@apollo-annotation/mst 0.3.10 → 0.3.12

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (28) hide show
  1. package/dist/AnnotationFeatureModel.d.ts +14 -13
  2. package/dist/AnnotationFeatureModel.d.ts.map +1 -0
  3. package/dist/AnnotationFeatureModel.js +23 -26
  4. package/dist/AnnotationFeatureModel.js.map +1 -1
  5. package/dist/ApolloAssembly.d.ts +196 -195
  6. package/dist/ApolloAssembly.d.ts.map +1 -0
  7. package/dist/ApolloAssembly.js +7 -10
  8. package/dist/ApolloAssembly.js.map +1 -1
  9. package/dist/ApolloRefSeq.d.ts +33 -32
  10. package/dist/ApolloRefSeq.d.ts.map +1 -0
  11. package/dist/ApolloRefSeq.js +15 -18
  12. package/dist/ApolloRefSeq.js.map +1 -1
  13. package/dist/CheckResult.d.ts +30 -29
  14. package/dist/CheckResult.d.ts.map +1 -0
  15. package/dist/CheckResult.js +11 -14
  16. package/dist/CheckResult.js.map +1 -1
  17. package/dist/index.d.ts +5 -4
  18. package/dist/index.d.ts.map +1 -0
  19. package/dist/index.js +4 -7
  20. package/dist/index.js.map +1 -1
  21. package/dist/tsconfig.tsbuildinfo +1 -1
  22. package/package.json +6 -4
  23. package/src/AnnotationFeatureModel.ts +2 -2
  24. package/src/ApolloAssembly.ts +2 -2
  25. package/src/ApolloRefSeq.ts +3 -3
  26. package/src/CheckResult.ts +2 -2
  27. package/src/index.ts +4 -4
  28. package/tsconfig.json +1 -7
package/dist/ApolloAssembly.d.ts CHANGED
@@ -1,30 +1,30 @@
1
- import { type Instance, type SnapshotIn } from 'mobx-state-tree';
1
+ import { type Instance, type SnapshotIn } from '@jbrowse/mobx-state-tree';
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  export type BackendDriverType = 'CollaborationServerDriver' | 'InMemoryFileDriver' | 'DesktopFileDriver';
3
- export declare const ApolloAssembly: import("mobx-state-tree").IModelType<{
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- _id: import("mobx-state-tree").ISimpleType<string>;
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- refSeqs: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
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- _id: import("mobx-state-tree").ISimpleType<string>;
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- name: import("mobx-state-tree").ISimpleType<string>;
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- description: import("mobx-state-tree").IType<string | undefined, string, string>;
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- features: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
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- _id: import("mobx-state-tree").ISimpleType<string>;
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- refSeq: import("mobx-state-tree").ISimpleType<string>;
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- type: import("mobx-state-tree").ISimpleType<string>;
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- min: import("mobx-state-tree").ISimpleType<number>;
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- max: import("mobx-state-tree").ISimpleType<number>;
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- strand: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ITypeUnion<1 | -1, 1 | -1, 1 | -1>>;
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- children: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IMapType<import("mobx-state-tree").IAnyModelType>>;
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- attributes: import("mobx-state-tree").IMapType<import("mobx-state-tree").IArrayType<import("mobx-state-tree").ISimpleType<string>>>;
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+ export declare const ApolloAssembly: import("@jbrowse/mobx-state-tree").IModelType<{
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+ _id: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
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+ refSeqs: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
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+ _id: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
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+ name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
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+ description: import("@jbrowse/mobx-state-tree").IType<string | undefined, string, string>;
9
+ features: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
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+ _id: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
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+ refSeq: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
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+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
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+ min: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
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+ max: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
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+ strand: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ITypeUnion<1 | -1, 1 | -1, 1 | -1>>;
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+ children: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IAnyModelType>>;
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+ attributes: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>;
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  }, {
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  readonly length: number;
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- readonly featureId: (import("mobx-state-tree").IMSTArray<import("mobx-state-tree").ISimpleType<string>> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").ISimpleType<string>>>) | undefined;
20
+ readonly featureId: (import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").ISimpleType<string>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>) | undefined;
21
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  readonly minWithChildren: number;
22
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  readonly maxWithChildren: number;
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  hasDescendant(featureId: string): boolean;
24
- readonly transcriptExonParts: import("./AnnotationFeatureModel").TranscriptPart[];
