@apollo-annotation/mst 0.3.11 → 0.3.13

package/dist/ApolloAssembly.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"ApolloAssembly.d.ts","sourceRoot":"","sources":["../src/ApolloAssembly.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,KAAK,QAAQ,EAAE,KAAK,UAAU,EAAS,MAAM,0BAA0B,CAAA;AAIhF,MAAM,MAAM,iBAAiB,GACzB,2BAA2B,GAC3B,oBAAoB,GACpB,mBAAmB,CAAA;AAEvB,eAAO,MAAM,cAAc;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;sBAmCw5V,CAAC;wBAAuB,CAAC;;;;;;;;;;;;;;;;;;;;;;;;0BApBl7V,MAAM;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;sBAoBm5V,CAAC;wBAAuB,CAAC;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;sBAAzB,CAAC;wBAAuB,CAAC;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;sBAAzB,CAAC;wBAAuB,CAAC;;;;;;;;;;;;;;;;;;;;;;kBAf17V,MAAM,QAAQ,MAAM,gBAAgB,MAAM;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;sBAeu3V,CAAC;wBAAuB,CAAC;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;sBAAzB,CAAC;wBAAuB,CAAC;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;sBAAzB,CAAC;wBAAuB,CAAC;;;;;;;;;;;;;;;;;;;;;wBAZp7V,MAAM;wGAGzB,CAAA;AAKL,MAAM,WAAW,eAAgB,SAAQ,QAAQ,CAAC,OAAO,cAAc,CAAC;CAAG;AAE3E,MAAM,WAAW,sBACf,SAAQ,UAAU,CAAC,OAAO,cAAc,CAAC;CAAG"}

package/dist/ApolloAssembly.js

@@ -1,14 +1,11 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.ApolloAssembly = void 0;
-const mobx_state_tree_1 = require("mobx-state-tree");
-const ApolloRefSeq_1 = require("./ApolloRefSeq");
-exports.ApolloAssembly = mobx_state_tree_1.types
+import { types } from '@jbrowse/mobx-state-tree';
+import { ApolloRefSeq } from './ApolloRefSeq.js';
+export const ApolloAssembly = types
     .model('ApolloAssembly', {
-    _id: mobx_state_tree_1.types.identifier,
-    refSeqs: mobx_state_tree_1.types.map(ApolloRefSeq_1.ApolloRefSeq),
-    comments: mobx_state_tree_1.types.array(mobx_state_tree_1.types.string),
-    backendDriverType: mobx_state_tree_1.types.optional(mobx_state_tree_1.types.enumeration('backendDriverType', [
+    _id: types.identifier,
+    refSeqs: types.map(ApolloRefSeq),
+    comments: types.array(types.string),
+    backendDriverType: types.optional(types.enumeration('backendDriverType', [
         'CollaborationServerDriver',
         'InMemoryFileDriver',
         'DesktopFileDriver',

