@apollo-annotation/schemas 0.1.17 → 0.1.19

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@apollo-annotation/schemas",
-  "version": "0.1.17",
+  "version": "0.1.19",
   "main": "./dist/index.js",
   "scripts": {
     "build": "tsc"
@@ -16,9 +16,9 @@
     "tslib": "^2.3.1"
   },
   "devDependencies": {
-    "@apollo-annotation/mst": "^0.1.17",
+    "@apollo-annotation/mst": "^0.1.19",
     "@types/node": "^18.14.2",
-    "typescript": "^5.1.6"
+    "typescript": "^5.5.3"
   },
   "publishConfig": {
     "access": "public"

package/src/feature.schema.ts

@@ -14,10 +14,6 @@ export class Feature
   // Don't make this a @Prop since _id is already on a MongoDB document
   _id: Types.ObjectId
 
-  // Here we store feature ID if it's given in attributes, otherwise gffId = _id as string
-  @Prop()
-  gffId: string
-
   @Prop({
     required: true,
     index: true,
@@ -33,23 +29,14 @@ export class Feature
   type: string
 
   @Prop({ required: true })
-  start: number
+  min: number
 
   @Prop({ required: true })
-  end: number
-
-  @Prop()
-  discontinuousLocations?: { start: number; end: number; phase?: 0 | 1 | 2 }[]
+  max: number
 
   @Prop()
   strand?: 1 | -1
 
-  @Prop()
-  score?: number
-
-  @Prop()
-  phase?: 0 | 1 | 2
-
   @Prop({ type: Map, of: [String] })
   attributes?: Record<string, string[]>
 
@@ -67,6 +54,6 @@ export const FeatureSchema = SchemaFactory.createForClass(Feature)
 
 FeatureSchema.add({ children: { type: Map, of: FeatureSchema } })
 
-FeatureSchema.index({ refSeq: 1, start: 1 })
-FeatureSchema.index({ refSeq: 1, end: 1 })
+FeatureSchema.index({ refSeq: 1, min: 1 })
+FeatureSchema.index({ refSeq: 1, max: 1 })
 FeatureSchema.index({ '$**': 'text' })

package/src/index.ts

@@ -9,3 +9,4 @@ export * from './file.schema'
 export * from './refSeq.schema'
 export * from './refSeqChunk.schema'
 export * from './user.schema'
+export * from './jbrowseConfig.schema'

package/src/jbrowseConfig.schema.ts

@@ -0,0 +1,9 @@
+import { Schema, SchemaFactory } from '@nestjs/mongoose'
+import { Document } from 'mongoose'
+
+export type JBrowseConfigDocument = JBrowseConfig & Document
+
+@Schema({ strict: false })
+export class JBrowseConfig {}
+
+export const JBrowseConfigSchema = SchemaFactory.createForClass(JBrowseConfig)

package/src/refSeq.schema.ts

@@ -24,6 +24,9 @@ export class RefSeq {
   @Prop()
   description: string
 
+  @Prop()
+  aliases: string[]
+
   @Prop({ required: true })
   length: number