@apollo-annotation/jbrowse-plugin-apollo 0.3.12 → 1.0.0

package/dist/jbrowse-plugin-apollo.umd.production.min.js

@@ -1,2 +1,2 @@
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s.gff_id):e.children&&(s.ID=[e._id]),s.gff_name&&(s.Name=s.gff_name,delete s.gff_name),s.gff_alias&&(s.Alias=s.gff_alias,delete s.gff_alias),s.gff_target&&(s.Target=s.gff_target,delete s.gff_target),s.gff_gap&&(s.Gap=s.gff_gap,delete s.gff_gap),s.gff_derives_from&&(s.Derives_from=s.gff_derives_from,delete s.gff_derives_from),s.gff_note&&(s.Note=s.gff_note,delete s.gff_note),s.gff_dbxref&&(s.Dbxref=s.gff_dbxref,delete s.gff_dbxref),s.gff_is_circular&&(s.Is_circular=s.gff_is_circular,delete s.gff_is_circular),s.gff_ontology_term&&(c.push.apply(c,V(s.gff_ontology_term)),delete s.gff_ontology_term),s["Gene Ontology"]&&(c.push.apply(c,V(s["Gene Ontology"])),delete s["Gene Ontology"]),s["Sequence Ontology"]&&(c.push.apply(c,V(s["Sequence Ontology"])),delete s["Sequence Ontology"]),c.length>0&&(s.Ontology_term=c);var u=null===(i=e.attributes)||void 0===i?void 0:i.gff_score,d=null;return u&&u.length>0&&(u[0]&&(d=Number(u[0]),Number.isNaN(d)&&(d=null)),delete s.gff_score),{start:Number(e.min)+1,end:Number(e.max),seq_id:e.refSeq,source:l,type:e.type,score:d,strand:e.strand?1===e.strand?"+":"-":null,phase:null,attributes:Object.keys(s).length>0?s:null,derived_features:[],child_features:_t(e,null===(a=s.ID)||void 0===a?void 0:a[0])}}))}function _t(e,t,n){if(!e.children)return[];if("mRNA"===e.type){for(var r=[],i=function(e){var t=[];try{t=function(e){if("mRNA"!==e.type)throw new Error('Only features of type "mRNA" or equivalent can calculate CDS locations');if(!e.children)throw new Error("no CDS or exons in mRNA");var t=Object.values(e.children),n=t.filter((function(e){return"CDS"===e.type}));if(0===n.length)throw new Error("no CDS in mRNA");var r,i=[],a=F(n);try{var s=function(){for(var n=r.value,a=n.max,s=n.min,c=[],l=!1,u=[],d=0,A=t;d<A.length;d++){var f=A[d];"exon"===f.type&&u.push({min:f.min,max:f.max})}u.sort((function(e,t){return e.min-t.min}));for(var h=0,g=u;h<g.length;h++){var p=g[h],m=c.at(-1);m&&c.push({min:m.max,max:p.min,type:"intron"});var y,_=K(o.intersection2(s,a,p.min,p.max),2),v=_[0],b=_[1];y=l?1===e.strand?"threePrimeUTR":"fivePrimeUTR":1===e.strand?"fivePrimeUTR":"threePrimeUTR",void 0!==v&&void 0!==b?(l=!0,v===p.min&&b===p.max?c.push({min:v,max:b,phase:0,type:"CDS"}):v===p.min?c.push({min:v,max:b,phase:0,type:"CDS"},{min:b,max:p.max,type:y}):b===p.max?c.push({min:p.min,max:v,type:y},{min:v,max:b,phase:0,type:"CDS"}):c.push({min:p.min,max:v,type:y},{min:v,max:b,phase:0,type:"CDS"},{min:b,max:p.max,type:"fivePrimeUTR"===y?"threePrimeUTR":"fivePrimeUTR"})):c.push({min:p.min,max:p.max,type:y})}c.sort((function(e,t){return e.min-t.min})),-1===e.strand&&c.reverse();var C=0,I=c.map((function(e){if("CDS"!==e.type)return e;var t=C;return C=(3-(e.max-e.min-t+3)%3)%3,q(q({},e),{},{phase:t})}));i.push(I)};for(a.s();!(r=a.n()).done;)s()}catch(e){a.e(e)}finally{a.f()}return i}(e)}catch(e){return[]}return t.map((function(e){return e.filter((function(e){return"CDS"===e.type}))}))}(e),a=0,s=0,c=Object.values(e.children);s<c.length;s++){var l=c[s],u=yt(l,t);if("CDS"===l.type){var d,A=F(i[a]);try{for(A.s();!(d=A.n()).done;){var f=d.value,h=JSON.parse(JSON.stringify(u));if(1!=h.length)throw new Error("Unexpected CDS: ".concat(JSON.stringify(h,null,2)));h[0].start=f.min+1,h[0].end=f.max,h[0].phase=f.phase.toString(),h[0].type=f.type,r.push(h)}}catch(e){A.e(e)}finally{A.f()}a++}else r.push(u)}return r}return Object.values(e.children).map((function(e){return yt(e,t)}))}var vt={ID:"gff_id",Name:"gff_name",Alias:"gff_alias",Parent:"gff_parent",Target:"gff_target",Gap:"gff_gap",Derives_from:"gff_derives_from",Note:"gff_note",Dbxref:"gff_dbxref",Ontology_term:"gff_ontology_term",Is_circular:"gff_is_circular"},bt={gff_id:"ID",gff_name:"Name",gff_alias:"Alias",gff_parent:"Parent",gff_target:"Target",gff_gap:"Gap",gff_derives_from:"Derives_from",gff_note:"Note",gff_dbxref:"Dbxref",gff_ontology_term:"Ontology_term",gff_is_circular:"Is_circular"},Ct={gff_score:"score",gff_source:"source"};function It(e,t){var n=K(e,1)[0],r=n.end,i=n.seq_id,a=n.start,s=n.strand;if(!i)throw new Error("feature does not have seq_id: ".concat(JSON.stringify(n)));if(null===a)throw new Error("feature does not have start: ".concat(JSON.stringify(n)));if(null===r)throw new Error("feature does not have end: ".concat(JSON.stringify(n)));var c=function(e){var t=e.map((function(e){return e.start})).filter((function(e){return null!==e})),n=e.map((function(e){return e.end})).filter((function(e){return null!==e}));return[Math.min.apply(Math,V(t))-1,Math.max.apply(Math,V(n))]}(e),l=K(c,2),u=l[0],d=l[1],A=function(e,t,n){var r={},i=e.filter((function(e){return e.child_features.length>0}));if(i.length>1)throw new Error("Features with multiple locations may not have children");if(e.length>1&&"CDS"!==e[0].type){var a,s=F(e);try{for(s.s();!(a=s.n()).done;){var c=It([a.value],t);r[c._id]=c}}catch(e){s.e(e)}finally{s.f()}return r}if(0!==i.length){var l,u=[],d=[],A=[],f=F(K(i,1)[0].child_features);try{for(f.s();!(l=f.n()).done;){var h=l.value,g=K(h,1)[0];if("exon"===g.type&&d.push(h),"three_prime_UTR"!==g.type&&"five_prime_UTR"!==g.type||A.push(h),"three_prime_UTR"!==g.type&&"five_prime_UTR"!==g.type&&"intron"!==g.type&&"start_codon"!==g.type&&"stop_codon"!==g.type)if("CDS"===g.type)u.push(h);else{var p=It(h,t);r[p._id]=p}}}catch(e){f.e(e)}finally{f.f()}if(u.length>0){var m,y=function(e,t){var n=e.map((function(e){return e.length}));if(n.some((function(e){return e>1})))return e.map((function(e){return It(e,t)}));var r=e.map((function(e){return e[0]})).filter((function(e){return null!==e.start&&null!==e.end})).sort((function(e,t){return e.start-t.start}));if(!r.some((function(e,t){var n=r.at(t+1);return!!n&&o.doesIntersect2(e.start,e.end,n.start,n.end)})))return[It(r,t)];var i,a=e.map((function(e){return e[0]})),s=[],c=F(a);try{var l=function(){var e=i.value,t=s.at(-1);if(!t)return s.push([e]),1;t.some((function(t){return o.doesIntersect2(t.start,t.end,e.start,e.end)}))?s.push([e]):t.push(e)};for(c.s();!(i=c.n()).done;)l()}catch(e){c.e(e)}finally{c.f()}return s.map((function(e){return It(e,t)}))}(u,t),_=F(y);try{for(_.s();!(m=_.n()).done;){var v=m.value;r[v._id]=v}}catch(e){_.e(e)}finally{_.f()}var b,C=function(e,t,n,r,o){var i,a=[],s=F(n);try{for(s.s();!(i=s.n()).done;){var c,l=F(i.value);try{for(l.s();!(c=l.n()).done;){var u=c.value;if(!u.start||!u.end)throw new Error("UTR has undefined start and/or 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ut).toHexString(),refSeq:r,type:"exon",min:y.start-1,max:y.end,strand:I};if(0===p){var E,x=F(a);try{for(x.s();!(E=x.n()).done;){var S=E.value;if(S.max>w.min)break;S.max===w.min?w.min=S.min:f.push(S)}}catch(e){x.e(e)}finally{x.f()}}if(p===g.length-1){var B,k=F(a);try{for(k.s();!(B=k.n()).done;){var Q=B.value;Q.min<w.max||(Q.min===w.max?w.max=Q.max:f.push(Q))}}catch(e){k.e(e)}finally{k.f()}}f.push(w)}}}}catch(e){h.e(e)}finally{h.f()}var N=function(e){if(0===e.length)return[];e.sort((function(e,t){return e.min-t.min}));var t=[];t.push(e[0]);for(var n=1;n<e.length;n++){var r=t.at(-1),o=e[n];r&&o.min<=r.max?r.max=Math.max(r.max,o.max):t.push(o)}return t}(f);return N}(u,d,A,y[0].refSeq),I=F(C);try{for(I.s();!(b=I.n()).done;){var w=b.value;r[w._id]=w}}catch(e){I.e(e)}finally{I.f()}}return Object.keys(r).length>0?r:void 0}}(e,t),f=function(e){var t={},n=e.map((function(e){return e.score})).filter((function(e){return null!==e})),r=e.map((function(e){return e.source})).filter((function(e){return null!==e})),o=e.map((function(e){return e.attributes})).filter((function(e){return null!==e}));if(n.length>0){var i=K(n,1)[0];n.length>1&&(i=n.reduce((function(e,t){return e+t}),0)/n.length),t.gff_score=[String(i)]}if(r.length>0){var a=K(r,1)[0];r.length>1&&(a=V(new Set(r)).join(",")),t.gff_source=[a]}if(o.length>0){var s,c=F(o);try{for(c.s();!(s=c.n()).done;)for(var l=0,u=Object.entries(s.value);l<u.length;l++){var d=K(u[l],2),A=d[0],f=d[1];if("Parent"!==A){var h=A in vt?vt[A]:A,g=t[h];if(g){var p=new Set([].concat(V(g),V(f)));t[h]=V(p)}else t[h]=f}}}catch(e){c.e(e)}finally{c.f()}}if(Object.keys(t).length>0)return t}(e),h={_id:(new ut).toHexString(),refSeq:null!=t?t:i,type:wt(e),min:u,max:d};if(s)if("+"===s)h.strand=1;else{if("-"!==s)throw new Error('Unknown strand: "'.concat(s,'"'));h.strand=-1}return A&&(h.children=A),f&&(h.attributes=f),h}function wt(e){var t=K(e,1)[0];if(1===e.length||"CDS"===t.type){var n=t.type;if(!n)throw new Error("feature does not have type: 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e.a(2)}}),e,this,[[2,6,7,8]])}))),function(e){return r.apply(this,arguments)})},{key:"addFeatureIntoDb",value:(n=B(U().m((function e(t,n){var r,o,i,a,s,c,l,u,d,A,f,h,g,p,m,y,_;return U().w((function(e){for(;;)switch(e.n){case 0:if((r=ue.env.INDEXED_IDS)&&(o=r.split(",")),i=this.assembly,a=this.refSeqCache,s=n.featureModel,c=n.refSeqModel,l=n.user,u=K(t,1),d=u[0].seq_id){e.n=1;break}throw new Error("Valid seq_id not found in feature ".concat(JSON.stringify(t)));case 1:if(A=a.get(d)){e.n=6;break}return e.n=2,c.findOne({assembly:i,name:d}).exec();case 2:if(y=f=e.v,!(m=null!==y)){e.n=3;break}m=void 0!==f;case 3:if(!m){e.n=4;break}_=f,e.n=5;break;case 4:_=void 0;case 5:(A=_)&&a.set(d,A);case 6:if(A){e.n=7;break}throw new Error('RefSeq was not found by assembly "'.concat(i,'" and seq_id "').concat(d,'" not found'));case 7:return h=It(t,A._id),g=this.getAllIds(h),p=this.getIndexedIds(h,o),e.n=8,s.create([q(q({allIds:g,indexedIds:p},h),{},{user:l,status:-1})]);case 8:return 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o[i++]=20971520,o[i++]=20971520,s.bits=1,0;for(v=1;v<b&&0===Q[v];v++);for(C<v&&(C=v),E=1,y=1;y<=rn;y++)if(E<<=1,(E-=Q[y])<0)return-1;if(E>0&&(e===sn||1!==b))return-1;for(N[1]=0,y=1;y<rn;y++)N[y+1]=N[y]+Q[y];for(_=0;_<r;_++)0!==t[n+_]&&(a[N[t[n+_]]++]=_);if(e===sn?(B=R=a,f=19):e===cn?(B=un,k-=257,R=dn,D-=257,f=256):(B=An,R=fn,f=-1),S=0,_=0,y=v,A=i,I=C,w=0,u=-1,d=(x=1<<C)-1,e===cn&&x>on||e===ln&&x>an)return 1;for(;;){h=y-w,a[_]<f?(g=0,p=a[_]):a[_]>f?(g=R[D+a[_]],p=B[k+a[_]]):(g=96,p=0),c=1<<y-w,v=l=1<<I;do{o[A+(S>>w)+(l-=c)]=h<<24|g<<16|p|0}while(0!==l);for(c=1<<y-1;S&c;)c>>=1;if(0!==c?(S&=c-1,S+=c):S=0,_++,0==--Q[y]){if(y===b)break;y=t[n+a[_]]}if(y>C&&(S&d)!==u){for(0===w&&(w=C),A+=v,E=1<<(I=y-w);I+w<b&&!((E-=Q[I+w])<=0);)I++,E<<=1;if(x+=1<<I,e===cn&&x>on||e===ln&&x>an)return 1;o[u=S&d]=C<<24|I<<16|A-i|0}}return 0!==S&&(o[A+S]=y-w<<24|64<<16|0),s.bits=C,0}var gn=1,pn=2,mn=-2,yn=12,_n=30;function vn(e){return(e>>>24&255)+(e>>>8&65280)+((65280&e)<<8)+((255&e)<<24)}function bn(){this.mode=0,this.last=!1,this.wrap=0,this.havedict=!1,this.flags=0,this.dmax=0,this.check=0,this.total=0,this.head=null,this.wbits=0,this.wsize=0,this.whave=0,this.wnext=0,this.window=null,this.hold=0,this.bits=0,this.length=0,this.offset=0,this.extra=0,this.lencode=null,this.distcode=null,this.lenbits=0,this.distbits=0,this.ncode=0,this.nlen=0,this.ndist=0,this.have=0,this.next=null,this.lens=Jt(320),this.work=Jt(288),this.lendyn=null,this.distdyn=null,this.sane=0,this.back=0,this.was=0}var Cn,In,wn=!0;function En(e){if(wn){var t;for(Cn=Ut(512),In=Ut(32),t=0;t<144;)e.lens[t++]=8;for(;t<256;)e.lens[t++]=9;for(;t<280;)e.lens[t++]=7;for(;t<288;)e.lens[t++]=8;for(hn(gn,e.lens,0,288,Cn,0,e.work,{bits:9}),t=0;t<32;)e.lens[t++]=5;hn(pn,e.lens,0,32,In,0,e.work,{bits:5}),wn=!1}e.lencode=Cn,e.lenbits=9,e.distcode=In,e.distbits=5}function xn(e,t,n,r){var o,i=e.state;return null===i.window&&(i.wsize=1<<i.wbits,i.wnext=0,i.whave=0,i.window=qt(i.wsize)),r>=i.wsize?(Lt(i.window,t,n-i.wsize,i.wsize,0),i.wnext=0,i.whave=i.wsize):((o=i.wsize-i.wnext)>r&&(o=r),Lt(i.window,t,n-r,o,i.wnext),(r-=o)?(Lt(i.window,t,n-r,r,0),i.wnext=r,i.whave=i.wsize):(i.wnext+=o,i.wnext===i.wsize&&(i.wnext=0),i.whave<i.wsize&&(i.whave+=o))),0}function Sn(e,t){var n,r,o,i,a,s,c,l,u,d,A,f,h,g,p,m,y,_,v,b,C,I,w,E,x=0,S=qt(4),B=[16,17,18,0,8,7,9,6,10,5,11,4,12,3,13,2,14,1,15];if(!e||!e.state||!e.output||!e.input&&0!==e.avail_in)return mn;(n=e.state).mode===yn&&(n.mode=13),a=e.next_out,o=e.output,i=e.next_in,r=e.input,l=n.hold,u=n.bits,d=s=e.avail_in,A=c=e.avail_out,I=0;e:for(;;)switch(n.mode){case 1:if(0===n.wrap){n.mode=13;break}for(;u<16;){if(0===s)break e;s--,l+=r[i++]<<u,u+=8}if(2&n.wrap&&35615===l){n.check=0,S[0]=255&l,S[1]=l>>>8&255,n.check=Zt(n.check,S,2,0),l=0,u=0,n.mode=2;break}if(n.flags=0,n.head&&(n.head.done=!1),!(1&n.wrap)||(((255&l)<<8)+(l>>8))%31){e.msg="incorrect header check",n.mode=_n;break}if(8!=(15&l)){e.msg="unknown compression method",n.mode=_n;break}if(u-=4,C=8+(15&(l>>>=4)),0===n.wbits)n.wbits=C;else if(C>n.wbits){e.msg="invalid window size",n.mode=_n;break}n.dmax=1<<C,e.adler=n.check=1,n.mode=512&l?10:yn,l=0,u=0;break;case 2:for(;u<16;){if(0===s)break e;s--,l+=r[i++]<<u,u+=8}if(n.flags=l,8!=(255&n.flags)){e.msg="unknown compression method",n.mode=_n;break}if(57344&n.flags){e.msg="unknown header flags set",n.mode=_n;break}n.head&&(n.head.text=l>>8&1),512&n.flags&&(S[0]=255&l,S[1]=l>>>8&255,n.check=Zt(n.check,S,2,0)),l=0,u=0,n.mode=3;case 3:for(;u<32;){if(0===s)break e;s--,l+=r[i++]<<u,u+=8}n.head&&(n.head.time=l),512&n.flags&&(S[0]=255&l,S[1]=l>>>8&255,S[2]=l>>>16&255,S[3]=l>>>24&255,n.check=Zt(n.check,S,4,0)),l=0,u=0,n.mode=4;case 4:for(;u<16;){if(0===s)break e;s--,l+=r[i++]<<u,u+=8}n.head&&(n.head.xflags=255&l,n.head.os=l>>8),512&n.flags&&(S[0]=255&l,S[1]=l>>>8&255,n.check=Zt(n.check,S,2,0)),l=0,u=0,n.mode=5;case 5:if(1024&n.flags){for(;u<16;){if(0===s)break e;s--,l+=r[i++]<<u,u+=8}n.length=l,n.head&&(n.head.extra_len=l),512&n.flags&&(S[0]=255&l,S[1]=l>>>8&255,n.check=Zt(n.check,S,2,0)),l=0,u=0}else n.head&&(n.head.extra=null);n.mode=6;case 6:if(1024&n.flags&&((f=n.length)>s&&(f=s),f&&(n.head&&(C=n.head.extra_len-n.length,n.head.extra||(n.head.extra=new Array(n.head.extra_len)),Lt(n.head.extra,r,i,f,C)),512&n.flags&&(n.check=Zt(n.check,r,f,i)),s-=f,i+=f,n.length-=f),n.length))break e;n.length=0,n.mode=7;case 7:if(2048&n.flags){if(0===s)break e;f=0;do{C=r[i+f++],n.head&&C&&n.length<65536&&(n.head.name+=String.fromCharCode(C))}while(C&&f<s);if(512&n.flags&&(n.check=Zt(n.check,r,f,i)),s-=f,i+=f,C)break e}else n.head&&(n.head.name=null);n.length=0,n.mode=8;case 8:if(4096&n.flags){if(0===s)break e;f=0;do{C=r[i+f++],n.head&&C&&n.length<65536&&(n.head.comment+=String.fromCharCode(C))}while(C&&f<s);if(512&n.flags&&(n.check=Zt(n.check,r,f,i)),s-=f,i+=f,C)break e}else n.head&&(n.head.comment=null);n.mode=9;case 9:if(512&n.flags){for(;u<16;){if(0===s)break e;s--,l+=r[i++]<<u,u+=8}if(l!==(65535&n.check)){e.msg="header crc mismatch",n.mode=_n;break}l=0,u=0}n.head&&(n.head.hcrc=n.flags>>9&1,n.head.done=!0),e.adler=n.check=0,n.mode=yn;break;case 10:for(;u<32;){if(0===s)break e;s--,l+=r[i++]<<u,u+=8}e.adler=n.check=vn(l),l=0,u=0,n.mode=11;case 11:if(0===n.havedict)return e.next_out=a,e.avail_out=c,e.next_in=i,e.avail_in=s,n.hold=l,n.bits=u,2;e.adler=n.check=1,n.mode=yn;case yn:case 13:if(n.last){l>>>=7&u,u-=7&u,n.mode=27;break}for(;u<3;){if(0===s)break e;s--,l+=r[i++]<<u,u+=8}switch(n.last=1&l,u-=1,3&(l>>>=1)){case 0:n.mode=14;break;case 1:En(n),n.mode=20;break;case 2:n.mode=17;break;case 3:e.msg="invalid block type",n.mode=_n}l>>>=2,u-=2;break;case 14:for(l>>>=7&u,u-=7&u;u<32;){if(0===s)break e;s--,l+=r[i++]<<u,u+=8}if((65535&l)!=(l>>>16^65535)){e.msg="invalid stored block lengths",n.mode=_n;break}n.length=65535&l,l=0,u=0,n.mode=15;case 15:n.mode=16;case 16:if(f=n.length){if(f>s&&(f=s),f>c&&(f=c),0===f)break e;Lt(o,r,i,f,a),s-=f,i+=f,c-=f,a+=f,n.length-=f;break}n.mode=yn;break;case 17:for(;u<14;){if(0===s)break e;s--,l+=r[i++]<<u,u+=8}if(n.nlen=257+(31&l),u-=5,n.ndist=1+(31&(l>>>=5)),u-=5,n.ncode=4+(15&(l>>>=5)),l>>>=4,u-=4,n.nlen>286||n.ndist>30){e.msg="too many length or distance symbols",n.mode=_n;break}n.have=0,n.mode=18;case 18:for(;n.have<n.ncode;){for(;u<3;){if(0===s)break e;s--,l+=r[i++]<<u,u+=8}n.lens[B[n.have++]]=7&l,l>>>=3,u-=3}for(;n.have<19;)n.lens[B[n.have++]]=0;if(n.lencode=n.lendyn,n.lenbits=7,I=hn(0,n.lens,0,19,n.lencode,0,n.work,w={bits:n.lenbits}),n.lenbits=w.bits,I){e.msg="invalid code lengths set",n.mode=_n;break}n.have=0,n.mode=19;case 19:for(;n.have<n.nlen+n.ndist;){for(;m=(x=n.lencode[l&(1<<n.lenbits)-1])>>>16&255,y=65535&x,!((p=x>>>24)<=u);){if(0===s)break e;s--,l+=r[i++]<<u,u+=8}if(y<16)l>>>=p,u-=p,n.lens[n.have++]=y;else{if(16===y){for(E=p+2;u<E;){if(0===s)break e;s--,l+=r[i++]<<u,u+=8}if(l>>>=p,u-=p,0===n.have){e.msg="invalid bit length repeat",n.mode=_n;break}C=n.lens[n.have-1],f=3+(3&l),l>>>=2,u-=2}else if(17===y){for(E=p+3;u<E;){if(0===s)break e;s--,l+=r[i++]<<u,u+=8}u-=p,C=0,f=3+(7&(l>>>=p)),l>>>=3,u-=3}else{for(E=p+7;u<E;){if(0===s)break e;s--,l+=r[i++]<<u,u+=8}u-=p,C=0,f=11+(127&(l>>>=p)),l>>>=7,u-=7}if(n.have+f>n.nlen+n.ndist){e.msg="invalid bit length repeat",n.mode=_n;break}for(;f--;)n.lens[n.have++]=C}}if(n.mode===_n)break;if(0===n.lens[256]){e.msg="invalid code -- missing end-of-block",n.mode=_n;break}if(n.lenbits=9,I=hn(gn,n.lens,0,n.nlen,n.lencode,0,n.work,w={bits:n.lenbits}),n.lenbits=w.bits,I){e.msg="invalid literal/lengths set",n.mode=_n;break}if(n.distbits=6,n.distcode=n.distdyn,I=hn(pn,n.lens,n.nlen,n.ndist,n.distcode,0,n.work,w={bits:n.distbits}),n.distbits=w.bits,I){e.msg="invalid distances set",n.mode=_n;break}n.mode=20;case 20:n.mode=21;case 21:if(s>=6&&c>=258){e.next_out=a,e.avail_out=c,e.next_in=i,e.avail_in=s,n.hold=l,n.bits=u,nn(e,A),a=e.next_out,o=e.output,c=e.avail_out,i=e.next_in,r=e.input,s=e.avail_in,l=n.hold,u=n.bits,n.mode===yn&&(n.back=-1);break}for(n.back=0;m=(x=n.lencode[l&(1<<n.lenbits)-1])>>>16&255,y=65535&x,!((p=x>>>24)<=u);){if(0===s)break e;s--,l+=r[i++]<<u,u+=8}if(m&&0==(240&m)){for(_=p,v=m,b=y;m=(x=n.lencode[b+((l&(1<<_+v)-1)>>_)])>>>16&255,y=65535&x,!(_+(p=x>>>24)<=u);){if(0===s)break e;s--,l+=r[i++]<<u,u+=8}l>>>=_,u-=_,n.back+=_}if(l>>>=p,u-=p,n.back+=p,n.length=y,0===m){n.mode=26;break}if(32&m){n.back=-1,n.mode=yn;break}if(64&m){e.msg="invalid literal/length code",n.mode=_n;break}n.extra=15&m,n.mode=22;case 22:if(n.extra){for(E=n.extra;u<E;){if(0===s)break e;s--,l+=r[i++]<<u,u+=8}n.length+=l&(1<<n.extra)-1,l>>>=n.extra,u-=n.extra,n.back+=n.extra}n.was=n.length,n.mode=23;case 23:for(;m=(x=n.distcode[l&(1<<n.distbits)-1])>>>16&255,y=65535&x,!((p=x>>>24)<=u);){if(0===s)break e;s--,l+=r[i++]<<u,u+=8}if(0==(240&m)){for(_=p,v=m,b=y;m=(x=n.distcode[b+((l&(1<<_+v)-1)>>_)])>>>16&255,y=65535&x,!(_+(p=x>>>24)<=u);){if(0===s)break e;s--,l+=r[i++]<<u,u+=8}l>>>=_,u-=_,n.back+=_}if(l>>>=p,u-=p,n.back+=p,64&m){e.msg="invalid distance code",n.mode=_n;break}n.offset=y,n.extra=15&m,n.mode=24;case 24:if(n.extra){for(E=n.extra;u<E;){if(0===s)break e;s--,l+=r[i++]<<u,u+=8}n.offset+=l&(1<<n.extra)-1,l>>>=n.extra,u-=n.extra,n.back+=n.extra}if(n.offset>n.dmax){e.msg="invalid distance too far back",n.mode=_n;break}n.mode=25;case 25:if(0===c)break e;if(n.offset>(f=A-c)){if((f=n.offset-f)>n.whave&&n.sane){e.msg="invalid distance too far back",n.mode=_n;break}h=f>n.wnext?n.wsize-(f-=n.wnext):n.wnext-f,f>n.length&&(f=n.length),g=n.window}else g=o,h=a-n.offset,f=n.length;f>c&&(f=c),c-=f,n.length-=f;do{o[a++]=g[h++]}while(--f);0===n.length&&(n.mode=21);break;case 26:if(0===c)break e;o[a++]=n.length,c--,n.mode=21;break;case 27:if(n.wrap){for(;u<32;){if(0===s)break e;s--,l|=r[i++]<<u,u+=8}if(e.total_out+=A-=c,n.total+=A,A&&(e.adler=n.check=n.flags?Zt(n.check,o,A,a-A):$t(n.check,o,A,a-A)),A=c,(n.flags?l:vn(l))!==n.check){e.msg="incorrect data check",n.mode=_n;break}l=0,u=0}n.mode=28;case 28:if(n.wrap&&n.flags){for(;u<32;){if(0===s)break e;s--,l+=r[i++]<<u,u+=8}if(l!==(4294967295&n.total)){e.msg="incorrect length check",n.mode=_n;break}l=0,u=0}n.mode=29;case 29:I=1;break e;case _n:I=-3;break e;case 31:return-4;default:return mn}return e.next_out=a,e.avail_out=c,e.next_in=i,e.avail_in=s,n.hold=l,n.bits=u,(n.wsize||A!==e.avail_out&&n.mode<_n&&(n.mode<27||4!==t))&&xn(e,e.output,e.next_out,A-e.avail_out),A-=e.avail_out,e.total_in+=d-=e.avail_in,e.total_out+=A,n.total+=A,n.wrap&&A&&(e.adler=n.check=n.flags?Zt(n.check,o,A,e.next_out-A):$t(n.check,o,A,e.next_out-A)),e.data_type=n.bits+(n.last?64:0)+(n.mode===yn?128:0)+(20===n.mode||15===n.mode?256:0),(0===d&&0===A||4===t)&&0===I&&(I=-5),I}function Bn(e,t){var n,r=t.length;return 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To use it, please refresh the page.')