package/dist/ApolloAssembly.js.map

@@ -1 +1 @@
-{"version":3,"file":"ApolloAssembly.js","sourceRoot":"","sources":["../src/ApolloAssembly.ts"],"names":[],"mappings":";;;AAAA,qDAAuE;AAEvE,iDAA6C;AAOhC,QAAA,cAAc,GAAG,uBAAK;KAChC,KAAK,CAAC,gBAAgB,EAAE;IACvB,GAAG,EAAE,uBAAK,CAAC,UAAU;IACrB,OAAO,EAAE,uBAAK,CAAC,GAAG,CAAC,2BAAY,CAAC;IAChC,QAAQ,EAAE,uBAAK,CAAC,KAAK,CAAC,uBAAK,CAAC,MAAM,CAAC;IACnC,iBAAiB,EAAE,uBAAK,CAAC,QAAQ,CAC/B,uBAAK,CAAC,WAAW,CAAC,mBAAmB,EAAE;QACrC,2BAA2B;QAC3B,oBAAoB;QACpB,mBAAmB;KACpB,CAAC,EACF,2BAA2B,CAC5B;CACF,CAAC;KACD,KAAK,CAAC,CAAC,IAAI,EAAE,EAAE,CAAC,CAAC;IAChB,YAAY,CAAC,OAAe;QAC1B,OAAO,CAAC,GAAG,IAAI,CAAC,OAAO,CAAC,MAAM,EAAE,CAAC,CAAC,IAAI,CAAC,CAAC,GAAG,EAAE,EAAE,CAAC,GAAG,CAAC,IAAI,KAAK,OAAO,CAAC,CAAA;IACvE,CAAC;CACF,CAAC,CAAC;KACF,OAAO,CAAC,CAAC,IAAI,EAAE,EAAE,CAAC,CAAC;IAClB,SAAS,CAAC,EAAU,EAAE,IAAY,EAAE,WAAoB;QACtD,OAAO,IAAI,CAAC,OAAO,CAAC,GAAG,CAAC,EAAE,GAAG,EAAE,EAAE,EAAE,IAAI,EAAE,WAAW,EAAE,CAAC,CAAA;IACzD,CAAC;IACD,UAAU,CAAC,OAAe;QACxB,OAAO,IAAI,CAAC,QAAQ,CAAC,IAAI,CAAC,OAAO,CAAC,CAAA;IACpC,CAAC;CACF,CAAC,CAAC,CAAA"}
+{"version":3,"file":"ApolloAssembly.js","sourceRoot":"","sources":["../src/ApolloAssembly.ts"],"names":[],"mappings":"AAAA,OAAO,EAAkC,KAAK,EAAE,MAAM,0BAA0B,CAAA;AAEhF,OAAO,EAAE,YAAY,EAAE,MAAM,mBAAmB,CAAA;AAOhD,MAAM,CAAC,MAAM,cAAc,GAAG,KAAK;KAChC,KAAK,CAAC,gBAAgB,EAAE;IACvB,GAAG,EAAE,KAAK,CAAC,UAAU;IACrB,OAAO,EAAE,KAAK,CAAC,GAAG,CAAC,YAAY,CAAC;IAChC,QAAQ,EAAE,KAAK,CAAC,KAAK,CAAC,KAAK,CAAC,MAAM,CAAC;IACnC,iBAAiB,EAAE,KAAK,CAAC,QAAQ,CAC/B,KAAK,CAAC,WAAW,CAAC,mBAAmB,EAAE;QACrC,2BAA2B;QAC3B,oBAAoB;QACpB,mBAAmB;KACpB,CAAC,EACF,2BAA2B,CAC5B;CACF,CAAC;KACD,KAAK,CAAC,CAAC,IAAI,EAAE,EAAE,CAAC,CAAC;IAChB,YAAY,CAAC,OAAe;QAC1B,OAAO,CAAC,GAAG,IAAI,CAAC,OAAO,CAAC,MAAM,EAAE,CAAC,CAAC,IAAI,CAAC,CAAC,GAAG,EAAE,EAAE,CAAC,GAAG,CAAC,IAAI,KAAK,OAAO,CAAC,CAAA;IACvE,CAAC;CACF,CAAC,CAAC;KACF,OAAO,CAAC,CAAC,IAAI,EAAE,EAAE,CAAC,CAAC;IAClB,SAAS,CAAC,EAAU,EAAE,IAAY,EAAE,WAAoB;QACtD,OAAO,IAAI,CAAC,OAAO,CAAC,GAAG,CAAC,EAAE,GAAG,EAAE,EAAE,EAAE,IAAI,EAAE,WAAW,EAAE,CAAC,CAAA;IACzD,CAAC;IACD,UAAU,CAAC,OAAe;QACxB,OAAO,IAAI,CAAC,QAAQ,CAAC,IAAI,CAAC,OAAO,CAAC,CAAA;IACpC,CAAC;CACF,CAAC,CAAC,CAAA"}

