAAI,CAAQ;IAGZ,GAAG,CAAkB;IAQrB,MAAM,CAAgB;IAGtB,KAAK,CAAQ;IAGb,GAAG,CAAQ;IAGX,OAAO,CAAS;IAGhB,OAAO,CAAQ;CAChB,CAAA;AA/BY,kCAAW;AAOtB;IADC,IAAA,eAAI,GAAE;;yCACK;AAGZ;IADC,IAAA,eAAI,EAAC,EAAE,IAAI,EAAE,CAAC,iBAAc,CAAC,KAAK,CAAC,QAAQ,CAAC,EAAE,QAAQ,EAAE,IAAI,EAAE,KAAK,EAAE,IAAI,EAAE,CAAC;;wCACxD;AAQrB;IANC,IAAA,eAAI,EAAC;QACJ,QAAQ,EAAE,IAAI;QACd,KAAK,EAAE,IAAI;QACX,IAAI,EAAE,iBAAc,CAAC,KAAK,CAAC,QAAQ;QACnC,GAAG,EAAE,QAAQ;KACd,CAAC;sCACM,gBAAK,CAAC,QAAQ;2CAAA;AAGtB;IADC,IAAA,eAAI,EAAC,EAAE,QAAQ,EAAE,IAAI,EAAE,CAAC;;0CACZ;AAGb;IADC,IAAA,eAAI,EAAC,EAAE,QAAQ,EAAE,IAAI,EAAE,CAAC;;wCACd;AAGX;IADC,IAAA,eAAI,EAAC,EAAE,OAAO,EAAE,KAAK,EAAE,CAAC;;4CACT;AAGhB;IADC,IAAA,eAAI,GAAE;;4CACQ;sBA9BJ,WAAW;IADvB,IAAA,iBAAM,GAAE;GACI,WAAW,CA+BvB;AACY,QAAA,iBAAiB,GAAG,wBAAa,CAAC,cAAc,CAAC,WAAW,CAAC,CAAA;AAE1E,yBAAiB,CAAC,KAAK,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,KAAK,EAAE,CAAC,EAAE,CAAC,CAAA;AAChD,yBAAiB,CAAC,KAAK,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,GAAG,EAAE,CAAC,EAAE,CAAC,CAAA"}

package/dist/counter.schema.d.ts

@@ -0,0 +1,7 @@
+import { Document } from 'mongoose';
+export type CounterDocument = Counter & Document;
+export declare class Counter {
+    sequenceValue: number;
+    id: string;
+}
+export declare const CounterSchema: import("mongoose").Schema<Counter, import("mongoose").Model<Counter, any, any, any, any>, {}, {}, {}, {}, import("mongoose").DefaultSchemaOptions, Counter>;

package/dist/counter.schema.js

@@ -0,0 +1,23 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.CounterSchema = exports.Counter = void 0;
+const tslib_1 = require("tslib");
+const mongoose_1 = require("@nestjs/mongoose");
+let Counter = class Counter {
+    sequenceValue;
+    id;
+};
+exports.Counter = Counter;
+tslib_1.__decorate([
+    (0, mongoose_1.Prop)({ default: 0, required: true }),
+    tslib_1.__metadata("design:type", Number)
+], Counter.prototype, "sequenceValue", void 0);
+tslib_1.__decorate([
+    (0, mongoose_1.Prop)({ required: true }),
+    tslib_1.__metadata("design:type", String)
+], Counter.prototype, "id", void 0);
+exports.Counter = Counter = tslib_1.__decorate([
+    (0, mongoose_1.Schema)()
+], Counter);
+exports.CounterSchema = mongoose_1.SchemaFactory.createForClass(Counter);
+//# sourceMappingURL=counter.schema.js.map

package/dist/counter.schema.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"counter.schema.js","sourceRoot":"","sources":["../src/counter.schema.ts"],"names":[],"mappings":";;;;AAAA,+CAA8D;AAMvD,IAAM,OAAO,GAAb,MAAM,OAAO;IAElB,aAAa,CAAQ;IAGrB,EAAE,CAAQ;CACX,CAAA;AANY,0BAAO;AAElB;IADC,IAAA,eAAI,EAAC,EAAE,OAAO,EAAE,CAAC,EAAE,QAAQ,EAAE,IAAI,EAAE,CAAC;;8CAChB;AAGrB;IADC,IAAA,eAAI,EAAC,EAAE,QAAQ,EAAE,IAAI,EAAE,CAAC;;mCACf;kBALC,OAAO;IADnB,IAAA,iBAAM,GAAE;GACI,OAAO,CAMnB;AAEY,QAAA,aAAa,GAAG,wBAAa,CAAC,cAAc,CAAC,OAAO,CAAC,CAAA"}

