@apollo-annotation/jbrowse-plugin-apollo 1.0.1 → 1.1.0

package/dist/ApolloInternetAccount/components/AuthTypeSelector.d.ts

@@ -1,6 +1,12 @@
+interface AuthType {
+    name: string;
+    message: string;
+    needsPopup: boolean;
+}
 export declare const AuthTypeSelector: ({ baseURL, handleClose, name, }: {
     baseURL: string;
     name: string;
-    handleClose: (type?: "google" | "microsoft" | "guest" | Error) => void;
-}) => import("react/jsx-runtime").JSX.Element;
+    handleClose: (type?: AuthType | Error) => void;
+}) => import("react/jsx-runtime").JSX.Element | "Loading…";
+export {};
 //# sourceMappingURL=AuthTypeSelector.d.ts.map

package/dist/ApolloInternetAccount/components/AuthTypeSelector.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"AuthTypeSelector.d.ts","sourceRoot":"","sources":["../../../src/ApolloInternetAccount/components/AuthTypeSelector.tsx"],"names":[],"mappings":"AAwBA,eAAO,MAAM,gBAAgB,oCAI1B;IACD,OAAO,EAAE,MAAM,CAAA;IACf,IAAI,EAAE,MAAM,CAAA;IACZ,WAAW,EAAE,CAAC,IAAI,CAAC,EAAE,QAAQ,GAAG,WAAW,GAAG,OAAO,GAAG,KAAK,KAAK,IAAI,CAAA;CACvE,4CAyGA,CAAA"}
+{"version":3,"file":"AuthTypeSelector.d.ts","sourceRoot":"","sources":["../../../src/ApolloInternetAccount/components/AuthTypeSelector.tsx"],"names":[],"mappings":"AA6BA,UAAU,QAAQ;IAChB,IAAI,EAAE,MAAM,CAAA;IACZ,OAAO,EAAE,MAAM,CAAA;IACf,UAAU,EAAE,OAAO,CAAA;CACpB;AAED,eAAO,MAAM,gBAAgB,oCAI1B;IACD,OAAO,EAAE,MAAM,CAAA;IACf,IAAI,EAAE,MAAM,CAAA;IACZ,WAAW,EAAE,CAAC,IAAI,CAAC,EAAE,QAAQ,GAAG,KAAK,KAAK,IAAI,CAAA;CAC/C,yDAiIA,CAAA"}

package/dist/ApolloInternetAccount/components/LoginButtons.d.ts

@@ -1,5 +1,10 @@
 import { type ButtonProps } from '@mui/material';
-export declare function GoogleButton(props: ButtonProps): import("react/jsx-runtime").JSX.Element;
-export declare function MicrosoftButton(props: ButtonProps): import("react/jsx-runtime").JSX.Element;
-export declare function GuestButton(props: ButtonProps): import("react/jsx-runtime").JSX.Element;
+interface LoginButtonProps extends ButtonProps {
+    message: string;
+}
+export declare function GoogleButton(props: LoginButtonProps): import("react/jsx-runtime").JSX.Element;
+export declare function MicrosoftButton(props: LoginButtonProps): import("react/jsx-runtime").JSX.Element;
+export declare function GuestButton(props: LoginButtonProps): import("react/jsx-runtime").JSX.Element;
+export declare function GenericButton(props: LoginButtonProps): import("react/jsx-runtime").JSX.Element;
+export {};
 //# sourceMappingURL=LoginButtons.d.ts.map

package/dist/ApolloInternetAccount/components/LoginButtons.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"LoginButtons.d.ts","sourceRoot":"","sources":["../../../src/ApolloInternetAccount/components/LoginButtons.tsx"],"names":[],"mappings":"AAGA,OAAO,EAAU,KAAK,WAAW,EAAE,MAAM,eAAe,CAAA;AAiBxD,UAAU,gBAAiB,SAAQ,WAAW;IAC5C,OAAO,EAAE,MAAM,CAAA;CAChB;AAED,wBAAgB,YAAY,CAAC,KAAK,EAAE,gBAAgB,2CAanD;AAED,wBAAgB,eAAe,CAAC,KAAK,EAAE,gBAAgB,2CAatD;AAED,wBAAgB,WAAW,CAAC,KAAK,EAAE,gBAAgB,2CAalD;AAED,wBAAgB,aAAa,CAAC,KAAK,EAAE,gBAAgB,2CAapD"}

