@apollo-annotation/mst 0.3.1 → 0.3.3
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
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@@ -97,16 +97,25 @@ exports.AnnotationFeatureModel = mobx_state_tree_1.types
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97
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return false;
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},
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get transcriptParts() {
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100
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-
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101
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-
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100
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+
// eslint-disable-next-line @typescript-eslint/no-unsafe-assignment, @typescript-eslint/no-explicit-any
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101
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+
const session = (0, util_1.getSession)(self);
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102
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+
// eslint-disable-next-line @typescript-eslint/no-unsafe-assignment
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103
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const { apolloDataStore } = session;
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104
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+
// eslint-disable-next-line @typescript-eslint/no-unsafe-assignment, @typescript-eslint/no-unsafe-member-access
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105
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const { featureTypeOntology } = apolloDataStore.ontologyManager;
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106
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+
// eslint-disable-next-line @typescript-eslint/no-unsafe-call, @typescript-eslint/no-unsafe-member-access
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107
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if (!featureTypeOntology.isTypeOf(self.type, 'transcript')) {
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108
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throw new Error('Only features of type "transcript" or equivalent can calculate CDS locations');
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}
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const children = self.children;
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if (!children) {
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105
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throw new Error('no CDS or exons in
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112
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throw new Error('no CDS or exons in transcript');
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}
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107
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-
const cdsChildren = [...children.values()].filter(
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114
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const cdsChildren = [...children.values()].filter(
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115
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+
// eslint-disable-next-line @typescript-eslint/no-unsafe-call, @typescript-eslint/no-unsafe-member-access
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116
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(child) => featureTypeOntology.isTypeOf(child.type, 'CDS'));