package/dist/ApolloRefSeq.d.ts

@@ -1,33 +1,33 @@
-import { type Instance, type SnapshotIn, type SnapshotOrInstance } from 'mobx-state-tree';
-import { type AnnotationFeature, type AnnotationFeatureSnapshot } from './AnnotationFeatureModel';
-export declare const Sequence: import("mobx-state-tree").IModelType<{
-    start: import("mobx-state-tree").ISimpleType<number>;
-    stop: import("mobx-state-tree").ISimpleType<number>;
-    sequence: import("mobx-state-tree").ISimpleType<string>;
-}, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
-export declare const ApolloRefSeq: import("mobx-state-tree").IModelType<{
-    _id: import("mobx-state-tree").ISimpleType<string>;
-    name: import("mobx-state-tree").ISimpleType<string>;
-    description: import("mobx-state-tree").IType<string | undefined, string, string>;
-    features: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
-        _id: import("mobx-state-tree").ISimpleType<string>;
-        refSeq: import("mobx-state-tree").ISimpleType<string>;
-        type: import("mobx-state-tree").ISimpleType<string>;
-        min: import("mobx-state-tree").ISimpleType<number>;
-        max: import("mobx-state-tree").ISimpleType<number>;
-        strand: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ITypeUnion<1 | -1, 1 | -1, 1 | -1>>;
-        children: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IMapType<import("mobx-state-tree").IAnyModelType>>;
-        attributes: import("mobx-state-tree").IMapType<import("mobx-state-tree").IArrayType<import("mobx-state-tree").ISimpleType<string>>>;
+import { type Instance, type SnapshotIn, type SnapshotOrInstance } from '@jbrowse/mobx-state-tree';
+import { type AnnotationFeature, type AnnotationFeatureSnapshot } from './AnnotationFeatureModel.js';
+export declare const Sequence: import("@jbrowse/mobx-state-tree").IModelType<{
+    start: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+    stop: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+    sequence: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+}, {}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>;
+export declare const ApolloRefSeq: import("@jbrowse/mobx-state-tree").IModelType<{
+    _id: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+    name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+    description: import("@jbrowse/mobx-state-tree").IType<string | undefined, string, string>;
+    features: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
+        _id: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+        refSeq: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+        type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+        min: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+        max: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+        strand: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ITypeUnion<1 | -1, 1 | -1, 1 | -1>>;
+        children: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IAnyModelType>>;
+        attributes: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>;
     }, {
         readonly length: number;
-        readonly featureId: (import("mobx-state-tree").IMSTArray<import("mobx-state-tree").ISimpleType<string>> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").ISimpleType<string>>>) | undefined;
+        readonly featureId: (import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").ISimpleType<string>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>) | undefined;
         readonly minWithChildren: number;
         readonly maxWithChildren: number;
         hasDescendant(featureId: string): boolean;
-        readonly transcriptExonParts: import("./AnnotationFeatureModel").TranscriptPart[];
-        readonly transcriptParts: import("./AnnotationFeatureModel").TranscriptPart[][];
+        readonly transcriptExonParts: import("./AnnotationFeatureModel.js").TranscriptPart[];
+        readonly transcriptParts: import("./AnnotationFeatureModel.js").TranscriptPart[][];
     } & {
-        readonly cdsLocations: import("./AnnotationFeatureModel").TranscriptPartCoding[][];
+        readonly cdsLocations: import("./AnnotationFeatureModel.js").TranscriptPartCoding[][];
         readonly looksLikeGene: boolean;
     } & {
         setAttributes(attributes: Map<string, string[]>): void;
@@ -45,18 +45,18 @@ export declare const ApolloRefSeq: import("mobx-state-tree").IModelType<{
             min: number;
             max: number;
             strand?: 1 | -1;
-            children?: SnapshotOrInstance<(import("mobx-state-tree").IMSTMap<import("mobx-state-tree").IAnyModelType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IMaybe<import("mobx-state-tree").IMapType<import("mobx-state-tree").IAnyModelType>>>) | undefined>;
+            children?: SnapshotOrInstance<(import("@jbrowse/mobx-state-tree").IMSTMap<import("@jbrowse/mobx-state-tree").IAnyModelType> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IAnyModelType>>>) | undefined>;
         }): void;
     } & {
         readonly parent: AnnotationFeature | undefined;
         readonly topLevelFeature: AnnotationFeature;
         readonly assemblyId: string;
-    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-    sequence: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
-        start: import("mobx-state-tree").ISimpleType<number>;
-        stop: import("mobx-state-tree").ISimpleType<number>;
-        sequence: import("mobx-state-tree").ISimpleType<string>;
-    }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
+    }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+    sequence: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IModelType<{
+        start: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+        stop: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+        sequence: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+    }, {}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
 }, {
     addFeature(feature: AnnotationFeatureSnapshot): void;
     deleteFeature(featureId: string): boolean;
@@ -65,8 +65,9 @@ export declare const ApolloRefSeq: import("mobx-state-tree").IModelType<{
 } & {
     getSequence(start: number, stop: number): string;
     getFeatures(min: number, max: number): AnnotationFeature[];
-}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
+}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>;
 export interface ApolloRefSeqI extends Instance<typeof ApolloRefSeq> {
 }
 export interface ApolloRefSeqSnapshot extends SnapshotIn<typeof ApolloRefSeq> {
 }
+//# sourceMappingURL=ApolloRefSeq.d.ts.map