package/dist/ApolloInternetAccount/configSchema.d.ts

@@ -0,0 +1,44 @@
+import type { Instance } from '@jbrowse/mobx-state-tree';
+declare const ApolloConfigSchema: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+    baseURL: {
+        description: string;
+        type: string;
+        defaultValue: string;
+    };
+    tokenType: {
+        description: string;
+        type: string;
+        defaultValue: string;
+    };
+}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+    name: {
+        description: string;
+        type: string;
+        defaultValue: string;
+    };
+    description: {
+        description: string;
+        type: string;
+        defaultValue: string;
+    };
+    authHeader: {
+        description: string;
+        type: string;
+        defaultValue: string;
+    };
+    tokenType: {
+        description: string;
+        type: string;
+        defaultValue: string;
+    };
+    domains: {
+        description: string;
+        type: string;
+        defaultValue: never[];
+    };
+}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "internetAccountId">>, undefined>>;
+export type ApolloInternetAccountConfigModel = typeof ApolloConfigSchema;
+export interface ApolloInternetAccountConfig extends Instance<ApolloInternetAccountConfigModel> {
+}
+export default ApolloConfigSchema;
+//# sourceMappingURL=configSchema.d.ts.map

package/dist/ApolloInternetAccount/configSchema.d.ts.map

@@ -0,0 +1 @@
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package/dist/ApolloInternetAccount/model.d.ts

@@ -0,0 +1,174 @@
+import { type UserLocation } from '@apollo-annotation/shared';
+import { type UriLocation } from '@jbrowse/core/util';
+import { type Instance } from '@jbrowse/mobx-state-tree';
+import type { ApolloInternetAccountConfigModel } from './configSchema';
+type Role = 'admin' | 'user' | 'readOnly' | 'none';
+declare const stateModelFactory: (configSchema: ApolloInternetAccountConfigModel) => import("@jbrowse/mobx-state-tree").IModelType<{
+    id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+    type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+    configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+        name: {
+            description: string;
+            type: string;
+            defaultValue: string;
+        };
+        description: {
+            description: string;
+            type: string;
+            defaultValue: string;
+        };
+        authHeader: {
+            description: string;
+            type: string;
+            defaultValue: string;
+        };
+        tokenType: {
+            description: string;
+            type: string;
+            defaultValue: string;
+        };
+        domains: {
+            description: string;
+            type: string;
+            defaultValue: never[];
+        };
+    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "internetAccountId">>;
+} & {
+    type: import("@jbrowse/mobx-state-tree").ISimpleType<"ApolloInternetAccount">;
+    configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+        baseURL: {
+            description: string;
+            type: string;
+            defaultValue: string;
+        };
+        tokenType: {
+            description: string;
+            type: string;
+            defaultValue: string;
+        };
+    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+        name: {
+            description: string;
+            type: string;
+            defaultValue: string;
+        };
+        description: {
+            description: string;
+            type: string;
+            defaultValue: string;
+        };
+        authHeader: {
+            description: string;
+            type: string;
+            defaultValue: string;
+        };
+        tokenType: {
+            description: string;
+            type: string;
+            defaultValue: string;
+        };
+        domains: {
+            description: string;
+            type: string;
+            defaultValue: never[];
+        };
+    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "internetAccountId">>, undefined>>;
+}, {
+    readonly name: string;
+    readonly description: string;
+    readonly internetAccountId: string;
+    readonly authHeader: string;
+    readonly tokenType: string;
+    readonly domains: string[];
+    readonly toggleContents: import("react").ReactNode;
+    readonly SelectorComponent: import("@jbrowse/core/util").AnyReactComponentType | undefined;
+    readonly selectorLabel: string | undefined;
+} & {
+    handlesLocation(location: UriLocation): boolean;
+    readonly tokenKey: string;
+} & {
+    getTokenFromUser(_resolve: (token: string) => void, _reject: (error: Error) => void): void;
+    storeToken(token: string): void;
+    removeToken(): void;
+    retrieveToken(): string | null;
+    validateToken(token: string, _loc: UriLocation): Promise<string>;
+} & {
+    getToken(location?: UriLocation): Promise<string>;
+} & {
+    addAuthHeaderToInit(init?: RequestInit, token?: string): {
+        headers: Headers;
+        body?: BodyInit | null;
+        cache?: RequestCache;
+        credentials?: RequestCredentials;
+        integrity?: string;
+        keepalive?: boolean;
+        method?: string;
+        mode?: RequestMode;
+        priority?: RequestPriority;
+        redirect?: RequestRedirect;
+        referrer?: string;
+        referrerPolicy?: ReferrerPolicy;
+        signal?: AbortSignal | null;
+        window?: null;
+    };
+    getPreAuthorizationInformation(location: UriLocation): Promise<{
+        internetAccountType: string;
+        authInfo: {
+            token: string;
+            configuration: any;
+        };
+    }>;
+} & {
+    getFetcher(loc?: UriLocation): (input: RequestInfo, init?: RequestInit) => Promise<Response>;
+} & {
+    openLocation(location: UriLocation): import("@jbrowse/core/util/io").RemoteFileWithRangeCache;
+} & {
+    readonly baseURL: string;
+    getUserId(): string | undefined;
+} & {
+    role: Role | undefined;
+    controller: AbortController;
+    tokenPromise: Promise<string> | undefined;
+} & {
+    setRole(): void;
+} & {
+    getFetcher(loc?: UriLocation): (input: RequestInfo, init?: RequestInit) => Promise<Response>;
+} & {
+    removeToken(): void;
+} & {
+    getToken(location?: UriLocation): Promise<string>;
+} & {
+    addMessageChannel(resolve: (token: string) => void, reject: (error: Error) => void): void;
+    deleteMessageChannel(): void;
+    finishOAuthWindow(event: MessageEvent, resolve: (token: string) => void, reject: (error: Error) => void): void;
+    openAuthWindow(type: string, resolve: (token: string) => void, reject: (error: Error) => void): Promise<void>;
+} & {
+    getTokenFromUser(resolve: (token: string) => void, reject: (error: Error) => void): Promise<void>;
+} & {
+    lastChangeSequenceNumber: number | undefined;
+} & {
+    setLastChangeSequenceNumber(sequenceNumber: number): void;
+} & {
+    updateLastChangeSequenceNumber: () => Promise<void>;
+    getMissingChanges: () => Promise<void>;
+} & {
+    socket: import("socket.io-client").Socket<import("@socket.io/component-emitter").DefaultEventsMap, import("@socket.io/component-emitter").DefaultEventsMap>;
+} & {
+    addSocketListeners(): void;
+} & {
+    postUserLocation: (userLocation: UserLocation[]) => void;
+} & {
+    roleNotificationSent: boolean;
+} & {
+    initialize: (role: Role) => Promise<void>;
+    removeBeforeUnloadListener(): void;
+    removeVisibilityChangeListener(): void;
+} & {
+    afterAttach(): void;
+    beforeDestroy(): void;
+}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>;
+export default stateModelFactory;
+export type ApolloInternetAccountStateModel = ReturnType<typeof stateModelFactory>;
+export interface ApolloInternetAccountModel extends Instance<ApolloInternetAccountStateModel> {
+}
+//# sourceMappingURL=model.d.ts.map