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108
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if (cdsChildren.length === 0) {
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109
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throw new Error('no CDS in
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118
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throw new Error('no CDS in transcript');
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}
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const transcriptParts = [];
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for (const cds of cdsChildren) {
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@@ -115,7 +124,8 @@ exports.AnnotationFeatureModel = mobx_state_tree_1.types
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let hasIntersected = false;
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const exonLocations = [];
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for (const [, child] of children) {
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118
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-
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127
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+
// eslint-disable-next-line @typescript-eslint/no-unsafe-call, @typescript-eslint/no-unsafe-member-access
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128
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if (featureTypeOntology.isTypeOf(child.type, 'exon')) {
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exonLocations.push({ min: child.min, max: child.max });
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}
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}
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@@ -1 +1 @@
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1
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-
{"version":3,"file":"AnnotationFeatureModel.js","sourceRoot":"","sources":["../src/AnnotationFeatureModel.ts"],"names":[],"mappings":";;;AAAA,
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1
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+
{"version":3,"file":"AnnotationFeatureModel.js","sourceRoot":"","sources":["../src/AnnotationFeatureModel.ts"],"names":[],"mappings":";;;AAAA,6CAA8D;AAC9D,qDAUwB;AAExB,wBAAkC;AAElC,MAAM,qBAAqB,GAAG,uBAAK,CAAC,IAAI,CACtC,GAAkB,EAAE,CAAC,8BAAsB,CAC5C,CAAA;AAoBY,QAAA,sBAAsB,GAAG,uBAAK;KACxC,KAAK,CAAC,wBAAwB,EAAE;IAC/B,GAAG,EAAE,uBAAK,CAAC,UAAU;IACrB,2EAA2E;IAC3E,MAAM,EAAE,uBAAK,CAAC,MAAM;IACpB;;;;OAIG;IACH,IAAI,EAAE,uBAAK,CAAC,MAAM;IAClB;;;;OAIG;IACH,GAAG,EAAE,uBAAK,CAAC,MAAM;IACjB;;;;OAIG;IACH,GAAG,EAAE,uBAAK,CAAC,MAAM;IACjB;;;;OAIG;IACH,MAAM,EAAE,uBAAK,CAAC,KAAK,CAAC,uBAAK,CAAC,KAAK,CAAC,uBAAK,CAAC,OAAO,CAAC,CAAC,CAAC,EAAE,uBAAK,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;IACrE,qCAAqC;IACrC,QAAQ,EAAE,uBAAK,CAAC,KAAK,CAAC,uBAAK,CAAC,GAAG,CAAC,qBAAqB,CAAC,CAAC;IACvD;;;OAGG;IACH,UAAU,EAAE,uBAAK,CAAC,GAAG,CAAC,uBAAK,CAAC,KAAK,CAAC,uBAAK,CAAC,MAAM,CAAC,CAAC;CACjD,CAAC;KACD,KAAK,CAAC,CAAC,IAAI,EAAE,EAAE,CAAC,CAAC;IAChB,IAAI,MAAM;QACR,OAAO,IAAI,CAAC,GAAG,GAAG,IAAI,CAAC,GAAG,CAAA;IAC5B,CAAC;IACD,IAAI,SAAS;QACX,OAAO,IAAI,CAAC,UAAU,CAAC,GAAG,CAAC,IAAI,CAAC,CAAA;IAClC,CAAC;IACD;;;;OAIG;IACH,IAAI,eAAe;QACjB,IAAI,EAAE,GAAG,EAAE,GAAG,IAAI,CAAA;QAClB,MAAM,QAAQ,GAAG,IAAI,CAAC,QAAoB,CAAA;QAC1C,IAAI,CAAC,QAAQ,EAAE,CAAC;YACd,OAAO,GAAG,CAAA;QACZ,CAAC;QACD,KAAK,MAAM,CAAC,EAAE,KAAK,CAAC,IAAI,QAAQ,EAAE,CAAC;YACjC,GAAG,GAAG,IAAI,CAAC,GAAG,CAAC,GAAG,EAAE,KAAK,CAAC,GAAG,CAAC,CAAA;QAChC,CAAC;QACD,OAAO,GAAG,CAAA;IACZ,CAAC;IACD;;;;OAIG;IACH,IAAI,eAAe;QACjB,IAAI,EAAE,GAAG,EAAE,GAAG,IAAI,CAAA;QAClB,MAAM,QAAQ,GAAG,IAAI,CAAC,QAAoB,CAAA;QAC1C,IAAI,CAAC,QAAQ,EAAE,CAAC;YACd,OAAO,GAAG,CAAA;QACZ,CAAC;QACD,KAAK,MAAM,CAAC,EAAE,KAAK,CAAC,IAAI,QAAQ,EAAE,CAAC;YACjC,GAAG,GAAG,IAAI,CAAC,GAAG,CAAC,GAAG,EAAE,KAAK,CAAC,GAAG,CAAC,CAAA;QAChC,CAAC;QACD,OAAO,GAAG,CAAA;IACZ,CAAC;IACD,aAAa,CAAC,SAAiB;QAC7B,MAAM,QAAQ,GAAG,IAAI,CAAC,QAAoB,CAAA;QAC1C,IAAI,CAAC,QAAQ,EAAE,CAAC;YACd,OAAO,KAAK,CAAA;QACd,CAAC;QACD,KAAK,MAAM,CAAC,EAAE,EAAE,KAAK,CAAC,IAAI,QAAQ,EAAE,CAAC;YACnC,IAAI,EAAE,KAAK,SAAS,EAAE,CAAC;gBACrB,OAAO,IAAI,CAAA;YACb,CAAC;YACD,IAAI,KAAK,CAAC,aAAa,CAAC,SAAS,CAAC,EAAE,CAAC;gBACnC,OAAO,IAAI,CAAA;YACb,CAAC;QACH,CAAC;QACD,OAAO,KAAK,CAAA;IACd,CAAC;IACD,IAAI,eAAe;QACjB,uGAAuG;QACvG,MAAM,OAAO,GAAG,IAAA,iBAAU,EAAC,IAAI,CAAQ,CAAA;QACvC,mEAAmE;QACnE,MAAM,EAAE,eAAe,EAAE,GAAG,OAAO,CAAA;QACnC,+GAA+G;QAC/G,MAAM,EAAE,mBAAmB,EAAE,GAAG,eAAe,CAAC,eAAe,CAAA;QAC/D,yGAAyG;QACzG,IAAI,CAAC,mBAAmB,CAAC,QAAQ,CAAC,IAAI,CAAC,IAAI,EAAE,YAAY,CAAC,EAAE,CAAC;YAC3D,MAAM,IAAI,KAAK,CACb,8EAA8E,CAC/E,CAAA;QACH,CAAC;QACD,MAAM,QAAQ,GAAG,IAAI,CAAC,QAAoB,CAAA;QAC1C,IAAI,CAAC,QAAQ,EAAE,CAAC;YACd,MAAM,IAAI,KAAK,CAAC,+BAA+B,CAAC,CAAA;QAClD,CAAC;QACD,MAAM,WAAW,GAAG,CAAC,GAAG,QAAQ,CAAC,MAAM,EAAE,CAAC,CAAC,MAAM;QAC/C,yGAAyG;QACzG,CAAC,KAAK,EAAE,EAAE,CAAC,mBAAmB,CAAC,QAAQ,CAAC,KAAK,CAAC,IAAI,EAAE,KAAK,CAAC,CAC3D,CAAA;QACD,IAAI,WAAW,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YAC7B,MAAM,IAAI,KAAK,CAAC,sBAAsB,CAAC,CAAA;QACzC,CAAC;QACD,MAAM,eAAe,GAAsB,EAAE,CAAA;QAC7C,KAAK,MAAM,GAAG,IAAI,WAAW,EAAE,CAAC;YAC9B,MAAM,EAAE,GAAG,EAAE,MAAM,EAAE,GAAG,EAAE,MAAM,EAAE,GAAG,GAAG,CAAA;YACxC,MAAM,KAAK,GAAoB,EAAE,CAAA;YACjC,IAAI,cAAc,GAAG,KAAK,CAAA;YAC1B,MAAM,aAAa,GAA6B,EAAE,CAAA;YAClD,KAAK,MAAM,CAAC,EAAE,KAAK,CAAC,IAAI,QAAQ,EAAE,CAAC;gBACjC,yGAAyG;gBACzG,IAAI,mBAAmB,CAAC,QAAQ,CAAC,KAAK,CAAC,IAAI,EAAE,MAAM,CAAC,EAAE,CAAC;oBACrD,aAAa,CAAC,IAAI,CAAC,EAAE,GAAG,EAAE,KAAK,CAAC,GAAG,EAAE,GAAG,EAAE,KAAK,CAAC,GAAG,EAAE,CAAC,CAAA;gBACxD,CAAC;YACH,CAAC;YACD,aAAa,CAAC,IAAI,CAAC,CAAC,EAAE,GAAG,EAAE,CAAC,EAAE,EAAE,EAAE,GAAG,EAAE,CAAC,EAAE,EAAE,EAAE,CAAC,CAAC,GAAG,CAAC,CAAC,CAAA;YACrD,KAAK,MAAM,KAAK,IAAI,aAAa,EAAE,CAAC;gBAClC,MAAM,QAAQ,GAAG,KAAK,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAA;gBAC7B,IAAI,QAAQ,EAAE,CAAC;oBACb,KAAK,CAAC,IAAI,CAAC,EAAE,GAAG,EAAE,QAAQ,CAAC,GAAG,EAAE,GAAG,EAAE,KAAK,CAAC,GAAG,EAAE,IAAI,EAAE,QAAQ,EAAE,CAAC,CAAA;gBACnE,CAAC;gBACD,MAAM,CAAC,KAAK,EAAE,GAAG,CAAC,GAAG,IAAA,oBAAa,EAChC,MAAM,EACN,MAAM,EACN,KAAK,CAAC,GAAG,EACT,KAAK,CAAC,GAAG,CACV,CAAA;gBACD,IAAI,OAAyC,CAAA;gBAC7C,IAAI,cAAc,EAAE,CAAC;oBACnB,OAAO,GAAG,IAAI,CAAC,MAAM,KAAK,CAAC,CAAC,CAAC,CAAC,eAAe,CAAC,CAAC,CAAC,cAAc,CAAA;gBAChE,CAAC;qBAAM,CAAC;oBACN,OAAO,GAAG,IAAI,CAAC,MAAM,KAAK,CAAC,CAAC,CAAC,CAAC,cAAc,CAAC,CAAC,CAAC,eAAe,CAAA;gBAChE,CAAC;gBACD,IAAI,KAAK,KAAK,SAAS,IAAI,GAAG,KAAK,SAAS,EAAE,CAAC;oBAC7C,cAAc,GAAG,IAAI,CAAA;oBACrB,IAAI,KAAK,KAAK,KAAK,CAAC,GAAG,IAAI,GAAG,KAAK,KAAK,CAAC,GAAG,EAAE,CAAC;wBAC7C,KAAK,CAAC,IAAI,CAAC,EAAE,GAAG,EAAE,KAAK,EAAE,GAAG,EAAE,GAAG,EAAE,KAAK,EAAE,CAAC,EAAE,IAAI,EAAE,KAAK,EAAE,CAAC,CAAA;oBAC7D,CAAC;yBAAM,IAAI,KAAK,KAAK,KAAK,CAAC,GAAG,EAAE,CAAC;wBAC/B,KAAK,CAAC,IAAI,CACR,EAAE,GAAG,EAAE,KAAK,EAAE,GAAG,EAAE,GAAG,EAAE,KAAK,EAAE,CAAC,EAAE,IAAI,EAAE,KAAK,EAAE,EAC/C,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,KAAK,CAAC,GAAG,EAAE,IAAI,EAAE,OAAO,EAAE,CAC5C,CAAA;oBACH,CAAC;yBAAM,IAAI,GAAG,KAAK,KAAK,CAAC,GAAG,EAAE,CAAC;wBAC7B,KAAK,CAAC,IAAI,CACR,EAAE,GAAG,EAAE,KAAK,CAAC,GAAG,EAAE,GAAG,EAAE,KAAK,EAAE,IAAI,EAAE,OAAO,EAAE,EAC7C,EAAE,GAAG,EAAE,KAAK,EAAE,GAAG,EAAE,GAAG,EAAE,KAAK,EAAE,CAAC,EAAE,IAAI,EAAE,KAAK,EAAE,CAChD,CAAA;oBACH,CAAC;yBAAM,CAAC;wBACN,KAAK,CAAC,IAAI,CACR,EAAE,G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