package/dist/ApolloRefSeq.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"ApolloRefSeq.d.ts","sourceRoot":"","sources":["../src/ApolloRefSeq.ts"],"names":[],"mappings":"AACA,OAAO,EACL,KAAK,QAAQ,EACb,KAAK,UAAU,EACf,KAAK,kBAAkB,EAExB,MAAM,0BAA0B,CAAA;AAEjC,OAAO,EACL,KAAK,iBAAiB,EAEtB,KAAK,yBAAyB,EAC/B,MAAM,6BAA6B,CAAA;AAEpC,eAAO,MAAM,QAAQ;;;;4GAInB,CAAA;AAQF,eAAO,MAAM,YAAY;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;kBAsH2oQ,CAAC;oBAAuB,CAAC;;;;;;;;;;;;;wBA7GrqQ,yBAAyB;6BAGpB,MAAM;gCAGH,MAAM;qBAGjB,kBAAkB,CAAC,OAAO,QAAQ,CAAC;;uBAsEjC,MAAM,QAAQ,MAAM,GAAG,MAAM;qBAa/B,MAAM,OAAO,MAAM,GAAG,iBAAiB,EAAE;wGASzD,CAAA;AAKL,MAAM,WAAW,aAAc,SAAQ,QAAQ,CAAC,OAAO,YAAY,CAAC;CAAG;AAEvE,MAAM,WAAW,oBAAqB,SAAQ,UAAU,CAAC,OAAO,YAAY,CAAC;CAAG"}

package/dist/ApolloRefSeq.js

@@ -1,21 +1,18 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.ApolloRefSeq = exports.Sequence = void 0;
-const util_1 = require("@jbrowse/core/util");
-const mobx_state_tree_1 = require("mobx-state-tree");
-const AnnotationFeatureModel_1 = require("./AnnotationFeatureModel");
-exports.Sequence = mobx_state_tree_1.types.model({
-    start: mobx_state_tree_1.types.number,
-    stop: mobx_state_tree_1.types.number,
-    sequence: mobx_state_tree_1.types.string,
+import { doesIntersect2, isContainedWithin } from '@jbrowse/core/util';
+import { types, } from '@jbrowse/mobx-state-tree';
+import { AnnotationFeatureModel, } from './AnnotationFeatureModel.js';
+export const Sequence = types.model({
+    start: types.number,
+    stop: types.number,
+    sequence: types.string,
 });
-exports.ApolloRefSeq = mobx_state_tree_1.types
+export const ApolloRefSeq = types
     .model('ApolloRefSeq', {
-    _id: mobx_state_tree_1.types.identifier,
-    name: mobx_state_tree_1.types.string,
+    _id: types.identifier,
+    name: types.string,
     description: '',
-    features: mobx_state_tree_1.types.map(AnnotationFeatureModel_1.AnnotationFeatureModel),
-    sequence: mobx_state_tree_1.types.array(exports.Sequence),
+    features: types.map(AnnotationFeatureModel),
+    sequence: types.array(Sequence),
 })
     .actions((self) => ({
     addFeature(feature) {
@@ -75,7 +72,7 @@ exports.ApolloRefSeq = mobx_state_tree_1.types
             }
         }
         if (self.sequence.length === consolidatedSequences.length &&
-            self.sequence.every((s, idx) => s.start === consolidatedSequences[idx].start &&
+            self.sequence.every((s, idx) => s.start === consolidatedSequences[idx]?.start &&
                 s.stop === consolidatedSequences[idx].stop)) {
             // sequences was unchanged
             return;
@@ -88,7 +85,7 @@ exports.ApolloRefSeq = mobx_state_tree_1.types
     getSequence(start, stop) {
         for (const { sequence, start: seqStart, stop: seqStop, } of self.sequence) {
             // adjacent to existing sequence - modify
-            if ((0, util_1.isContainedWithin)(start, stop, seqStart, seqStop)) {
+            if (isContainedWithin(start, stop, seqStart, seqStop)) {
                 return sequence.slice(start - seqStart, stop - seqStart);
             }
         }
@@ -97,7 +94,7 @@ exports.ApolloRefSeq = mobx_state_tree_1.types
     getFeatures(min, max) {
         const features = [];
         for (const [, feature] of self.features) {
-            if ((0, util_1.doesIntersect2)(feature.min, feature.max, min, max)) {
+            if (doesIntersect2(feature.min, feature.max, min, max)) {
                 features.push(feature);
             }
         }