package/dist/ApolloInternetAccount/model.d.ts.map

@@ -0,0 +1 @@
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package/dist/ApolloJobModel.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"ApolloJobModel.d.ts","sourceRoot":"","sources":["../src/ApolloJobModel.ts"],"names":[],"mappings":"AAQA,MAAM,WAAW,SAAS;IACxB,IAAI,EAAE,MAAM,CAAA;IACZ,cAAc,CAAC,EAAE,MAAM,IAAI,CAAA;IAC3B,WAAW,CAAC,EAAE,MAAM,CAAA;IACpB,aAAa,CAAC,EAAE,MAAM,CAAA;CACvB;AACD,MAAM,WAAW,aAAa;IAC5B,EAAE,EAAE,MAAM,CAAA;IACV,IAAI,EAAE,gBAAgB,CAAA;IACtB,IAAI,EAAE,SAAS,EAAE,CAAA;IACjB,QAAQ,EAAE,SAAS,EAAE,CAAA;IACrB,MAAM,EAAE,SAAS,EAAE,CAAA;IACnB,OAAO,EAAE,SAAS,EAAE,CAAA;IACpB,MAAM,CAAC,GAAG,EAAE,SAAS,GAAG,IAAI,CAAA;IAC5B,SAAS,CAAC,OAAO,EAAE,MAAM,GAAG,IAAI,CAAA;IAChC,cAAc,CAAC,GAAG,EAAE,SAAS,GAAG,IAAI,CAAA;IACpC,YAAY,CAAC,GAAG,EAAE,SAAS,GAAG,IAAI,CAAA;IAClC,aAAa,CAAC,GAAG,EAAE,SAAS,GAAG,IAAI,CAAA;IACnC,eAAe,CAAC,OAAO,EAAE,MAAM,GAAG,IAAI,CAAA;IACtC,sBAAsB,CAAC,OAAO,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,MAAM,GAAG,IAAI,CAAA;IAC/D,oBAAoB,CAAC,OAAO,EAAE,MAAM,EAAE,GAAG,EAAE,MAAM,GAAG,IAAI,CAAA;CACzD;AAED,eAAO,MAAM,cAAc;8BASgB,aAAa;;IAIpD;;;;;OAKG;oBACa,MAAM,iBAAiB,MAAM,gBAAgB,MAAM;IAMnE;;;;OAIG;sBACe,MAAM,QAAQ,MAAM;IAoBtC;;;OAGG;gBACS,SAAS;IAOrB;;;;;;OAMG;cACO,SAAS;wGAclB,CAAA"}