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- readonly transcriptParts: import("./AnnotationFeatureModel").TranscriptPart[][];
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+ readonly transcriptExonParts: import("./AnnotationFeatureModel.js").TranscriptPart[];
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+ readonly transcriptParts: import("./AnnotationFeatureModel.js").TranscriptPart[][];
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  } & {
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- readonly cdsLocations: import("./AnnotationFeatureModel").TranscriptPartCoding[][];
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+ readonly cdsLocations: import("./AnnotationFeatureModel.js").TranscriptPartCoding[][];
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  readonly looksLikeGene: boolean;
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  } & {
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  setAttributes(attributes: Map<string, string[]>): void;
@@ -34,7 +34,7 @@ export declare const ApolloAssembly: import("mobx-state-tree").IModelType<{
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  setMin(min: number): void;
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  setMax(max: number): void;
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  setStrand(strand?: 1 | -1): void;
37
- addChild(childFeature: import("./AnnotationFeatureModel").AnnotationFeatureSnapshot): void;
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+ addChild(childFeature: import("./AnnotationFeatureModel.js").AnnotationFeatureSnapshot): void;
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  deleteChild(childFeatureId: string): void;
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  } & {
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  update({ children, max, min, refSeq, strand, }: {
@@ -42,53 +42,53 @@ export declare const ApolloAssembly: import("mobx-state-tree").IModelType<{
42
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  min: number;
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  max: number;
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  strand?: 1 | -1;
45
- children?: import("mobx-state-tree").SnapshotOrInstance<(import("mobx-state-tree").IMSTMap<import("mobx-state-tree").IAnyModelType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IMaybe<import("mobx-state-tree").IMapType<import("mobx-state-tree").IAnyModelType>>>) | undefined>;
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+ children?: import("@jbrowse/mobx-state-tree").SnapshotOrInstance<(import("@jbrowse/mobx-state-tree").IMSTMap<import("@jbrowse/mobx-state-tree").IAnyModelType> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IAnyModelType>>>) | undefined>;
46
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  }): void;
47
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  } & {
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- readonly parent: import("./AnnotationFeatureModel").AnnotationFeature | undefined;
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- readonly topLevelFeature: import("./AnnotationFeatureModel").AnnotationFeature;
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+ readonly parent: import("./AnnotationFeatureModel.js").AnnotationFeature | undefined;
49
+ readonly topLevelFeature: import("./AnnotationFeatureModel.js").AnnotationFeature;
50
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  readonly assemblyId: string;
51
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
52
- sequence: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
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- start: import("mobx-state-tree").ISimpleType<number>;
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- stop: import("mobx-state-tree").ISimpleType<number>;
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- sequence: import("mobx-state-tree").ISimpleType<string>;
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- }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
52
+ sequence: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IModelType<{
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+ start: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
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+ stop: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
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+ sequence: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
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+ }, {}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
57
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  }, {
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- addFeature(feature: import("./AnnotationFeatureModel").AnnotationFeatureSnapshot): void;
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+ addFeature(feature: import("./AnnotationFeatureModel.js").AnnotationFeatureSnapshot): void;
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  deleteFeature(featureId: string): boolean;
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  setDescription(description: string): void;
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- addSequence(seq: import("mobx-state-tree").SnapshotOrInstance<typeof import("./ApolloRefSeq").Sequence>): void;
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+ addSequence(seq: import("@jbrowse/mobx-state-tree").SnapshotOrInstance<typeof import("./ApolloRefSeq.js").Sequence>): void;
62
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  } & {
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  getSequence(start: number, stop: number): string;
64
- getFeatures(min: number, max: number): import("./AnnotationFeatureModel").AnnotationFeature[];
65
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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- comments: import("mobx-state-tree").IArrayType<import("mobx-state-tree").ISimpleType<string>>;
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- backendDriverType: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
64
+ getFeatures(min: number, max: number): import("./AnnotationFeatureModel.js").AnnotationFeature[];
65
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