}},{key:"toJSON",value:function(){var e=this.assembly,t=this.changes,n=this.typeName;if(1===t.length){var r=K(t,1)[0];return{typeName:n,assembly:e,assemblyName:r.assemblyName,fileIds:r.fileIds}}return{typeName:n,assembly:e,changes:t}}},{key:"executeOnServer",value:(a=B(U().m((function e(t){var n,r,o,i,a;return U().w((function(e){for(;;)switch(e.p=e.n){case 0:n=F(this.changes),e.p=1,n.s();case 2:if((r=n.n()).done){e.n=4;break}return i=(o=r.value).assemblyName,a=o.fileIds,e.n=3,"gzi"in a?this.executeOnServerIndexed(t,i,a):this.executeOnServerFasta(t,i,a.fa);case 3:e.n=2;break;case 4:e.n=6;break;case 5:e.p=5,n.e(e.v);case 6:return e.p=6,n.f(),e.f(6);case 7:return e.a(2)}}),e,this,[[1,5,6,7]])}))),function(e){return a.apply(this,arguments)})},{key:"executeOnServerIndexed",value:(i=B(U().m((function e(t,n,r){var o,i,a,s,c,l,u,d,A,f,h,g,p,m,y,_,v,b,C,I,w,E,x,S,B,k,Q,N,R,D,F;return U().w((function(e){for(;;)switch(e.n){case 0:if(s=(a=ue.env.CHUNK_SIZE)&&Number(a),ue.env.FILE_UPLOAD_FOLDER){e.n=1;break}throw new Error("No FILE_UPLOAD_FOLDER found in .env file");case 1:return c=r.fa,l=r.fai,u=r.gzi,d=t.assemblyModel,A=t.checkModel,f=t.fileModel,h=t.filesService,g=t.refSeqModel,p=t.user,e.n=2,f.findById(c);case 2:if(null==(m=e.v)?void 0:m.checksum){e.n=3;break}throw new Error("No checksum for file document ".concat(null==m?void 0:m.id));case 3:return e.n=4,f.findById(l);case 4:if(null==(y=e.v)?void 0:y.checksum){e.n=5;break}throw new Error("No checksum for file document ".concat(null==y?void 0:y.id));case 5:return e.n=6,f.findById(u);case 6:if(null==(_=e.v)?void 0:_.checksum){e.n=7;break}throw new Error("No checksum for file document ".concat(null==_?void 0:_.id));case 7:return v=h.getFileHandle(m),b=h.getFileHandle(y),C=h.getFileHandle(_),I=new xr({fasta:v,fai:b,gzi:C}),e.n=8,I.getSequenceSizes();case 8:return w=e.v,e.n=9,Promise.all([v.close(),b.close(),C.close()]);case 9:return e.n=10,d.findOne({name:n}).exec();case 10:if(!e.v){e.n=11;break}throw new Error('Assembly "'.concat(n,'" already exists'));case 11:return e.n=12,A.find({isDefault:!0}).exec();case 12:return E=e.v.map((function(e){return e._id.toHexString()})),e.n=13,d.create([{_id:this.assembly,name:n,user:p,status:-1,fileIds:r,checks:E}]);case 13:x=K(e.v,1),S=x[0],null===(o=(i=this.logger).debug)||void 0===o||o.call(i,'Added new assembly "'.concat(n,'", docId "').concat(S._id,'"')),D=H(w);case 14:if((F=D()).done){e.n=16;break}return B=F.value,e.n=15,g.create([q(q({name:B,assembly:S._id,length:w[B]},s?{chunkSize:s}:null),{},{user:p,status:-1})]);case 15:N=K(e.v,1),R=N[0],null===(k=(Q=this.logger).debug)||void 0===k||k.call(Q,'Added new refSeq "'.concat(B,'", docId "').concat(R._id,'"')),e.n=14;break;case 16:return e.a(2)}}),e,this)}))),function(e,t,n){return i.apply(this,arguments)})},{key:"executeOnServerFasta",value:(o=B(U().m((function e(t,n,r){var o,i,a,s,c,l,u,d,A,f,h,g,p,m;return U().w((function(e){for(;;)switch(e.n){case 0:return u=t.assemblyModel,d=t.checkModel,A=t.fileModel,f=t.user,e.n=1,A.findById(r).exec();case 1:if(h=e.v){e.n=2;break}throw new Error('File "'.concat(r,'" not found in Mongo'));case 2:return null===(o=(i=this.logger).debug)||void 0===o||o.call(i,'FileId "'.concat(r,'", checksum "').concat(h.checksum,'"')),e.n=3,u.findOne({name:n}).exec();case 3:if(!e.v){e.n=4;break}throw new Error('Assembly "'.concat(n,'" already exists'));case 4:return e.n=5,d.find({default:!0}).exec();case 5:return g=e.v.map((function(e){return e._id.toHexString()})),e.n=6,u.create([{_id:this.assembly,name:n,user:f,status:-1,fileIds:{fa:r},checks:g}]);case 6:return p=K(e.v,1),m=p[0],null===(a=(s=this.logger).debug)||void 0===a||a.call(s,'Added new assembly "'.concat(n,'", docId "').concat(m._id,'"')),null===(c=(l=this.logger).debug)||void 0===c||c.call(l,'File type: "'.concat(h.type,'", assemblyId: "').concat(m._id,'"')),e.n=7,this.addRefSeqIntoDb(h,m._id.toString(),t);case 7:return e.a(2)}}),e,this)}))),function(e,t,n){return o.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(r=B(U().m((function e(t){return U().w((function(e){for(;;)switch(e.n){case 0:throw new Error("executeOnLocalGFF3 not implemented");case 1:return e.a(2)}}),e)}))),function(e){return r.apply(this,arguments)})},{key:"executeOnClient",value:(n=B(U().m((function e(t){return U().w((function(e){for(;;)if(0===e.n)return e.a(2)}),e)}))),function(e){return n.apply(this,arguments)})},{key:"getInverse",value:function(){return new t({typeName:this.typeName,changes:this.changes,assembly:this.assembly},{logger:this.logger})}}]);var n,r,o,i,a}(Et),kr=function(e){function t(e,n){var r;return N(this,t),T(r=Q(this,t,[e,n]),"typeName","DeleteFeatureChange"),T(r,"changes",void 0),r.changes="changes"in e?e.changes:[e],r}return O(t,e),D(t,[{key:"notification",get:function(){return"Feature deleted successfully"}},{key:"toJSON",value:function(){var e=this.assembly,t=this.changedIds,n=this.changes,r=this.typeName;if(1===n.length){var o=K(n,1)[0];return{typeName:r,changedIds:t,assembly:e,deletedFeature:o.deletedFeature,parentFeatureId:o.parentFeatureId}}return{typeName:r,changedIds:t,assembly:e,changes:n}}},{key:"executeOnServer",value:(o=B(U().m((function e(t){var n,r,o,i,a,s,c,l,u,d=this;return U().w((function(e){for(;;)switch(e.p=e.n){case 0:n=t.featureModel,r=t.session,o=this.changes,i=this.logger,(a=ue.env.INDEXED_IDS)&&(s=a.split(",")),c=F(o),e.p=1,u=U().m((function e(){var t,o,a,c,u,A,f,h,g,p,m;return U().w((function(e){for(;;)switch(e.p=e.n){case 0:return a=(o=l.value).deletedFeature,c=o.parentFeatureId,e.n=1,n.findOne({allIds:a._id}).session(r).exec();case 1:if(u=e.v){e.n=2;break}throw A="*** ERROR: The following featureId was not found in database ='".concat(a._id,"'"),i.error(A),new Error(A);case 2:if(!u._id.equals(a._id)){e.n=5;break}if(!c){e.n=3;break}throw new Error('Feature "'.concat(a._id,'" is top-level, but received a parent feature ID'));case 3:return e.n=4,n.findByIdAndDelete(u._id);case 4:return null===(f=i.debug)||void 0===f||f.call(i,'Feature "'.concat(a._id,'" deleted from document "').concat(u._id,'". Whole document deleted.')),e.a(2,1);case 5:return(h=Qr(u,a._id,d)).push(a._id),u.allIds=u.allIds.filter((function(e){return!h.includes(e)})),g=d.getIndexedIds(u,s),u.indexedIds?g.length>0?u.indexedIds=g:delete u.indexedIds:g.length>0&&(u.indexedIds=g),u.markModified("children"),e.p=6,e.n=7,u.save();case 7:e.n=9;break;case 8:throw e.p=8,m=e.v,null===(p=i.debug)||void 0===p||p.call(i,"*** FAILED: ".concat(m)),m;case 9:null===(t=i.debug)||void 0===t||t.call(i,'Feature "'.concat(a._id,'" deleted from document "').concat(u._id,'"'));case 10:return e.a(2)}}),e,null,[[6,8]])})),c.s();case 2:if((l=c.n()).done){e.n=5;break}return e.d(Y(u()),3);case 3:if(!e.v){e.n=4;break}return e.a(3,4);case 4:e.n=2;break;case 5:e.n=7;break;case 6:e.p=6,c.e(e.v);case 7:return e.p=7,c.f(),e.f(7);case 8:return e.a(2)}}),e,this,[[1,6,7,8]])}))),function(e){return o.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(r=B(U().m((function e(t){return U().w((function(e){for(;;)switch(e.n){case 0:throw new 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e,t=this.assembly,n=this.changes,r=this.logger,o=V(this.changedIds).reverse(),i=V(n).reverse().map((function(e){return{addedFeature:e.deletedFeature,parentFeatureId:e.parentFeatureId}}));return null===(e=r.debug)||void 0===e||e.call(r,"INVERSE CHANGE '".concat(JSON.stringify(i),"'")),new Nr({changedIds:o,typeName:"AddFeatureChange",changes:i,assembly:t},{logger:r})}}]);var n,r,o}(pt);function Qr(e,t,n){if(!e.children)throw new Error("Feature ".concat(e._id," has no children"));var r=e._id,o=e.children,i=o.get(t);if(i){var a=n.getChildFeatureIds(i);return o.delete(t),a}var s,c=F(o);try{for(c.s();!(s=c.n()).done;){var l=K(s.value,2)[1];try{return Qr(l,t,n)}catch(e){}}}catch(e){c.e(e)}finally{c.f()}throw new Error('Feature "'.concat(t,'" not found in ').concat(r))}var Nr=function(e){function t(e,n){var r;return N(this,t),T(r=Q(this,t,[e,n]),"typeName","AddFeatureChange"),T(r,"changes",void 0),r.changes="changes"in e?e.changes:[e],r}return O(t,e),D(t,[{key:"notification",get:function(){return"Feature added successfully"}},{key:"toJSON",value:function(){var e=this.assembly,t=this.changedIds,n=this.changes,r=this.typeName;if(1===n.length){var o=K(n,1)[0];return{typeName:r,changedIds:t,assembly:e,addedFeature:o.addedFeature,parentFeatureId:o.parentFeatureId,copyFeature:o.copyFeature,allIds:o.allIds}}return{typeName:r,changedIds:t,assembly:e,changes:n}}},{key:"executeOnServer",value:(o=B(U().m((function e(t){var n,r,o,i,a,s,c,l,u,d,A,f,h,g,p,m,y,_,v,b,C,I,w,E,x,S,B,k,Q,N,R,D,T,j,M,O,L,P,J;return U().w((function(e){for(;;)switch(e.p=e.n){case 0:return o=t.assemblyModel,i=t.featureModel,a=t.refSeqModel,s=t.session,c=t.user,l=this.assembly,u=this.changes,d=this.logger,e.n=1,o.findById(l).session(s).exec();case 1:if(e.v){e.n=2;break}throw A='*** ERROR: Assembly with id "'.concat(l,'" not found'),d.error(A),new Error(A);case 2:f=0,null===(n=d.debug)||void 0===n||n.call(d,"changes: ".concat(JSON.stringify(u))),(h=ue.env.INDEXED_IDS)&&(g=h.split(",")),p=F(u),e.p=3,p.s();case 4:if((m=p.n()).done){e.n=17;break}return _=m.value,null===(y=d.debug)||void 0===y||y.call(d,"change: ".concat(JSON.stringify(_))),b=_.allIds,C=_.copyFeature,I=_.parentFeatureId,w=(v=_.addedFeature)._id,E=v.refSeq,e.n=5,a.findById(E).session(s).exec();case 5:if(e.v){e.n=6;break}throw new Error('RefSeq was not found by assembly "'.concat(l,'" and seq_id "').concat(E,'" not found'));case 6:if(!C){e.n=8;break}return S=this.getIndexedIds(v,g),e.n=7,i.create([q(q({},v),{},{allIds:b,indexedIds:S,status:-1,user:c})],{session:s});case 7:B=K(e.v,1),k=B[0],null===(x=d.debug)||void 0===x||x.call(d,'Copied feature, docId "'.concat(k._id,'" to assembly "').concat(l,'"')),f++,e.n=15;break;case 8:if(Q=this.getIndexedIds(v,g),!I){e.n=13;break}return e.n=9,i.findOne({allIds:I}).session(s).exec();case 9:if(D=e.v){e.n=10;break}throw new Error('Could not find feature with ID "'.concat(I,'"'));case 10:if(T=this.getFeatureFromId(D,I)){e.n=11;break}throw new Error('Could not find feature with ID "'.concat(I,'" in feature "').concat(D._id,'"'));case 11:return this.addChild(T,v),j=this.getChildFeatureIds(v),(N=D.allIds).push.apply(N,[w].concat(V(j))),Q.length>0&&!D.indexedIds&&(D.indexedIds=[]),null===(R=D.indexedIds)||void 0===R||R.push.apply(R,V(Q)),e.n=12,D.save();case 12:e.n=15;break;case 13:return O=this.getChildFeatureIds(v),L=[w].concat(V(O)),e.n=14,i.create([q({allIds:L,indexedIds:Q,status:0},v)],{session:s});case 14:P=K(e.v,1),J=P[0],null===(M=d.verbose)||void 0===M||M.call(d,'Added docId "'.concat(J._id,'"'));case 15:f++;case 16:e.n=4;break;case 17:e.n=19;break;case 18:e.p=18,p.e(e.v);case 19:return e.p=19,p.f(),e.f(19);case 20:null===(r=d.debug)||void 0===r||r.call(d,"Added ".concat(f," new feature(s) into database."));case 21:return e.a(2)}}),e,this,[[3,18,19,20]])}))),function(e){return o.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(r=B(U().m((function e(t){return U().w((function(e){for(;;)switch(e.n){case 0:throw new Error("executeOnLocalGFF3 not implemented");case 1:return e.a(2)}}),e)}))),function(e){return r.apply(this,arguments)})},{key:"executeOnClient",value:(n=B(U().m((function e(t){var n,r,o,i,a,s,c;return U().w((function(e){for(;;)switch(e.p=e.n){case 0:if(t){e.n=1;break}throw new Error("No data store");case 1:n=this.assembly,r=F(this.changes),e.p=2,r.s();case 3:if((o=r.n()).done){e.n=8;break}if(a=(i=o.value).addedFeature,!(s=i.parentFeatureId)){e.n=6;break}if(c=t.getFeature(s)){e.n=5;break}return e.n=4,t.loadFeatures([{assemblyName:n,refName:a.refSeq,start:a.min,end:a.max}]);case 4:if(c=t.getFeature(s)){e.n=5;break}throw new Error('Could not find parent feature "'.concat(s,'"'));case 5:c.attributes.get("_id")||c.setAttribute("_id",[c._id]),c.addChild(a),e.n=7;break;case 6:t.addFeature(n,a);case 7:e.n=3;break;case 8:e.n=10;break;case 9:e.p=9,r.e(e.v);case 10:return e.p=10,r.f(),e.f(10);case 11:return e.a(2)}}),e,this,[[2,9,10,11]])}))),function(e){return n.apply(this,arguments)})},{key:"getInverse",value:function(){var e=this.assembly,t=this.changes,n=this.logger,r=V(this.changedIds).reverse(),o=V(t).reverse().map((function(e){return{deletedFeature:e.addedFeature,parentFeatureId:e.parentFeatureId}}));return new kr({changedIds:r,typeName:"DeleteFeatureChange",changes:o,assembly:e},{logger:n})}}]);var n,r,o}(pt),Rr=function(e){function t(e,n){var r,o;return N(this,t),T(o=Q(this,t,[e,n]),"typeName","AddFeaturesFromFileChange"),T(o,"changes",void 0),T(o,"deleteExistingFeatures",!1),o.deleteExistingFeatures=null!==(r=e.deleteExistingFeatures)&&void 0!==r&&r,o.changes="changes"in e?e.changes:[e],o}return O(t,e),D(t,[{key:"notification",get:function(){return"Features have been added. To see them, please refresh the page."}},{key:"toJSON",value:function(){var e=this.assembly,t=this.changes,n=this.deleteExistingFeatures,r=this.typeName;return 1===t.length?{typeName:r,assembly:e,fileId:K(t,1)[0].fileId,deleteExistingFeatures:n}:{typeName:r,assembly:e,changes:t,deleteExistingFeatures:n}}},{key:"executeOnServer",value:(o=B(U().m((function e(t){var n,r,o,i,a,s,c,l,u,d,A,f,h,g=this;return U().w((function(e){for(;;)switch(e.p=e.n){case 0:if(r=t.fileModel,o=t.filesService,i=this.changes,a=this.logger,!this.deleteExistingFeatures){e.n=1;break}return e.n=1,this.removeExistingFeatures(t);case 1:s=F(i),e.p=2,l=U().m((function e(){var n,i,s,l,p,m,y,_,v,b,C,I,w,x,S,B,k;return U().w((function(e){for(;;)switch(e.p=e.n){case 0:if(s=(i=c.value).fileId,l=i.parseOptions,ue.env.FILE_UPLOAD_FOLDER){e.n=1;break}throw new Error("No FILE_UPLOAD_FOLDER found in .env file");case 1:return e.n=2,r.findById(s).exec();case 2:if(p=e.v){e.n=3;break}throw new Error('File "'.concat(s,'" not found in Mongo'));case 3:null===(n=a.debug)||void 0===n||n.call(a,'FileId "'.concat(s,'", checksum "').concat(p.checksum,'"')),m=0,y=function(e){m<=99&&(a.warn("Error parsing or adding feature"),a.warn(e),99===m&&a.warn("Reached 100 feature errors, omitting further warnings from log")),m++},b=void 0===(v=(_=null!=l?l:{}).bufferSize)?1e4:v,I=void 0===(C=_.strict)||C,w=o.parseGFF3(o.getFileStream(p),{bufferSize:b,errorCallback:I?void 0:y}),x=0,u=!1,d=!1,e.p=4,f=E(w);case 5:return e.n=6,f.next();case 6:if(!(u=!(h=e.v).done)){e.n=13;break}return S=h.value,e.p=7,e.n=8,g.addFeatureIntoDb(S,t);case 8:e.n=11;break;case 9:if(e.p=9,k=e.v,!I&&0!==x){e.n=10;break}throw k;case 10:y(k);case 11:++x%1e3==0&&(null===(B=a.debug)||void 0===B||B.call(a,"Processed ".concat(x," features")));case 12:u=!1,e.n=5;break;case 13:e.n=15;break;case 14:e.p=14,d=!0,A=e.v;case 15:if(e.p=15,e.p=16,!u||null==f.return){e.n=17;break}return e.n=17,f.return();case 17:if(e.p=17,!d){e.n=18;break}throw A;case 18:return e.f(17);case 19:return e.f(15);case 20:return e.a(2)}}),e,null,[[16,,17,19],[7,9],[4,14,15,20]])})),s.s();case 3:if((c=s.n()).done){e.n=5;break}return e.d(Y(l()),4);case 4:e.n=3;break;case 5:e.n=7;break;case 6:e.p=6,s.e(e.v);case 7:return e.p=7,s.f(),e.f(7);case 8:null===(n=a.debug)||void 0===n||n.call(a,"New features added into database!");case 9:return e.a(2)}}),e,this,[[2,6,7,8]])}))),function(e){return o.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(r=B(U().m((function e(t){return U().w((function(e){for(;;)switch(e.n){case 0:throw new Error("executeOnLocalGFF3 not implemented");case 1:return e.a(2)}}),e)}))),function(e){return r.apply(this,arguments)})},{key:"executeOnClient",value:(n=B(U().m((function e(t){return U().w((function(e){for(;;)if(0===e.n)return e.a(2)}),e)}))),function(e){return n.apply(this,arguments)})},{key:"getInverse",value:function(){return new t({typeName:this.typeName,changes:this.changes,assembly:this.assembly},{logger:this.logger})}}]);var n,r,o}(Et),Dr=function(e){function t(e,n){var r;return N(this,t),T(r=Q(this,t,[e,n]),"typeName","AddRefSeqAliasesChange"),T(r,"refSeqAliases",void 0),r.refSeqAliases=e.refSeqAliases,r}return O(t,e),D(t,[{key:"executeOnClient",value:function(e){var t,n=o.getSession(e).assemblyManager.get(this.assembly);if(!n)throw new Error("assembly ".concat(this.assembly," not found"));var r,i=null!==(t=n.refNameAliases)&&void 0!==t?t:{},a=F(this.refSeqAliases);try{for(a.s();!(r=a.n()).done;){var s,c=r.value,l=c.refName,u=F(c.aliases);try{for(u.s();!(s=u.n()).done;)i[s.value]=l}catch(e){u.e(e)}finally{u.f()}}}catch(e){a.e(e)}finally{a.f()}return n.setRefNameAliases(i),Promise.resolve()}},{key:"getInverse",value:function(){throw new Error("Method not implemented.")}},{key:"toJSON",value:function(){return{assembly:this.assembly,typeName:this.typeName,refSeqAliases:this.refSeqAliases}}},{key:"executeOnServer",value:(n=B(U().m((function e(t){var n,r,o,i,a,s,c,l,u,d;return U().w((function(e){for(;;)switch(e.p=e.n){case 0:n=t.refSeqModel,r=t.session,o=this.assembly,i=this.logger,a=F(this.refSeqAliases),e.p=1,a.s();case 2:if((s=a.n()).done){e.n=4;break}return l=s.value,null===(c=i.debug)||void 0===c||c.call(i,"Updating Refname alias for assembly: ".concat(o,", refSeqAlias: ").concat(JSON.stringify(l))),u=l.aliases,d=l.refName,e.n=3,n.updateOne({assembly:o,name:d},{$set:{aliases:u}}).session(r);case 3:e.n=2;break;case 4:e.n=6;break;case 5:e.p=5,a.e(e.v);case 6:return e.p=6,a.f(),e.f(6);case 7:return e.a(2)}}),e,this,[[1,5,6,7]])}))),function(e){return n.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:function(e){throw new Error("Method not implemented.")}},{key:"notification",get:function(){return"RefSeq aliases have been added."}}]);var n}(ht),Fr=function(e){function t(){var e;N(this,t);for(var n=arguments.length,r=new Array(n),o=0;o<n;o++)r[o]=arguments[o];return T(e=Q(this,t,[].concat(r)),"typeName","DeleteAssemblyChange"),e}return O(t,e),D(t,[{key:"notification",get:function(){return'Assembly "'.concat(this.assembly,'" deleted successfully.')}},{key:"toJSON",value:function(){return{typeName:this.typeName,assembly:this.assembly}}},{key:"executeOnServer",value:(i=B(U().m((function e(t){var n,r,o,i,a,s,c,l,u,d;return U().w((function(e){for(;;)switch(e.n){case 0:return r=t.assemblyModel,o=t.featureModel,i=t.refSeqChunkModel,a=t.refSeqModel,s=t.session,c=this.assembly,l=this.logger,e.n=1,r.findById(c).session(s).exec();case 1:if(e.v){e.n=2;break}throw u='*** ERROR: Assembly with id "'.concat(c,'" not found'),l.error(u),new Error(u);case 2:return e.n=3,a.find({assembly:c}).exec();case 3:return d=e.v.map((function(e){return e._id})),e.n=4,i.deleteMany({refSeq:d}).exec();case 4:return e.n=5,o.deleteMany({refSeq:d}).exec();case 5:return e.n=6,a.deleteMany({assembly:c}).exec();case 6:return e.n=7,r.findByIdAndDelete(c).exec();case 7:null===(n=l.debug)||void 0===n||n.call(l,'Assembly "'.concat(c,'" deleted from database.'));case 8:return e.a(2)}}),e,this)}))),function(e){return i.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(r=B(U().m((function e(t){return U().w((function(e){for(;;)switch(e.n){case 0:throw new Error("executeOnLocalGFF3 not implemented");case 1:return e.a(2)}}),e)}))),function(e){return r.apply(this,arguments)})},{key:"executeOnClient",value:(n=B(U().m((function e(t){var n,r,i,a;return U().w((function(e){for(;;)switch(e.n){case 0:if(i=this.assembly,t){e.n=1;break}throw new Error("No data store");case 1:return a=o.getSession(t),t.assemblies.has(i)&&t.deleteAssembly(i),e.n=2,null===(n=a.removeAssembly)||void 0===n?void 0:n.call(a,i);case 2:return e.n=3,null===(r=a.removeSessionAssembly)||void 0===r?void 0:r.call(a,i);case 3:return e.a(2)}}),e,this)}))),function(e){return n.apply(this,arguments)})},{key:"getInverse",value:function(){return new t({typeName:"DeleteAssemblyChange",assembly:this.assembly},{logger:this.logger})}}]);var n,r,i}(ht),Tr=function(e){function t(e,n){var r;return N(this,t),T(r=Q(this,t,[e,n]),"typeName","DeleteUserChange"),T(r,"changes",void 0),T(r,"userId",void 0),r.changes="changes"in e?e.changes:[e],r.userId=e.userId,r}return O(t,e),D(t,[{key:"toJSON",value:function(){return{typeName:this.typeName,userId:this.userId}}},{key:"executeOnServer",value:(o=B(U().m((function e(t){var n,r,o,i,a;return U().w((function(e){for(;;)switch(e.n){case 0:return n=t.session,r=t.userModel,o=this.logger,i=this.userId,e.n=1,r.findOneAndDelete({_id:i}).session(n).exec();case 1:if(e.v){e.n=2;break}throw a='*** ERROR: User with id "'.concat(i,'" not found'),o.error(a),new Error(a);case 2:return e.a(2)}}),e,this)}))),function(e){return o.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(r=B(U().m((function e(t){return U().w((function(e){for(;;)switch(e.n){case 0:throw new Error("executeOnLocalGFF3 not implemented");case 1:return e.a(2)}}),e)}))),function(e){return r.apply(this,arguments)})},{key:"executeOnClient",value:(n=B(U().m((function e(t){return U().w((function(e){for(;;)if(0===e.n)return e.a(2)}),e)}))),function(e){return n.apply(this,arguments)})},{key:"getInverse",value:function(){return new t({typeName:this.typeName,userId:this.userId},{logger:this.logger})}}]);var n,r,o}(ft),jr=function(e){function t(e,n){var r;return N(this,t),T(r=Q(this,t,[e,n]),"typeName","FeatureAttributeChange"),T(r,"changes",void 0),r.changes="changes"in e?e.changes:[e],r}return O(t,e),D(t,[{key:"toJSON",value:function(){var e=this.assembly,t=this.changedIds,n=this.changes,r=this.typeName;if(1===n.length){var o=K(n,1)[0];return{typeName:r,changedIds:t,assembly:e,featureId:o.featureId,oldAttributes:o.oldAttributes,newAttributes:o.newAttributes}}return{typeName:r,changedIds:t,assembly:e,changes:n}}},{key:"executeOnServer",value:(o=B(U().m((function e(t){var n,r,o,i,a,s,c,l,u,d,A,f,h,g,p,m,y,_,v=this;return U().w((function(e){for(;;)switch(e.p=e.n){case 0:n=t.featureModel,r=t.session,i=this.logger,a=[],s=F(o=this.changes),e.p=1,s.s();case 2:if((c=s.n()).done){e.n=7;break}return d=c.value.featureId,e.n=3,n.findOne({allIds:d}).session(r).exec();case 3:if(A=e.v){e.n=4;break}throw f="*** ERROR: The following featureId was not found in database ='".concat(d,"'"),i.error(f),new Error(f);case 4:if(null===(l=i.debug)||void 0===l||l.call(i,"*** Feature found: ".concat(JSON.stringify(A))),h=this.getFeatureFromId(A,d)){e.n=5;break}throw i.error("ERROR when searching feature by featureId"),new Error("ERROR when searching feature by featureId");case 5:null===(u=i.debug)||void 0===u||u.call(i,"*** Found feature: ".concat(JSON.stringify(h))),a.push({feature:h,topLevelFeature:A});case 6:e.n=2;break;case 7:e.n=9;break;case 8:e.p=8,s.e(e.v);case 9:return e.p=9,s.f(),e.f(9);case 10:(g=ue.env.INDEXED_IDS)&&(p=g.split(",")),m=F(o.entries()),e.p=11,_=U().m((function e(){var t,n,r,o,s,c,l,u,d,A,f;return U().w((function(e){for(;;)switch(e.p=e.n){case 0:return r=K(y.value,2),o=r[1].newAttributes,c=(s=a[r[0]]).feature,l=s.topLevelFeature,u=null===(t=p)||void 0===t?void 0:t.some((function(e){var t;return e in o||e in(null!