package/dist/ApolloRefNameAliasAdapter/configSchema.d.ts

@@ -0,0 +1,8 @@
+declare const _default: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+    assemblyId: {
+        type: string;
+        defaultValue: string;
+    };
+}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
+export default _default;
+//# sourceMappingURL=configSchema.d.ts.map

package/dist/ApolloRefNameAliasAdapter/configSchema.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"configSchema.d.ts","sourceRoot":"","sources":["../../src/ApolloRefNameAliasAdapter/configSchema.ts"],"names":[],"mappings":";;;;;;AAEA,wBASC"}

package/dist/ApolloSequenceAdapter/configSchema.d.ts

@@ -0,0 +1,8 @@
+declare const _default: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+    assemblyId: {
+        type: string;
+        defaultValue: string;
+    };
+}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
+export default _default;
+//# sourceMappingURL=configSchema.d.ts.map

package/dist/ApolloSequenceAdapter/configSchema.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"configSchema.d.ts","sourceRoot":"","sources":["../../src/ApolloSequenceAdapter/configSchema.ts"],"names":[],"mappings":";;;;;;AAEA,wBASC"}

package/dist/ApolloTextSearchAdapter/configSchema.d.ts

@@ -0,0 +1,20 @@
+declare const _default: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+    assemblyNames: {
+        type: string;
+        defaultValue: never[];
+        description: string;
+    };
+    trackId: {
+        type: string;
+        defaultValue: string;
+    };
+    baseURL: {
+        type: string;
+        defaultValue: {
+            uri: string;
+            locationType: string;
+        };
+    };
+}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "textSearchAdapterId">>;
+export default _default;
+//# sourceMappingURL=configSchema.d.ts.map

package/dist/ApolloTextSearchAdapter/configSchema.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"configSchema.d.ts","sourceRoot":"","sources":["../../src/ApolloTextSearchAdapter/configSchema.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;AAEA,wBAqBC"}

package/dist/BackendDrivers/CollaborationServerDriver.d.ts

@@ -61,7 +61,7 @@ export declare class CollaborationServerDriver extends BackendDriver {
     getRegions(assemblyName: string): Promise<Region[]>;
     getAssemblies(internetAccountId?: string): ({
         configuration: any;
-    } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
+    } & import("@jbrowse/mobx-state-tree").NonEmptyObject & {
         error: unknown;
         loadingP: Promise<void> | undefined;
         volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;

package/dist/BackendDrivers/CollaborationServerDriver.d.ts.map

@@ -1 +1 @@
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package/dist/BackendDrivers/LocalDriver/LocalDriver.d.ts.map

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package/dist/FeatureDetailsWidget/ApolloFeatureDetailsWidget.d.ts.map

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package/dist/FeatureDetailsWidget/ApolloTranscriptDetailsWidget.d.ts.map