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+ comments: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
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+ backendDriverType: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
68
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  }, {
69
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  getByRefName(refName: string): ({
70
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  _id: string;
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  name: string;
72
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  description: string;
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- features: import("mobx-state-tree").IMSTMap<import("mobx-state-tree").IModelType<{
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- _id: import("mobx-state-tree").ISimpleType<string>;
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- refSeq: import("mobx-state-tree").ISimpleType<string>;
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- type: import("mobx-state-tree").ISimpleType<string>;
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- min: import("mobx-state-tree").ISimpleType<number>;
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- max: import("mobx-state-tree").ISimpleType<number>;
79
- strand: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ITypeUnion<1 | -1, 1 | -1, 1 | -1>>;
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- children: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IMapType<import("mobx-state-tree").IAnyModelType>>;
81
- attributes: import("mobx-state-tree").IMapType<import("mobx-state-tree").IArrayType<import("mobx-state-tree").ISimpleType<string>>>;
73
+ features: import("@jbrowse/mobx-state-tree").IMSTMap<import("@jbrowse/mobx-state-tree").IModelType<{
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+ _id: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
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+ refSeq: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
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+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
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+ min: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
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+ max: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
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+ strand: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ITypeUnion<1 | -1, 1 | -1, 1 | -1>>;
80
+ children: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IAnyModelType>>;
81
+ attributes: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>;
82
82
  }, {
83
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  readonly length: number;
84
- readonly featureId: (import("mobx-state-tree").IMSTArray<import("mobx-state-tree").ISimpleType<string>> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").ISimpleType<string>>>) | undefined;
84
+ readonly featureId: (import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").ISimpleType<string>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>) | undefined;
85
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  readonly minWithChildren: number;
86
86
  readonly maxWithChildren: number;
87
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  hasDescendant(featureId: string): boolean;
88
- readonly transcriptExonParts: import("./AnnotationFeatureModel").TranscriptPart[];
89
- readonly transcriptParts: import("./AnnotationFeatureModel").TranscriptPart[][];
88
+ readonly transcriptExonParts: import("./AnnotationFeatureModel.js").TranscriptPart[];
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+ readonly transcriptParts: import("./AnnotationFeatureModel.js").TranscriptPart[][];
90
90
  } & {
91
- readonly cdsLocations: import("./AnnotationFeatureModel").TranscriptPartCoding[][];
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+ readonly cdsLocations: import("./AnnotationFeatureModel.js").TranscriptPartCoding[][];
92
92
  readonly looksLikeGene: boolean;
93
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  } & {
94
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  setAttributes(attributes: Map<string, string[]>): void;
@@ -98,7 +98,7 @@ export declare const ApolloAssembly: import("mobx-state-tree").IModelType<{
98
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  setMin(min: number): void;
99
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  setMax(max: number): void;
100
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  setStrand(strand?: 1 | -1): void;
101
- addChild(childFeature: import("./AnnotationFeatureModel").AnnotationFeatureSnapshot): void;
101
+ addChild(childFeature: import("./AnnotationFeatureModel.js").AnnotationFeatureSnapshot): void;
102
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  deleteChild(childFeatureId: string): void;
103
103
  } & {
104
104
  update({ children, max, min, refSeq, strand, }: {
@@ -106,31 +106,31 @@ export declare const ApolloAssembly: import("mobx-state-tree").IModelType<{
106
106
  min: number;
107
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  max: number;
108
108
  strand?: 1 | -1;
109
- children?: import("mobx-state-tree").SnapshotOrInstance<(import("mobx-state-tree").IMSTMap<import("mobx-state-tree").IAnyModelType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IMaybe<import("mobx-state-tree").IMapType<import("mobx-state-tree").IAnyModelType>>>) | undefined>;
109
+ children?: import("@jbrowse/mobx-state-tree").SnapshotOrInstance<(import("@jbrowse/mobx-state-tree").IMSTMap<import("@jbrowse/mobx-state-tree").IAnyModelType> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IAnyModelType>>>) | undefined>;
110
110
  }): void;
111
111
  } & {
112
- readonly parent: import("./AnnotationFeatureModel").AnnotationFeature | undefined;
113
- readonly topLevelFeature: import("./AnnotationFeatureModel").AnnotationFeature;
112
+ readonly parent: import("./AnnotationFeatureModel.js").AnnotationFeature | undefined;
113
+ readonly topLevelFeature: import("./AnnotationFeatureModel.js").AnnotationFeature;
114
114
  readonly assemblyId: string;
115
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