package/dist/export.schema.d.ts

@@ -0,0 +1,6 @@
+import { Document, Schema as MongooseSchema, Types } from 'mongoose';
+export type ExportDocument = Export & Document;
+export declare class Export {
+    assembly: Types.ObjectId;
+}
+export declare const ExportSchema: MongooseSchema<Export, import("mongoose").Model<Export, any, any, any, any>, {}, {}, {}, {}, import("mongoose").DefaultSchemaOptions, Export>;

package/dist/export.schema.js

@@ -0,0 +1,24 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.ExportSchema = exports.Export = void 0;
+const tslib_1 = require("tslib");
+const mongoose_1 = require("@nestjs/mongoose");
+const mongoose_2 = require("mongoose");
+let Export = class Export {
+    assembly;
+};
+exports.Export = Export;
+tslib_1.__decorate([
+    (0, mongoose_1.Prop)({
+        type: mongoose_2.Schema.Types.ObjectId,
+        ref: 'Assembly',
+        required: true,
+    }),
+    tslib_1.__metadata("design:type", mongoose_2.Types.ObjectId)
+], Export.prototype, "assembly", void 0);
+exports.Export = Export = tslib_1.__decorate([
+    (0, mongoose_1.Schema)({ timestamps: true })
+], Export);
+exports.ExportSchema = mongoose_1.SchemaFactory.createForClass(Export);
+exports.ExportSchema.index({ createdAt: 1 }, { expireAfterSeconds: 300 });
+//# sourceMappingURL=export.schema.js.map

package/dist/export.schema.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"export.schema.js","sourceRoot":"","sources":["../src/export.schema.ts"],"names":[],"mappings":";;;;AAAA,+CAA8D;AAC9D,uCAAoE;AAK7D,IAAM,MAAM,GAAZ,MAAM,MAAM;IAMjB,QAAQ,CAAgB;CACzB,CAAA;AAPY,wBAAM;AAMjB;IALC,IAAA,eAAI,EAAC;QACJ,IAAI,EAAE,iBAAc,CAAC,KAAK,CAAC,QAAQ;QACnC,GAAG,EAAE,UAAU;QACf,QAAQ,EAAE,IAAI;KACf,CAAC;sCACQ,gBAAK,CAAC,QAAQ;wCAAA;iBANb,MAAM;IADlB,IAAA,iBAAM,EAAC,EAAE,UAAU,EAAE,IAAI,EAAE,CAAC;GAChB,MAAM,CAOlB;AAEY,QAAA,YAAY,GAAG,wBAAa,CAAC,cAAc,CAAC,MAAM,CAAC,CAAA;AAEhE,oBAAY,CAAC,KAAK,CAAC,EAAE,SAAS,EAAE,CAAC,EAAE,EAAE,EAAE,kBAAkB,EAAE,GAAG,EAAE,CAAC,CAAA"}

package/dist/feature.schema.d.ts

@@ -0,0 +1,20 @@
+import type { AnnotationFeatureSnapshot } from '@apollo-annotation/mst';
+import { HydratedDocument, Schema as MongooseSchema, Types } from 'mongoose';
+export interface FeatureDocument extends HydratedDocument<Feature> {
+    createdAt?: Date;
+    updatedAt?: Date;
+}
+export declare class Feature implements Omit<AnnotationFeatureSnapshot, '_id' | 'children' | 'refSeq'> {
+    _id: Types.ObjectId;
+    refSeq: Types.ObjectId;
+    allIds: string[];
+    type: string;
+    min: number;
+    max: number;
+    strand?: 1 | -1;
+    attributes?: Record<string, string[]>;
+    children?: Map<string, Feature>;
+    status: number;
+    user: string;
+}
+export declare const FeatureSchema: MongooseSchema<Feature, import("mongoose").Model<Feature, any, any, any, any>, {}, {}, {}, {}, import("mongoose").DefaultSchemaOptions, Feature>;