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package/dist/FeatureDetailsWidget/TranscriptSequence.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"TranscriptSequence.d.ts","sourceRoot":"","sources":["../../src/FeatureDetailsWidget/TranscriptSequence.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,iBAAiB,EAAE,MAAM,wBAAwB,CAAA;AAc/D,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,YAAY,CAAA;AAwJpD,eAAO,MAAM,kBAAkB,6CAK5B;IACD,QAAQ,EAAE,MAAM,CAAA;IAChB,OAAO,EAAE,iBAAiB,CAAA;IAC1B,OAAO,EAAE,MAAM,CAAA;IACf,OAAO,EAAE,kBAAkB,CAAA;CAC5B,mDAyKC,CAAA;AACF,eAAe,kBAAkB,CAAA"}
+{"version":3,"file":"TranscriptSequence.d.ts","sourceRoot":"","sources":["../../src/FeatureDetailsWidget/TranscriptSequence.tsx"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,iBAAiB,EAAE,MAAM,wBAAwB,CAAA;AAc/D,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,YAAY,CAAA;AAwJpD,eAAO,MAAM,kBAAkB,6CAK5B;IACD,QAAQ,EAAE,MAAM,CAAA;IAChB,OAAO,EAAE,iBAAiB,CAAA;IAC1B,OAAO,EAAE,MAAM,CAAA;IACf,OAAO,EAAE,kBAAkB,CAAA;CAC5B,mDAyKC,CAAA;AACF,eAAe,kBAAkB,CAAA"}

package/dist/FeatureDetailsWidget/TranscriptWidgetEditLocation.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"TranscriptWidgetEditLocation.d.ts","sourceRoot":"","sources":["../../src/FeatureDetailsWidget/TranscriptWidgetEditLocation.tsx"],"names":[],"mappings":"AAKA,OAAO,KAAK,EAAE,iBAAiB,EAAkB,MAAM,wBAAwB,CAAA;AA4B/E,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,YAAY,CAAA;AAuEpD,eAAO,MAAM,4BAA4B,6CAMpC;IACD,OAAO,EAAE,iBAAiB,CAAA;IAC1B,OAAO,EAAE,MAAM,CAAA;IACf,OAAO,EAAE,kBAAkB,CAAA;IAC3B,QAAQ,EAAE,MAAM,CAAA;CACjB,mDAqlCF,CAAA"}
+{"version":3,"file":"TranscriptWidgetEditLocation.d.ts","sourceRoot":"","sources":["../../src/FeatureDetailsWidget/TranscriptWidgetEditLocation.tsx"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,iBAAiB,EAAkB,MAAM,wBAAwB,CAAA;AAa/E,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,YAAY,CAAA;AAgDpD,eAAO,MAAM,4BAA4B,6CAMpC;IACD,OAAO,EAAE,iBAAiB,CAAA;IAC1B,OAAO,EAAE,MAAM,CAAA;IACf,OAAO,EAAE,kBAAkB,CAAA;IAC3B,QAAQ,EAAE,MAAM,CAAA;CACjB,mDA6yBF,CAAA"}

package/dist/FeatureDetailsWidget/Translation.d.ts

@@ -0,0 +1,14 @@
+import type { AnnotationFeature, ApolloRefSeqI, TranscriptPartCoding } from '@apollo-annotation/mst';
+import type { ApolloSessionModel } from '../session';
+export declare function Translation({ changeInProgress, cdsLocations, refData, strand, updateCDSLocation, cdsMin, cdsMax, feature, session, }: {
+    changeInProgress: boolean;
+    cdsLocations: TranscriptPartCoding[][];
+    refData: ApolloRefSeqI;
+    strand: 1 | -1 | undefined;
+    updateCDSLocation(oldLocation: number, newLocation: number, feature: AnnotationFeature, isMin: boolean, onComplete?: () => void): boolean;
+    cdsMin: number;
+    cdsMax: number;
+    feature: AnnotationFeature;
+    session: ApolloSessionModel;
+}): import("react/jsx-runtime").JSX.Element;
+//# sourceMappingURL=Translation.d.ts.map

package/dist/FeatureDetailsWidget/Translation.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"Translation.d.ts","sourceRoot":"","sources":["../../src/FeatureDetailsWidget/Translation.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EACV,iBAAiB,EACjB,aAAa,EACb,oBAAoB,EACrB,MAAM,wBAAwB,CAAA;AAmB/B,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,YAAY,CAAA;AA0BpD,wBAAgB,WAAW,CAAC,EAC1B,gBAAgB,EAChB,YAAY,EACZ,OAAO,EACP,MAAM,EAEN,iBAAiB,EACjB,MAAM,EACN,MAAM,EACN,OAAO,EACP,OAAO,GACR,EAAE;IACD,gBAAgB,EAAE,OAAO,CAAA;IACzB,YAAY,EAAE,oBAAoB,EAAE,EAAE,CAAA;IACtC,OAAO,EAAE,aAAa,CAAA;IACtB,MAAM,EAAE,CAAC,GAAG,CAAC,CAAC,GAAG,SAAS,CAAA;IAC1B,iBAAiB,CACf,WAAW,EAAE,MAAM,EACnB,WAAW,EAAE,MAAM,EACnB,OAAO,EAAE,iBAAiB,EAC1B,KAAK,EAAE,OAAO,EACd,UAAU,CAAC,EAAE,MAAM,IAAI,GACtB,OAAO,CAAA;IACV,MAAM,EAAE,MAAM,CAAA;IACd,MAAM,EAAE,MAAM,CAAA;IACd,OAAO,EAAE,iBAAiB,CAAA;IAC1B,OAAO,EAAE,kBAAkB,CAAA;CAC5B,2CAyRA"}