116
- _id: import("mobx-state-tree").ISimpleType<string>;
117
- refSeq: import("mobx-state-tree").ISimpleType<string>;
118
- type: import("mobx-state-tree").ISimpleType<string>;
119
- min: import("mobx-state-tree").ISimpleType<number>;
120
- max: import("mobx-state-tree").ISimpleType<number>;
121
- strand: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ITypeUnion<1 | -1, 1 | -1, 1 | -1>>;
122
- children: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IMapType<import("mobx-state-tree").IAnyModelType>>;
123
- attributes: import("mobx-state-tree").IMapType<import("mobx-state-tree").IArrayType<import("mobx-state-tree").ISimpleType<string>>>;
115
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
116
+ _id: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
117
+ refSeq: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
118
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
119
+ min: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
120
+ max: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
121
+ strand: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ITypeUnion<1 | -1, 1 | -1, 1 | -1>>;
122
+ children: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IAnyModelType>>;
123
+ attributes: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>;
124
124
  }, {
125
125
  readonly length: number;
126
- readonly featureId: (import("mobx-state-tree").IMSTArray<import("mobx-state-tree").ISimpleType<string>> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").ISimpleType<string>>>) | undefined;
126
+ readonly featureId: (import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").ISimpleType<string>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>) | undefined;
127
127
  readonly minWithChildren: number;
128
128
  readonly maxWithChildren: number;
129
129
  hasDescendant(featureId: string): boolean;
130
- readonly transcriptExonParts: import("./AnnotationFeatureModel").TranscriptPart[];
131
- readonly transcriptParts: import("./AnnotationFeatureModel").TranscriptPart[][];
130
+ readonly transcriptExonParts: import("./AnnotationFeatureModel.js").TranscriptPart[];
131
+ readonly transcriptParts: import("./AnnotationFeatureModel.js").TranscriptPart[][];
132
132
  } & {
133
- readonly cdsLocations: import("./AnnotationFeatureModel").TranscriptPartCoding[][];
133
+ readonly cdsLocations: import("./AnnotationFeatureModel.js").TranscriptPartCoding[][];
134
134
  readonly looksLikeGene: boolean;
135
135
  } & {
136
136
  setAttributes(attributes: Map<string, string[]>): void;
@@ -140,7 +140,7 @@ export declare const ApolloAssembly: import("mobx-state-tree").IModelType<{
140
140
  setMin(min: number): void;
141
141
  setMax(max: number): void;
142
142
  setStrand(strand?: 1 | -1): void;
143
- addChild(childFeature: import("./AnnotationFeatureModel").AnnotationFeatureSnapshot): void;
143
+ addChild(childFeature: import("./AnnotationFeatureModel.js").AnnotationFeatureSnapshot): void;
144
144
  deleteChild(childFeatureId: string): void;
145
145
  } & {
146
146
  update({ children, max, min, refSeq, strand, }: {
@@ -148,53 +148,53 @@ export declare const ApolloAssembly: import("mobx-state-tree").IModelType<{
148
148
  min: number;
149
149
  max: number;
150
150
  strand?: 1 | -1;
151
- children?: import("mobx-state-tree").SnapshotOrInstance<(import("mobx-state-tree").IMSTMap<import("mobx-state-tree").IAnyModelType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IMaybe<import("mobx-state-tree").IMapType<import("mobx-state-tree").IAnyModelType>>>) | undefined>;
151
+ children?: import("@jbrowse/mobx-state-tree").SnapshotOrInstance<(import("@jbrowse/mobx-state-tree").IMSTMap<import("@jbrowse/mobx-state-tree").IAnyModelType> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IAnyModelType>>>) | undefined>;
152
152
  }): void;
153
153
  } & {
154
- readonly parent: import("./AnnotationFeatureModel").AnnotationFeature | undefined;
155
- readonly topLevelFeature: import("./AnnotationFeatureModel").AnnotationFeature;
154
+ readonly parent: import("./AnnotationFeatureModel.js").AnnotationFeature | undefined;
155
+ readonly topLevelFeature: import("./AnnotationFeatureModel.js").AnnotationFeature;
156
156
  readonly assemblyId: string;
157
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
158
- sequence: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IModelType<{
159
- start: import("mobx-state-tree").ISimpleType<number>;
160
- stop: import("mobx-state-tree").ISimpleType<number>;
161
- sequence: import("mobx-state-tree").ISimpleType<string>;
162
- }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
163
- start: import("mobx-state-tree").ISimpleType<number>;
164
- stop: import("mobx-state-tree").ISimpleType<number>;
165
- sequence: import("mobx-state-tree").ISimpleType<string>;
166
- }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
167
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
168
- addFeature(feature: import("./AnnotationFeatureModel").AnnotationFeatureSnapshot): void;
157
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>>;
158
+ sequence: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IModelType<{
159
+ start: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
160
+ stop: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
161
+ sequence: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
162
+ }, {}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IModelType<{
163
+ start: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
164
+ stop: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
165
+ sequence: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
166
+ }, {}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>>;
167
+ } & import("@jbrowse/mobx-state-tree/dist/internal.js").NonEmptyObject & {
168
+ addFeature(feature: import("./AnnotationFeatureModel.js").AnnotationFeatureSnapshot): void;
169
169
  deleteFeature(featureId: string): boolean;
170
170
  setDescription(description: string): void;
171
- addSequence(seq: import("mobx-state-tree").SnapshotOrInstance<typeof import("./ApolloRefSeq").Sequence>): void;
171
+ addSequence(seq: import("@jbrowse/mobx-state-tree").SnapshotOrInstance<typeof import("./ApolloRefSeq.js").Sequence>): void;
172
172
  } & {