==(t=null==c?void 0:c.attributes)&&void 0!==t?t:{})})),c.attributes=o,u&&(d=v.getIndexedIds(l,p),l.indexedIds=d,l.markModified("indexedIds")),l._id.equals(c._id)?l.markModified("attributes"):l.markModified("children"),e.p=1,e.n=2,l.save();case 2:e.n=4;break;case 3:throw e.p=3,f=e.v,null===(A=i.debug)||void 0===A||A.call(i,"*** FAILED: ".concat(f)),f;case 4:null===(n=i.debug)||void 0===n||n.call(i,"*** Feature attributes modified (added, edited or deleted), docId: ".concat(JSON.stringify(l)));case 5:return e.a(2)}}),e,null,[[1,3]])})),m.s();case 12:if((y=m.n()).done){e.n=14;break}return e.d(Y(_()),13);case 13:e.n=12;break;case 14:e.n=16;break;case 15:e.p=15,m.e(e.v);case 16:return e.p=16,m.f(),e.f(16);case 17:return e.a(2)}}),e,this,[[11,15,16,17],[1,8,9,10]])}))),function(e){return o.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(r=B(U().m((function e(t){return U().w((function(e){for(;;)switch(e.n){case 0:throw new Error("applyToLocalGFF3 not implemented");case 1:return e.a(2)}}),e)}))),function(e){return r.apply(this,arguments)})},{key:"executeOnClient",value:(n=B(U().m((function e(t){var n,r,o,i,a,s;return U().w((function(e){for(;;)switch(e.p=e.n){case 0:if(t){e.n=1;break}throw new Error("No data store");case 1:n=F(this.changedIds.entries()),e.p=2,n.s();case 3:if((r=n.n()).done){e.n=6;break}if(o=K(r.value,2),i=o[0],s=t.getFeature(a=o[1])){e.n=4;break}throw new Error('Could not find feature with identifier "'.concat(a,'"'));case 4:s.setAttributes(new Map(Object.entries(this.changes[i].newAttributes)));case 5:e.n=3;break;case 6:e.n=8;break;case 7:e.p=7,n.e(e.v);case 8:return e.p=8,n.f(),e.f(8);case 9:return e.a(2)}}),e,this,[[2,7,8,9]])}))),function(e){return n.apply(this,arguments)})},{key:"getInverse",value:function(){var e=this.assembly,n=this.changes,r=this.logger;return new t({changedIds:V(this.changedIds).reverse(),typeName:"FeatureAttributeChange",changes:V(n).reverse().map((function(e){return{featureId:e.featureId,oldAttributes:e.newAttributes,newAttributes:e.oldAttributes}})),assembly:e},{logger:r})}}]);var n,r,o}(pt),Mr=["__v","_id","assemblies","configuration","internetAccounts","plugins","tracks"],Or=["hasRole"];function Lr(e){var t,n=e.assemblies,r=e.configuration,o=e.internetAccounts,i=e.plugins,a=e.tracks,s=J(e,Mr);if(n&&(s.assemblies=n.filter((function(e){return"ApolloSequenceAdapter"!==e.sequence.adapter.type}))),null!=r&&null!==(t=r.ApolloPlugin)&&void 0!==t&&t.hasRole){var c=J(r.ApolloPlugin,Or);s.configuration=q(q({},r),{},{ApolloPlugin:c})}return o&&(s.internetAccounts=o.filter((function(e){return"ApolloInternetAccount"!==e.type}))),i&&(s.plugins=i.filter((function(e){return"Apollo"!==e.name}))),a&&(s.tracks=a.filter((function(e){return"ApolloTrack"!==e.type}))),s}var Pr=function(e){function t(e,n){var r;return N(this,t),T(r=Q(this,t,[e,n]),"typeName","ImportJBrowseConfigChange"),T(r,"oldJBrowseConfig",void 0),T(r,"newJBrowseConfig",void 0),r.oldJBrowseConfig=e.oldJBrowseConfig,r.newJBrowseConfig=e.newJBrowseConfig,r}return O(t,e),D(t,[{key:"toJSON",value:function(){return{typeName:this.typeName,oldJBrowseConfig:this.oldJBrowseConfig,newJBrowseConfig:this.newJBrowseConfig}}},{key:"executeOnServer",value:(o=B(U().m((function e(t){var n,r,o,i,a;return U().w((function(e){for(;;)switch(e.n){case 0:return r=t.jbrowseConfigModel,o=this.logger,i=this.newJBrowseConfig,e.n=1,r.deleteMany();case 1:if(i){e.n=2;break}return e.a(2);case 2:return a=Lr(i),e.n=3,r.create(a);case 3:null===(n=o.debug)||void 0===n||n.call(o,"Stored new JBrowse Config");case 4:return e.a(2)}}),e,this)}))),function(e){return o.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(r=B(U().m((function e(t){return U().w((function(e){for(;;)switch(e.n){case 0:throw new 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o=K(n,1)[0];return{typeName:r,changedIds:t,assembly:e,featureId:o.featureId,oldEnd:o.oldEnd,newEnd:o.newEnd}}return{typeName:r,changedIds:t,assembly:e,changes:n}}},{key:"executeOnServer",value:(o=B(U().m((function e(t){var n,r,o,i,a,s,c,l,u,d,A,f,h,g,p,m,y,_,v,b,C,I,w,E;return U().w((function(e){for(;;)switch(e.p=e.n){case 0:n=t.featureModel,r=t.session,o=this.logger,i=[],a=F(this.changes),e.p=1,a.s();case 2:if((s=a.n()).done){e.n=16;break}d=(u=s.value).featureId,A=u.oldEnd,f=u.newEnd,h=void 0,g=void 0,p=F(i),e.p=3,p.s();case 4:if((m=p.n()).done){e.n=6;break}if(!(_=this.getFeatureFromId(y=m.value,d))){e.n=5;break}return h=y,g=_,e.a(3,6);case 5:e.n=4;break;case 6:e.n=8;break;case 7:e.p=7,p.e(e.v);case 8:return e.p=8,p.f(),e.f(8);case 9:if(h){e.n=11;break}return e.n=10,n.findOne({allIds:d}).session(r).exec();case 10:(h=e.v)&&i.push(h);case 11:if(h){e.n=12;break}throw v="*** ERROR: The following featureId was not found in database ='".concat(d,"'"),o.error(v),new Error(v);case 12:if(null===(c=o.debug)||void 0===c||c.call(o,"*** TOP level feature found: ".concat(JSON.stringify(h))),g||(g=this.getFeatureFromId(h,d)),g){e.n=13;break}throw o.error("ERROR when searching feature by featureId"),new Error("ERROR when searching feature by featureId");case 13:if(null===(l=o.debug)||void 0===l||l.call(o,"*** Found feature: ".concat(JSON.stringify(g))),g.max===A){e.n=14;break}throw o.error("Expected previous max does not match"),new Error("Expected previous max does not match");case 14:g.max=f,h._id.equals(g._id)?h.markModified("end"):h.markModified("children");case 15:e.n=2;break;case 16:e.n=18;break;case 17:e.p=17,a.e(e.v);case 18:return e.p=18,a.f(),e.f(18);case 19:b=0,C=i;case 20:if(!(b<C.length)){e.n=25;break}return I=C[b],e.p=21,e.n=22,I.save();case 22:e.n=24;break;case 23:throw e.p=23,E=e.v,null===(w=o.debug)||void 0===w||w.call(o,"*** FAILED: ".concat(E)),E;case 24:b++,e.n=20;break;case 25:return e.a(2)}}),e,this,[[21,23],[3,7,8,9],[1,17,18,19]])}))),function(e){return o.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(r=B(U().m((function e(t){return U().w((function(e){for(;;)switch(e.n){case 0:throw new Error("executeOnLocalGFF3 not implemented");case 1:return e.a(2)}}),e)}))),function(e){return r.apply(this,arguments)})},{key:"executeOnClient",value:(n=B(U().m((function e(t){var n,r,o,i,a,s;return U().w((function(e){for(;;)switch(e.p=e.n){case 0:if(t){e.n=1;break}throw new Error("No data store");case 1:n=F(this.changes),e.p=2,n.s();case 3:if((r=n.n()).done){e.n=6;break}if(a=(o=r.value).newEnd,s=t.getFeature(i=o.featureId)){e.n=4;break}throw new Error('Could not find feature with identifier "'.concat(i,'"'));case 4:s.setMax(a);case 5:e.n=3;break;case 6:e.n=8;break;case 7:e.p=7,n.e(e.v);case 8:return e.p=8,n.f(),e.f(8);case 9:return e.a(2)}}),e,this,[[2,7,8,9]])}))),function(e){return n.apply(this,arguments)})},{key:"getInverse",value:function(){var e=this.assembly,n=this.changes,r=this.logger,o=this.typeName;return new t({changedIds:V(this.changedIds).reverse(),typeName:o,changes:V(n).reverse().map((function(e){return{featureId:e.featureId,oldEnd:e.newEnd,newEnd:e.oldEnd}})),assembly:e},{logger:r})}}]);var n,r,o}(pt);function Jr(e){return"LocationEndChange"===e.typeName}var Ur=function(e){function t(e,n){var r;return N(this,t),T(r=Q(this,t,[e,n]),"typeName","LocationStartChange"),T(r,"changes",void 0),r.changes="changes"in e?e.changes:[e],r}return O(t,e),D(t,[{key:"toJSON",value:function(){var e=this.assembly,t=this.changedIds,n=this.changes,r=this.typeName;if(1===n.length){var o=K(n,1)[0];return{typeName:r,changedIds:t,assembly:e,featureId:o.featureId,oldStart:o.oldStart,newStart:o.newStart}}return{typeName:r,changedIds:t,assembly:e,changes:n}}},{key:"executeOnServer",value:(o=B(U().m((function e(t){var n,r,o,i,a,s,c,l,u,d,A,f,h,g,p,m,y,_,v,b,C,I,w,E;return U().w((function(e){for(;;)switch(e.p=e.n){case 0:n=t.featureModel,r=t.session,o=this.logger,i=[],a=F(this.changes),e.p=1,a.s();case 2:if((s=a.n()).done){e.n=16;break}d=(u=s.value).featureId,A=u.oldStart,f=u.newStart,h=void 0,g=void 0,p=F(i),e.p=3,p.s();case 4:if((m=p.n()).done){e.n=6;break}if(!(_=this.getFeatureFromId(y=m.value,d))){e.n=5;break}return h=y,g=_,e.a(3,6);case 5:e.n=4;break;case 6:e.n=8;break;case 7:e.p=7,p.e(e.v);case 8:return e.p=8,p.f(),e.f(8);case 9:if(h){e.n=11;break}return e.n=10,n.findOne({allIds:d}).session(r).exec();case 10:(h=e.v)&&i.push(h);case 11:if(h){e.n=12;break}throw v="*** ERROR: The following featureId was not found in database ='".concat(d,"'"),o.error(v),new Error(v);case 12:if(null===(c=o.debug)||void 0===c||c.call(o,"*** TOP level feature found: ".concat(JSON.stringify(h))),g||(g=this.getFeatureFromId(h,d)),g){e.n=13;break}throw o.error("ERROR when searching feature by featureId"),new Error("ERROR when searching feature by featureId");case 13:if(null===(l=o.debug)||void 0===l||l.call(o,"*** Found feature: ".concat(JSON.stringify(g))),g.min===A){e.n=14;break}throw o.error("Expected previous max does not match"),new Error("Expected previous max does not match");case 14:g.min=f,h._id.equals(g._id)?h.markModified("start"):h.markModified("children");case 15:e.n=2;break;case 16:e.n=18;break;case 17:e.p=17,a.e(e.v);case 18:return e.p=18,a.f(),e.f(18);case 19:b=0,C=i;case 20:if(!(b<C.length)){e.n=25;break}return I=C[b],e.p=21,e.n=22,I.save();case 22:e.n=24;break;case 23:throw e.p=23,E=e.v,null===(w=o.debug)||void 0===w||w.call(o,"*** FAILED: ".concat(E)),E;case 24:b++,e.n=20;break;case 25:return e.a(2)}}),e,this,[[21,23],[3,7,8,9],[1,17,18,19]])}))),function(e){return o.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(r=B(U().m((function e(t){return U().w((function(e){for(;;)switch(e.n){case 0:throw new Error("executeOnLocalGFF3 not implemented");case 1:return e.a(2)}}),e)}))),function(e){return r.apply(this,arguments)})},{key:"executeOnClient",value:(n=B(U().m((function e(t){var n,r,o,i,a,s;return U().w((function(e){for(;;)switch(e.p=e.n){case 0:if(t){e.n=1;break}throw new Error("No data store");case 1:n=F(this.changes),e.p=2,n.s();case 3:if((r=n.n()).done){e.n=6;break}if(a=(o=r.value).newStart,s=t.getFeature(i=o.featureId)){e.n=4;break}throw new Error('Could not find feature with identifier "'.concat(i,'"'));case 4:s.setMin(a);case 5:e.n=3;break;case 6:e.n=8;break;case 7:e.p=7,n.e(e.v);case 8:return e.p=8,n.f(),e.f(8);case 9:return e.a(2)}}),e,this,[[2,7,8,9]])}))),function(e){return n.apply(this,arguments)})},{key:"getInverse",value:function(){var e=this.assembly,n=this.changes,r=this.logger,o=this.typeName;return new t({changedIds:V(this.changedIds).reverse(),typeName:o,changes:V(n).reverse().map((function(e){return{featureId:e.featureId,oldStart:e.newStart,newStart:e.oldStart}})),assembly:e},{logger:r})}}]);var n,r,o}(pt);function Gr(e){return"LocationStartChange"===e.typeName}function Hr(e,t){for(var n=[],r=0;r<e.length;r+=t){var o=e.slice(r,r+t);n.push(o)}return n}function Yr(e){var t,n,r=e,o=null===(t=r.attributes.get("gff_id"))||void 0===t?void 0:t.join(",");if(o)return"ID=".concat(o," (_id: ").concat(e._id.toString(),")");var i=null===(n=r.attributes.get("gff_name"))||void 0===n?void 0:n.join(",");return i?"Name=".concat(i," (_id: ").concat(e._id.toString(),")"):"_id: ".concat(e._id.toString())}function zr(e){var t={};if(!e)return t;for(var n=0,r=Object.entries(e);n<r.length;n++){var o=K(r[n],2),i=o[1];t[o[0]]=null==i?void 0:i.slice()}return t}function Kr(e){if(!e)return"";for(var t=[],n=0,r=Object.entries(e);n<r.length;n++){var o=K(r[n],2),i=o[1],a=o[0];a.startsWith("gff_")&&(a=(a=a.slice(4)).charAt(0).toUpperCase()+a.slice(1)),t.push(i?"".concat(a,"=").concat(i.join(",")):a)}return encodeURIComponent(t.join(";"))}var Wr=function(e){function t(e,n){var r;return N(this,t),T(r=Q(this,t,[e,n]),"typeName","UndoMergeExonsChange"),T(r,"changes",void 0),r.changes="changes"in e?e.changes:[e],r}return O(t,e),D(t,[{key:"toJSON",value:function(){var e=this.assembly,t=this.changedIds,n=this.changes,r=this.typeName;if(1===n.length){var o=K(n,1)[0];return{typeName:r,changedIds:t,assembly:e,exonsToRestore:o.exonsToRestore,parentFeatureId:o.parentFeatureId}}return{typeName:r,changedIds:t,assembly:e,changes:n}}},{key:"executeOnServer",value:(o=B(U().m((function e(t){var n,r,o,i,a,s,c,l,u,d,A,f,h,g;return U().w((function(e){for(;;)switch(e.p=e.n){case 0:n=t.featureModel,r=t.session,o=F(this.changes),e.p=1,o.s();case 2:if((i=o.n()).done){e.n=8;break}if(c=(a=i.value).parentFeatureId,2===(s=a.exonsToRestore).length){e.n=3;break}throw new Error("Expected exactly two exons to restore. Got :".concat(s.length));case 3:return e.n=4,n.findOne({allIds:c}).session(r).exec();case 4:if(l=e.v){e.n=5;break}throw new Error('Could not find feature with ID "'.concat(c,'"'));case 5:if(u=this.getFeatureFromId(l,c)){e.n=6;break}throw new Error('Could not find feature with ID "'.concat(c,'" in feature "').concat(l._id.toString(),'"'));case 6:u.children||(u.children=new Map),d=F(s);try{for(d.s();!(A=d.n()).done;)this.addChild(u,h=A.value),g=this.getChildFeatureIds(h),(f=l.allIds).push.apply(f,[h._id].concat(V(g)))}catch(e){d.e(e)}finally{d.f()}return e.n=7,l.save();case 7:e.n=2;break;case 8:e.n=10;break;case 9:e.p=9,o.e(e.v);case 10:return e.p=10,o.f(),e.f(10);case 11:return e.a(2)}}),e,this,[[1,9,10,11]])}))),function(e){return o.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(r=B(U().m((function e(t){return U().w((function(e){for(;;)switch(e.n){case 0:throw new Error("executeOnLocalGFF3 not implemented");case 1:return e.a(2)}}),e)}))),function(e){return r.apply(this,arguments)})},{key:"executeOnClient",value:(n=B(U().m((function e(t){var n,r,o,i,a,s,c,l;return U().w((function(e){for(;;)switch(e.p=e.n){case 0:if(t){e.n=1;break}throw new Error("No data store");case 1:n=F(this.changes),e.p=2,n.s();case 3:if((r=n.n()).done){e.n=7;break}if(i=(o=r.value).exonsToRestore,a=o.parentFeatureId){e.n=4;break}throw new Error("Parent ID is missing");case 4:if(s=t.getFeature(a)){e.n=5;break}throw new Error('Could not find parent feature "'.concat(a,'"'));case 5:s.attributes.get("_id")||s.setAttribute("_id",[s._id]),c=F(i);try{for(c.s();!(l=c.n()).done;)s.addChild(l.value)}catch(e){c.e(e)}finally{c.f()}case 6:e.n=3;break;case 7:e.n=9;break;case 8:e.p=8,n.e(e.v);case 9:return e.p=9,n.f(),e.f(9);case 10:return e.a(2)}}),e,this,[[2,8,9,10]])}))),function(e){return n.apply(this,arguments)})},{key:"getInverse",value:function(){var e=this.assembly,t=this.changes,n=this.logger,r=V(this.changedIds).reverse(),o=V(t).reverse().map((function(e){return{firstExon:e.exonsToRestore[0],secondExon:e.exonsToRestore[1],parentFeatureId:e.parentFeatureId}}));return new Vr({changedIds:r,typeName:"MergeExonsChange",changes:o,assembly:e},{logger:n})}}]);var n,r,o}(pt),Vr=function(e){function t(e,n){var r;return N(this,t),T(r=Q(this,t,[e,n]),"typeName","MergeExonsChange"),T(r,"changes",void 0),r.changes="changes"in e?e.changes:[e],r}return O(t,e),D(t,[{key:"notification",get:function(){return"Exons successfully merged"}},{key:"toJSON",value:function(){var e=this.assembly,t=this.changedIds,n=this.changes,r=this.typeName;if(1===n.length){var o=K(n,1)[0];return{typeName:r,changedIds:t,assembly:e,firstExon:o.firstExon,secondExon:o.secondExon,parentFeatureId:o.parentFeatureId}}return{typeName:r,changedIds:t,assembly:e,changes:n}}},{key:"executeOnServer",value:(o=B(U().m((function e(t){var n,r,o,i,a,s,c=this;return U().w((function(e){for(;;)switch(e.p=e.n){case 0:n=t.featureModel,r=t.session,o=this.logger,i=F(this.changes),e.p=1,s=U().m((function e(){var t,i,s,l,u,d,A,f;return U().w((function(e){for(;;)switch(e.n){case 0:return i=(t=a.value).firstExon,s=t.secondExon,e.n=1,n.findOne({allIds:i._id}).session(r).exec();case 1:if(l=e.v){e.n=2;break}throw u="*** ERROR: The following featureId was not found in database ='".concat(i._id,"'"),o.error(u),new Error(u);case 2:if(d=c.getFeatureFromId(l,i._id)){e.n=3;break}throw o.error("ERROR when searching feature by featureId"),new Error("ERROR when searching feature by featureId");case 3:return d.min=Math.min(i.min,s.min),d.max=Math.max(i.max,s.max),(A=d.attributes?JSON.parse(JSON.stringify(d.attributes)):{}).merged_with=[Kr(zr(s.attributes))],d.attributes=A,(f=Qr(l,s._id,c)).push(s._id),l.allIds=l.allIds.filter((function(e){return!f.includes(e)})),e.n=4,l.save();case 4:return e.a(2)}}),e)})),i.s();case 2:if((a=i.n()).done){e.n=4;break}return e.d(Y(s()),3);case 3:e.n=2;break;case 4:e.n=6;break;case 5:e.p=5,i.e(e.v);case 6:return e.p=6,i.f(),e.f(6);case 7:return e.a(2)}}),e,this,[[1,5,6,7]])}))),function(e){return o.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(r=B(U().m((function e(t){return U().w((function(e){for(;;)switch(e.n){case 0:throw new Error("executeOnLocalGFF3 not implemented");case 1:return e.a(2)}}),e)}))),function(e){return r.apply(this,arguments)})},{key:"executeOnClient",value:(n=B(U().m((function e(t){var n,r,o,i,a,s,c,l,u,d,A;return U().w((function(e){for(;;)switch(e.p=e.n){case 0:if(t){e.n=1;break}throw new Error("No data store");case 1:n=F(this.changes),e.p=2,n.s();case 3:if((r=n.n()).done){e.n=6;break}if(l=(s=r.value).secondExon,u=t.getFeature((c=s.firstExon)._id)){e.n=4;break}throw new Error('Could not find feature with identifier "'.concat(c._id,'"'));case 4:u.setMin(Math.min(c.min,l.min)),u.setMax(Math.max(c.max,l.max)),d=null!==(o=null===(i=u.attributes.get("merged_with"))||void 0===i?void 0:i.slice())&&void 0!==o?o:[],A=Kr(zr(l.attributes)),d.includes(A)||d.push(A),u.setAttribute("merged_with",d),null===(a=u.parent)||void 0===a||a.deleteChild(l._id);case 5:e.n=3;break;case 6:e.n=8;break;case 7:e.p=7,n.e(e.v);case 8:return e.p=8,n.f(),e.f(8);case 9:return e.a(2)}}),e,this,[[2,7,8,9]])}))),function(e){return n.apply(this,arguments)})},{key:"getInverse",value:function(){var e,t=this.assembly,n=this.changes,r=this.logger,o=V(this.changedIds).reverse(),i=V(n).reverse().map((function(e){return{exonsToRestore:[e.firstExon,e.secondExon],parentFeatureId:e.parentFeatureId}}));return null===(e=r.debug)||void 0===e||e.call(r,"INVERSE CHANGE '".concat(JSON.stringify(i),"'")),new Wr({changedIds:o,typeName:"UndoMergeExonsChange",changes:i,assembly:t},{logger:r})}}]);var n,r,o}(pt),$r=function(e){function t(e,n){var r;return N(this,t),T(r=Q(this,t,[e,n]),"typeName","UndoMergeTranscriptsChange"),T(r,"changes",void 0),r.changes="changes"in e?e.changes:[e],r}return O(t,e),D(t,[{key:"toJSON",value:function(){var e=this.assembly,t=this.changedIds,n=this.changes,r=this.typeName;if(1===n.length){var o=K(n,1)[0];return{typeName:r,changedIds:t,assembly:e,transcriptsToRestore:o.transcriptsToRestore,parentFeatureId:o.parentFeatureId}}return{typeName:r,changedIds:t,assembly:e,changes:n}}},{key:"executeOnServer",value:(o=B(U().m((function e(t){var n,r,o,i,a,s,c,l,u,d,A,f,h,g;return U().w((function(e){for(;;)switch(e.p=e.n){case 0:n=t.featureModel,r=t.session,o=F(this.changes),e.p=1,o.s();case 2:if((i=o.n()).done){e.n=8;break}if(c=(a=i.value).parentFeatureId,2===(s=a.transcriptsToRestore).length){e.n=3;break}throw new Error("Expected exactly two transcripts to restore. Got :".concat(s.length));case 3:return e.n=4,n.findOne({allIds:c}).session(r).exec();case 4:if(l=e.v){e.n=5;break}throw new Error('Could not find feature with ID "'.concat(c,'"'));case 5:if(u=this.getFeatureFromId(l,c)){e.n=6;break}throw new Error('Could not find feature with ID "'.concat(c,'" in feature "').concat(l._id.toString(),'"'));case 6:u.children||(u.children=new Map),d=F(s);try{for(d.s();!(A=d.n()).done;)this.addChild(u,h=A.value),g=this.getChildFeatureIds(h),(f=l.allIds).push.apply(f,[h._id].concat(V(g)))}catch(e){d.e(e)}finally{d.f()}return e.n=7,l.save();case 7:e.n=2;break;case 8:e.n=10;break;case 9:e.p=9,o.e(e.v);case 10:return e.p=10,o.f(),e.f(10);case 11:return e.a(2)}}),e,this,[[1,9,10,11]])}))),function(e){return o.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(r=B(U().m((function e(t){return U().w((function(e){for(;;)switch(e.n){case 0:throw new Error("executeOnLocalGFF3 not implemented");case 1:return e.a(2)}}),e)}))),function(e){return r.apply(this,arguments)})},{key:"executeOnClient",value:(n=B(U().m((function e(t){var n,r,o,i,a,s,c,l;return U().w((function(e){for(;;)switch(e.p=e.n){case 0:if(t){e.n=1;break}throw new Error("No data store");case 1:n=F(this.changes),e.p=2,n.s();case 3:if((r=n.n()).done){e.n=7;break}if(i=(o=r.value).transcriptsToRestore,a=o.parentFeatureId){e.n=4;break}throw new Error("Parent ID is missing");case 4:if(s=t.getFeature(a)){e.n=5;break}throw new Error('Could not find parent feature "'.concat(a,'"'));case 5:s.attributes.get("_id")||s.setAttribute("_id",[s._id]),c=F(i);try{for(c.s();!