package/dist/LinearApolloDisplay/components/CheckResultWarnings.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"CheckResultWarnings.d.ts","sourceRoot":"","sources":["../../../src/LinearApolloDisplay/components/CheckResultWarnings.tsx"],"names":[],"mappings":"AASA,OAAO,KAAK,EAAE,mBAAmB,IAAI,oBAAoB,EAAE,MAAM,eAAe,CAAA;AAEhF,eAAO,MAAM,mBAAmB,iBAE7B;IACD,OAAO,EAAE,oBAAoB,CAAA;CAC9B,yEAwEC,CAAA"}
+{"version":3,"file":"CheckResultWarnings.d.ts","sourceRoot":"","sources":["../../../src/LinearApolloDisplay/components/CheckResultWarnings.tsx"],"names":[],"mappings":"AAUA,OAAO,KAAK,EAAE,mBAAmB,IAAI,oBAAoB,EAAE,MAAM,eAAe,CAAA;AAEhF,eAAO,MAAM,mBAAmB,iBAE7B;IACD,OAAO,EAAE,oBAAoB,CAAA;CAC9B,yEA0EC,CAAA"}

package/dist/LinearApolloDisplay/configSchema.d.ts

@@ -0,0 +1,2 @@
+export declare const configSchema: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
+//# sourceMappingURL=configSchema.d.ts.map

package/dist/LinearApolloDisplay/configSchema.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"configSchema.d.ts","sourceRoot":"","sources":["../../src/LinearApolloDisplay/configSchema.ts"],"names":[],"mappings":"AAEA,eAAO,MAAM,YAAY,qMAIxB,CAAA"}

package/dist/LinearApolloDisplay/glyphs/ExonGlyph.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"ExonGlyph.d.ts","sourceRoot":"","sources":["../../../src/LinearApolloDisplay/glyphs/ExonGlyph.ts"],"names":[],"mappings":"AAqBA,OAAO,KAAK,EAAE,KAAK,EAAe,MAAM,SAAS,CAAA;AAuLjD,eAAO,MAAM,SAAS,EAAE,KAOvB,CAAA"}
+{"version":3,"file":"ExonGlyph.d.ts","sourceRoot":"","sources":["../../../src/LinearApolloDisplay/glyphs/ExonGlyph.ts"],"names":[],"mappings":"AAoBA,OAAO,KAAK,EAAE,KAAK,EAAe,MAAM,SAAS,CAAA;AAqLjD,eAAO,MAAM,SAAS,EAAE,KAOvB,CAAA"}

package/dist/LinearApolloDisplay/glyphs/GeneGlyph.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"GeneGlyph.d.ts","sourceRoot":"","sources":["../../../src/LinearApolloDisplay/glyphs/GeneGlyph.ts"],"names":[],"mappings":"AAUA,OAAO,KAAK,EAAE,KAAK,EAAe,MAAM,SAAS,CAAA;AAiGjD,eAAO,MAAM,SAAS,EAAE,KAOvB,CAAA"}
+{"version":3,"file":"GeneGlyph.d.ts","sourceRoot":"","sources":["../../../src/LinearApolloDisplay/glyphs/GeneGlyph.ts"],"names":[],"mappings":"AAUA,OAAO,KAAK,EAAE,KAAK,EAAe,MAAM,SAAS,CAAA;AA+FjD,eAAO,MAAM,SAAS,EAAE,KAOvB,CAAA"}