173
173
  getSequence(start: number, stop: number): string;
174
- getFeatures(min: number, max: number): import("./AnnotationFeatureModel").AnnotationFeature[];
175
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
176
- _id: import("mobx-state-tree").ISimpleType<string>;
177
- name: import("mobx-state-tree").ISimpleType<string>;
178
- description: import("mobx-state-tree").IType<string | undefined, string, string>;
179
- features: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
180
- _id: import("mobx-state-tree").ISimpleType<string>;
181
- refSeq: import("mobx-state-tree").ISimpleType<string>;
182
- type: import("mobx-state-tree").ISimpleType<string>;
183
- min: import("mobx-state-tree").ISimpleType<number>;
184
- max: import("mobx-state-tree").ISimpleType<number>;
185
- strand: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ITypeUnion<1 | -1, 1 | -1, 1 | -1>>;
186
- children: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IMapType<import("mobx-state-tree").IAnyModelType>>;
187
- attributes: import("mobx-state-tree").IMapType<import("mobx-state-tree").IArrayType<import("mobx-state-tree").ISimpleType<string>>>;
174
+ getFeatures(min: number, max: number): import("./AnnotationFeatureModel.js").AnnotationFeature[];
175
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
176
+ _id: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
177
+ name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
178
+ description: import("@jbrowse/mobx-state-tree").IType<string | undefined, string, string>;
179
+ features: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
180
+ _id: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
181
+ refSeq: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
182
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
183
+ min: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
184
+ max: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
185
+ strand: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ITypeUnion<1 | -1, 1 | -1, 1 | -1>>;
186
+ children: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IAnyModelType>>;
187
+ attributes: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>;
188
188
  }, {
189
189
  readonly length: number;
190
- readonly featureId: (import("mobx-state-tree").IMSTArray<import("mobx-state-tree").ISimpleType<string>> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").ISimpleType<string>>>) | undefined;
190
+ readonly featureId: (import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").ISimpleType<string>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>) | undefined;
191
191
  readonly minWithChildren: number;
192
192
  readonly maxWithChildren: number;
193
193
  hasDescendant(featureId: string): boolean;
194
- readonly transcriptExonParts: import("./AnnotationFeatureModel").TranscriptPart[];
195
- readonly transcriptParts: import("./AnnotationFeatureModel").TranscriptPart[][];
194
+ readonly transcriptExonParts: import("./AnnotationFeatureModel.js").TranscriptPart[];
195
+ readonly transcriptParts: import("./AnnotationFeatureModel.js").TranscriptPart[][];
196
196
  } & {
197
- readonly cdsLocations: import("./AnnotationFeatureModel").TranscriptPartCoding[][];
197
+ readonly cdsLocations: import("./AnnotationFeatureModel.js").TranscriptPartCoding[][];
198
198
  readonly looksLikeGene: boolean;
199
199
  } & {
200
200
  setAttributes(attributes: Map<string, string[]>): void;
@@ -204,7 +204,7 @@ export declare const ApolloAssembly: import("mobx-state-tree").IModelType<{
204
204
  setMin(min: number): void;
205
205
  setMax(max: number): void;
206
206
  setStrand(strand?: 1 | -1): void;
207
- addChild(childFeature: import("./AnnotationFeatureModel").AnnotationFeatureSnapshot): void;
207
+ addChild(childFeature: import("./AnnotationFeatureModel.js").AnnotationFeatureSnapshot): void;
208
208
  deleteChild(childFeatureId: string): void;
209
209
  } & {
210
210
  update({ children, max, min, refSeq, strand, }: {
@@ -212,51 +212,51 @@ export declare const ApolloAssembly: import("mobx-state-tree").IModelType<{
212
212
  min: number;
213
213
  max: number;
214
214
  strand?: 1 | -1;
215
- children?: import("mobx-state-tree").SnapshotOrInstance<(import("mobx-state-tree").IMSTMap<import("mobx-state-tree").IAnyModelType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IMaybe<import("mobx-state-tree").IMapType<import("mobx-state-tree").IAnyModelType>>>) | undefined>;
215
+ children?: import("@jbrowse/mobx-state-tree").SnapshotOrInstance<(import("@jbrowse/mobx-state-tree").IMSTMap<import("@jbrowse/mobx-state-tree").IAnyModelType> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IAnyModelType>>>) | undefined>;
216
216
  }): void;
217
217
  } & {
218
- readonly parent: import("./AnnotationFeatureModel").AnnotationFeature | undefined;
219
- readonly topLevelFeature: import("./AnnotationFeatureModel").AnnotationFeature;
218
+ readonly parent: import("./AnnotationFeatureModel.js").AnnotationFeature | undefined;
219
+ readonly topLevelFeature: import("./AnnotationFeatureModel.js").AnnotationFeature;
220
220
  readonly assemblyId: string;
221
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
222
- sequence: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
223
- start: import("mobx-state-tree").ISimpleType<number>;
224
- stop: import("mobx-state-tree").ISimpleType<number>;
225
- sequence: import("mobx-state-tree").ISimpleType<string>;
226
- }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
221
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
222
+ sequence: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IModelType<{
223
+ start: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
224
+ stop: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
225
+ sequence: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
226
+ }, {}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
227
227
  }, {
228
- addFeature(feature: import("./AnnotationFeatureModel").AnnotationFeatureSnapshot): void;
228
+ addFeature(feature: import("./AnnotationFeatureModel.js").AnnotationFeatureSnapshot): void;
229
229
  deleteFeature(featureId: string): boolean;
230
230
  setDescription(description: string): void;
231