(l=c.n()).done;)s.addChild(l.value)}catch(e){c.e(e)}finally{c.f()}case 6:e.n=3;break;case 7:e.n=9;break;case 8:e.p=8,n.e(e.v);case 9:return e.p=9,n.f(),e.f(9);case 10:return e.a(2)}}),e,this,[[2,8,9,10]])}))),function(e){return n.apply(this,arguments)})},{key:"getInverse",value:function(){var e=this.assembly,t=this.changes,n=this.logger,r=V(this.changedIds).reverse(),o=V(t).reverse().map((function(e){return{firstTranscript:e.transcriptsToRestore[0],secondTranscript:e.transcriptsToRestore[1],parentFeatureId:e.parentFeatureId}}));return new Xr({changedIds:r,typeName:"MergeTranscriptsChange",changes:o,assembly:e},{logger:n})}}]);var n,r,o}(pt),Xr=function(e){function t(e,n){var r;return N(this,t),T(r=Q(this,t,[e,n]),"typeName","MergeTranscriptsChange"),T(r,"changes",void 0),r.changes="changes"in e?e.changes:[e],r}return O(t,e),D(t,[{key:"notification",get:function(){return"Transcripts successfully merged"}},{key:"toJSON",value:function(){var e=this.assembly,t=this.changedIds,n=this.changes,r=this.typeName;if(1===n.length){var o=K(n,1)[0];return{typeName:r,changedIds:t,assembly:e,firstTranscript:o.firstTranscript,secondTranscript:o.secondTranscript,parentFeatureId:o.parentFeatureId}}return{typeName:r,changedIds:t,assembly:e,changes:n}}},{key:"executeOnServer",value:(i=B(U().m((function e(t){var n,r,o,i,a,s,c=this;return U().w((function(e){for(;;)switch(e.p=e.n){case 0:n=t.featureModel,r=t.session,o=this.logger,i=F(this.changes),e.p=1,s=U().m((function e(){var t,i,s,l,u,d,A;return U().w((function(e){for(;;)switch(e.n){case 0:return i=(t=a.value).firstTranscript,s=t.secondTranscript,e.n=1,n.findOne({allIds:i._id}).session(r).exec();case 1:if(l=e.v){e.n=2;break}throw u="*** ERROR: The following featureId was not found in database ='".concat(i._id,"'"),o.error(u),new Error(u);case 2:if(d=c.getFeatureFromId(l,i._id)){e.n=3;break}throw o.error("ERROR when searching feature by featureId"),new Error("ERROR when searching feature by featureId");case 3:return c.mergeTranscriptsOnServer(d,s),(A=Qr(l,s._id,c)).push(s._id),l.allIds=l.allIds.filter((function(e){return!A.includes(e)})),e.n=4,l.save();case 4:return e.a(2)}}),e)})),i.s();case 2:if((a=i.n()).done){e.n=4;break}return e.d(Y(s()),3);case 3:e.n=2;break;case 4:e.n=6;break;case 5:e.p=5,i.e(e.v);case 6:return e.p=6,i.f(),e.f(6);case 7:return e.a(2)}}),e,this,[[1,5,6,7]])}))),function(e){return i.apply(this,arguments)})},{key:"mergeTranscriptsOnServer",value:function(e,t){e.min=Math.min(e.min,t.min),e.max=Math.max(e.max,t.max);var n=e.attributes?JSON.parse(JSON.stringify(e.attributes)):{};if(t.attributes&&(Object.keys(n).includes("merged_with")||(n.merged_with=[]),n.merged_with.push(Kr(zr(t.attributes)))),e.attributes=n,t.children)for(var r=0,o=Object.entries(t.children);r<o.length;r++){var i=K(o[r],2);this.mergeFeatureIntoTranscriptOnServer(i[1],e)}}},{key:"mergeFeatureIntoTranscriptOnServer",value:function(e,t){var n=this;t.children||(t.children=new Map);var r,i,a,s=!1,c=F(t.children);try{for(c.s();!(a=c.n()).done;){var l=K(a.value,2)[1];if(s&&r?i=!0:(i=!1,r=l),r.type===e.type&&r.type===l.type&&o.doesIntersect2(e.min,e.max,r.min,r.max)&&o.doesIntersect2(l.min,l.max,r.min,r.max)){r.min=Math.min(e.min,r.min,l.min),r.max=Math.max(e.max,r.max,l.max),r.attributes||(r.attributes={});var u=JSON.parse(JSON.stringify(r.attributes));Object.keys(u).includes("merged_with")||(u.merged_with=[]);var d=u.merged_with;if(d.push(Kr(zr(e.attributes))),i){var A=l.attributes?JSON.parse(JSON.stringify(l.attributes)):void 0;d.push(Kr(A)),t.children.delete(l._id.toString())}u.merged_with=V(new Set(d)),r.attributes=u,s=!0}}}catch(e){c.e(e)}finally{c.f()}s&&r&&e.children&&Object.entries(e.children).map((function(e){var t=K(e,2);n.addChild(r,t[1])})),this.addChild(t,s&&r?r:e)}},{key:"executeOnClient",value:(r=B(U().m((function e(t){var n,r,o,i,a,s,c,l;return U().w((function(e){for(;;)switch(e.p=e.n){case 0:if(t){e.n=1;break}throw new Error("No data store");case 1:n=F(this.changedIds.entries()),e.p=2,n.s();case 3:if((r=n.n()).done){e.n=6;break}if(i=K(r.value,2),a=i[1],c=(s=this.changes[i[0]]).secondTranscript,l=t.getFeature(s.firstTranscript._id)){e.n=4;break}throw new Error('Could not find feature with identifier "'.concat(a,'"'));case 4:this.mergeTranscriptsOnClient(l,c),null===(o=l.parent)||void 0===o||o.deleteChild(c._id);case 5:e.n=3;break;case 6:e.n=8;break;case 7:e.p=7,n.e(e.v);case 8:return e.p=8,n.f(),e.f(8);case 9:return e.a(2)}}),e,this,[[2,7,8,9]])}))),function(e){return r.apply(this,arguments)})},{key:"mergeTranscriptsOnClient",value:function(e,t){var n,r;e.setMin(Math.min(e.min,t.min)),e.setMax(Math.max(e.max,t.max));var o=null!==(n=null===(r=e.attributes.get("merged_with"))||void 0===r?void 0:r.slice())&&void 0!==n?n:[],i=Kr(zr(t.attributes));if(o.includes(i)||o.push(i),e.setAttribute("merged_with",o),t.children)for(var a=0,s=Object.entries(t.children);a<s.length;a++){var c=K(s[a],2);this.mergeFeatureIntoTranscriptOnClient(c[1],e)}}},{key:"mergeFeatureIntoTranscriptOnClient",value:function(e,t){t.children||(t.children=new Map);var n,r,i,a=!1,s=F(t.children);try{for(s.s();!(i=s.n()).done;){var l=K(i.value,2)[1];if(a&&n?r=!0:(r=!1,n=l),n.type===e.type&&n.type===l.type&&o.doesIntersect2(e.min,e.max,n.min,n.max)&&o.doesIntersect2(l.min,l.max,n.min,n.max)){var u,d;n.setMin(Math.min(e.min,n.min,l.min)),n.setMax(Math.max(e.max,n.max,l.max));var A=null!==(u=null===(d=n.attributes.get("merged_with"))||void 0===d?void 0:d.slice())&&void 0!==u?u:[];A.push(Kr(zr(e.attributes))),r&&(A.push(Kr(c.getSnapshot(l).attributes)),t.deleteChild(l._id)),n.setAttribute("merged_with",V(new Set(A))),a=!0}}}catch(e){s.e(e)}finally{s.f()}a&&n&&e.children&&Object.entries(e.children).map((function(e){var t=K(e,2);n.addChild(t[1])})),t.addChild(a&&n?c.getSnapshot(n):e)}},{key:"executeOnLocalGFF3",value:(n=B(U().m((function e(t){return U().w((function(e){for(;;)switch(e.n){case 0:throw new Error("executeOnLocalGFF3 not implemented");case 1:return e.a(2)}}),e)}))),function(e){return n.apply(this,arguments)})},{key:"getInverse",value:function(){var e,t=this.assembly,n=this.changes,r=this.logger,o=V(this.changedIds).reverse(),i=V(n).reverse().map((function(e){return{transcriptsToRestore:[e.firstTranscript,e.secondTranscript],parentFeatureId:e.parentFeatureId}}));return null===(e=r.debug)||void 0===e||e.call(r,"INVERSE CHANGE '".concat(JSON.stringify(i),"'")),new $r({changedIds:o,typeName:"UndoMergeTranscriptsChange",changes:i,assembly:t},{logger:r})}}]);var n,r,i}(pt),Zr=function(e){function t(e,n){var r;return N(this,t),T(r=Q(this,t,[e,n]),"typeName","UndoSplitExonChange"),T(r,"changes",void 0),r.changes="changes"in e?e.changes:[e],r}return O(t,e),D(t,[{key:"toJSON",value:function(){var e=this.assembly,t=this.changedIds,n=this.changes,r=this.typeName;if(1===n.length){var o=K(n,1)[0];return{typeName:r,changedIds:t,assembly:e,exonToRestore:o.exonToRestore,parentFeatureId:o.parentFeatureId,idsToDelete:o.idsToDelete,upstreamCut:o.upstreamCut,downstreamCut:o.downstreamCut,leftExonId:o.leftExonId,rightExonId:o.rightExonId}}return{typeName:r,changedIds:t,assembly:e,changes:n}}},{key:"executeOnServer",value:(o=B(U().m((function e(t){var n,r,o,i,a,s=this;return U().w((function(e){for(;;)switch(e.p=e.n){case 0:n=t.featureModel,r=t.session,o=F(this.changes),e.p=1,a=U().m((function e(){var t,o,a,c,l,u,d,A;return U().w((function(e){for(;;)switch(e.n){case 0:return a=(o=i.value).exonToRestore,c=o.parentFeatureId,l=o.idsToDelete,e.n=1,n.findOne({allIds:c}).session(r).exec();case 1:if(u=e.v){e.n=2;break}throw new Error('Could not find feature with ID "'.concat(c,'"'));case 2:if(d=s.getFeatureFromId(u,c)){e.n=3;break}throw new Error('Could not find feature with ID "'.concat(c,'" in feature "').concat(u._id.toString(),'"'));case 3:return d.children||(d.children=new Map),s.addChild(d,a),A=s.getChildFeatureIds(a),(t=u.allIds).push.apply(t,[a._id].concat(V(A))),u.allIds=u.allIds.filter((function(e){return!l.includes(e)})),l.map((function(e){return Qr(u,e,s)})),e.n=4,u.save();case 4:return e.a(2)}}),e)})),o.s();case 2:if((i=o.n()).done){e.n=4;break}return e.d(Y(a()),3);case 3:e.n=2;break;case 4:e.n=6;break;case 5:e.p=5,o.e(e.v);case 6:return e.p=6,o.f(),e.f(6);case 7:return e.a(2)}}),e,this,[[1,5,6,7]])}))),function(e){return o.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(r=B(U().m((function e(t){return U().w((function(e){for(;;)switch(e.n){case 0:throw new Error("executeOnLocalGFF3 not implemented");case 1:return e.a(2)}}),e)}))),function(e){return r.apply(this,arguments)})},{key:"executeOnClient",value:(n=B(U().m((function e(t){var n,r,o;return U().w((function(e){for(;;)switch(e.p=e.n){case 0:if(t){e.n=1;break}throw new Error("No data store");case 1:n=F(this.changes),e.p=2,o=U().m((function e(){var n,o,i,a,s;return U().w((function(e){for(;;)switch(e.n){case 0:if(o=(n=r.value).exonToRestore,a=n.idsToDelete,i=n.parentFeatureId){e.n=1;break}throw new Error("Parent ID is missing");case 1:if(s=t.getFeature(i)){e.n=2;break}throw new Error('Could not find parent feature "'.concat(i,'"'));case 2:s.attributes.get("_id")||s.setAttribute("_id",[s._id]),s.addChild(o),a.map((function(e){s.deleteChild(e)}));case 3:return e.a(2)}}),e)})),n.s();case 3:if((r=n.n()).done){e.n=5;break}return e.d(Y(o()),4);case 4:e.n=3;break;case 5:e.n=7;break;case 6:e.p=6,n.e(e.v);case 7:return e.p=7,n.f(),e.f(7);case 8:return e.a(2)}}),e,this,[[2,6,7,8]])}))),function(e){return n.apply(this,arguments)})},{key:"getInverse",value:function(){var e=this.assembly,t=this.changes,n=this.logger,r=V(this.changedIds).reverse(),o=V(t).reverse().map((function(e){return{parentFeatureId:e.parentFeatureId,exonToBeSplit:e.exonToRestore,upstreamCut:e.upstreamCut,downstreamCut:e.downstreamCut,leftExonId:e.leftExonId,rightExonId:e.rightExonId}}));return new eo({changedIds:r,typeName:"SplitExonChange",changes:o,assembly:e},{logger:n})}}]);var n,r,o}(pt),eo=function(e){function t(e,n){var r;return N(this,t),T(r=Q(this,t,[e,n]),"typeName","SplitExonChange"),T(r,"changes",void 0),r.changes="changes"in e?e.changes:[e],r}return O(t,e),D(t,[{key:"notification",get:function(){return"Exon successfully split"}},{key:"toJSON",value:function(){var e=this.assembly,t=this.changedIds,n=this.changes,r=this.typeName;if(1===n.length){var o=K(n,1)[0];return{typeName:r,changedIds:t,assembly:e,exonToBeSplit:o.exonToBeSplit,parentFeatureId:o.parentFeatureId,upstreamCut:o.upstreamCut,downstreamCut:o.downstreamCut,leftExonId:o.leftExonId,rightExonId:o.rightExonId}}return{typeName:r,changedIds:t,assembly:e,changes:n}}},{key:"executeOnServer",value:(o=B(U().m((function e(t){var n,r,o,i,a,s,c=this;return U().w((function(e){for(;;)switch(e.p=e.n){case 0:n=t.featureModel,r=t.session,o=this.logger,i=F(this.changes),e.p=1,s=U().m((function e(){var t,i,s,l,u,d,A,f,h,g,p,m,y,_,v;return U().w((function(e){for(;;)switch(e.n){case 0:return i=(t=a.value).exonToBeSplit,s=t.parentFeatureId,l=t.upstreamCut,u=t.downstreamCut,d=t.leftExonId,A=t.rightExonId,e.n=1,n.findOne({allIds:i._id}).session(r).exec();case 1:if(f=e.v){e.n=2;break}throw h="*** ERROR: The following featureId was not found in database ='".concat(i._id,"'"),o.error(h),new Error(h);case 2:if(null!=(g=c.getFeatureFromId(f,s))&&g.children){e.n=3;break}throw new Error("ERROR: There should be at least one child (i.e. the exon to be split)");case 3:return p=c.makeSplitExons(i,l,u,d,A),m=K(p,2),_=m[1],g.children.set((y=m[0])._id,q(q({allIds:[]},y),{},{_id:y._id})),g.children.set(_._id,q(q({allIds:[]},_),{},{_id:_._id})),g.children=new Map(V(g.children.entries()).sort((function(e,t){return e[1].min-t[1].min}))),(v=Qr(f,i._id,c)).push(i._id),f.allIds=f.allIds.filter((function(e){return!v.includes(e)})),f.allIds.push(y._id,_._id),e.n=4,f.save();case 4:return e.a(2)}}),e)})),i.s();case 2:if((a=i.n()).done){e.n=4;break}return e.d(Y(s()),3);case 3:e.n=2;break;case 4:e.n=6;break;case 5:e.p=5,i.e(e.v);case 6:return e.p=6,i.f(),e.f(6);case 7:return e.a(2)}}),e,this,[[1,5,6,7]])}))),function(e){return o.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(r=B(U().m((function e(t){return U().w((function(e){for(;;)switch(e.n){case 0:throw new Error("executeOnLocalGFF3 not implemented");case 1:return e.a(2)}}),e)}))),function(e){return r.apply(this,arguments)})},{key:"executeOnClient",value:(n=B(U().m((function e(t){var n,r,o,i,a,s,c,l,u,d,A,f,h,g,p;return U().w((function(e){for(;;)switch(e.p=e.n){case 0:if(t){e.n=1;break}throw new Error("No data store");case 1:n=F(this.changedIds.entries()),e.p=2,n.s();case 3:if((r=n.n()).done){e.n=7;break}if(o=K(r.value,1),a=(i=this.changes[o[0]]).exonToBeSplit,c=i.upstreamCut,l=i.downstreamCut,u=i.leftExonId,d=i.rightExonId,s=i.parentFeatureId){e.n=4;break}throw new Error("TODO: Split exon without parent");case 4:if(A=this.makeSplitExons(a,c,l,u,d),f=K(A,2),h=f[0],g=f[1],p=t.getFeature(s)){e.n=5;break}throw new Error('Could not find parent feature "'.concat(s,'"'));case 5:p.addChild(h),p.addChild(g),t.getFeature(a._id)&&t.deleteFeature(a._id);case 6:e.n=3;break;case 7:e.n=9;break;case 8:e.p=8,n.e(e.v);case 9:return e.p=9,n.f(),e.f(9);case 10:return e.a(2)}}),e,this,[[2,8,9,10]])}))),function(e){return n.apply(this,arguments)})},{key:"getInverse",value:function(){var e,t=this.assembly,n=this.changes,r=this.logger,o=V(this.changedIds).reverse(),i=V(n).reverse().map((function(e){return{exonToRestore:e.exonToBeSplit,parentFeatureId:e.parentFeatureId,idsToDelete:[e.leftExonId,e.rightExonId],upstreamCut:e.upstreamCut,downstreamCut:e.downstreamCut,leftExonId:e.leftExonId,rightExonId:e.rightExonId}}));return null===(e=r.debug)||void 0===e||e.call(r,"INVERSE CHANGE '".concat(JSON.stringify(i),"'")),new Zr({changedIds:o,typeName:"UndoSplitExonChange",changes:i,assembly:t},{logger:r})}},{key:"makeSplitExons",value:function(e,t,n,r,o){var i=JSON.parse(JSON.stringify(e));delete i.attributes._id,delete i.attributes.gff_id;var a=structuredClone(i);a._id=r,a.max=t;var s=structuredClone(i);return s.min=n,s._id=o,[a,s]}}]);var n,r,o}(pt),to=function(e){function t(e,n){var r;return N(this,t),T(r=Q(this,t,[e,n]),"typeName","StrandChange"),T(r,"changes",void 0),r.changes="changes"in e?e.changes:[e],r}return O(t,e),D(t,[{key:"toJSON",value:function(){var e=this.assembly,t=this.changedIds,n=this.changes,r=this.typeName;if(1===n.length){var o=K(n,1)[0];return{typeName:r,changedIds:t,assembly:e,featureId:o.featureId,oldStrand:o.oldStrand,newStrand:o.newStrand}}return{typeName:r,changedIds:t,assembly:e,changes:n}}},{key:"executeOnServer",value:(o=B(U().m((function e(t){var n,r,o,i,a,s,c,l,u,d,A,f,h,g,p,m,y,_,v,b,C,I,w,E,x;return U().w((function(e){for(;;)switch(e.p=e.n){case 0:n=t.featureModel,r=t.session,i=this.logger,a=[],s=F(o=this.changes),e.p=1,s.s();case 2:if((c=s.n()).done){e.n=8;break}return A=(d=c.value).featureId,f=d.oldStrand,e.n=3,n.findOne({allIds:A}).session(r).exec();case 3:if(h=e.v){e.n=4;break}throw g="*** ERROR: The following featureId was not found in database ='".concat(A,"'"),i.error(g),new Error(g);case 4:if(null===(l=i.debug)||void 0===l||l.call(i,"*** Feature found: ".concat(JSON.stringify(h))),p=this.getFeatureFromId(h,A)){e.n=5;break}throw i.error("ERROR when searching feature by featureId"),new Error("ERROR when searching feature by featureId");case 5:if(null===(u=i.debug)||void 0===u||u.call(i,"*** Found feature: ".concat(JSON.stringify(p))),p.strand===f){e.n=6;break}throw m="*** ERROR: Feature's current strand \"".concat(h.strand,'" doesn\'t match with expected value "').concat(f,'"'),i.error(m),new Error(m);case 6:a.push({feature:p,topLevelFeature:h});case 7:e.n=2;break;case 8:e.n=10;break;case 9:e.p=9,s.e(e.v);case 10:return e.p=10,s.f(),e.f(10);case 11:y=F(o.entries()),e.p=12,y.s();case 13:if((_=y.n()).done){e.n=19;break}return b=K(_.value,2),w=(C=a[b[0]]).topLevelFeature,(I=C.feature).strand=b[1].newStrand,w._id.equals(I._id)?w.markModified("strand"):w.markModified("children"),e.p=14,e.n=15,w.save();case 15:e.n=17;break;case 16:throw e.p=16,x=e.v,null===(E=i.debug)||void 0===E||E.call(i,"*** FAILED: ".concat(x)),x;case 17:null===(v=i.debug)||void 0===v||v.call(i,"*** Object updated in Mongo. 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Array(r),i=0;e.forEach((function(e,n){Xo(e,!1,(function(e){var a;o[n]=e,++i===r&&(a=o.join(ci),t.doWrite(a,(function(){t.writable=!0,t.emitReserved("drain")})))}))}))}(e)}},{key:"uri",value:function(){var e=this.opts.secure?"https":"http",t=this.query||{};return!1!==this.opts.timestampRequests&&(t[this.opts.timestampParam]=wi()),this.supportsBinary||t.sid||(t.b64=1),this.createUri(e,t)}},{key:"request",value:function(){var e=arguments.length>0&&void 0!==arguments[0]?arguments[0]:{};return Object.assign(e,{xd:this.xd,cookieJar:this.cookieJar},this.opts),new Ni(this.uri(),e)}},{key:"doWrite",value:function(e,t){var n=this,r=this.request({method:"POST",data:e});r.on("success",t),r.on("error",(function(e,t){n.onError("xhr post error",e,t)}))}},{key:"doPoll",value:function(){var e=this,t=this.request();t.on("data",this.onData.bind(this)),t.on("error",(function(t,n){e.onError("xhr poll error",t,n)})),this.pollXhr=t}}])}(_i),Ni=function(e){function t(e,n){var r;return N(this,t),pi(r=Q(this,t),n),r.opts=n,r.method=n.method||"GET",r.uri=e,r.data=void 0!==n.data?n.data:null,r.create(),r}return O(t,e),D(t,[{key:"create",value:function(){var e,n=this,r=fi(this.opts,"agent","pfx","key","passphrase","cert","ca","ciphers","rejectUnauthorized","autoUnref");r.xdomain=!!this.opts.xd;var o=this.xhr=new Si(r);try{o.open(this.method,this.uri,!0);try{if(this.opts.extraHeaders)for(var i in o.setDisableHeaderCheck&&o.setDisableHeaderCheck(!0),this.opts.extraHeaders)this.opts.extraHeaders.hasOwnProperty(i)&&o.setRequestHeader(i,this.opts.extraHeaders[i])}catch(e){}if("POST"===this.method)try{o.setRequestHeader("Content-type","text/plain;charset=UTF-8")}catch(e){}try{o.setRequestHeader("Accept","*/*")}catch(e){}null===(e=this.opts.cookieJar)||void 0===e||e.addCookies(o),"withCredentials"in o&&(o.withCredentials=this.opts.withCredentials),this.opts.requestTimeout&&(o.timeout=this.opts.requestTimeout),o.onreadystatechange=function(){var e;3===o.readyState&&(null===(e=n.opts.cookieJar)||void 0===e||e.parseCookies(o)),4===o.readyState&&(200===o.status||1223===o.status?n.onLoad():n.setTimeoutFn((function(){n.onError("number"==typeof o.status?o.status:0)}),0))},o.send(this.data)}catch(e){return void this.setTimeoutFn((function(){n.onError(e)}),0)}"undefined"!=typeof document&&(this.index=t.requestsCount++,t.requests[this.index]=this)}},{key:"onError",value:function(e){this.emitReserved("error",e,this.xhr),this.cleanup(!0)}},{key:"cleanup",value:function(e){if(null!=this.xhr){if(this.xhr.onreadystatechange=Bi,e)try{this.xhr.abort()}catch(e){}"undefined"!=typeof document&&delete t.requests[this.index],this.xhr=null}}},{key:"onLoad",value:function(){var e=this.xhr.responseText;null!==e&&(this.emitReserved("data",e),this.emitReserved("success"),this.cleanup())}},{key:"abort",value:function(){this.cleanup()}}])}(di);function Ri(){for(var e in Ni.requests)Ni.requests.hasOwnProperty(e)&&Ni.requests[e].abort()}Ni.requestsCount=0,Ni.requests={},"undefined"!=typeof document&&("function"==typeof attachEvent?attachEvent("onunload",Ri):"function"==typeof addEventListener&&addEventListener("onpagehide"in Ai?"pagehide":"unload",Ri,!1));var Di=function(){return"function"==typeof Promise&&"function"==typeof Promise.resolve?function(e){return Promise.resolve().then(e)}:function(e,t){return t(e,0)}}(),Fi=Ai.WebSocket||Ai.MozWebSocket,Ti="undefined"!=typeof navigator&&"string"==typeof navigator.product&&"reactnative"===navigator.product.toLowerCase(),ji=function(e){function t(e){var n;return N(this,t),(n=Q(this,t,[e])).supportsBinary=!e.forceBase64,n}return O(t,e),D(t,[{key:"name",get:function(){return"websocket"}},{key:"doOpen",value:function(){if(this.check()){var e=this.uri(),t=this.opts.protocols,n=Ti?{}:fi(this.opts,"agent","perMessageDeflate","pfx","key","passphrase","cert","ca","ciphers","rejectUnauthorized","localAddress","protocolVersion","origin","maxPayload","family","checkServerIdentity");this.opts.extraHeaders&&(n.headers=this.opts.extraHeaders);try{this.ws=Ti?new Fi(e,t,n):t?new Fi(e,t):new Fi(e)}catch(e){return this.emitReserved("error",e)}this.ws.binaryType=this.socket.binaryType,this.addEventListeners()}}},{key:"addEventListeners",value:function(){var e=this;this.ws.onopen=function(){e.opts.autoUnref&&e.ws._socket.unref(),e.onOpen()},this.ws.onclose=function(t){return e.onClose({description:"websocket connection closed",context:t})},this.ws.onmessage=function(t){return e.onData(t.data)},this.ws.onerror=function(t){return e.onError("websocket error",t)}}},{key:"write",value:function(e){var t=this;this.writable=!1;for(var n=function(){var n=r===e.length-1;Xo(e[r],t.supportsBinary,(function(e){try{t.ws.send(e)}catch(e){}n&&Di((function(){t.writable=!0,t.emitReserved("drain")}),t.setTimeoutFn)}))},r=0;r<e.length;r++)n()}},{key:"doClose",value:function(){void 0!