package/dist/ApolloRefSeq.js.map

@@ -1 +1 @@
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package/dist/CheckResult.d.ts

@@ -1,27 +1,27 @@
-import { type Instance, type SnapshotIn } from 'mobx-state-tree';
-export declare const CheckResult: import("mobx-state-tree").IModelType<{
-    _id: import("mobx-state-tree").ISimpleType<string>;
-    name: import("mobx-state-tree").ISimpleType<string>;
-    cause: import("mobx-state-tree").ISimpleType<string>;
-    ids: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IModelType<{
-        _id: import("mobx-state-tree").ISimpleType<string>;
-        refSeq: import("mobx-state-tree").ISimpleType<string>;
-        type: import("mobx-state-tree").ISimpleType<string>;
-        min: import("mobx-state-tree").ISimpleType<number>;
-        max: import("mobx-state-tree").ISimpleType<number>;
-        strand: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ITypeUnion<1 | -1, 1 | -1, 1 | -1>>;
-        children: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IMapType<import("mobx-state-tree").IAnyModelType>>;
-        attributes: import("mobx-state-tree").IMapType<import("mobx-state-tree").IArrayType<import("mobx-state-tree").ISimpleType<string>>>;
+import { type Instance, type SnapshotIn } from '@jbrowse/mobx-state-tree';
+export declare const CheckResult: import("@jbrowse/mobx-state-tree").IModelType<{
+    _id: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+    name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+    cause: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+    ids: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IReferenceType<import("@jbrowse/mobx-state-tree").IModelType<{
+        _id: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+        refSeq: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+        type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+        min: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+        max: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+        strand: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ITypeUnion<1 | -1, 1 | -1, 1 | -1>>;
+        children: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IAnyModelType>>;
+        attributes: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>;
     }, {
         readonly length: number;
-        readonly featureId: (import("mobx-state-tree").IMSTArray<import("mobx-state-tree").ISimpleType<string>> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").ISimpleType<string>>>) | undefined;
+        readonly featureId: (import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").ISimpleType<string>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>) | undefined;
         readonly minWithChildren: number;
         readonly maxWithChildren: number;
         hasDescendant(featureId: string): boolean;
-        readonly transcriptExonParts: import("./AnnotationFeatureModel").TranscriptPart[];
-        readonly transcriptParts: import("./AnnotationFeatureModel").TranscriptPart[][];
+        readonly transcriptExonParts: import("./AnnotationFeatureModel.js").TranscriptPart[];
+        readonly transcriptParts: import("./AnnotationFeatureModel.js").TranscriptPart[][];
     } & {
-        readonly cdsLocations: import("./AnnotationFeatureModel").TranscriptPartCoding[][];
+        readonly cdsLocations: import("./AnnotationFeatureModel.js").TranscriptPartCoding[][];
         readonly looksLikeGene: boolean;
     } & {
         setAttributes(attributes: Map<string, string[]>): void;
@@ -31,7 +31,7 @@ export declare const CheckResult: import("mobx-state-tree").IModelType<{
         setMin(min: number): void;
         setMax(max: number): void;
         setStrand(strand?: 1 | -1): void;
-        addChild(childFeature: import("./AnnotationFeatureModel").AnnotationFeatureSnapshot): void;
+        addChild(childFeature: import("./AnnotationFeatureModel.js").AnnotationFeatureSnapshot): void;
         deleteChild(childFeatureId: string): void;
     } & {
         update({ children, max, min, refSeq, strand, }: {
@@ -39,21 +39,22 @@ export declare const CheckResult: import("mobx-state-tree").IModelType<{
             min: number;
             max: number;
             strand?: 1 | -1;
-            children?: import("mobx-state-tree").SnapshotOrInstance<(import("mobx-state-tree").IMSTMap<import("mobx-state-tree").IAnyModelType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IMaybe<import("mobx-state-tree").IMapType<import("mobx-state-tree").IAnyModelType>>>) | undefined>;
+            children?: import("@jbrowse/mobx-state-tree").SnapshotOrInstance<(import("@jbrowse/mobx-state-tree").IMSTMap<import("@jbrowse/mobx-state-tree").IAnyModelType> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IAnyModelType>>>) | undefined>;
         }): void;
     } & {
-        readonly parent: import("./AnnotationFeatureModel").AnnotationFeature | undefined;
-        readonly topLevelFeature: import("./AnnotationFeatureModel").AnnotationFeature;
+        readonly parent: import("./AnnotationFeatureModel.js").AnnotationFeature | undefined;
+        readonly topLevelFeature: import("./AnnotationFeatureModel.js").AnnotationFeature;
         readonly assemblyId: string;
-    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>>;
-    refSeq: import("mobx-state-tree").ISimpleType<string>;
-    start: import("mobx-state-tree").ISimpleType<number>;
-    end: import("mobx-state-tree").ISimpleType<number>;
-    ignored: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-    message: import("mobx-state-tree").ISimpleType<string>;
-}, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
+    }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>>>;
+    refSeq: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+    start: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+    end: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
+    ignored: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+    message: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+}, {}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>;
 export interface CheckResultI extends Instance<typeof CheckResult> {
 }
 export interface CheckResultSnapshot extends SnapshotIn<typeof CheckResult> {
 }
 export type CheckResultIdsType = Instance<typeof CheckResult>['ids'];
+//# sourceMappingURL=CheckResult.d.ts.map