package/dist/feature.schema.js

@@ -0,0 +1,73 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.FeatureSchema = exports.Feature = void 0;
+const tslib_1 = require("tslib");
+const mongoose_1 = require("@nestjs/mongoose");
+const mongoose_2 = require("mongoose");
+let Feature = class Feature {
+    // Don't make this a @Prop since _id is already on a MongoDB document
+    _id;
+    refSeq;
+    allIds;
+    type;
+    min;
+    max;
+    strand;
+    attributes;
+    // This is not a @Prop because it needs to be a recursive reference to the
+    // schema, which is done with Schema.add below
+    children;
+    status;
+    user;
+};
+exports.Feature = Feature;
+tslib_1.__decorate([
+    (0, mongoose_1.Prop)({
+        required: true,
+        index: true,
+        type: mongoose_2.Schema.Types.ObjectId,
+        ref: 'RefSeq',
+    }),
+    tslib_1.__metadata("design:type", mongoose_2.Types.ObjectId)
+], Feature.prototype, "refSeq", void 0);
+tslib_1.__decorate([
+    (0, mongoose_1.Prop)({ type: [String], required: true, index: true }),
+    tslib_1.__metadata("design:type", Array)
+], Feature.prototype, "allIds", void 0);
+tslib_1.__decorate([
+    (0, mongoose_1.Prop)({ required: true }),
+    tslib_1.__metadata("design:type", String)
+], Feature.prototype, "type", void 0);
+tslib_1.__decorate([
+    (0, mongoose_1.Prop)({ required: true }),
+    tslib_1.__metadata("design:type", Number)
+], Feature.prototype, "min", void 0);
+tslib_1.__decorate([
+    (0, mongoose_1.Prop)({ required: true }),
+    tslib_1.__metadata("design:type", Number)
+], Feature.prototype, "max", void 0);
+tslib_1.__decorate([
+    (0, mongoose_1.Prop)(),
+    tslib_1.__metadata("design:type", Number)
+], Feature.prototype, "strand", void 0);
+tslib_1.__decorate([
+    (0, mongoose_1.Prop)({ type: Map, of: [String] }),
+    tslib_1.__metadata("design:type", Object)
+], Feature.prototype, "attributes", void 0);
+tslib_1.__decorate([
+    (0, mongoose_1.Prop)(),
+    tslib_1.__metadata("design:type", Number)
+], Feature.prototype, "status", void 0);
+tslib_1.__decorate([
+    (0, mongoose_1.Prop)(),
+    tslib_1.__metadata("design:type", String)
+], Feature.prototype, "user", void 0);
+exports.Feature = Feature = tslib_1.__decorate([
+    (0, mongoose_1.Schema)({ timestamps: true })
+], Feature);
+exports.FeatureSchema = mongoose_1.SchemaFactory.createForClass(Feature);
+exports.FeatureSchema.add({ children: { type: Map, of: exports.FeatureSchema } });
+exports.FeatureSchema.index({ refSeq: 1, min: 1 });
+exports.FeatureSchema.index({ refSeq: 1, max: 1 });
+exports.FeatureSchema.index({ '$**': 'text' });
+//# sourceMappingURL=feature.schema.js.map

package/dist/feature.schema.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"feature.schema.js","sourceRoot":"","sources":["../src/feature.schema.ts"],"names":[],"mappings":";;;;AACA,+CAA8D;AAC9D,uCAA4E;AAQrE,IAAM,OAAO,GAAb,MAAM,OAAO;IAGlB,qEAAqE;IACrE,GAAG,CAAgB;IAQnB,MAAM,CAAgB;IAGtB,MAAM,CAAU;IAGhB,IAAI,CAAQ;IAGZ,GAAG,CAAQ;IAGX,GAAG,CAAQ;IAGX,MAAM,CAAS;IAGf,UAAU,CAA2B;IAErC,0EAA0E;IAC1E,8CAA8C;IAC9C,QAAQ,CAAuB;IAG/B,MAAM,CAAQ;IAGd,IAAI,CAAQ;CACb,CAAA;AAzCY,0BAAO;AAYlB;IANC,IAAA,eAAI,EAAC;QACJ,QAAQ,EAAE,IAAI;QACd,KAAK,EAAE,IAAI;QACX,IAAI,EAAE,iBAAc,CAAC,KAAK,CAAC,QAAQ;QACnC,GAAG,EAAE,QAAQ;KACd,CAAC;sCACM,gBAAK,CAAC,QAAQ;uCAAA;AAGtB;IADC,IAAA,eAAI,EAAC,EAAE,IAAI,EAAE,CAAC,MAAM,CAAC,EAAE,QAAQ,EAAE,IAAI,EAAE,KAAK,EAAE,IAAI,EAAE,CAAC;;uCACtC;AAGhB;IADC,IAAA,eAAI,EAAC,EAAE,QAAQ,EAAE,IAAI,EAAE,CAAC;;qCACb;AAGZ;IADC,IAAA,eAAI,EAAC,EAAE,QAAQ,EAAE,IAAI,EAAE,CAAC;;oCACd;AAGX;IADC,IAAA,eAAI,EAAC,EAAE,QAAQ,EAAE,IAAI,EAAE,CAAC;;oCACd;AAGX;IADC,IAAA,eAAI,GAAE;;uCACQ;AAGf;IADC,IAAA,eAAI,EAAC,EAAE,IAAI,EAAE,GAAG,EAAE,EAAE,EAAE,CAAC,MAAM,CAAC,EAAE,CAAC;;2CACG;AAOrC;IADC,IAAA,eAAI,GAAE;;uCACO;AAGd;IADC,IAAA,eAAI,GAAE;;qCACK;kBAxCD,OAAO;IADnB,IAAA,iBAAM,EAAC,EAAE,UAAU,EAAE,IAAI,EAAE,CAAC;GAChB,OAAO,CAyCnB;AACY,QAAA,aAAa,GAAG,wBAAa,CAAC,cAAc,CAAC,OAAO,CAAC,CAAA;AAElE,qBAAa,CAAC,GAAG,CAAC,EAAE,QAAQ,EAAE,EAAE,IAAI,EAAE,GAAG,EAAE,EAAE,EAAE,qBAAa,EAAE,EAAE,CAAC,CAAA;AAEjE,qBAAa,CAAC,KAAK,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,GAAG,EAAE,CAAC,EAAE,CAAC,CAAA;AAC1C,qBAAa,CAAC,KAAK,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,GAAG,EAAE,CAAC,EAAE,CAAC,CAAA;AAC1C,qBAAa,CAAC,KAAK,CAAC,EAAE,KAAK,EAAE,MAAM,EAAE,CAAC,CAAA"}