==this.ws&&(this.ws.close(),this.ws=null)}},{key:"uri",value:function(){var e=this.opts.secure?"wss":"ws",t=this.query||{};return this.opts.timestampRequests&&(t[this.opts.timestampParam]=wi()),this.supportsBinary||(t.b64=1),this.createUri(e,t)}},{key:"check",value:function(){return!!Fi}}])}(_i),Mi=function(e){function t(){return N(this,t),Q(this,t,arguments)}return O(t,e),D(t,[{key:"name",get:function(){return"webtransport"}},{key:"doOpen",value:function(){var e=this;"function"==typeof WebTransport&&(this.transport=new WebTransport(this.createUri("https"),this.opts.transportOptions[this.name]),this.transport.closed.then((function(){e.onClose()})).catch((function(t){e.onError("webtransport error",t)})),this.transport.ready.then((function(){e.transport.createBidirectionalStream().then((function(t){var n=function(e,t){ri||(ri=new TextDecoder);var n=[],r=0,o=-1,i=!1;return new TransformStream({transform:function(a,s){for(n.push(a);;){if(0===r){if(li(n)<1)break;var c=ui(n,1);i=128==(128&c[0]),r=(o=127&c[0])<126?3:126===o?1:2}else if(1===r){if(li(n)<2)break;var l=ui(n,2);o=new DataView(l.buffer,l.byteOffset,l.length).getUint16(0),r=3}else if(2===r){if(li(n)<8)break;var u=ui(n,8),d=new DataView(u.buffer,u.byteOffset,u.length),A=d.getUint32(0);if(A>Math.pow(2,21)-1){s.enqueue(Ko);break}o=A*Math.pow(2,32)+d.getUint32(4),r=3}else{if(li(n)<o)break;var f=ui(n,o);s.enqueue(ii(i?f:ri.decode(f),t)),r=0}if(0===o||o>e){s.enqueue(Ko);break}}}})}(Number.MAX_SAFE_INTEGER,e.socket.binaryType),r=t.readable.pipeThrough(n).getReader(),o=new TransformStream({transform:function(e,t){!function(e,t){Wo&&e.data instanceof Blob?e.data.arrayBuffer().then(ei).then(t):Vo&&(e.data instanceof ArrayBuffer||$o(e.data))?t(ei(e.data)):Xo(e,!1,(function(e){zo||(zo=new TextEncoder),t(zo.encode(e))}))}(e,(function(n){var r,o=n.length;if(o<126)r=new Uint8Array(1),new DataView(r.buffer).setUint8(0,o);else if(o<65536){r=new Uint8Array(3);var i=new DataView(r.buffer);i.setUint8(0,126),i.setUint16(1,o)}else{r=new Uint8Array(9);var a=new DataView(r.buffer);a.setUint8(0,127),a.setBigUint64(1,BigInt(o))}e.data&&"string"!=typeof e.data&&(r[0]|=128),t.enqueue(r),t.enqueue(n)}))}});o.readable.pipeTo(t.writable),e.writer=o.writable.getWriter();var i=function(){r.read().then((function(t){t.done||(e.onPacket(t.value),i())})).catch((function(e){}))};i();var a={type:"open"};e.query.sid&&(a.data='{"sid":"'.concat(e.query.sid,'"}')),e.writer.write(a).then((function(){return e.onOpen()}))}))})))}},{key:"write",value:function(e){var t=this;this.writable=!1;for(var n=function(){var n=r===e.length-1;t.writer.write(e[r]).then((function(){n&&Di((function(){t.writable=!0,t.emitReserved("drain")}),t.setTimeoutFn)}))},r=0;r<e.length;r++)n()}},{key:"doClose",value:function(){var e;null===(e=this.transport)||void 0===e||e.close()}}])}(_i),Oi={websocket:ji,webtransport:Mi,polling:Qi},Li=/^(?:(?![^:@\/?#]+:[^:@\/]*@)(http|https|ws|wss):\/\/)?((?:(([^:@\/?#]*)(?::([^:@\/?#]*))?)?@)?((?:[a-f0-9]{0,4}:){2,7}[a-f0-9]{0,4}|[^:\/?#]*)(?::(\d*))?)(((\/(?:[^?#](?![^?#\/]*\.[^?#\/.]+(?:[?#]|$)))*\/?)?([^?#\/]*))(?:\?([^#]*))?(?:#(.*))?)/,Pi=["source","protocol","authority","userInfo","user","password","host","port","relative","path","directory","file","query","anchor"];function qi(e){var t,n,r=e,o=e.indexOf("["),i=e.indexOf("]");-1!=o&&-1!=i&&(e=e.substring(0,o)+e.substring(o,i).replace(/:/g,";")+e.substring(i,e.length));for(var a,s=Li.exec(e||""),c={},l=14;l--;)c[Pi[l]]=s[l]||"";return-1!=o&&-1!=i&&(c.source=r,c.host=c.host.substring(1,c.host.length-1).replace(/;/g,":"),c.authority=c.authority.replace("[","").replace("]","").replace(/;/g,":"),c.ipv6uri=!0),c.pathNames=(n=(t=c.path).replace(/\/{2,9}/g,"/").split("/"),"/"!=t.slice(0,1)&&0!==t.length||n.splice(0,1),"/"==t.slice(-1)&&n.splice(n.length-1,1),n),c.queryKey=(a={},c.query.replace(/(?:^|&)([^&=]*)=?([^&]*)/g,(function(e,t,n){t&&(a[t]=n)})),a),c}var Ji=function(e){function t(e){var n,r=arguments.length>1&&void 0!==arguments[1]?arguments[1]:{};return N(this,t),(n=Q(this,t)).binaryType="arraybuffer",n.writeBuffer=[],e&&"object"===X(e)&&(r=e,e=null),e?(e=qi(e),r.hostname=e.host,r.secure="https"===e.protocol||"wss"===e.protocol,r.port=e.port,e.query&&(r.query=e.query)):r.host&&(r.hostname=qi(r.host).host),pi(n,r),n.secure=null!=r.secure?r.secure:"undefined"!=typeof location&&"https:"===location.protocol,r.hostname&&!r.port&&(r.port=n.secure?"443":"80"),n.hostname=r.hostname||("undefined"!=typeof location?location.hostname:"localhost"),n.port=r.port||("undefined"!=typeof location&&location.port?location.port:n.secure?"443":"80"),n.transports=r.transports||["polling","websocket","webtransport"],n.writeBuffer=[],n.prevBufferLen=0,n.opts=Object.assign({path:"/engine.io",agent:!1,withCredentials:!1,upgrade:!0,timestampParam:"t",rememberUpgrade:!1,addTrailingSlash:!0,rejectUnauthorized:!0,perMessageDeflate:{threshold:1024},transportOptions:{},closeOnBeforeunload:!1},r),n.opts.path=n.opts.path.replace(/\/$/,"")+(n.opts.addTrailingSlash?"/":""),"string"==typeof n.opts.query&&(n.opts.query=function(e){for(var t={},n=e.split("&"),r=0,o=n.length;r<o;r++){var i=n[r].split("=");t[decodeURIComponent(i[0])]=decodeURIComponent(i[1])}return t}(n.opts.query)),n.id=null,n.upgrades=null,n.pingInterval=null,n.pingTimeout=null,n.pingTimeoutTimer=null,"function"==typeof addEventListener&&(n.opts.closeOnBeforeunload&&(n.beforeunloadEventListener=function(){n.transport&&(n.transport.removeAllListeners(),n.transport.close())},addEventListener("beforeunload",n.beforeunloadEventListener,!1)),"localhost"!==n.hostname&&(n.offlineEventListener=function(){n.onClose("transport close",{description:"network connection lost"})},addEventListener("offline",n.offlineEventListener,!1))),n.open(),n}return O(t,e),D(t,[{key:"createTransport",value:function(e){var t=Object.assign({},this.opts.query);t.EIO=4,t.transport=e,this.id&&(t.sid=this.id);var n=Object.assign({},this.opts,{query:t,socket:this,hostname:this.hostname,secure:this.secure,port:this.port},this.opts.transportOptions[e]);return new Oi[e](n)}},{key:"open",value:function(){var e,n=this;if(this.opts.rememberUpgrade&&t.priorWebsocketSuccess&&-1!==this.transports.indexOf("websocket"))e="websocket";else{if(0===this.transports.length)return void this.setTimeoutFn((function(){n.emitReserved("error","No transports available")}),0);e=this.transports[0]}this.readyState="opening";try{e=this.createTransport(e)}catch(e){return this.transports.shift(),void this.open()}e.open(),this.setTransport(e)}},{key:"setTransport",value:function(e){var t=this;this.transport&&this.transport.removeAllListeners(),this.transport=e,e.on("drain",this.onDrain.bind(this)).on("packet",this.onPacket.bind(this)).on("error",this.onError.bind(this)).on("close",(function(e){return t.onClose("transport close",e)}))}},{key:"probe",value:function(e){var n=this,r=this.createTransport(e),o=!1;t.priorWebsocketSuccess=!1;var i=function(){o||(r.send([{type:"ping",data:"probe"}]),r.once("packet",(function(e){if(!o)if("pong"===e.type&&"probe"===e.data){if(n.upgrading=!0,n.emitReserved("upgrading",r),!r)return;t.priorWebsocketSuccess="websocket"===r.name,n.transport.pause((function(){o||"closed"!==n.readyState&&(d(),n.setTransport(r),r.send([{type:"upgrade"}]),n.emitReserved("upgrade",r),r=null,n.upgrading=!1,n.flush())}))}else{var i=new Error("probe error");i.transport=r.name,n.emitReserved("upgradeError",i)}})))};function a(){o||(o=!0,d(),r.close(),r=null)}var s=function(e){var t=new Error("probe error: "+e);t.transport=r.name,a(),n.emitReserved("upgradeError",t)};function c(){s("transport closed")}function l(){s("socket closed")}function u(e){r&&e.name!==r.name&&a()}var d=function(){r.removeListener("open",i),r.removeListener("error",s),r.removeListener("close",c),n.off("close",l),n.off("upgrading",u)};r.once("open",i),r.once("error",s),r.once("close",c),this.once("close",l),this.once("upgrading",u),-1!==this.upgrades.indexOf("webtransport")&&"webtransport"!==e?this.setTimeoutFn((function(){o||r.open()}),200):r.open()}},{key:"onOpen",value:function(){if(this.readyState="open",t.priorWebsocketSuccess="websocket"===this.transport.name,this.emitReserved("open"),this.flush(),"open"===this.readyState&&this.opts.upgrade)for(var e=0,n=this.upgrades.length;e<n;e++)this.probe(this.upgrades[e])}},{key:"onPacket",value:function(e){if("opening"===this.readyState||"open"===this.readyState||"closing"===this.readyState)switch(this.emitReserved("packet",e),this.emitReserved("heartbeat"),this.resetPingTimeout(),e.type){case"open":this.onHandshake(JSON.parse(e.data));break;case"ping":this.sendPacket("pong"),this.emitReserved("ping"),this.emitReserved("pong");break;case"error":var t=new Error("server error");t.code=e.data,this.onError(t);break;case"message":this.emitReserved("data",e.data),this.emitReserved("message",e.data)}}},{key:"onHandshake",value:function(e){this.emitReserved("handshake",e),this.id=e.sid,this.transport.query.sid=e.sid,this.upgrades=this.filterUpgrades(e.upgrades),this.pingInterval=e.pingInterval,this.pingTimeout=e.pingTimeout,this.maxPayload=e.maxPayload,this.onOpen(),"closed"!==this.readyState&&this.resetPingTimeout()}},{key:"resetPingTimeout",value:function(){var e=this;this.clearTimeoutFn(this.pingTimeoutTimer),this.pingTimeoutTimer=this.setTimeoutFn((function(){e.onClose("ping timeout")}),this.pingInterval+this.pingTimeout),this.opts.autoUnref&&this.pingTimeoutTimer.unref()}},{key:"onDrain",value:function(){this.writeBuffer.splice(0,this.prevBufferLen),this.prevBufferLen=0,0===this.writeBuffer.length?this.emitReserved("drain"):this.flush()}},{key:"flush",value:function(){if("closed"!==this.readyState&&this.transport.writable&&!this.upgrading&&this.writeBuffer.length){var e=this.getWritablePackets();this.transport.send(e),this.prevBufferLen=e.length,this.emitReserved("flush")}}},{key:"getWritablePackets",value:function(){if(!(this.maxPayload&&"polling"===this.transport.name&&this.writeBuffer.length>1))return this.writeBuffer;for(var e,t=1,n=0;n<this.writeBuffer.length;n++){var r=this.writeBuffer[n].data;if(r&&(t+="string"==typeof(e=r)?function(e){for(var t=0,n=0,r=0,o=e.length;r<o;r++)(t=e.charCodeAt(r))<128?n+=1:t<2048?n+=2:t<55296||t>=57344?n+=3:(r++,n+=4);return n}(e):Math.ceil(1.33*(e.byteLength||e.size))),n>0&&t>this.maxPayload)return this.writeBuffer.slice(0,n);t+=2}return this.writeBuffer}},{key:"write",value:function(e,t,n){return this.sendPacket("message",e,t,n),this}},{key:"send",value:function(e,t,n){return this.sendPacket("message",e,t,n),this}},{key:"sendPacket",value:function(e,t,n,r){if("function"==typeof t&&(r=t,t=void 0),"function"==typeof n&&(r=n,n=null),"closing"!==this.readyState&&"closed"!==this.readyState){(n=n||{}).compress=!1!==n.compress;var o={type:e,data:t,options:n};this.emitReserved("packetCreate",o),this.writeBuffer.push(o),r&&this.once("flush",r),this.flush()}}},{key:"close",value:function(){var e=this,t=function(){e.onClose("forced 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removeEventListener&&(removeEventListener("beforeunload",this.beforeunloadEventListener,!1),removeEventListener("offline",this.offlineEventListener,!1)),this.readyState="closed",this.id=null,this.emitReserved("close",e,t),this.writeBuffer=[],this.prevBufferLen=0)}},{key:"filterUpgrades",value:function(e){for(var t=[],n=0,r=e.length;n<r;n++)~this.transports.indexOf(e[n])&&t.push(e[n]);return t}}])}(di);Ji.protocol=4;var Ui="function"==typeof ArrayBuffer,Gi=function(e){return"function"==typeof ArrayBuffer.isView?ArrayBuffer.isView(e):e.buffer instanceof ArrayBuffer},Hi=Object.prototype.toString,Yi="function"==typeof Blob||"undefined"!=typeof Blob&&"[object BlobConstructor]"===Hi.call(Blob),zi="function"==typeof File||"undefined"!=typeof File&&"[object FileConstructor]"===Hi.call(File);function Ki(e){return Ui&&(e instanceof ArrayBuffer||Gi(e))||Yi&&e instanceof Blob||zi&&e instanceof File}function Wi(e,t){if(!e||"object"!==X(e))return!1;if(Array.isArray(e)){for(var n=0,r=e.length;n<r;n++)if(Wi(e[n]))return!0;return!1}if(Ki(e))return!0;if(e.toJSON&&"function"==typeof e.toJSON&&1===arguments.length)return Wi(e.toJSON(),!0);for(var o in e)if(Object.prototype.hasOwnProperty.call(e,o)&&Wi(e[o]))return!0;return!1}function Vi(e){var t=[],n=e;return n.data=$i(e.data,t),n.attachments=t.length,{packet:n,buffers:t}}function $i(e,t){if(!e)return e;if(Ki(e)){var n={_placeholder:!0,num:t.length};return t.push(e),n}if(Array.isArray(e)){for(var r=new Array(e.length),o=0;o<e.length;o++)r[o]=$i(e[o],t);return r}if("object"===X(e)&&!(e instanceof Date)){var i={};for(var a in e)Object.prototype.hasOwnProperty.call(e,a)&&(i[a]=$i(e[a],t));return i}return e}function Xi(e,t){return e.data=Zi(e.data,t),delete e.attachments,e}function Zi(e,t){if(!e)return e;if(e&&!0===e._placeholder){if("number"==typeof e.num&&e.num>=0&&e.num<t.length)return t[e.num];throw new Error("illegal attachments")}if(Array.isArray(e))for(var n=0;n<e.length;n++)e[n]=Zi(e[n],t);else if("object"===X(e))for(var r in e)Object.prototype.hasOwnProperty.call(e,r)&&(e[r]=Zi(e[r],t));return e}var ea,ta=["connect","connect_error","disconnect","disconnecting","newListener","removeListener"];!function(e){e[e.CONNECT=0]="CONNECT",e[e.DISCONNECT=1]="DISCONNECT",e[e.EVENT=2]="EVENT",e[e.ACK=3]="ACK",e[e.CONNECT_ERROR=4]="CONNECT_ERROR",e[e.BINARY_EVENT=5]="BINARY_EVENT",e[e.BINARY_ACK=6]="BINARY_ACK"}(ea||(ea={}));var na=function(){return D((function e(t){N(this,e),this.replacer=t}),[{key:"encode",value:function(e){return e.type!==ea.EVENT&&e.type!==ea.ACK||!Wi(e)?[this.encodeAsString(e)]:this.encodeAsBinary({type:e.type===ea.EVENT?ea.BINARY_EVENT:ea.BINARY_ACK,nsp:e.nsp,data:e.data,id:e.id})}},{key:"encodeAsString",value:function(e){var t=""+e.type;return e.type!==ea.BINARY_EVENT&&e.type!==ea.BINARY_ACK||(t+=e.attachments+"-"),e.nsp&&"/"!==e.nsp&&(t+=e.nsp+","),null!=e.id&&(t+=e.id),null!=e.data&&(t+=JSON.stringify(e.data,this.replacer)),t}},{key:"encodeAsBinary",value:function(e){var t=Vi(e),n=this.encodeAsString(t.packet),r=t.buffers;return r.unshift(n),r}}])}();function ra(e){return"[object Object]"===Object.prototype.toString.call(e)}var oa=function(e){function t(e){var n;return N(this,t),(n=Q(this,t)).reviver=e,n}return O(t,e),D(t,[{key:"add",value:function(e){var n;if("string"==typeof e){if(this.reconstructor)throw new Error("got plaintext data when reconstructing a packet");var r=(n=this.decodeString(e)).type===ea.BINARY_EVENT;r||n.type===ea.BINARY_ACK?(n.type=r?ea.EVENT:ea.ACK,this.reconstructor=new ia(n),0===n.attachments&&W(t,"emitReserved",this,3)(["decoded",n])):W(t,"emitReserved",this,3)(["decoded",n])}else{if(!Ki(e)&&!e.base64)throw new Error("Unknown type: "+e);if(!this.reconstructor)throw new Error("got binary data when not reconstructing a packet");(n=this.reconstructor.takeBinaryData(e))&&(this.reconstructor=null,W(t,"emitReserved",this,3)(["decoded",n]))}}},{key:"decodeString",value:function(e){var n=0,r={type:Number(e.charAt(0))};if(void 0===ea[r.type])throw new Error("unknown packet type "+r.type);if(r.type===ea.BINARY_EVENT||r.type===ea.BINARY_ACK){for(var o=n+1;"-"!==e.charAt(++n)&&n!=e.length;);var i=e.substring(o,n);if(i!=Number(i)||"-"!==e.charAt(n))throw new Error("Illegal attachments");r.attachments=Number(i)}if("/"===e.charAt(n+1)){for(var a=n+1;++n&&","!==e.charAt(n)&&n!==e.length;);r.nsp=e.substring(a,n)}else r.nsp="/";var s=e.charAt(n+1);if(""!==s&&Number(s)==s){for(var c=n+1;++n;){var l=e.charAt(n);if(null==l||Number(l)!=l){--n;break}if(n===e.length)break}r.id=Number(e.substring(c,n+1))}if(e.charAt(++n)){var u=this.tryParse(e.substr(n));if(!t.isPayloadValid(r.type,u))throw new Error("invalid payload");r.data=u}return r}},{key:"tryParse",value:function(e){try{return JSON.parse(e,this.reviver)}catch(e){return!1}}},{key:"destroy",value:function(){this.reconstructor&&(this.reconstructor.finishedReconstruction(),this.reconstructor=null)}}],[{key:"isPayloadValid",value:function(e,t){switch(e){case ea.CONNECT:return ra(t);case ea.DISCONNECT:return void 0===t;case ea.CONNECT_ERROR:return"string"==typeof t||ra(t);case ea.EVENT:case ea.BINARY_EVENT:return Array.isArray(t)&&("number"==typeof t[0]||"string"==typeof t[0]&&-1===ta.indexOf(t[0]));case ea.ACK:case ea.BINARY_ACK:return Array.isArray(t)}}}])}(di),ia=function(){return D((function e(t){N(this,e),this.packet=t,this.buffers=[],this.reconPack=t}),[{key:"takeBinaryData",value:function(e){if(this.buffers.push(e),this.buffers.length===this.reconPack.attachments){var t=Xi(this.reconPack,this.buffers);return this.finishedReconstruction(),t}return null}},{key:"finishedReconstruction",value:function(){this.reconPack=null,this.buffers=[]}}])}(),aa={__proto__:null,Decoder:oa,Encoder:na,get PacketType(){return ea}};function sa(e,t,n){return e.on(t,n),function(){e.off(t,n)}}var ca=Object.freeze({connect:1,connect_error:1,disconnect:1,disconnecting:1,newListener:1,removeListener:1}),la=function(e){function t(e,n,r){var o;return N(this,t),(o=Q(this,t)).connected=!1,o.recovered=!1,o.receiveBuffer=[],o.sendBuffer=[],o._queue=[],o._queueSeq=0,o.ids=0,o.acks={},o.flags={},o.io=e,o.nsp=n,r&&r.auth&&(o.auth=r.auth),o._opts=Object.assign({},r),o.io._autoConnect&&o.open(),o}return O(t,e),D(t,[{key:"disconnected",get:function(){return!this.connected}},{key:"subEvents",value:function(){if(!this.subs){var e=this.io;this.subs=[sa(e,"open",this.onopen.bind(this)),sa(e,"packet",this.onpacket.bind(this)),sa(e,"error",this.onerror.bind(this)),sa(e,"close",this.onclose.bind(this))]}}},{key:"active",get:function(){return!!this.subs}},{key:"connect",value:function(){return this.connected||(this.subEvents(),this.io._reconnecting||this.io.open(),"open"===this.io._readyState&&this.onopen()),this}},{key:"open",value:function(){return this.connect()}},{key:"send",value:function(){for(var e=arguments.length,t=new Array(e),n=0;n<e;n++)t[n]=arguments[n];return t.unshift("message"),this.emit.apply(this,t),this}},{key:"emit",value:function(e){if(ca.hasOwnProperty(e))throw new Error('"'+e.toString()+'" is a reserved event name');for(var t=arguments.length,n=new Array(t>1?t-1:0),r=1;r<t;r++)n[r-1]=arguments[r];if(n.unshift(e),this._opts.retries&&!this.flags.fromQueue&&!this.flags.volatile)return this._addToQueue(n),this;var o={type:ea.EVENT,data:n,options:{}};if(o.options.compress=!1!==this.flags.compress,"function"==typeof n[n.length-1]){var i=this.ids++,a=n.pop();this._registerAckCallback(i,a),o.id=i}return this.flags.volatile&&(!(this.io.engine&&this.io.engine.transport&&this.io.engine.transport.writable)||!this.connected)||(this.connected?(this.notifyOutgoingListeners(o),this.packet(o)):this.sendBuffer.push(o)),this.flags={},this}},{key:"_registerAckCallback",value:function(e,t){var n,r=this,o=null!==(n=this.flags.timeout)&&void 0!==n?n:this._opts.ackTimeout;if(void 0!==o){var i=this.io.setTimeoutFn((function(){delete r.acks[e];for(var n=0;n<r.sendBuffer.length;n++)r.sendBuffer[n].id===e&&r.sendBuffer.splice(n,1);t.call(r,new Error("operation has timed out"))}),o);this.acks[e]=function(){r.io.clearTimeoutFn(i);for(var e=arguments.length,n=new Array(e),o=0;o<e;o++)n[o]=arguments[o];t.apply(r,[null].concat(n))}}else this.acks[e]=t}},{key:"emitWithAck",value:function(e){for(var t=this,n=arguments.length,r=new Array(n>1?n-1:0),o=1;o<n;o++)r[o-1]=arguments[o];var i=void 0!==this.flags.timeout||void 0!==this._opts.ackTimeout;return new Promise((function(n,o){r.push((function(e,t){return i?e?o(e):n(t):n(e)})),t.emit.apply(t,[e].concat(r))}))}},{key:"_addToQueue",value:function(e){var t,n=this;"function"==typeof e[e.length-1]&&(t=e.pop());var r={id:this._queueSeq++,tryCount:0,pending:!1,args:e,flags:Object.assign({fromQueue:!0},this.flags)};e.push((function(e){if(r===n._queue[0]){if(null!==e)r.tryCount>n._opts.retries&&(n._queue.shift(),t&&t(e));else if(n._queue.shift(),t){for(var o=arguments.length,i=new Array(o>1?o-1:0),a=1;a<o;a++)i[a-1]=arguments[a];t.apply(void 0,[null].concat(i))}return r.pending=!1,n._drainQueue()}})),this._queue.push(r),this._drainQueue()}},{key:"_drainQueue",value:function(){if(this.connected&&0!==this._queue.length){var e=this._queue[0];e.pending&&!(arguments.length>0&&void 0!==arguments[0]&&arguments[0])||(e.pending=!0,e.tryCount++,this.flags=e.flags,this.emit.apply(this,e.args))}}},{key:"packet",value:function(e){e.nsp=this.nsp,this.io._packet(e)}},{key:"onopen",value:function(){var e=this;"function"==typeof this.auth?this.auth((function(t){e._sendConnectPacket(t)})):this._sendConnectPacket(this.auth)}},{key:"_sendConnectPacket",value:function(e){this.packet({type:ea.CONNECT,data:this._pid?Object.assign({pid:this._pid,offset:this._lastOffset},e):e})}},{key:"onerror",value:function(e){this.connected||this.emitReserved("connect_error",e)}},{key:"onclose",value:function(e,t){this.connected=!1,delete this.id,this.emitReserved("disconnect",e,t)}},{key:"onpacket",value:function(e){if(e.nsp===this.nsp)switch(e.type){case ea.CONNECT:e.data&&e.data.sid?this.onconnect(e.data.sid,e.data.pid):this.emitReserved("connect_error",new Error("It seems you are trying to reach a Socket.IO server in v2.x with a v3.x client, but they are not compatible (more information here: https://socket.io/docs/v3/migrating-from-2-x-to-3-0/)"));break;case ea.EVENT:case ea.BINARY_EVENT:this.onevent(e);break;case ea.ACK:case ea.BINARY_ACK:this.onack(e);break;case ea.DISCONNECT:this.ondisconnect();break;case ea.CONNECT_ERROR:this.destroy();var t=new Error(e.data.message);t.data=e.data.data,this.emitReserved("connect_error",t)}}},{key:"onevent",value:function(e){var t=e.data||[];null!