package/dist/CheckResult.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"CheckResult.d.ts","sourceRoot":"","sources":["../src/CheckResult.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,KAAK,QAAQ,EAAE,KAAK,UAAU,EAAS,MAAM,0BAA0B,CAAA;AAIhF,eAAO,MAAM,WAAW;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;kBAoBk7W,CAAC;oBAAuB,CAAC;;;;;;;;;;;;4GAVj+W,CAAA;AAKF,MAAM,WAAW,YAAa,SAAQ,QAAQ,CAAC,OAAO,WAAW,CAAC;CAAG;AAErE,MAAM,WAAW,mBAAoB,SAAQ,UAAU,CAAC,OAAO,WAAW,CAAC;CAAG;AAE9E,MAAM,MAAM,kBAAkB,GAAG,QAAQ,CAAC,OAAO,WAAW,CAAC,CAAC,KAAK,CAAC,CAAA"}

package/dist/CheckResult.js

@@ -1,17 +1,14 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.CheckResult = void 0;
-const mobx_state_tree_1 = require("mobx-state-tree");
-const AnnotationFeatureModel_1 = require("./AnnotationFeatureModel");
-exports.CheckResult = mobx_state_tree_1.types.model('CheckResult', {
-    _id: mobx_state_tree_1.types.identifier,
-    name: mobx_state_tree_1.types.string,
-    cause: mobx_state_tree_1.types.string,
-    ids: mobx_state_tree_1.types.array(mobx_state_tree_1.types.safeReference(AnnotationFeatureModel_1.AnnotationFeatureModel)),
-    refSeq: mobx_state_tree_1.types.string,
-    start: mobx_state_tree_1.types.number,
-    end: mobx_state_tree_1.types.number,
+import { types } from '@jbrowse/mobx-state-tree';
+import { AnnotationFeatureModel } from './AnnotationFeatureModel.js';
+export const CheckResult = types.model('CheckResult', {
+    _id: types.identifier,
+    name: types.string,
+    cause: types.string,
+    ids: types.array(types.safeReference(AnnotationFeatureModel)),
+    refSeq: types.string,
+    start: types.number,
+    end: types.number,
     ignored: false,
-    message: mobx_state_tree_1.types.string,
+    message: types.string,
 });
 //# sourceMappingURL=CheckResult.js.map