package/dist/file.schema.d.ts

@@ -0,0 +1,8 @@
+import { Document } from 'mongoose';
+export type FileDocument = File & Document;
+export declare class File {
+    basename: string;
+    checksum: string;
+    type: 'text/x-gff3' | 'text/x-fasta' | 'application/x-bgzip-fasta' | 'text/x-fai' | 'application/x-gzi';
+}
+export declare const FileSchema: import("mongoose").Schema<File, import("mongoose").Model<File, any, any, any, any>, {}, {}, {}, {}, import("mongoose").DefaultSchemaOptions, File>;

package/dist/file.schema.js

@@ -0,0 +1,37 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.FileSchema = exports.File = void 0;
+const tslib_1 = require("tslib");
+const mongoose_1 = require("@nestjs/mongoose");
+let File = class File {
+    basename;
+    checksum;
+    type;
+};
+exports.File = File;
+tslib_1.__decorate([
+    (0, mongoose_1.Prop)({ required: true }),
+    tslib_1.__metadata("design:type", String)
+], File.prototype, "basename", void 0);
+tslib_1.__decorate([
+    (0, mongoose_1.Prop)({ required: true }),
+    tslib_1.__metadata("design:type", String)
+], File.prototype, "checksum", void 0);
+tslib_1.__decorate([
+    (0, mongoose_1.Prop)({
+        required: true,
+        enum: [
+            'text/x-gff3',
+            'text/x-fasta',
+            'application/x-bgzip-fasta',
+            'text/x-fai',
+            'application/x-gzi',
+        ],
+    }),
+    tslib_1.__metadata("design:type", String)
+], File.prototype, "type", void 0);
+exports.File = File = tslib_1.__decorate([
+    (0, mongoose_1.Schema)()
+], File);
+exports.FileSchema = mongoose_1.SchemaFactory.createForClass(File);
+//# sourceMappingURL=file.schema.js.map

package/dist/file.schema.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"file.schema.js","sourceRoot":"","sources":["../src/file.schema.ts"],"names":[],"mappings":";;;;AAAA,+CAA8D;AAMvD,IAAM,IAAI,GAAV,MAAM,IAAI;IAEf,QAAQ,CAAQ;IAGhB,QAAQ,CAAQ;IAYhB,IAAI,CAKmB;CACxB,CAAA;AAvBY,oBAAI;AAEf;IADC,IAAA,eAAI,EAAC,EAAE,QAAQ,EAAE,IAAI,EAAE,CAAC;;sCACT;AAGhB;IADC,IAAA,eAAI,EAAC,EAAE,QAAQ,EAAE,IAAI,EAAE,CAAC;;sCACT;AAYhB;IAVC,IAAA,eAAI,EAAC;QACJ,QAAQ,EAAE,IAAI;QACd,IAAI,EAAE;YACJ,aAAa;YACb,cAAc;YACd,2BAA2B;YAC3B,YAAY;YACZ,mBAAmB;SACpB;KACF,CAAC;;kCAMqB;eAtBZ,IAAI;IADhB,IAAA,iBAAM,GAAE;GACI,IAAI,CAuBhB;AAEY,QAAA,UAAU,GAAG,wBAAa,CAAC,cAAc,CAAC,IAAI,CAAC,CAAA"}