=e.id&&t.push(this.ack(e.id)),this.connected?this.emitEvent(t):this.receiveBuffer.push(Object.freeze(t))}},{key:"emitEvent",value:function(e){if(this._anyListeners&&this._anyListeners.length){var n,r=F(this._anyListeners.slice());try{for(r.s();!(n=r.n()).done;)n.value.apply(this,e)}catch(e){r.e(e)}finally{r.f()}}W(t,"emit",this,1).apply(this,e),this._pid&&e.length&&"string"==typeof e[e.length-1]&&(this._lastOffset=e[e.length-1])}},{key:"ack",value:function(e){var t=this,n=!1;return function(){if(!n){n=!0;for(var r=arguments.length,o=new Array(r),i=0;i<r;i++)o[i]=arguments[i];t.packet({type:ea.ACK,id:e,data:o})}}}},{key:"onack",value:function(e){var t=this.acks[e.id];"function"==typeof t&&(t.apply(this,e.data),delete this.acks[e.id])}},{key:"onconnect",value:function(e,t){this.id=e,this.recovered=t&&this._pid===t,this._pid=t,this.connected=!0,this.emitBuffered(),this.emitReserved("connect"),this._drainQueue(!0)}},{key:"emitBuffered",value:function(){var e=this;this.receiveBuffer.forEach((function(t){return e.emitEvent(t)})),this.receiveBuffer=[],this.sendBuffer.forEach((function(t){e.notifyOutgoingListeners(t),e.packet(t)})),this.sendBuffer=[]}},{key:"ondisconnect",value:function(){this.destroy(),this.onclose("io server disconnect")}},{key:"destroy",value:function(){this.subs&&(this.subs.forEach((function(e){return e()})),this.subs=void 0),this.io._destroy(this)}},{key:"disconnect",value:function(){return this.connected&&this.packet({type:ea.DISCONNECT}),this.destroy(),this.connected&&this.onclose("io client disconnect"),this}},{key:"close",value:function(){return this.disconnect()}},{key:"compress",value:function(e){return this.flags.compress=e,this}},{key:"volatile",get:function(){return this.flags.volatile=!0,this}},{key:"timeout",value:function(e){return this.flags.timeout=e,this}},{key:"onAny",value:function(e){return this._anyListeners=this._anyListeners||[],this._anyListeners.push(e),this}},{key:"prependAny",value:function(e){return this._anyListeners=this._anyListeners||[],this._anyListeners.unshift(e),this}},{key:"offAny",value:function(e){if(!this._anyListeners)return this;if(e){for(var t=this._anyListeners,n=0;n<t.length;n++)if(e===t[n])return t.splice(n,1),this}else this._anyListeners=[];return this}},{key:"listenersAny",value:function(){return this._anyListeners||[]}},{key:"onAnyOutgoing",value:function(e){return this._anyOutgoingListeners=this._anyOutgoingListeners||[],this._anyOutgoingListeners.push(e),this}},{key:"prependAnyOutgoing",value:function(e){return this._anyOutgoingListeners=this._anyOutgoingListeners||[],this._anyOutgoingListeners.unshift(e),this}},{key:"offAnyOutgoing",value:function(e){if(!this._anyOutgoingListeners)return this;if(e){for(var t=this._anyOutgoingListeners,n=0;n<t.length;n++)if(e===t[n])return t.splice(n,1),this}else this._anyOutgoingListeners=[];return this}},{key:"listenersAnyOutgoing",value:function(){return this._anyOutgoingListeners||[]}},{key:"notifyOutgoingListeners",value:function(e){if(this._anyOutgoingListeners&&this._anyOutgoingListeners.length){var t,n=F(this._anyOutgoingListeners.slice());try{for(n.s();!(t=n.n()).done;)t.value.apply(this,e.data)}catch(e){n.e(e)}finally{n.f()}}}}])}(di);function ua(e){this.ms=(e=e||{}).min||100,this.max=e.max||1e4,this.factor=e.factor||2,this.jitter=e.jitter>0&&e.jitter<=1?e.jitter:0,this.attempts=0}ua.prototype.duration=function(){var e=this.ms*Math.pow(this.factor,this.attempts++);if(this.jitter){var t=Math.random(),n=Math.floor(t*this.jitter*e);e=0==(1&Math.floor(10*t))?e-n:e+n}return 0|Math.min(e,this.max)},ua.prototype.reset=function(){this.attempts=0},ua.prototype.setMin=function(e){this.ms=e},ua.prototype.setMax=function(e){this.max=e},ua.prototype.setJitter=function(e){this.jitter=e};var da=function(e){function t(e,n){var r,o;N(this,t),(r=Q(this,t)).nsps={},r.subs=[],e&&"object"===X(e)&&(n=e,e=void 0),(n=n||{}).path=n.path||"/socket.io",r.opts=n,pi(r,n),r.reconnection(!1!==n.reconnection),r.reconnectionAttempts(n.reconnectionAttempts||Infinity),r.reconnectionDelay(n.reconnectionDelay||1e3),r.reconnectionDelayMax(n.reconnectionDelayMax||5e3),r.randomizationFactor(null!==(o=n.randomizationFactor)&&void 0!==o?o:.5),r.backoff=new ua({min:r.reconnectionDelay(),max:r.reconnectionDelayMax(),jitter:r.randomizationFactor()}),r.timeout(null==n.timeout?2e4:n.timeout),r._readyState="closed",r.uri=e;var i=n.parser||aa;return r.encoder=new i.Encoder,r.decoder=new i.Decoder,r._autoConnect=!1!==n.autoConnect,r._autoConnect&&r.open(),r}return O(t,e),D(t,[{key:"reconnection",value:function(e){return arguments.length?(this._reconnection=!!e,this):this._reconnection}},{key:"reconnectionAttempts",value:function(e){return void 0===e?this._reconnectionAttempts:(this._reconnectionAttempts=e,this)}},{key:"reconnectionDelay",value:function(e){var t;return void 0===e?this._reconnectionDelay:(this._reconnectionDelay=e,null===(t=this.backoff)||void 0===t||t.setMin(e),this)}},{key:"randomizationFactor",value:function(e){var t;return void 0===e?this._randomizationFactor:(this._randomizationFactor=e,null===(t=this.backoff)||void 0===t||t.setJitter(e),this)}},{key:"reconnectionDelayMax",value:function(e){var t;return void 0===e?this._reconnectionDelayMax:(this._reconnectionDelayMax=e,null===(t=this.backoff)||void 0===t||t.setMax(e),this)}},{key:"timeout",value:function(e){return arguments.length?(this._timeout=e,this):this._timeout}},{key:"maybeReconnectOnOpen",value:function(){!this._reconnecting&&this._reconnection&&0===this.backoff.attempts&&this.reconnect()}},{key:"open",value:function(e){var t=this;if(~this._readyState.indexOf("open"))return this;this.engine=new Ji(this.uri,this.opts);var n=this.engine,r=this;this._readyState="opening",this.skipReconnect=!1;var o=sa(n,"open",(function(){r.onopen(),e&&e()})),i=function(n){t.cleanup(),t._readyState="closed",t.emitReserved("error",n),e?e(n):t.maybeReconnectOnOpen()},a=sa(n,"error",i);if(!1!==this._timeout){var s=this.setTimeoutFn((function(){o(),i(new Error("timeout")),n.close()}),this._timeout);this.opts.autoUnref&&s.unref(),this.subs.push((function(){t.clearTimeoutFn(s)}))}return this.subs.push(o),this.subs.push(a),this}},{key:"connect",value:function(e){return this.open(e)}},{key:"onopen",value:function(){this.cleanup(),this._readyState="open",this.emitReserved("open");var e=this.engine;this.subs.push(sa(e,"ping",this.onping.bind(this)),sa(e,"data",this.ondata.bind(this)),sa(e,"error",this.onerror.bind(this)),sa(e,"close",this.onclose.bind(this)),sa(this.decoder,"decoded",this.ondecoded.bind(this)))}},{key:"onping",value:function(){this.emitReserved("ping")}},{key:"ondata",value:function(e){try{this.decoder.add(e)}catch(e){this.onclose("parse error",e)}}},{key:"ondecoded",value:function(e){var t=this;Di((function(){t.emitReserved("packet",e)}),this.setTimeoutFn)}},{key:"onerror",value:function(e){this.emitReserved("error",e)}},{key:"socket",value:function(e,t){var n=this.nsps[e];return n?this._autoConnect&&!n.active&&n.connect():(n=new la(this,e,t),this.nsps[e]=n),n}},{key:"_destroy",value:function(e){for(var t=0,n=Object.keys(this.nsps);t<n.length;t++)if(this.nsps[n[t]].active)return;this._close()}},{key:"_packet",value:function(e){for(var t=this.encoder.encode(e),n=0;n<t.length;n++)this.engine.write(t[n],e.options)}},{key:"cleanup",value:function(){this.subs.forEach((function(e){return e()})),this.subs.length=0,this.decoder.destroy()}},{key:"_close",value:function(){this.skipReconnect=!0,this._reconnecting=!1,this.onclose("forced close"),this.engine&&this.engine.close()}},{key:"disconnect",value:function(){return this._close()}},{key:"onclose",value:function(e,t){this.cleanup(),this.backoff.reset(),this._readyState="closed",this.emitReserved("close",e,t),this._reconnection&&!this.skipReconnect&&this.reconnect()}},{key:"reconnect",value:function(){var e=this;if(this._reconnecting||this.skipReconnect)return this;var t=this;if(this.backoff.attempts>=this._reconnectionAttempts)this.backoff.reset(),this.emitReserved("reconnect_failed"),this._reconnecting=!1;else{var n=this.backoff.duration();this._reconnecting=!0;var 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You can only invoke reject() in the lexer when the lexer is of the backtracking persuasion (options.backtrack_lexer = true).\n"+this.showPosition(),{text:"",token:null,line:this.yylineno})},less:function(e){this.unput(this.match.slice(e))},pastInput:function(){var e=this.matched.substr(0,this.matched.length-this.match.length);return(e.length>20?"...":"")+e.substr(-20).replace(/\n/g,"")},upcomingInput:function(){var e=this.match;return e.length<20&&(e+=this._input.substr(0,20-e.length)),(e.substr(0,20)+(e.length>20?"...":"")).replace(/\n/g,"")},showPosition:function(){var e=this.pastInput(),t=new Array(e.length+1).join("-");return e+this.upcomingInput()+"\n"+t+"^"},test_match:function(e,t){var n,r,o;if(this.options.backtrack_lexer&&(o={yylineno:this.yylineno,yylloc:{first_line:this.yylloc.first_line,last_line:this.last_line,first_column:this.yylloc.first_column,last_column:this.yylloc.last_column},yytext:this.yytext,match:this.match,matches:this.matches,matched:this.matched,yyleng:this.yyleng,offset:this.offset,_more:this._more,_input:this._input,yy:this.yy,conditionStack:this.conditionStack.slice(0),done:this.done},this.options.ranges&&(o.yylloc.range=this.yylloc.range.slice(0))),(r=e[0].match(/(?:\r\n?|\n).*/g))&&(this.yylineno+=r.length),this.yylloc={first_line:this.yylloc.last_line,last_line:this.yylineno+1,first_column:this.yylloc.last_column,last_column:r?r[r.length-1].length-r[r.length-1].match(/\r?\n?/)[0].length:this.yylloc.last_column+e[0].length},this.yytext+=e[0],this.match+=e[0],this.matches=e,this.yyleng=this.yytext.length,this.options.ranges&&(this.yylloc.range=[this.offset,this.offset+=this.yyleng]),this._more=!1,this._backtrack=!1,this._input=this._input.slice(e[0].length),this.matched+=e[0],n=this.performAction.call(this,this.yy,this,t,this.conditionStack[this.conditionStack.length-1]),this.done&&this._input&&(this.done=!1),n)return n;if(this._backtrack){for(var i in o)this[i]=o[i];return!1}return!1},next:function(){if(this.done)return this.EOF;var e,t,n,r;this._input||(this.done=!0),this._more||(this.yytext="",this.match="");for(var o=this._currentRules(),i=0;i<o.length;i++)if((n=this._input.match(this.rules[o[i]]))&&(!t||n[0].length>t[0].length)){if(t=n,r=i,this.options.backtrack_lexer){if(!1!==(e=this.test_match(n,o[i])))return e;if(this._backtrack){t=!1;continue}return!1}if(!this.options.flex)break}return t?!1!==(e=this.test_match(t,o[r]))&&e:""===this._input?this.EOF:this.parseError("Lexical error on line "+(this.yylineno+1)+". 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11:return t.yytext=t.yytext.substr(1,t.yyleng-2),33;case 12:return 17;case 13:return 31}},rules:[/^(?:\$)/,/^(?:\.\.)/,/^(?:\.)/,/^(?:\*)/,/^(?:[a-zA-Z_]+[a-zA-Z0-9_]*)/,/^(?:\[)/,/^(?:\])/,/^(?:,)/,/^(?:((-?(?:0|[1-9][0-9]*)))?\:((-?(?:0|[1-9][0-9]*)))?(\:((-?(?:0|[1-9][0-9]*)))?)?)/,/^(?:(-?(?:0|[1-9][0-9]*)))/,/^(?:"(?:\\["bfnrt/\\]|\\u[a-fA-F0-9]{4}|[^"\\])*")/,/^(?:'(?:\\['bfnrt/\\]|\\u[a-fA-F0-9]{4}|[^'\\])*')/,/^(?:\(.+?\)(?=\]))/,/^(?:\?\(.+?\)(?=\]))/],conditions:{INITIAL:{rules:[0,1,2,3,4,5,6,7,8,9,10,11,12,13],inclusive:!0}}};return e}();function r(){this.yy={}}return e.lexer=n,r.prototype=e,e.Parser=r,new r}();void 0!==e&&void 0!==n&&(n.parser=o,n.Parser=o.Parser,n.parse=function(){return o.parse.apply(o,arguments)},n.main=function(t){t[1]||(console.log("Usage: "+t[0]+" FILE"),r.exit(1));var o=e("fs").readFileSync(e("path").normalize(t[1]),"utf8");return n.parser.parse(o)},void 0!==t&&e.main===t&&n.main(r.argv.slice(1)))}).call(this,e("_process"))},{_process:14,fs:12,path:13}],2:[function(e,t,n){t.exports={identifier:"[a-zA-Z_]+[a-zA-Z0-9_]*",integer:"-?(?:0|[1-9][0-9]*)",qq_string:'"(?:\\\\["bfnrt/\\\\]|\\\\u[a-fA-F0-9]{4}|[^"\\\\])*"',q_string:"'(?:\\\\['bfnrt/\\\\]|\\\\u[a-fA-F0-9]{4}|[^'\\\\])*'"}},{}],3:[function(e,t,n){var r=e("./dict"),o=e("fs"),i={lex:{macros:{esc:"\\\\",int:r.integer},rules:[["\\$","return 'DOLLAR'"],["\\.\\.","return 'DOT_DOT'"],["\\.","return 'DOT'"],["\\*","return 'STAR'"],[r.identifier,"return 'IDENTIFIER'"],["\\[","return '['"],["\\]","return ']'"],[",","return ','"],["({int})?\\:({int})?(\\:({int})?)?","return 'ARRAY_SLICE'"],["{int}","return 'INTEGER'"],[r.qq_string,"yytext = yytext.substr(1,yyleng-2); return 'QQ_STRING';"],[r.q_string,"yytext = yytext.substr(1,yyleng-2); return 'Q_STRING';"],["\\(.+?\\)(?=\\])","return 'SCRIPT_EXPRESSION'"],["\\?\\(.+?\\)(?=\\])","return 'FILTER_EXPRESSION'"]]},start:"JSON_PATH",bnf:{JSON_PATH:[["DOLLAR",'yy.ast.set({ expression: { type: "root", value: $1 } }); yy.ast.unshift(); return yy.ast.yield()'],["DOLLAR PATH_COMPONENTS",'yy.ast.set({ expression: { type: "root", value: $1 } }); yy.ast.unshift(); return yy.ast.yield()'],["LEADING_CHILD_MEMBER_EXPRESSION","yy.ast.unshift(); return yy.ast.yield()"],["LEADING_CHILD_MEMBER_EXPRESSION PATH_COMPONENTS",'yy.ast.set({ operation: "member", scope: "child", expression: { type: "identifier", value: $1 }}); yy.ast.unshift(); return yy.ast.yield()']],PATH_COMPONENTS:[["PATH_COMPONENT",""],["PATH_COMPONENTS PATH_COMPONENT",""]],PATH_COMPONENT:[["MEMBER_COMPONENT",'yy.ast.set({ operation: "member" }); yy.ast.push()'],["SUBSCRIPT_COMPONENT",'yy.ast.set({ operation: "subscript" }); yy.ast.push() ']],MEMBER_COMPONENT:[["CHILD_MEMBER_COMPONENT",'yy.ast.set({ scope: "child" })'],["DESCENDANT_MEMBER_COMPONENT",'yy.ast.set({ scope: "descendant" })']],CHILD_MEMBER_COMPONENT:[["DOT MEMBER_EXPRESSION",""]],LEADING_CHILD_MEMBER_EXPRESSION:[["MEMBER_EXPRESSION",'yy.ast.set({ scope: "child", operation: "member" })']],DESCENDANT_MEMBER_COMPONENT:[["DOT_DOT MEMBER_EXPRESSION",""]],MEMBER_EXPRESSION:[["STAR",'yy.ast.set({ expression: { type: "wildcard", value: $1 } })'],["IDENTIFIER",'yy.ast.set({ expression: { type: "identifier", value: $1 } })'],["SCRIPT_EXPRESSION",'yy.ast.set({ expression: { type: "script_expression", value: $1 } })'],["INTEGER",'yy.ast.set({ expression: { type: "numeric_literal", value: parseInt($1) } })'],["END",""]],SUBSCRIPT_COMPONENT:[["CHILD_SUBSCRIPT_COMPONENT",'yy.ast.set({ scope: "child" })'],["DESCENDANT_SUBSCRIPT_COMPONENT",'yy.ast.set({ scope: "descendant" })']],CHILD_SUBSCRIPT_COMPONENT:[["[ SUBSCRIPT ]",""]],DESCENDANT_SUBSCRIPT_COMPONENT:[["DOT_DOT [ SUBSCRIPT ]",""]],SUBSCRIPT:[["SUBSCRIPT_EXPRESSION",""],["SUBSCRIPT_EXPRESSION_LIST",'$1.length > 1? yy.ast.set({ expression: { type: "union", value: $1 } }) : $$ = $1']],SUBSCRIPT_EXPRESSION_LIST:[["SUBSCRIPT_EXPRESSION_LISTABLE","$$ = [$1]"],["SUBSCRIPT_EXPRESSION_LIST , SUBSCRIPT_EXPRESSION_LISTABLE","$$ = $1.concat($3)"]],SUBSCRIPT_EXPRESSION_LISTABLE:[["INTEGER",'$$ = { expression: { type: "numeric_literal", value: parseInt($1) } }; yy.ast.set($$)'],["STRING_LITERAL",'$$ = { expression: { type: "string_literal", value: $1 } }; yy.ast.set($$)'],["ARRAY_SLICE",'$$ = { expression: { type: "slice", value: $1 } }; yy.ast.set($$)']],SUBSCRIPT_EXPRESSION:[["STAR",'$$ = { expression: { type: "wildcard", value: $1 } }; yy.ast.set($$)'],["SCRIPT_EXPRESSION",'$$ = { expression: { type: "script_expression", value: $1 } }; yy.ast.set($$)'],["FILTER_EXPRESSION",'$$ = { expression: { type: "filter_expression", value: $1 } }; yy.ast.set($$)']],STRING_LITERAL:[["QQ_STRING","$$ = $1"],["Q_STRING","$$ = $1"]]}};o.readFileSync&&(i.moduleInclude=o.readFileSync(e.resolve("../include/module.js")),i.actionInclude=o.readFileSync(e.resolve("../include/action.js"))),t.exports=i},{"./dict":2,fs:12}],4:[function(e,t,n){var r=e("./aesprim"),o=e("./slice"),i=e("static-eval"),a=e("underscore").uniq,s=function(){return this.initialize.apply(this,arguments)};function c(t,n,o){var i=e("./index"),a=f(r.parse(n).body[0].expression,{"@":t.value}),s=o.replace(/\{\{\s*value\s*\}\}/g,a),c=i.nodes(t.value,s);return c.forEach((function(e){e.path=t.path.concat(e.path.slice(1))})),c}function l(e){return Array.isArray(e)}function u(e){return function(t,n,r,o){var i=t.value,a=t.path,s=[],c=function(t,i){var a;l(t)?(t.forEach((function(e,t){s.length>=o||r(t,e,n)&&s.push({path:i.concat(t),value:e})})),t.forEach((function(t,n){s.length>=o||e&&c(t,i.concat(n))}))):(a=t)&&!(a instanceof Array)&&a instanceof Object&&(this.keys(t).forEach((function(e){s.length>=o||r(e,t[e],n)&&s.push({path:i.concat(e),value:t[e]})})),this.keys(t).forEach((function(n){s.length>=o||e&&c(t[n],i.concat(n))})))}.bind(this);return c(i,a),s}}function d(e){return function(t,n,r){return this.descend(n,t.expression.value,e,r)}}function A(e){return function(t,n,r){return this.traverse(n,t.expression.value,e,r)}}function f(){try{return i.apply(this,arguments)}catch(e){}}function h(e){return e=e.filter((function(e){return e})),a(e,(function(e){return e.path.map((function(e){return String(e).replace("-","--")})).join("-")}))}function g(e){var t=String(e);return t.match(/^-?[0-9]+$/)?parseInt(t):null}s.prototype.initialize=function(){this.traverse=u(!0),this.descend=u()},s.prototype.keys=Object.keys,s.prototype.resolve=function(e){var t=[e.operation,e.scope,e.expression.type].join("-"),n=this._fns[t];if(!n)throw new Error("couldn't resolve key: "+t);return n.bind(this)},s.prototype.register=function(e,t){if(!t instanceof Function)throw new Error("handler must be a function");this._fns[e]=t},s.prototype._fns={"member-child-identifier":function(e,t){var n=e.expression.value,r=t.value;if(r instanceof Object&&n in r)return[{value:r[n],path:t.path.concat(n)}]},"member-descendant-identifier":A((function(e,t,n){return e==n})),"subscript-child-numeric_literal":d((function(e,t,n){return e===n})),"member-child-numeric_literal":d((function(e,t,n){return String(e)===String(n)})),"subscript-descendant-numeric_literal":A((function(e,t,n){return e===n})),"member-child-wildcard":d((function(){return!0})),"member-descendant-wildcard":A((function(){return!0})),"subscript-descendant-wildcard":A((function(){return!0})),"subscript-child-wildcard":d((function(){return!0})),"subscript-child-slice":function(e,t){if(l(t.value)){var n=e.expression.value.split(":").map(g),r=t.value.map((function(e,n){return{value:e,path:t.path.concat(n)}}));return o.apply(null,[r].concat(n))}},"subscript-child-union":function(e,t){var n=[];return e.expression.value.forEach((function(e){var r={operation:"subscript",scope:"child",expression:e.expression},o=this.resolve(r)(r,t);o&&(n=n.concat(o))}),this),h(n)},"subscript-descendant-union":function(t,n,r){var o=e(".."),i=this,a=[];return o.nodes(n,"$..*").slice(1).forEach((function(e){a.length>=r||t.expression.value.forEach((function(t){var n={operation:"subscript",scope:"child",expression:t.expression},r=i.resolve(n)(n,e);a=a.concat(r)}))})),h(a)},"subscript-child-filter_expression":function(e,t,n){var o=e.expression.value.slice(2,-1),i=r.parse(o).body[0].expression;return this.descend(t,null,(function(e,t){return f(i,{"@":t})}),n)},"subscript-descendant-filter_expression":function(e,t,n){var o=e.expression.value.slice(2,-1),i=r.parse(o).body[0].expression;return this.traverse(t,null,(function(e,t){return f(i,{"@":t})}),n)},"subscript-child-script_expression":function(e,t){return c(t,e.expression.value.slice(1,-1),"$[{{value}}]")},"member-child-script_expression":function(e,t){return c(t,e.expression.value.slice(1,-1),"$.{{value}}")},"member-descendant-script_expression":function(e,t){return c(t,e.expression.value.slice(1,-1),"$..value")}},s.prototype._fns["subscript-child-string_literal"]=s.prototype._fns["member-child-identifier"],s.prototype._fns["member-descendant-numeric_literal"]=s.prototype._fns["subscript-descendant-string_literal"]=s.prototype._fns["member-descendant-identifier"],t.exports=s},{"..":"jsonpath","./aesprim":"./aesprim","./index":5,"./slice":7,"static-eval":15,underscore:12}],5:[function(e,t,n){var r=e("assert"),o=e("./dict"),i=e("./parser"),a=e("./handlers"),s=function(){this.initialize.apply(this,arguments)};function c(e){return"[object String]"==Object.prototype.toString.call(e)}s.prototype.initialize=function(){this.parser=new i,this.handlers=new a},s.prototype.parse=function(e){return r.ok(c(e),"we need a 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r=i.resolve(e),c=[];a.forEach((function(i){if(!(s.length>=n)){var a=r(e,i,n);t==o.length-1?s=s.concat(a||[]):c=c.concat(a||[])}})),a=c}})),n?s.slice(0,n):s):a},s.prototype.stringify=function(e){r.ok(e,"we need a path");var t="$",n={"descendant-member":"..{{value}}","child-member":".{{value}}","descendant-subscript":"..[{{value}}]","child-subscript":"[{{value}}]"};return(e=this._normalize(e)).forEach((function(e){if("root"!