- addSequence(seq: import("mobx-state-tree").SnapshotOrInstance<typeof import("./ApolloRefSeq").Sequence>): void;
231
+ addSequence(seq: import("@jbrowse/mobx-state-tree").SnapshotOrInstance<typeof import("./ApolloRefSeq.js").Sequence>): void;
232
232
  } & {
233
233
  getSequence(start: number, stop: number): string;
234
- getFeatures(min: number, max: number): import("./AnnotationFeatureModel").AnnotationFeature[];
235
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
234
+ getFeatures(min: number, max: number): import("./AnnotationFeatureModel.js").AnnotationFeature[];
235
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>) | undefined;
236
236
  } & {
237
237
  addRefSeq(id: string, name: string, description?: string): {
238
238
  _id: string;
239
239
  name: string;
240
240
  description: string;
241
- features: import("mobx-state-tree").IMSTMap<import("mobx-state-tree").IModelType<{
242
- _id: import("mobx-state-tree").ISimpleType<string>;
243
- refSeq: import("mobx-state-tree").ISimpleType<string>;
244
- type: import("mobx-state-tree").ISimpleType<string>;
245
- min: import("mobx-state-tree").ISimpleType<number>;
246
- max: import("mobx-state-tree").ISimpleType<number>;
247
- strand: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ITypeUnion<1 | -1, 1 | -1, 1 | -1>>;
248
- children: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IMapType<import("mobx-state-tree").IAnyModelType>>;
249
- attributes: import("mobx-state-tree").IMapType<import("mobx-state-tree").IArrayType<import("mobx-state-tree").ISimpleType<string>>>;
241
+ features: import("@jbrowse/mobx-state-tree").IMSTMap<import("@jbrowse/mobx-state-tree").IModelType<{
242
+ _id: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
243
+ refSeq: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
244
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
245
+ min: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
246
+ max: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
247
+ strand: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ITypeUnion<1 | -1, 1 | -1, 1 | -1>>;
248
+ children: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IAnyModelType>>;
249
+ attributes: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>;
250
250
  }, {
251
251
  readonly length: number;
252
- readonly featureId: (import("mobx-state-tree").IMSTArray<import("mobx-state-tree").ISimpleType<string>> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").ISimpleType<string>>>) | undefined;
252
+ readonly featureId: (import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").ISimpleType<string>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>) | undefined;
253
253
  readonly minWithChildren: number;
254
254
  readonly maxWithChildren: number;
255
255
  hasDescendant(featureId: string): boolean;
256
- readonly transcriptExonParts: import("./AnnotationFeatureModel").TranscriptPart[];
257
- readonly transcriptParts: import("./AnnotationFeatureModel").TranscriptPart[][];
256
+ readonly transcriptExonParts: import("./AnnotationFeatureModel.js").TranscriptPart[];
257
+ readonly transcriptParts: import("./AnnotationFeatureModel.js").TranscriptPart[][];
258
258
  } & {
259
- readonly cdsLocations: import("./AnnotationFeatureModel").TranscriptPartCoding[][];
259
+ readonly cdsLocations: import("./AnnotationFeatureModel.js").TranscriptPartCoding[][];
260
260
  readonly looksLikeGene: boolean;
261
261
  } & {
262
262
  setAttributes(attributes: Map<string, string[]>): void;
@@ -266,7 +266,7 @@ export declare const ApolloAssembly: import("mobx-state-tree").IModelType<{
266
266
  setMin(min: number): void;
267
267
  setMax(max: number): void;
268
268
  setStrand(strand?: 1 | -1): void;
269
- addChild(childFeature: import("./AnnotationFeatureModel").AnnotationFeatureSnapshot): void;
269
+ addChild(childFeature: import("./AnnotationFeatureModel.js").AnnotationFeatureSnapshot): void;
270
270
  deleteChild(childFeatureId: string): void;
271
271
  } & {
272
272
  update({ children, max, min, refSeq, strand, }: {
@@ -274,31 +274,31 @@ export declare const ApolloAssembly: import("mobx-state-tree").IModelType<{
274
274
  min: number;
275
275
  max: number;
276
276
  strand?: 1 | -1;
277
- children?: import("mobx-state-tree").SnapshotOrInstance<(import("mobx-state-tree").IMSTMap<import("mobx-state-tree").IAnyModelType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IMaybe<import("mobx-state-tree").IMapType<import("mobx-state-tree").IAnyModelType>>>) | undefined>;
277
+ children?: import("@jbrowse/mobx-state-tree").SnapshotOrInstance<(import("@jbrowse/mobx-state-tree").IMSTMap<import("@jbrowse/mobx-state-tree").IAnyModelType> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IAnyModelType>>>) | undefined>;
278
278
  }): void;
279
279
  } & {
280
- readonly parent: import("./AnnotationFeatureModel").AnnotationFeature | undefined;
281
- readonly topLevelFeature: import("./AnnotationFeatureModel").AnnotationFeature;
280
+ readonly parent: import("./AnnotationFeatureModel.js").AnnotationFeature | undefined;
281
+ readonly topLevelFeature: import("./AnnotationFeatureModel.js").AnnotationFeature;
282
282
  readonly assemblyId: string;
283
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
284
- _id: import("mobx-state-tree").ISimpleType<string>;
285
- refSeq: import("mobx-state-tree").ISimpleType<string>;
286
- type: import("mobx-state-tree").ISimpleType<string>;
287
- min: import("mobx-state-tree").ISimpleType<number>;
288
- max: import("mobx-state-tree").ISimpleType<number>;
289
- strand: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ITypeUnion<1 | -1, 1 | -1, 1 | -1>>;
290
- children: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IMapType<import("mobx-state-tree").IAnyModelType>>;
291
- attributes: import("mobx-state-tree").IMapType<import("mobx-state-tree").IArrayType<import("mobx-state-tree").ISimpleType<string>>>;
283
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
284
+ _id: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
285
+ refSeq: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
286
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
287
+ min: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
288
+ max: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