package/dist/index.d.ts

@@ -0,0 +1,12 @@
+export * from './assembly.schema';
+export * from './change.schema';
+export * from './check.schema';
+export * from './checkResult.schema';
+export * from './counter.schema';
+export * from './export.schema';
+export * from './feature.schema';
+export * from './file.schema';
+export * from './refSeq.schema';
+export * from './refSeqChunk.schema';
+export * from './user.schema';
+export * from './jbrowseConfig.schema';

package/dist/index.js

@@ -0,0 +1,16 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+const tslib_1 = require("tslib");
+tslib_1.__exportStar(require("./assembly.schema"), exports);
+tslib_1.__exportStar(require("./change.schema"), exports);
+tslib_1.__exportStar(require("./check.schema"), exports);
+tslib_1.__exportStar(require("./checkResult.schema"), exports);
+tslib_1.__exportStar(require("./counter.schema"), exports);
+tslib_1.__exportStar(require("./export.schema"), exports);
+tslib_1.__exportStar(require("./feature.schema"), exports);
+tslib_1.__exportStar(require("./file.schema"), exports);
+tslib_1.__exportStar(require("./refSeq.schema"), exports);
+tslib_1.__exportStar(require("./refSeqChunk.schema"), exports);
+tslib_1.__exportStar(require("./user.schema"), exports);
+tslib_1.__exportStar(require("./jbrowseConfig.schema"), exports);
+//# sourceMappingURL=index.js.map

package/dist/index.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":";;;AAAA,4DAAiC;AACjC,0DAA+B;AAC/B,yDAA8B;AAC9B,+DAAoC;AACpC,2DAAgC;AAChC,0DAA+B;AAC/B,2DAAgC;AAChC,wDAA6B;AAC7B,0DAA+B;AAC/B,+DAAoC;AACpC,wDAA6B;AAC7B,iEAAsC"}

package/dist/jbrowseConfig.schema.d.ts

@@ -0,0 +1,5 @@
+import { Document } from 'mongoose';
+export type JBrowseConfigDocument = JBrowseConfig & Document;
+export declare class JBrowseConfig {
+}
+export declare const JBrowseConfigSchema: import("mongoose").Schema<JBrowseConfig, import("mongoose").Model<JBrowseConfig, any, any, any, any>, {}, {}, {}, {}, import("mongoose").DefaultSchemaOptions, JBrowseConfig>;

package/dist/jbrowseConfig.schema.js

@@ -0,0 +1,13 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.JBrowseConfigSchema = exports.JBrowseConfig = void 0;
+const tslib_1 = require("tslib");
+const mongoose_1 = require("@nestjs/mongoose");
+let JBrowseConfig = class JBrowseConfig {
+};
+exports.JBrowseConfig = JBrowseConfig;
+exports.JBrowseConfig = JBrowseConfig = tslib_1.__decorate([
+    (0, mongoose_1.Schema)({ strict: false })
+], JBrowseConfig);
+exports.JBrowseConfigSchema = mongoose_1.SchemaFactory.createForClass(JBrowseConfig);
+//# sourceMappingURL=jbrowseConfig.schema.js.map

package/dist/jbrowseConfig.schema.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"jbrowseConfig.schema.js","sourceRoot":"","sources":["../src/jbrowseConfig.schema.ts"],"names":[],"mappings":";;;;AAAA,+CAAwD;AAMjD,IAAM,aAAa,GAAnB,MAAM,aAAa;CAAG,CAAA;AAAhB,sCAAa;wBAAb,aAAa;IADzB,IAAA,iBAAM,EAAC,EAAE,MAAM,EAAE,KAAK,EAAE,CAAC;GACb,aAAa,CAAG;AAEhB,QAAA,mBAAmB,GAAG,wBAAa,CAAC,cAAc,CAAC,aAAa,CAAC,CAAA"}

package/dist/refSeq.schema.d.ts

@@ -0,0 +1,15 @@
+import { Document, Schema as MongooseSchema, Types } from 'mongoose';
+import { Assembly } from './assembly.schema';
+export type RefSeqDocument = RefSeq & Document;
+export declare class RefSeq {
+    _id: Types.ObjectId;
+    assembly: Assembly;
+    name: string;
+    description: string;
+    aliases: string[];
+    length: number;
+    chunkSize: number;
+    status: number;
+    user: string;
+}
+export declare const RefSeqSchema: MongooseSchema<RefSeq, import("mongoose").Model<RefSeq, any, any, any, any>, {}, {}, {}, {}, import("mongoose").DefaultSchemaOptions, RefSeq>;