=e.expression.type){var r,o=[e.scope,e.operation].join("-"),i=n[o];if(r="string_literal"==e.expression.type?JSON.stringify(e.expression.value):e.expression.value,!i)throw new Error("couldn't find template "+o);t+=i.replace(/{{value}}/,r)}})),t},s.prototype._normalize=function(e){if(r.ok(e,"we need a path"),"string"==typeof e)return this.parser.parse(e);if(Array.isArray(e)&&"string"==typeof e[0]){var t=[{expression:{type:"root",value:"$"}}];return e.forEach((function(e,n){"$"==e&&0===n||("string"==typeof e&&e.match("^"+o.identifier+"$")?t.push({operation:"member",scope:"child",expression:{value:e,type:"identifier"}}):t.push({operation:"subscript",scope:"child",expression:{value:e,type:"number"==typeof e?"numeric_literal":"string_literal"}}))})),t}if(Array.isArray(e)&&"object"==X(e[0]))return e;throw new Error("couldn't understand path "+e)},s.Handlers=a,s.Parser=i;var l=new s;l.JSONPath=s,t.exports=l},{"./dict":2,"./handlers":4,"./parser":6,assert:8}],6:[function(e,t,n){var r=e("./grammar"),o=e("../generated/parser"),i=function(){var e=new o.Parser,t=e.parseError;return e.yy.parseError=function(){e.yy.ast&&e.yy.ast.initialize(),t.apply(e,arguments)},e};i.grammar=r,t.exports=i},{"../generated/parser":1,"./grammar":3}],7:[function(e,t,n){function r(e){return String(e).match(/^[0-9]+$/)?parseInt(e):Number.isFinite(e)?parseInt(e,10):0}t.exports=function(e,t,n,o){if("string"==typeof t)throw new Error("start cannot be a string");if("string"==typeof n)throw new Error("end cannot be a 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n=0;n<e.length;n++)if(e[n]!==t[n])return!1;return!0}return r.isDate(e)&&r.isDate(t)?e.getTime()===t.getTime():r.isRegExp(e)&&r.isRegExp(t)?e.source===t.source&&e.global===t.global&&e.multiline===t.multiline&&e.lastIndex===t.lastIndex&&e.ignoreCase===t.ignoreCase:r.isObject(e)||r.isObject(t)?function(e,t){if(r.isNullOrUndefined(e)||r.isNullOrUndefined(t))return!1;if(e.prototype!==t.prototype)return!1;if(r.isPrimitive(e)||r.isPrimitive(t))return e===t;var n=A(e),i=A(t);if(n&&!i||!n&&i)return!1;if(n)return d(e=o.call(e),t=o.call(t));var a,s,c=g(e),l=g(t);if(c.length!=l.length)return!1;for(c.sort(),l.sort(),s=c.length-1;s>=0;s--)if(c[s]!=l[s])return!1;for(s=c.length-1;s>=0;s--)if(!d(e[a=c[s]],t[a]))return!1;return!0}(e,t):e==t}function A(e){return"[object Arguments]"==Object.prototype.toString.call(e)}function f(e,t){return!(!e||!t)&&("[object RegExp]"==Object.prototype.toString.call(t)?t.test(e):e instanceof t||!0===t.call({},e))}function h(e,t,n,o){var i;r.isString(n)&&(o=n,n=null);try{t()}catch(e){i=e}if(o=(n&&n.name?" 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r=t[n],o=t[n+1],a=o.wordIndex-r.wordIndex;if(1===a||-1===a){e.score+=1,1===a&&(e.score+=1);const t=Math.abs(o.position-(r.position+i[r.wordIndex].length))-1;e.score-=.05*t}}}return s}function su(e){return"string"==typeof e.id}function cu(e){return"string"==typeof e.sub&&"string"==typeof e.pred&&"string"==typeof e.obj}function lu(e){return Boolean(e.meta?.deprecated)}var uu,du,Au=(du||(du=1,uu=function e(t,n){if(t===n)return!0;if(t&&n&&"object"==X(t)&&"object"==X(n)){if(t.constructor!==n.constructor)return!1;var r,o,i;if(Array.isArray(t)){if((r=t.length)!=n.length)return!1;for(o=r;0!=o--;)if(!e(t[o],n[o]))return!1;return!0}if(t instanceof Map&&n instanceof Map){if(t.size!==n.size)return!1;var a,s=F(t.entries());try{for(s.s();!(a=s.n()).done;)if(!n.has((o=a.value)[0]))return!1}catch(e){s.e(e)}finally{s.f()}var c,l=F(t.entries());try{for(l.s();!(c=l.n()).done;)if(!e((o=c.value)[1],n.get(o[0])))return!1}catch(e){l.e(e)}finally{l.f()}return!0}if(t instanceof Set&&n instanceof Set){if(t.size!==n.size)return!1;var u,d=F(t.entries());try{for(d.s();!(u=d.n()).done;)if(!n.has((o=u.value)[0]))return!1}catch(e){d.e(e)}finally{d.f()}return!0}if(ArrayBuffer.isView(t)&&ArrayBuffer.isView(n)){if((r=t.length)!=n.length)return!1;for(o=r;0!=o--;)if(t[o]!==n[o])return!1;return!0}if(t.constructor===RegExp)return t.source===n.source&&t.flags===n.flags;if(t.valueOf!==Object.prototype.valueOf)return t.valueOf()===n.valueOf();if(t.toString!==Object.prototype.toString)return t.toString()===n.toString();if((r=(i=Object.keys(t)).length)!==Object.keys(n).length)return!1;for(o=r;0!=o--;)if(!Object.prototype.hasOwnProperty.call(n,i[o]))return!1;for(o=r;0!=o--;){var A=i[o];if(!e(t[A],n[A]))return!1}return!0}return t!=t&&n!=n}),uu),fu=ce(Au);async function hu(e){return function(e,t){var n=arguments.length>2&&void 0!==arguments[2]?arguments[2]:{},r=n.blocked,o=n.upgrade,i=n.blocking,a=n.terminated,s=indexedDB.open(e,t),c=kl(s);return o&&s.addEventListener("upgradeneeded",(function(e){o(kl(s.result),e.oldVersion,e.newVersion,kl(s.transaction),e)})),r&&s.addEventListener("blocked",(function(e){return r(e.oldVersion,e.newVersion,e)})),c.then((function(e){a&&e.addEventListener("close",(function(){return a()})),i&&e.addEventListener("versionchange",(function(e){return i(e.oldVersion,e.newVersion,e)}))})).catch((function(){})),c}(e,2,{upgrade(e,t,n,r,o){if(t<2&&(e.objectStoreNames.contains("meta")&&e.deleteObjectStore("meta"),e.objectStoreNames.contains("nodes")&&e.deleteObjectStore("nodes"),e.objectStoreNames.contains("edges")&&e.deleteObjectStore("edges")),e.objectStoreNames.contains("meta")||e.createObjectStore("meta"),!e.objectStoreNames.contains("nodes")){e.createObjectStore("nodes",{keyPath:"id"});const t=r.objectStore("nodes");t.createIndex("by-label","lbl"),t.createIndex("by-type","type"),t.createIndex("by-synonym",["meta","synonyms","val"]),t.createIndex("full-text-words","fullTextWords",{multiEntry:!0})}if(!e.objectStoreNames.contains("edges")){e.createObjectStore("edges",{autoIncrement:!0});const t=r.objectStore("edges");t.createIndex("by-subject","sub"),t.createIndex("by-object","obj"),t.createIndex("by-predicate","pred")}}})}function gu(e){const t=new Set;for(const[,n]of e)t.add(n);return[...t]}async function pu(e){const t=Date.now();let n,r=1;this.options.update?.("Parsing JSON",r);try{n=JSON.parse(await p.openLocation(this.sourceLocation).readFile("utf8"))}catch{throw new Error("Error in loading ontology")}r+=5,this.options.update?.("Parsing JSON complete",r);const o=Date.now(),[i,...a]=n.graphs??[];if(i){if(a.length>0)throw new Error("multiple graphs not supported");try{const n=e.transaction(["meta","nodes","edges"],"readwrite");await n.objectStore("meta").clear(),await n.objectStore("nodes").clear(),await n.objectStore("edges").clear();const a=n.objectStore("nodes"),s=mu.call(this).map((e=>e.jsonPath));if(i.nodes){let e=Math.round(r);for(const[,t]of i.nodes.entries())r+=1/i.nodes.length*64,Math.round(r)!=e&&r<100&&(this.options.update?.("Processing nodes",r),e=Math.round(r)),su(t)&&await a.add({...t,fullTextWords:gu(ou(t,s,this.prefixes))})}const c=n.objectStore("edges");if(i.edges){let e=Math.round(r);for(const[,t]of i.edges.entries())r+=1/i.edges.length*30,Math.round(r)!=e&&r<100&&(this.options.update?.("Processing edges",r),e=Math.round(r)),cu(t)&&await c.add(t)}await n.done;const l=e.transaction("meta","readwrite"),{update:u,...d}=this.options;await l.objectStore("meta").add({ontologyRecord:{name:this.ontologyName,version:this.ontologyVersion,sourceLocation:this.sourceLocation},storeOptions:d,graphMeta:i.meta,timestamp:String(new Date),schemaVersion:2,timings:{overall:Date.now()-t,load:Date.now()-o}},"meta"),await l.done}catch(t){throw await e.transaction("meta","readwrite").objectStore("meta").clear(),t}}}function mu(){return[{displayName:"ID",jsonPath:Zl},...this.options.textIndexing?.indexFields??Cu]}async function yu(e){const[t]=await e.transaction("meta").objectStore("meta").getAll();return!!t&&fu(this.options.prefixes,t.storeOptions.prefixes)&&fu(this.options.textIndexing,t.storeOptions.textIndexing)}class _u{ontologyName;ontologyVersion;sourceLocation;db;options;loadOboGraphJson=pu;getTermsByFulltext=iu;openDatabase=hu;isDatabaseCurrent=yu;get textIndexFields(){return mu.call(this)}get prefixes(){return this.options.prefixes??new Map}DEFAULT_MAX_SEARCH_RESULTS=100;constructor(e,t,n,r){this.ontologyName=e,this.ontologyVersion=t,this.sourceLocation=n,this.options=r??{},this.db=this.prepareDatabase()}validate(){const e=[],{sourceLocation:t,sourceType:n}=this;return n?"obo-graph-json"!==n&&e.push(new Error(`ontology source file ${JSON.stringify(t)} has type ${n}, which is not yet supported`)):e.push(new Error(`unable to determine format of ontology source file ${JSON.stringify(t)}, file name must end with ".json", ".obo", or ".owl"`)),e}get sourceType(){if(o.isUriLocation(this.sourceLocation)){if(this.sourceLocation.uri.endsWith(".json"))return"obo-graph-json"}else if(o.isLocalPathLocation(this.sourceLocation)&&this.sourceLocation.localPath.endsWith(".json"))return"obo-graph-json"}get dbName(){return`Apollo Ontology "${this.ontologyName}" "${this.ontologyVersion}"`}async prepareDatabase(){const e=this.validate();if(e.length>0)throw e;const t=await this.openDatabase(this.dbName);if(await this.isDatabaseCurrent(t))return t;try{const{options:e,sourceLocation:n,sourceType:r}=this;if("obo-graph-json"!==r)throw new Error(`ontology source file ${JSON.stringify(n)} has type ${r}, which is not yet supported`);return e.update?.("",0),await this.loadOboGraphJson(t),e.update?.("",100),t}catch(e){throw t.close(),await function(e){var t=(arguments.length>1&&void 0!==arguments[1]?arguments[1]:{}).blocked,n=indexedDB.deleteDatabase(e);return t&&n.addEventListener("blocked",(function(e){return t(e.oldVersion,e)})),kl(n).then((function(){}))}(this.dbName),e}}async termCount(e){const t=await this.db;return(e??t.transaction("nodes")).objectStore("nodes").count()}unique(e){const t=new Map,n=[];for(const r of e)t.has(r.id)||(t.set(r.id,!0),n.push(r));return n}async getTermsWithLabelOrSynonym(e,t,n){const r=t?.includeSubclasses??!0,o=await this.db,i=n??o.transaction(["nodes","edges"]),a=i.objectStore("nodes"),s=[...await a.index("by-label").getAll(e),...await a.index("by-synonym").getAll(e)];if(r){const e=await this.recurseEdges("by-object",s.map((e=>e.id)),(e=>"is_a"===e.pred),"sub",i);for(const t of e){const e=await a.get(t);e&&s.push(e)}}return s}async getPropertiesByLabel(e,t,n){const r=t?.includeSubProperties??!0,o=await this.db,i=n??o.transaction(["nodes","edges"]),a=(await this.getTermsWithLabelOrSynonym(e,{includeSubclasses:!1},i)).filter((e=>Eu(e)));if(r){const e=await this.recurseEdges("by-object",a.map((e=>e.id)),(e=>"subPropertyOf"===e.pred),"sub",i),t=i.objectStore("nodes");for(const n of e){const e=await t.get(n);e&&Eu(e)&&a.push(e)}}return a}async recurseEdges(e,t,n,r,o){const i=new Set;return await async function t(a){await Promise.all([...a].map((async a=>{const s=(await o.objectStore("edges").index(e).getAll(a)).filter((e=>n(e))).map((e=>e[r]));if(s.length>0){for(const e of s)i.add(e);await t(s)}})))}(t),i.values()}async*expandNodeSet(e,t="is_a",n,r){const o=await this.db,i=r??o.transaction(["edges"]),a=[...e],s=await this.recurseEdges("subclasses"===n?"by-object":"by-subject",a,(e=>e.pred===t),"subclasses"===n?"sub":"obj",i);for(const e of a)yield e;for(const e of s)yield e}expandSubclasses(e,t="is_a",n){return this.expandNodeSet(e,t,"subclasses",n)}expandSuperclasses(e,t="is_a",n){return this.expandNodeSet(e,t,"superclasses",n)}async getClassesThat(e,t,n){const r=await this.db,o=n??r.transaction(["nodes","edges"]),i=await this.getPropertiesByLabel(e,{includeSubProperties:!0},o),a=new Set(i.map((e=>e.id))),s=await async function(e){const t=[];for await(const n of e)t.push(n);return t}(this.expandSuperclasses(t.map((e=>e.id)),"is_a",o)),c=await this.recurseEdges("by-object",s,(e=>a.has(e.pred)),"sub",o),l=this.expandSubclasses(c,"is_a",o),u=[];for await(const e of l){const t=await o.objectStore("nodes").get(e);t&&wu(t)&&!lu(t)&&u.push(t)}return u}async getClassesWithoutPropertyLabeled(e,t,n){const r=await this.db,o=n??r.transaction(["nodes","edges"]),i=o.objectStore("nodes"),a=o.objectStore("edges"),s=(await this.getPropertiesByLabel(e,t,o)).map((e=>e.id)),c=await(async()=>{const e=new Set;for(const t of s)for await(const n of a.index("by-predicate").iterate(t))e.add(n.value.sub);const t=new Set;for await(const n of this.expandSubclasses(e,"is_a",o))t.add(n);return t})(),l=[];for await(const e of i){const t=e.value;wu(t)&&!c.has(t.id)&&l.push(t.id)}const u=[];for(const e of l){const t=await o.objectStore("nodes").get(e);t&&wu(t)&&!lu(t)&&u.push(t)}return u}async getAllClasses(e){const t=await this.db,n=e??t.transaction(["nodes"]);return(await n.objectStore("nodes").index("by-type").getAll("CLASS")).filter((e=>!lu(e)))}async getAllTerms(e){const t=await this.db,n=e??t.transaction(["nodes"]);return(await n.objectStore("nodes").getAll()).filter((e=>!lu(e)))}}const vu=c.types.model("OntologyRecord",{name:c.types.string,version:"unversioned",source:c.types.union(g.LocalPathLocation,g.UriLocation,g.BlobLocation),options:c.types.frozen(),equivalentTypes:c.types.map(c.types.array(c.types.string))}).volatile((e=>({dataStore:void 0,startedEquivalentTypeRequests:new Set}))).actions((e=>({ping(){},initDataStore(){e.dataStore=new _u(e.name,e.version,c.getSnapshot(e.source),e.options)},afterCreate(){c.addDisposer(e,l.autorun((()=>{this.initDataStore()})))},setEquivalentTypes(t,n){e.equivalentTypes.set(t,n)}}))).actions((e=>({loadEquivalentTypes:c.flow((function*(t){if(!e.dataStore)return;if(e.startedEquivalentTypeRequests.has(t))return;e.startedEquivalentTypeRequests.add(t);const n=(yield e.dataStore.getTermsWithLabelOrSynonym(t)).map((e=>e.lbl)).filter((e=>null!=e));c.isAlive(e)&&e.setEquivalentTypes(t,n)}))}))).actions((e=>({afterCreate(){l.autorun((t=>{e.dataStore&&(e.loadEquivalentTypes("gene"),e.loadEquivalentTypes("pseudogene"),e.loadEquivalentTypes("transcript"),e.loadEquivalentTypes("pseudogenic_transcript"),e.loadEquivalentTypes("CDS"),e.loadEquivalentTypes("mRNA"),t.dispose())}))},setEquivalentTypes(t,n){e.equivalentTypes.set(t,n)}}))).views((e=>({isTypeOf(t,n){if(t===n)return!0;if(!e.dataStore)return!1;const r=e.equivalentTypes.get(n);return r?r.includes(t):(e.loadEquivalentTypes(n),!1)}}))),bu=c.types.model("OntologyManager",{ontologies:c.types.array(vu),prefixes:c.types.optional(c.types.map(c.types.string),{"GO:":"http://purl.obolibrary.org/obo/GO_","SO:":"http://purl.obolibrary.org/obo/SO_"})}).views((e=>({get featureTypeOntologyName(){const t=c.getRoot(e).jbrowse.configuration;return n.readConfObject(t.ApolloPlugin,"featureTypeOntologyName")}}))).views((e=>({get featureTypeOntology(){return this.findOntology(e.featureTypeOntologyName)},findOntology:(t,n)=>e.ontologies.find((e=>e.name===t&&(void 0===n||e.version===n))),openOntology(e,t){return this.findOntology(e,t)?.dataStore},applyPrefixes:t=>Xl(t,e.prefixes),expandPrefixes:t=>function(e,t){for(const[n,r]of t.entries())if(e.startsWith(String(n)))return e.replace(String(n),r);return e}(t,e.prefixes)}))).actions((e=>({addOntology(t,n,r,o){const i=e.ontologies.push({name:t,version:n,source:r,options:{prefixes:new Map(e.prefixes.entries()),...o}});e.ontologies[i-1].ping()}}))),Cu=[{displayName:"Label",jsonPath:"$.lbl"},{displayName:"Synonym",jsonPath:"$.meta.synonyms[*].val"},{displayName:"Definition",jsonPath:"$.meta.definition.val"}],Iu=n.ConfigurationSchema("OntologyRecord",{name:{type:"string",description:'the full name of the ontology, e.g. "Gene Ontology"',defaultValue:"My Ontology"},version:{type:"string",description:"the ontology's version string",defaultValue:"unversioned"},source:{type:"fileLocation",description:"the download location for the ontology's source file",defaultValue:{locationType:"UriLocation",uri:"http://example.com/myontology.json"}},textIndexFields:{type:"frozen",description:"JSON paths for text fields that will be indexed for text searching",defaultValue:Cu}});function wu(e){return"CLASS"===e.type}function Eu(e){return"PROPERTY"===e.type}async function xu(e,t,n){if(!e)return;const r=await t.getTermsWithLabelOrSynonym(e.type,{includeSubclasses:!1}),o=r.filter(wu);if(0===r.length)return;const i=await t.getClassesThat("part_of",o);return 0!==i.length?i:void 0}function Su({fetchValidTerms:e,filterTerms:t,includeDeprecated:n,onChange:r,ontologyName:o,ontologyVersion:a,renderInput:c,session:l,style:d,value:A}){const[f,h]=u.useState(!1),[g,p]=u.useState(),[m,y]=u.useState(""),[_,v]=u.useState(),{ontologyManager:b}=l.apolloDataStore,C=b.findOntology(o,a)?.dataStore,I=C&&f&&!g,w=C&&!_,E=u.useCallback((e=>(n||!lu(e))&&(!t||t(e))),[t,n]);u.useEffect((()=>{const e=new AbortController,{signal:t}=e;return w&&async function(e,t,n,r){if(!t)return;const o=(await e.getTermsWithLabelOrSynonym(t,{includeSubclasses:!1})).find((e=>(n??(()=>!0))(e)));if(!o)throw new Error(`not a valid ${e.ontologyName} term`);return o}(C,A,E).then((e=>{y(""),t.aborted||v(e)}),(e=>{t.aborted||Hl(e)||y(String(e))})),()=>{e.abort(new DOMException("Cancel getting current term from ontology store","AbortError"))}}),[l,A,E,C,w]),u.useEffect((()=>{const t=new AbortController,{signal:n}=t;return I&&async function(e,t,n,r){let o;if(t){const n=await t(e,r);n&&(o=n)}return o||(o=await e.getAllTerms()),n?o.filter((e=>n(e))):o}(C,e,E,n).then((e=>{e&&!n.aborted&&p(e)}),(e=>{n.aborted||Hl(e)||l.notify(e instanceof Error?e.message:String(e),"error")})),()=>{t.abort(new DOMException("Canceling getting valid terms from ontology store","AbortError"))}}),[I,E,C,l,e]);const x={};return m&&(x.error=!0,x.helperText=m),i.jsx(s.Autocomplete,{style:d,autoComplete:!0,filterSelectedOptions:!0,disableClearable:!0,selectOnFocus:!0,clearOnBlur:!0,handleHomeEndKeys:!0,freeSolo:!0,value:A,options:g??[],onOpen:()=>{h(!0)},onClose:()=>{h(!1)},loading:I,renderInput:c??(e=>i.jsx(s.TextField,{...e,...x})),getOptionLabel:e=>"string"==typeof e?e:e.lbl??"",isOptionEqualToValue:(e,t)=>e.lbl===t.lbl,onChange:(e,t)=>{t&&("string"==typeof t?(v(void 0),r(A,t)):t.lbl!==A&&(y(""),v(t),r(A,t.lbl)))}})}function Bu({changeManager:e,handleClose:t,session:n,sourceAssemblyId:r,sourceFeature:o}){const[a,c]=u.useState(String(o.max)),[l,d]=u.useState(String(o.min+1)),[A,f]=u.useState(""),[h,g]=u.useState(""),[p,m]=u.useState(""),y=Number(a)<=Number(l);return i.jsxs(Al,{open:!0,title:"Add new child feature",handleClose:t,maxWidth:!1,"data-testid":"add-feature-dialog",children:[i.jsxs("form",{onSubmit:function(i){i.preventDefault(),g("");const s=(new ut).toHexString(),c=new Nr({changedIds:[o._id],typeName:"AddFeatureChange",assembly:r,addedFeature:{_id:s,refSeq:o.refSeq,min:Number(l)-1,max:Number(a),type:A},parentFeatureId:o._id});e.submit(c).then((()=>{n.apolloSetSelectedFeature(s)})),t(),i.preventDefault()},children:[i.jsxs(s.DialogContent,{style:{display:"flex",flexDirection:"column"},children:[i.jsx(s.TextField,{margin:"dense",id:"start",label:"Start",type:"number",fullWidth:!0,variant:"outlined",value:l,onChange:e=>{d(e.target.value)}}),i.jsx(s.TextField,{margin:"dense",id:"end",label:"End",type:"number",fullWidth:!0,variant:"outlined",value:a,onChange:e=>{c(e.target.value)},error:y,helperText:y?'"End" must be greater than "Start"':null}),i.jsx(Su,{session:n,ontologyName:"Sequence Ontology",style:{width:170},value:A,filterTerms:wu,fetchValidTerms:async function(e,t,n){const r=await xu(e,t);if(r)return r;m(`Type "${e?.type}" does not have any children in the ontology`)}.bind(null,o),renderInput:e=>i.jsx(s.TextField,{...e,label:"Type",variant:"outlined",fullWidth:!0,error:Boolean(p),helperText:p}),onChange:(e,t)=>{var n;t&&(n=t,g(""),f(n))}})]}),i.jsxs(s.DialogActions,{children:[i.jsx(s.Button,{variant:"contained",type:"submit",disabled:y||!