289
+ strand: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ITypeUnion<1 | -1, 1 | -1, 1 | -1>>;
290
+ children: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IAnyModelType>>;
291
+ attributes: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>;
292
292
  }, {
293
293
  readonly length: number;
294
- readonly featureId: (import("mobx-state-tree").IMSTArray<import("mobx-state-tree").ISimpleType<string>> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").ISimpleType<string>>>) | undefined;
294
+ readonly featureId: (import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").ISimpleType<string>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>) | undefined;
295
295
  readonly minWithChildren: number;
296
296
  readonly maxWithChildren: number;
297
297
  hasDescendant(featureId: string): boolean;
298
- readonly transcriptExonParts: import("./AnnotationFeatureModel").TranscriptPart[];
299
- readonly transcriptParts: import("./AnnotationFeatureModel").TranscriptPart[][];
298
+ readonly transcriptExonParts: import("./AnnotationFeatureModel.js").TranscriptPart[];
299
+ readonly transcriptParts: import("./AnnotationFeatureModel.js").TranscriptPart[][];
300
300
  } & {
301
- readonly cdsLocations: import("./AnnotationFeatureModel").TranscriptPartCoding[][];
301
+ readonly cdsLocations: import("./AnnotationFeatureModel.js").TranscriptPartCoding[][];
302
302
  readonly looksLikeGene: boolean;
303
303
  } & {
304
304
  setAttributes(attributes: Map<string, string[]>): void;
@@ -308,7 +308,7 @@ export declare const ApolloAssembly: import("mobx-state-tree").IModelType<{
308
308
  setMin(min: number): void;
309
309
  setMax(max: number): void;
310
310
  setStrand(strand?: 1 | -1): void;
311
- addChild(childFeature: import("./AnnotationFeatureModel").AnnotationFeatureSnapshot): void;
311
+ addChild(childFeature: import("./AnnotationFeatureModel.js").AnnotationFeatureSnapshot): void;
312
312
  deleteChild(childFeatureId: string): void;
313
313
  } & {
314
314
  update({ children, max, min, refSeq, strand, }: {
@@ -316,53 +316,53 @@ export declare const ApolloAssembly: import("mobx-state-tree").IModelType<{
316
316
  min: number;
317
317
  max: number;
318
318
  strand?: 1 | -1;
319
- children?: import("mobx-state-tree").SnapshotOrInstance<(import("mobx-state-tree").IMSTMap<import("mobx-state-tree").IAnyModelType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IMaybe<import("mobx-state-tree").IMapType<import("mobx-state-tree").IAnyModelType>>>) | undefined>;
319
+ children?: import("@jbrowse/mobx-state-tree").SnapshotOrInstance<(import("@jbrowse/mobx-state-tree").IMSTMap<import("@jbrowse/mobx-state-tree").IAnyModelType> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IAnyModelType>>>) | undefined>;
320
320
  }): void;
321
321
  } & {
322
- readonly parent: import("./AnnotationFeatureModel").AnnotationFeature | undefined;
323
- readonly topLevelFeature: import("./AnnotationFeatureModel").AnnotationFeature;
322
+ readonly parent: import("./AnnotationFeatureModel.js").AnnotationFeature | undefined;
323
+ readonly topLevelFeature: import("./AnnotationFeatureModel.js").AnnotationFeature;
324
324
  readonly assemblyId: string;
325
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
326
- sequence: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IModelType<{
327
- start: import("mobx-state-tree").ISimpleType<number>;
328
- stop: import("mobx-state-tree").ISimpleType<number>;
329
- sequence: import("mobx-state-tree").ISimpleType<string>;
330
- }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
331
- start: import("mobx-state-tree").ISimpleType<number>;
332
- stop: import("mobx-state-tree").ISimpleType<number>;
333
- sequence: import("mobx-state-tree").ISimpleType<string>;
334
- }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
335
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
336
- addFeature(feature: import("./AnnotationFeatureModel").AnnotationFeatureSnapshot): void;
325
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>>;
326
+ sequence: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IModelType<{
327
+ start: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
328
+ stop: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
329
+ sequence: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
330
+ }, {}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IModelType<{
331
+ start: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
332
+ stop: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
333
+ sequence: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
334
+ }, {}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>>;
335
+ } & import("@jbrowse/mobx-state-tree/dist/internal.js").NonEmptyObject & {
336
+ addFeature(feature: import("./AnnotationFeatureModel.js").AnnotationFeatureSnapshot): void;
337
337
  deleteFeature(featureId: string): boolean;
338
338
  setDescription(description: string): void;
339
- addSequence(seq: import("mobx-state-tree").SnapshotOrInstance<typeof import("./ApolloRefSeq").Sequence>): void;
339
+ addSequence(seq: import("@jbrowse/mobx-state-tree").SnapshotOrInstance<typeof import("./ApolloRefSeq.js").Sequence>): void;
340
340
  } & {
341
341
  getSequence(start: number, stop: number): string;
342
- getFeatures(min: number, max: number): import("./AnnotationFeatureModel").AnnotationFeature[];
343
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
344
- _id: import("mobx-state-tree").ISimpleType<string>;
345
- name: import("mobx-state-tree").ISimpleType<string>;
346
- description: import("mobx-state-tree").IType<string | undefined, string, string>;
347
- features: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
348
- _id: import("mobx-state-tree").ISimpleType<string>;
349
- refSeq: import("mobx-state-tree").ISimpleType<string>;
350
- type: import("mobx-state-tree").ISimpleType<string>;
351
- min: import("mobx-state-tree").ISimpleType<number>;
352
- max: import("mobx-state-tree").ISimpleType<number>;
353
- strand: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ITypeUnion<1 | -1, 1 | -1, 1 | -1>>;
354
- children: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IMapType<import("mobx-state-tree").IAnyModelType>>;
355