package/dist/CheckResult.js.map

@@ -1 +1 @@
-{"version":3,"file":"CheckResult.js","sourceRoot":"","sources":["../src/CheckResult.ts"],"names":[],"mappings":";;;AAAA,qDAAuE;AAEvE,qEAAiE;AAEpD,QAAA,WAAW,GAAG,uBAAK,CAAC,KAAK,CAAC,aAAa,EAAE;IACpD,GAAG,EAAE,uBAAK,CAAC,UAAU;IACrB,IAAI,EAAE,uBAAK,CAAC,MAAM;IAClB,KAAK,EAAE,uBAAK,CAAC,MAAM;IACnB,GAAG,EAAE,uBAAK,CAAC,KAAK,CAAC,uBAAK,CAAC,aAAa,CAAC,+CAAsB,CAAC,CAAC;IAC7D,MAAM,EAAE,uBAAK,CAAC,MAAM;IACpB,KAAK,EAAE,uBAAK,CAAC,MAAM;IACnB,GAAG,EAAE,uBAAK,CAAC,MAAM;IACjB,OAAO,EAAE,KAAK;IACd,OAAO,EAAE,uBAAK,CAAC,MAAM;CACtB,CAAC,CAAA"}
+{"version":3,"file":"CheckResult.js","sourceRoot":"","sources":["../src/CheckResult.ts"],"names":[],"mappings":"AAAA,OAAO,EAAkC,KAAK,EAAE,MAAM,0BAA0B,CAAA;AAEhF,OAAO,EAAE,sBAAsB,EAAE,MAAM,6BAA6B,CAAA;AAEpE,MAAM,CAAC,MAAM,WAAW,GAAG,KAAK,CAAC,KAAK,CAAC,aAAa,EAAE;IACpD,GAAG,EAAE,KAAK,CAAC,UAAU;IACrB,IAAI,EAAE,KAAK,CAAC,MAAM;IAClB,KAAK,EAAE,KAAK,CAAC,MAAM;IACnB,GAAG,EAAE,KAAK,CAAC,KAAK,CAAC,KAAK,CAAC,aAAa,CAAC,sBAAsB,CAAC,CAAC;IAC7D,MAAM,EAAE,KAAK,CAAC,MAAM;IACpB,KAAK,EAAE,KAAK,CAAC,MAAM;IACnB,GAAG,EAAE,KAAK,CAAC,MAAM;IACjB,OAAO,EAAE,KAAK;IACd,OAAO,EAAE,KAAK,CAAC,MAAM;CACtB,CAAC,CAAA"}

package/dist/index.d.ts

@@ -1,4 +1,5 @@
-export * from './AnnotationFeatureModel';
-export * from './ApolloAssembly';
-export * from './ApolloRefSeq';
-export * from './CheckResult';
+export * from './AnnotationFeatureModel.js';
+export * from './ApolloAssembly.js';
+export * from './ApolloRefSeq.js';
+export * from './CheckResult.js';
+//# sourceMappingURL=index.d.ts.map

package/dist/index.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA,cAAc,6BAA6B,CAAA;AAC3C,cAAc,qBAAqB,CAAA;AACnC,cAAc,mBAAmB,CAAA;AACjC,cAAc,kBAAkB,CAAA"}

package/dist/index.js

@@ -1,8 +1,5 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-const tslib_1 = require("tslib");
-tslib_1.__exportStar(require("./AnnotationFeatureModel"), exports);
-tslib_1.__exportStar(require("./ApolloAssembly"), exports);
-tslib_1.__exportStar(require("./ApolloRefSeq"), exports);
-tslib_1.__exportStar(require("./CheckResult"), exports);
+export * from './AnnotationFeatureModel.js';
+export * from './ApolloAssembly.js';
+export * from './ApolloRefSeq.js';
+export * from './CheckResult.js';
 //# sourceMappingURL=index.js.map

package/dist/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":";;;AAAA,mEAAwC;AACxC,2DAAgC;AAChC,yDAA8B;AAC9B,wDAA6B"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA,cAAc,6BAA6B,CAAA;AAC3C,cAAc,qBAAqB,CAAA;AACnC,cAAc,mBAAmB,CAAA;AACjC,cAAc,kBAAkB,CAAA"}