package/dist/LinearApolloDisplay/glyphs/TranscriptGlyph.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"TranscriptGlyph.d.ts","sourceRoot":"","sources":["../../../src/LinearApolloDisplay/glyphs/TranscriptGlyph.ts"],"names":[],"mappings":"AAiBA,OAAO,KAAK,EAAE,KAAK,EAA0B,MAAM,SAAS,CAAA;AA0Q5D,eAAO,MAAM,eAAe,EAAE,KAO7B,CAAA"}
+{"version":3,"file":"TranscriptGlyph.d.ts","sourceRoot":"","sources":["../../../src/LinearApolloDisplay/glyphs/TranscriptGlyph.ts"],"names":[],"mappings":"AAqBA,OAAO,KAAK,EAAE,KAAK,EAA0B,MAAM,SAAS,CAAA;AAuS5D,eAAO,MAAM,eAAe,EAAE,KAO7B,CAAA"}

package/dist/LinearApolloDisplay/stateModel/base.d.ts

@@ -3,7 +3,6 @@ import type PluginManager from '@jbrowse/core/PluginManager';
 import { type AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
 import type { LinearGenomeViewModel } from '@jbrowse/plugin-linear-genome-view';
 import type { ApolloInternetAccountModel } from '../../ApolloInternetAccount/model';
-import { Export as ExportIcon } from '../../components/DownloadGFF3';
 import type { ApolloSessionModel, HoveredFeature } from '../../session';
 export declare function baseModelFactory(_pluginManager: PluginManager, configSchema: AnyConfigurationSchemaType): import("@jbrowse/mobx-state-tree").IModelType<{
     id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
@@ -214,7 +213,7 @@ export declare function baseModelFactory(_pluginManager: PluginManager, configSc
 } & {
     readonly apolloInternetAccount: ApolloInternetAccountModel | undefined;
     readonly changeManager: import("../../ChangeManager").ChangeManager;
-    getAssemblyId(assemblyName: string): string;
+    getAssemblyId(assemblyName: string): any;
     readonly selectedFeature: AnnotationFeature | undefined;
     readonly hoveredFeature: HoveredFeature | undefined;
 } & {
@@ -245,22 +244,6 @@ export declare function baseModelFactory(_pluginManager: PluginManager, configSc
             type?: undefined;
             checked?: undefined;
         })[];
-        icon?: undefined;
-        onClick?: undefined;
-    } | {
-        label: string;
-        icon: typeof ExportIcon;
-        onClick: () => void;
-        type?: undefined;
-        subMenu?: undefined;
-    } | {
-        label: string;
-        icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
-            muiName: string;
-        };
-        onClick: () => void;
-        type?: undefined;
-        subMenu?: undefined;
     })[];
 } & {
     setSelectedFeature(feature?: AnnotationFeature): void;