- attributes: import("mobx-state-tree").IMapType<import("mobx-state-tree").IArrayType<import("mobx-state-tree").ISimpleType<string>>>;
342
+ getFeatures(min: number, max: number): import("./AnnotationFeatureModel.js").AnnotationFeature[];
343
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
344
+ _id: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
345
+ name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
346
+ description: import("@jbrowse/mobx-state-tree").IType<string | undefined, string, string>;
347
+ features: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
348
+ _id: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
349
+ refSeq: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
350
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
351
+ min: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
352
+ max: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
353
+ strand: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ITypeUnion<1 | -1, 1 | -1, 1 | -1>>;
354
+ children: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IAnyModelType>>;
355
+ attributes: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>;
356
356
  }, {
357
357
  readonly length: number;
358
- readonly featureId: (import("mobx-state-tree").IMSTArray<import("mobx-state-tree").ISimpleType<string>> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").ISimpleType<string>>>) | undefined;
358
+ readonly featureId: (import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").ISimpleType<string>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>) | undefined;
359
359
  readonly minWithChildren: number;
360
360
  readonly maxWithChildren: number;
361
361
  hasDescendant(featureId: string): boolean;
362
- readonly transcriptExonParts: import("./AnnotationFeatureModel").TranscriptPart[];
363
- readonly transcriptParts: import("./AnnotationFeatureModel").TranscriptPart[][];
362
+ readonly transcriptExonParts: import("./AnnotationFeatureModel.js").TranscriptPart[];
363
+ readonly transcriptParts: import("./AnnotationFeatureModel.js").TranscriptPart[][];
364
364
  } & {
365
- readonly cdsLocations: import("./AnnotationFeatureModel").TranscriptPartCoding[][];
365
+ readonly cdsLocations: import("./AnnotationFeatureModel.js").TranscriptPartCoding[][];
366
366
  readonly looksLikeGene: boolean;
367
367
  } & {
368
368
  setAttributes(attributes: Map<string, string[]>): void;
@@ -372,7 +372,7 @@ export declare const ApolloAssembly: import("mobx-state-tree").IModelType<{
372
372
  setMin(min: number): void;
373
373
  setMax(max: number): void;
374
374
  setStrand(strand?: 1 | -1): void;
375
- addChild(childFeature: import("./AnnotationFeatureModel").AnnotationFeatureSnapshot): void;
375
+ addChild(childFeature: import("./AnnotationFeatureModel.js").AnnotationFeatureSnapshot): void;
376
376
  deleteChild(childFeatureId: string): void;
377
377
  } & {
378
378
  update({ children, max, min, refSeq, strand, }: {
@@ -380,30 +380,31 @@ export declare const ApolloAssembly: import("mobx-state-tree").IModelType<{
380
380
  min: number;
381
381
  max: number;
382
382
  strand?: 1 | -1;
383
- children?: import("mobx-state-tree").SnapshotOrInstance<(import("mobx-state-tree").IMSTMap<import("mobx-state-tree").IAnyModelType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IMaybe<import("mobx-state-tree").IMapType<import("mobx-state-tree").IAnyModelType>>>) | undefined>;
383
+ children?: import("@jbrowse/mobx-state-tree").SnapshotOrInstance<(import("@jbrowse/mobx-state-tree").IMSTMap<import("@jbrowse/mobx-state-tree").IAnyModelType> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IAnyModelType>>>) | undefined>;
384
384
  }): void;
385
385
  } & {
386
- readonly parent: import("./AnnotationFeatureModel").AnnotationFeature | undefined;
387
- readonly topLevelFeature: import("./AnnotationFeatureModel").AnnotationFeature;
386
+ readonly parent: import("./AnnotationFeatureModel.js").AnnotationFeature | undefined;
387
+ readonly topLevelFeature: import("./AnnotationFeatureModel.js").AnnotationFeature;
388
388
  readonly assemblyId: string;
389
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
390
- sequence: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
391
- start: import("mobx-state-tree").ISimpleType<number>;
392
- stop: import("mobx-state-tree").ISimpleType<number>;
393
- sequence: import("mobx-state-tree").ISimpleType<string>;
394
- }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
389
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
390
+ sequence: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IModelType<{
391
+ start: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
392
+ stop: import("@jbrowse/mobx-state-tree").ISimpleType<number>;
393
+ sequence: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
394
+ }, {}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
395
395
  }, {
396
- addFeature(feature: import("./AnnotationFeatureModel").AnnotationFeatureSnapshot): void;
396
+ addFeature(feature: import("./AnnotationFeatureModel.js").AnnotationFeatureSnapshot): void;
397
397
  deleteFeature(featureId: string): boolean;
398
398
  setDescription(description: string): void;
399
- addSequence(seq: import("mobx-state-tree").SnapshotOrInstance<typeof import("./ApolloRefSeq").Sequence>): void;
399
+ addSequence(seq: import("@jbrowse/mobx-state-tree").SnapshotOrInstance<typeof import("./ApolloRefSeq.js").Sequence>): void;
400
400
  } & {
401
401
  getSequence(start: number, stop: number): string;
402
- getFeatures(min: number, max: number): import("./AnnotationFeatureModel").AnnotationFeature[];
403
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
402
+ getFeatures(min: number, max: number): import("./AnnotationFeatureModel.js").AnnotationFeature[];
403
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
404
404
  addComment(comment: string): number;
405
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
405
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>;
406
406
  export interface ApolloAssemblyI extends Instance<typeof ApolloAssembly> {
407
407
  }
408
408
  export interface ApolloAssemblySnapshot extends SnapshotIn<typeof ApolloAssembly> {
409
409
  }
410
+ //# sourceMappingURL=ApolloAssembly.d.ts.map