package/dist/LinearApolloDisplay/stateModel/base.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"base.d.ts","sourceRoot":"","sources":["../../../src/LinearApolloDisplay/stateModel/base.ts"],"names":[],"mappings":"AAKA,OAAO,KAAK,EAAE,iBAAiB,EAAE,MAAM,wBAAwB,CAAA;AAC/D,OAAO,KAAK,aAAa,MAAM,6BAA6B,CAAA;AAE5D,OAAO,EACL,KAAK,0BAA0B,EAGhC,MAAM,6BAA6B,CAAA;AAiBpC,OAAO,KAAK,EAAE,qBAAqB,EAAE,MAAM,oCAAoC,CAAA;AAM/E,OAAO,KAAK,EAAE,0BAA0B,EAAE,MAAM,mCAAmC,CAAA;AASnF,OAAO,KAAK,EAAE,kBAAkB,EAAE,cAAc,EAAE,MAAM,eAAe,CAAA;AAOvE,wBAAgB,gBAAgB,CAC9B,cAAc,EAAE,aAAa,EAC7B,YAAY,EAAE,0BAA0B;eAjDzC,0BAA0B,wBAAwB,0BACvC;iBACV,0BAA0B;0BACZ,0BAA0B,gBAAgB,0BAEtD;;;;;;;;;;;;;;;;;;;;;mBAWF,wCAAwC;;;;mBAMnC,0BAEE,wBACT,0BAAyB;uBAAsC,0BACtD,wBAAwB,0BAChC;yBACY,0BAA0B;kCAGvC,0BAA0B,gBAAiB,0BAAyB;;;;;kBAMpE,0BAAyB,yBAAyB,0BAC7C;0BAA8C,CAAC;kBAC/B,CAAC;;;;;;;mBAGW,wCAC3B;;;;mBAMK,0BAA0B,wBAExB,0BAA0B;uBAE7B,0BAA0B,wBAC1B,0BAA0B;yBAEpB,0BACM;kCAEC,0BACV,gBACH,0BACR;;;;;kBAME,0BAEJ,yBAAyB,0BAA0B;;;iCAIzB,oBACd;;;;;;;;;;;mBAcG,wCACI;;;;;;;;;;2BAgBf,wCAEQ;;;;2BAMC,0BACI,wBAAwB,0BACxC;+BAA8C,0BAC9B,wBACF,0BACK;iCAGZ,0BACY;0CAGZ,0BAA0B,gBAAgB,0BACxC;;;;;0BAQuB,0BAAyB,yBAC1C,0BACf;kCACkB,CAAC;0BACZ,CAAL;;;;;;;2BAM6C,wCAE9C;;;;2BAG2E,0BACtD,wBAAwB,0BAEnC;+BACkB,0BAA0B,wBAE3C,0BAA0B;iCAEV,0BAA0B;0CAE/C,0BACJ,gBAAgB,0BAA0B;;;;;0BAOnC,0BAA0B,yBAC7B,0BAAuB;;;yCAKN,oBAExB;;;;mBAIyB,0BACb,wBACL,0BAAiB;uBAAsC,0BACvC,wBAElB,0BACN;yBAEM,0BACgB;kCAEE,0BAET,gBACP,0BAAiB;;;;;;;;;;;2BAYoC,wCACtC;;;;2BAOb,0BAAkB,wBAAwB,0BAC7C;+BACM,0BAA0B,wBAClB,0BACN;iCACG,0BACA;0CAGJ,0BAAY,gBACZ,0BACN;;;;;0BAKuB,0BACnB,yBACI,0BAEX;kCACa,CAAL;0BACO,CAAC;;;;;;;2BAOU,wCACO;;;;2BAMJ,0BAChB,wBACA,0BAAc;+BACC,0BACT,wBAAwB,0BAE7C;iCAEiC,0BACxB;0CAC8B,0BAC1C,gBAAsB,0BAAoB;;;;;0BAQA,0BACtB,yBACJ,0BAAwB;;;yCAGpB,oBAAO;;;;kBAML,0BAAS,yBAAyB,0BAC7C;;kCACa,qCAAM;;;;;;;;;;;;;;;kBApMuB,qBAAqB;;;;;;sBA0B5B,kBAAkB;;;;;;;;;oCAuCnD,0BAA0B,GAAG,SAAS;;gCAKjB,MAAM;;;;4BAiBV,MAAM;6BAGL,MAAM;2BAIR,MAAM;;;;;sCAoBK,MAAM,EAAE;wBAGtB,OAAO;+CAGgB;QAAE,aAAa,EAAE,MAAM,CAAA;KAAE;;;;;;;;;;;;;;;;;;iCA0LvC,iBAAiB;uCAGX,cAAc;sCAItC,iBAAiB,0BACF,CAAC,MAAM,EAAE,MAAM,CAAC;;yGAgD/C"}

package/dist/LinearApolloDisplay/stateModel/index.d.ts

@@ -232,7 +232,7 @@ export declare function stateModelFactory(pluginManager: PluginManager, configSc
 } & {
     readonly apolloInternetAccount: import("../../ApolloInternetAccount/model").ApolloInternetAccountModel | undefined;
     readonly changeManager: import("../../ChangeManager").ChangeManager;
-    getAssemblyId(assemblyName: string): string;
+    getAssemblyId(assemblyName: string): any;
     readonly selectedFeature: import("@apollo-annotation/mst").AnnotationFeature | undefined;
     readonly hoveredFeature: import("../../session").HoveredFeature | undefined;
 } & {
@@ -263,22 +263,6 @@ export declare function stateModelFactory(pluginManager: PluginManager, configSc
             type?: undefined;
             checked?: undefined;
         })[];
-        icon?: undefined;
-        onClick?: undefined;
-    } | {
-        label: string;
-        icon: typeof import("../../components").Export;
-        onClick: () => void;
-        type?: undefined;
-        subMenu?: undefined;
-    } | {
-        label: string;
-        icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
-            muiName: string;
-        };
-        onClick: () => void;
-        type?: undefined;
-        subMenu?: undefined;
     })[];
 } & {
     setSelectedFeature(feature?: import("@apollo-annotation/mst").AnnotationFeature): void;

package/dist/LinearApolloDisplay/stateModel/index.d.ts.map

@@ -1 +1 @@
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