(l&&a&&A),children:"Submit"}),i.jsx(s.Button,{variant:"outlined",type:"submit",onClick:t,children:"Cancel"})]})]}),h?i.jsx(s.DialogContent,{children:i.jsx(s.DialogContentText,{color:"error",children:h})}):null]})}class ku{clientStore;constructor(e){this.clientStore=e}}class Qu{dataStore;constructor(e){this.dataStore=e}recentChanges=[];undoneChanges=[];async submit(e,t={}){const{addToRecents:n=!0,submitToBackend:r=!0,updateJobsManager:i=!1}=t,a=o.getSession(this.dataStore),s=new AbortController,{jobsManager:c,isLocked:l,changeInProgress:u,setChangeInProgress:d}=o.getSession(this.dataStore);if(l)return a.notify("Cannot submit changes in locked mode"),void d(!1);if(u)return void a.notify("Could not submit change, there is another change still in progress");d(!0);const A={name:e.typeName,statusMessage:"Pre-validating",progressPct:0,cancelCallback:()=>{s.abort(new DOMException(`Cancelling change "${e.typeName}"`,"AbortError"))}};i&&c.runJob(A);const f=await co.frontendPreValidate(e);if(!f.ok){const e=`Pre-validation failed: "${f.resultsMessages}"`;return i&&c.abortJob(A.name,e),a.notify(e,"error"),void d(!1)}try{await e.execute(this.dataStore)}catch(e){return i&&c.abortJob(A.name,String(e)),console.error(e),a.notify(`Error encountered in client: ${String(e)}. Data may be out of sync, please refresh the page`,"error"),void d(!1)}if((await co.frontendPostValidate(e,this.dataStore)).ok||await this.undo(e),r){i&&c.update(A.name,"Submitting to driver");const{collaborationServerDriver:r,getBackendDriver:o}=this.dataStore,s=ie(e)?o(e.assembly)??r:r;let l;try{l=await s.submitChange(e,t)}catch(t){return i&&c.abortJob(A.name,String(t)),console.error(t),a.notify(String(t),"error"),await this.undo(e,!1),void d(!1)}if(!l.ok){const t=`Post-validation failed: "${f.resultsMessages}"`;return i&&c.abortJob(A.name,t),a.notify(t,"error"),await this.undo(e,!1),void d(!1)}e.notification&&a.notify(e.notification,"success"),n&&(this.recentChanges.push(e),this.undoneChanges=[])}i&&c.done(A),d(!1)}async undo(e,t=!0){const n=e.getInverse();return this.submit(n,{submitToBackend:t,addToRecents:!1})}async redo(e,t=!0){return this.submit(e,{submitToBackend:t,addToRecents:!1})}async undoLastChange(){const e=o.getSession(this.dataStore),t=this.recentChanges.pop();if(t)return this.undoneChanges.push(t),this.undo(t);e.notify("No changes to undo!","info")}async redoLastChange(){const e=o.getSession(this.dataStore),t=this.undoneChanges.pop();if(t)return this.recentChanges.push(t),this.redo(t);e.notify("No changes to redo!","info")}}class Nu extends ku{inFlight=new Map;refSeqMaps=new Map;async fetch(e,t,n){return e.getFetcher({locationType:"UriLocation",uri:t.toString()})(t,n)}async searchFeatures(e,t){const n=this.clientStore.getInternetAccount(t[0]),{baseURL:r}=n,o=new URL("features/searchFeatures",r),i=new URLSearchParams({assemblies:t.join(","),term:e});o.search=i.toString();const a=o.toString(),s=await this.fetch(n,a);if(!s.ok){const e=await ll(s,"searchFeatures failed");throw new Error(e)}return s.json()}async getFeatures(e){const{assemblyName:t,end:n,refName:r,start:i}=e,{assemblyManager:a}=o.getSession(this.clientStore);if(!a.get(t))throw new Error(`Could not find assembly with name "${t}"`);const s=(await this.getRefSeqMapping(t)).get(r);if(!s)throw new Error(`Could not find refSeq "${r}"`);const c=s.id,l=this.clientStore.getInternetAccount(t),{baseURL:u}=l,d=new URL("features/getFeatures",u),A=new URLSearchParams({refSeq:c,start:String(i),end:String(n)});d.search=A.toString();const f=d.toString(),h=await this.fetch(l,f);if(!h.ok){const e=await ll(h,"getFeatures failed");throw new Error(e)}return this.checkSocket(t,r,l),h.json()}checkSocket(e,t,n){const{socket:r}=n,o=n.retrieveToken();if(!o)return;const i=vo(o),a=`${e}-${t}`,s=new Qu(this.clientStore);r.hasListeners(a)||r.on(a,(async e=>{if(n.setLastChangeSequenceNumber(Number(e.changeSequence)),e.userSessionId===i)return;const t=oe.fromJSON(e.changeInfo);var r;ie(r=t)&&void 0!==r.changedIds&&this.haveDataForChange(t)&&await s.submit(t,{submitToBackend:!1})}))}haveDataForChange(e){const{assembly:t,changedIds:n}=e;if(!this.clientStore.assemblies.get(t))return!1;for(const e of n)if(this.clientStore.getFeature(e))return!0;return!1}async getSequence(e){const t=`${e.refName}:${e.start}-${e.end}`,n=this.inFlight.get(t),{assemblyName:r,end:i,refName:a,start:s}=e,{assemblyManager:c}=o.getSession(this.clientStore);if(!c.get(r))throw new Error(`Could not find assembly with name "${r}"`);const l=(await this.getRefSeqMapping(r)).get(a);if(!l)throw new Error(`Could not find refSeq "${a}"`);const u=l.id;if(n)return{seq:await n,refSeq:u};let d=this.clientStore.assemblies.get(r);d||(d=this.clientStore.addAssembly(r));let A=d.refSeqs.get(u);A||(A=d.addRefSeq(u,a));const f=A.getSequence(s,i);if(f.length===i-s)return{seq:f,refSeq:u};const h=this.clientStore.getInternetAccount(r),{baseURL:g}=h,p=new URL("sequence",g),m=new URLSearchParams({refSeq:u,start:String(s),end:String(i)});p.search=m.toString();const y=p.toString(),_=this.getSeqFromServer(h,y,A,s,i);this.inFlight.set(t,_);const v=await _;return this.checkSocket(r,a,h),this.inFlight.delete(t),{seq:v,refSeq:u}}async getSeqFromServer(e,t,n,r,o){const i=await this.fetch(e,t);if(!i.ok){let e;try{e=await i.text()}catch{e=""}throw new Error(`getSequence failed: ${i.status} (${i.statusText})${e?` (${e})`:""}`)}const a=await i.text();return n.addSequence({sequence:a,start:r,stop:o}),a}async getRefSeqMapping(e){const t=this.refSeqMaps.get(e);if(t)return t;const{assemblyManager:n}=o.getSession(this.clientStore);if(!n.get(e))throw new Error(`Could not find assembly with name "${e}"`);const r=this.clientStore.getInternetAccount(e),{baseURL:i}=r,a=new URL("refSeqs",i),s=new URLSearchParams({assembly:e});a.search=s.toString();const c=a.toString(),l=await this.fetch(r,c);if(!l.ok){let e;try{e=await l.text()}catch{e=""}throw new Error(`getRefNameAliases failed: ${l.status} (${l.statusText})${e?` (${e})`:""}`)}const u=await l.json(),d=new Map(u.map((e=>[e.name,{refName:e.name,id:e._id,aliases:e.aliases}])));return this.refSeqMaps.set(e,d),d}async getRefNameAliases(e){return[...(await this.getRefSeqMapping(e)).values()].map((e=>({refName:e.refName,aliases:[...new Set([e.id,...e.aliases])],uniqueId:`alias-${e.id}`})))}async getRefSeqId(e,t){const n=await this.getRefSeqMapping(e);if(!n)return;const r=n.get(t);return r?.id}async getRegions(e){const{assemblyManager:t}=o.getSession(this.clientStore);if(!t.get(e))throw new Error(`Could not find assembly with name "${e}"`);const n=this.clientStore.getInternetAccount(e),{baseURL:r}=n,i=new URL("refSeqs",r),a=new URLSearchParams({assembly:e});i.search=a.toString();const s=i.toString(),c=await this.fetch(n,s);if(!c.ok){let e;try{e=await c.text()}catch{e=""}throw new Error(`getRegions failed: ${c.status} (${c.statusText})${e?` (${e})`:""}`)}return(await c.json()).map((e=>({refName:e.name,start:0,end:e.length})))}getAssemblies(e){const{assemblyManager:t}=o.getSession(this.clientStore);return t.assemblies.filter((t=>{const r=n.getConf(t,["sequence","metadata"]);return!(!(r&&r.apollo&&r.internetAccountConfigId)||e&&r.internetAccountConfigId!==e)}))}async submitChange(e,t={}){const{internetAccountId:n}=t,r=this.clientStore.getInternetAccount("assembly"in e?e.assembly:void 0,n),{baseURL:o}=r,i=new URL("changes",o).href,a=await this.fetch(r,i,{method:"POST",body:JSON.stringify(e.toJSON()),headers:{"Content-Type":"application/json"}});if(!a.ok){const e=await ll(a,"submitChange failed");throw new Error(e)}const s=new ao;return a.ok||(s.ok=!1),s}}class Ru extends ku{async getFeatures(){return[[],[]]}async getSequence(e){const{assemblyName:t,end:n,refName:r,start:o}=e,i=this.clientStore.assemblies.get(t);if(!i)return{seq:"",refSeq:r};const a=i.refSeqs.get(r);return a?{seq:a.getSequence(o,n),refSeq:r}:{seq:"",refSeq:r}}async getRefNameAliases(e){const t=this.clientStore.assemblies.get(e),n=[];if(!t)return n;for(const[,e]of t.refSeqs)n.push({refName:e.name,aliases:[e._id],uniqueId:`alias-${e._id}`});return n}async getRegions(e){const t=this.clientStore.assemblies.get(e);if(!t)return[];const n=[];for(const[,r]of t.refSeqs)n.push({assemblyName:e,refName:r.name,start:r.sequence[0].start,end:r.sequence[0].stop});return n}getAssemblies(){const{assemblyManager:e}=o.getSession(this.clientStore);return e.assemblies.filter((e=>{const t=n.getConf(e,["sequence","metadata"]);return Boolean(t&&t.apollo&&!t.file&&!t.internetAccountConfigId)}))}async submitChange(e,t={}){const{clientStore:n}=this,{assemblies:r}=n;n.clearCheckResults();for(const[,e]of r)if("InMemoryFileDriver"===e.backendDriverType){const t=await Oc(e);n.addCheckResults(t)}return new ao}async searchFeatures(e,t){return[]}}class Du extends ku{async loadAssembly(e){const{assemblyManager:t}=o.getSession(this.clientStore),r=t.get(e);if(!r)throw new Error(`Assembly ${e} not found`);const{file:i}=n.getConf(r,["sequence","metadata"]),a=require("node:fs");return Mc(e,await a.promises.readFile(i,"utf8"),this.clientStore)}async getAssembly(e){let t=this.clientStore.assemblies.get(e);return t||(t=await this.loadAssembly(e)),t}async getRefNameAliases(e){const t=await this.getAssembly(e),n=[];for(const[,e]of t.refSeqs)n.push({refName:e.name,aliases:[e._id],uniqueId:`alias-${e._id}`});return n}async getFeatures(e){return await this.getAssembly(e.assemblyName),[[],[]]}async getSequence(e){const{assemblyName:t,end:n,refName:r,start:o}=e,i=(await this.getAssembly(t)).refSeqs.get(r);if(!i)throw new Error(`refSeq ${r} not found in client data store`);return{seq:i.getSequence(o,n),refSeq:r}}async getRegions(e){const t=await this.getAssembly(e),n=[];for(const[,r]of t.refSeqs)n.push({assemblyName:e,refName:r.name,start:r.sequence[0].start,end:r.sequence[0].stop});return n}getAssemblies(){const{assemblyManager:e}=o.getSession(this.clientStore);return e.assemblies.filter((e=>{const t=n.getConf(e,["sequence","metadata"]);return Boolean(t&&t.apollo&&!t.internetAccountConfigId&&t.file)}))}async submitChange(e){if(!ie(e))throw new Error(`Cannot use this type of change with local file: "${e.typeName}"`);const{assemblyManager:t}=o.getSession(this.clientStore),r=t.get(e.assembly);if(!r)throw new Error(`Could not find assembly with name "${e.assembly}"`);const{file:i}=n.getConf(r,["sequence","metadata"]),a=this.clientStore.assemblies.get(e.assembly);if(!a)throw new Error(`Could not find assembly in client with name "${e.assembly}"`);const s=new Set(...a.refSeqs.keys()),{checkResults:l}=this.clientStore;for(const e of l.values())s.has(e.refSeq)&&l.delete(e._id);const u=await Oc(a);this.clientStore.addCheckResults(u);const d=[{directive:"gff-version",value:"3"}];for(const[,e]of a.refSeqs)d.push({directive:"sequence-region",value:`${e.name} 1 ${e.sequence[0].stop}`});for(const e of a.comments)d.push({comment:e});for(const[,e]of a.refSeqs){const{features:t}=e;for(const[,e]of t)d.push(yt(c.getSnapshot(e)))}for(const[,e]of a.refSeqs){const[t]=e.sequence,n=Hr(t.sequence,80).join("\n");d.push({id:e.name,description:e.description,sequence:n})}const A=jc.formatSync(d),f=require("node:fs");return await f.promises.writeFile(i,A,"utf8"),new ao}async searchFeatures(e,t){return[]}}var Fu;function Tu(e,t,n,r){const o={_id:(new ut).toHexString(),refSeq:e,type:"CDS",min:n,max:r,strand:t},i={_id:(new ut).toHexString(),refSeq:e,type:"exon",min:n,max:r,strand:t},a={};return a[o._id]=o,a[i._id]=i,{_id:(new ut).toHexString(),refSeq:e,type:"mRNA",min:n,max:r,strand:t,children:a}}function ju({changeManager:e,handleClose:t,region:n,session:r}){const[o,a]=u.useState(String(n.end)),[c,l]=u.useState(String(n.start+1)),[d,A]=u.useState(Fu.GENE_AND_SUBFEATURES),[f,h]=u.useState(""),[g,p]=u.useState(),[m,y]=u.useState(""),_=Number(o)<=Number(c);let v=Boolean(_)||!(c&&o&&d);return(d===Fu.CUSTOM&&!f||!g&&d===Fu.GENE_AND_SUBFEATURES||!g&&d===Fu.TRANSCRIPT_AND_SUBFEATURES)&&(v=!0),i.jsxs(Al,{open:!0,title:"Add new feature",handleClose:t,maxWidth:!1,"data-testid":"add-feature-dialog",children:[i.jsxs("form",{onSubmit:async function(i){i.preventDefault(),y("");const a=r.apolloDataStore.getBackendDriver(n.assemblyName);if(!a)return void y("No backend driver found");let s=n.refName;if(a instanceof Nu){const e=await a.getRefSeqId(n.assemblyName,n.refName);if(!e)return void y(`Could not find refSeq for "${n.refName}"`);s=e}if(d===Fu.GENE_AND_SUBFEATURES){const i=Tu(s,g,Number(c)-1,Number(o)),a={};a[i._id]=i;const l=(new ut).toHexString(),u=new Nr({changedIds:[l],typeName:"AddFeatureChange",assembly:n.assemblyName,addedFeature:{_id:l,refSeq:s,min:Number(c)-1,max:Number(o),type:"gene",strand:g,children:a}});return e.submit(u).then((()=>{r.apolloSetSelectedFeature(l)})),void t()}if(d===Fu.TRANSCRIPT_AND_SUBFEATURES){const i=Tu(s,g,Number(c)-1,Number(o)),a=new Nr({changedIds:[i._id],typeName:"AddFeatureChange",assembly:n.assemblyName,addedFeature:i});return e.submit(a).then((()=>{r.apolloSetSelectedFeature(i._id)})),void t()}if(!f)return void y("No type selected");const l=(new ut).toHexString(),u=new Nr({changedIds:[l],typeName:"AddFeatureChange",assembly:n.assemblyName,addedFeature:{_id:l,refSeq:s,min:Number(c)-1,max:Number(o),type:f,strand:g}});e.submit(u).then((()=>{r.apolloSetSelectedFeature(l)})),t()},"data-testid":"submit-form",children:[i.jsxs(s.DialogContent,{style:{display:"flex",flexDirection:"column"},children:[i.jsx(s.TextField,{margin:"dense",id:"start",label:"Start",type:"number",fullWidth:!0,variant:"outlined",value:Number(c),onChange:e=>{l(e.target.value)}}),i.jsx(s.TextField,{margin:"dense",id:"end",label:"End",type:"number",fullWidth:!0,variant:"outlined",value:o,onChange:e=>{a(e.target.value)},error:_,helperText:_?'"End" must be greater than "Start"':null}),i.jsxs(s.FormControl,{children:[i.jsx(s.InputLabel,{id:"demo-simple-select-label",children:"Strand"}),i.jsxs(s.Select,{labelId:"demo-simple-select-label",id:"demo-simple-select",label:"Strand",value:g?.toString(),onChange:function(e){switch(y(""),Number(e.target.value)){case 1:p(1);break;case-1:p(-1);break;default:p(void 0)}},children:[i.jsx(s.MenuItem,{value:void 0}),i.jsx(s.MenuItem,{value:1,children:"+"}),i.jsx(s.MenuItem,{value:-1,children:"-"})]})]}),i.jsx(s.FormControl,{style:{marginTop:20},children:i.jsxs(s.RadioGroup,{"aria-labelledby":"demo-radio-buttons-group-label",defaultValue:Fu.GENE_AND_SUBFEATURES,name:"radio-buttons-group",value:d,onChange:e=>{y("");const{value:t}=e.target;Object.keys(Fu).includes(t)&&A(Fu[t])},children:[i.jsx(s.FormControlLabel,{value:Fu.GENE_AND_SUBFEATURES,control:i.jsx(s.Radio,{}),label:i.jsxs(s.Box,{display:"flex",alignItems:"center",children:["Add gene and sub-features",i.jsx(s.Tooltip,{title:"This is a shortcut to create a gene with a single mRNA, exon, and CDS",children:i.jsx(s.IconButton,{size:"small",children:i.jsx(xc,{sx:{fontSize:18}})})})]})}),i.jsx(s.FormControlLabel,{value:Fu.TRANSCRIPT_AND_SUBFEATURES,control:i.jsx(s.Radio,{}),label:i.jsxs(s.Box,{display:"flex",alignItems:"center",children:["Add transcript and sub-features",i.jsx(s.Tooltip,{title:"This is a shortcut to create a single mRNA with exon and CDS, but without a parent gene",children:i.jsx(s.IconButton,{size:"small",children:i.jsx(xc,{sx:{fontSize:18}})})})]})}),i.jsx(s.FormControlLabel,{value:Fu.CUSTOM,checked:d!==Fu.GENE_AND_SUBFEATURES&&d!==Fu.TRANSCRIPT_AND_SUBFEATURES,control:i.jsx(s.Radio,{}),label:"Add feature with a sequence ontology type"})]})}),d===Fu.CUSTOM?i.jsx(Su,{session:r,ontologyName:"Sequence Ontology",style:{width:170},value:f,filterTerms:wu,renderInput:e=>i.jsx(s.TextField,{...e,label:"Type",variant:"outlined",fullWidth:!0}),onChange:(e,t)=>{var n;t&&(n=t,y(""),h(n))}}):null]}),i.jsxs(s.DialogActions,{children:[i.jsx(s.Button,{variant:"contained",type:"submit",disabled:v,children:"Submit"}),i.jsx(s.Button,{variant:"outlined",type:"submit",onClick:t,children:"Cancel"})]})]}),m?i.jsx(s.DialogContent,{children:i.jsx(s.DialogContentText,{color:"error",children:m})}):null]})}function Mu(e,t){const n=(new ut).toHexString();t.push(n);const r={};if(e.children)for(const n of Object.values(e.children)){const e=Mu(n,t);r[e._id]=e}const o="string"==typeof e.refSeq?e.refSeq:e.refSeq.toHexString();return{...e,refSeq:o,children:e.children&&r,_id:n}}function Ou({changeManager:e,handleClose:t,session:r,sourceAssemblyId:o,sourceFeature:a}){const{assemblyManager:l}=r,d=l.assemblyList,[A,f]=u.useState(d.find((e=>e.name!==o))?.name),[h,g]=u.useState([]),[p,m]=u.useState(""),[y,_]=u.useState(a.min),[v,b]=u.useState("");function C(e,t){const n={};if(e.children)for(const r of Object.values(e.children)){const e=C(r,t);e.refSeq=p,e.min=e.min+t,e.max=e.max+t,n[e._id]=e}const r="string"==typeof e.refSeq?e.refSeq:e.refSeq.toHexString(),o="string"==typeof e._id?e._id:e._id.toHexString();return{...e,refSeq:r,children:e.children&&n,_id:o}}return u.useEffect((()=>{(async function(){if(m(""),!A)return void b("No assemblies to copy to");const e=await l.waitForAssembly(A);if(!e)return;const{refNameAliases:t}=e;if(!t)return;const n=[...Object.entries(t)].filter((([e,t])=>e!==t)).map((([e,t])=>({_id:e,name:t})));g(n),m(n[0]?._id||"")})().catch((e=>{b(String(e))}))}),[A,l]),i.jsxs(Al,{open:!0,title:"Copy features and annotations",handleClose:t,maxWidth:!1,"data-testid":"copy-feature",children:[i.jsxs("form",{onSubmit:async function(n){if(!A)return;n.preventDefault(),b("");const o=a.length,i=await l.waitForAssembly(A);if(!i)return void b(`Assembly not found: ${A}.`);const s=i.getCanonicalRefName(p),u=i.regions?.find((e=>e.refName===s));if(!u)return void b(`RefSeq not found: ${p}.`);const d=y+o;if(d>u.end)return void b(`Feature would extend beyond the bounds of the selected reference sequence. (Feature would end at ${d}, but reference sequence ends at ${u.end})`);if(y<u.start)return void b(`Reference sequence starts at ${u.start}, feature cannot start before that.`);const f=[],h=Mu(c.getSnapshot(a),f),g={...h.attributes};"Parent"in g&&delete g.Parent,h.refSeq=p;const m=y-h.min;h.min=y,h.max=y+o;const _=C(h,m),v=new Nr({changedIds:[h._id],typeName:"AddFeatureChange",assembly:A,addedFeature:{_id:h._id,refSeq:h.refSeq,min:h.min,max:h.max,type:h.type,children:_.children,attributes:g,strand:h.strand},copyFeature:!0,allIds:f});e.submit(v).then((()=>{r.apolloSetSelectedFeature(h._id)})),t(),n.preventDefault()},children:[i.jsxs(s.DialogContent,{style:{display:"flex",flexDirection:"column"},children:[i.jsx(s.DialogContentText,{children:"Target assembly"}),i.jsx(s.Select,{labelId:"label",value:A,onChange:function(e){f(e.target.value)},children:d.filter((e=>e.name!==o)).map((e=>i.jsx(s.MenuItem,{value:e.name,children:n.readConfObject(e,"displayName")},e.name)))}),i.jsx(s.DialogContentText,{children:"Target reference sequence"}),i.jsx(s.Select,{labelId:"label",value:p,onChange:function(e){m(e.target.value)},children:h.map((e=>i.jsx(s.MenuItem,{value:e._id,children:e.name},e._id)))}),i.jsx(s.DialogContentText,{children:"Start position in target reference sequence"}),i.jsx(s.TextField,{margin:"dense",type:"number",fullWidth:!0,variant:"outlined",value:y,onChange:e=>{_(Number(e.target.value))}})]}),i.jsxs(s.DialogActions,{children:[i.jsx(s.Button,{disabled:!A||!p||!y,variant:"contained",type:"submit",children:"Submit"}),i.jsx(s.Button,{variant:"outlined",type:"submit",onClick:t,children:"Cancel"})]})]}),v?i.jsx(s.DialogContent,{children:i.jsx(s.DialogContentText,{color:"error",children:v})}):null]})}function Lu({changeManager:e,handleClose:t,session:n}){const{internetAccounts:r}=c.getRoot(n),[o,a]=u.useState(""),[l,d]=u.useState(!1),[A,f]=u.useState(!1),h=r.filter((e=>"ApolloInternetAccount"===e.type));if(0===h.length)throw new Error("No Apollo internet account found");const[g,p]=u.useState(h[0]),{collaborationServerDriver:m}=n.apolloDataStore,y=m.getAssemblies(),[_,v]=u.useState(y.at(0));return i.jsxs(Al,{open:!0,title:"Delete Assembly",handleClose:t,maxWidth:!1,"data-testid":"delete-assembly",children:[i.jsxs("form",{onSubmit:async function(n){if(n.preventDefault(),f(!0),a(""),!_)return void a("Must select assembly!");const r=new Fr({typeName:"DeleteAssemblyChange",assembly:_.name});await e.submit(r,{internetAccountId:g.internetAccountId}),t(),n.preventDefault()},children:[i.jsxs(s.DialogContent,{style:{display:"flex",flexDirection:"column"},children:[h.length>1?i.jsxs(i.Fragment,{children:[i.jsx(s.DialogContentText,{children:"Select 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deleted"})})]}),i.jsxs(s.DialogActions,{children:[i.jsx(s.Button,{disabled:!_||!l,variant:"contained",type:"submit",children:"Delete"}),i.jsx(s.Button,{variant:"outlined",type:"submit",onClick:t,children:"Cancel"})]})]}),o?i.jsx(s.DialogContent,{children:i.jsx(s.DialogContentText,{color:"error",children:o})}):null]})}function Pu({changeManager:e,handleClose:t,selectedFeature:n,session:r,setSelectedFeature:o,sourceAssemblyId:a,sourceFeature:l}){const[d,A]=u.useState(""),{ontologyManager:f}=r.apolloDataStore,{featureTypeOntology:h}=f;function g(e){if(!e.parent?.children||1===e.parent.children.size)return;const t=[];for(const n of e.parent.children.values())h?.isTypeOf(n.type,"CDS")||t.push(n);t.sort(((e,t)=>e.min-t.min));const n=[];for(const t of e.parent.children.values())h?.isTypeOf(t.type,"CDS")||n.push(t);if(n.sort(((e,t)=>t.max-e.max)),e.min===t[0].min){let n;for(const r of t)if(r._id!==e._id&&r.min>=e.min){n=r.min;break}if(n&&n!=e.parent.min)return{typeName:"LocationStartChange",changedId:e.parent._id,featureId:e.parent._id,oldLocation:e.parent.min,newLocation:n}}if(e.max===n[0].max){let t;for(const r of n)if(r._id!=e._id&&r.max<=e.max){t=r.max;break}if(t&&t!=e.parent.max)return{typeName:"LocationEndChange",changedId:e.parent._id,featureId:e.parent._id,oldLocation:e.parent.max,newLocation:t}}}return i.jsxs(Al,{open:!0,title:"Delete feature",handleClose:t,maxWidth:!1,"data-testid":"delete-feature",children:[i.jsxs("form",{onSubmit:r=>{!async function(r){r.preventDefault(),A(""),n?._id===l._id&&o();const i=[],s=new kr({changedIds:[l._id],typeName:"DeleteFeatureChange",assembly:a,changes:[{deletedFeature:c.getSnapshot(l),parentFeatureId:l.parent?._id}]});if(h&&(h.isTypeOf(l.type,"transcript")||h.isTypeOf(l.type,"pseudogenic_transcript"))){const e=g(l);e&&i.push(e)}if(h&&h.isTypeOf(l.type,"exon")){const e=function(e){if(!h)return;if(!h.isTypeOf(e.type,"exon"))return;if(!e.parent?.cdsLocations||0===e.parent.cdsLocations.length||0===e.parent.cdsLocations[0].length)return;if(!e.parent.children)throw new Error("Unable to find parent of CDS");if(1!=e.parent.cdsLocations.length)throw new Error("Unable to handle a transcript with multiple CDSs");const t=(e.parent.cdsLocations.at(0)??[]).sort((({min:e},{min:t})=>e-t));let n;for(const r of e.parent.children.values())if(r.type===t[0].type){n=r;break}if(!n)throw new Error("Unable to find CDS");const r=t[0].min,o=t[t.length-1].max;if(!(e.min>r&&e.max<o||e.max<r||e.min>o)){if(e.min<=r&&e.max>=o)return new kr({changedIds:[n._id],typeName:"DeleteFeatureChange",assembly:a,changes:[{deletedFeature:c.getSnapshot(n),parentFeatureId:n.parent?._id}]});if(e.min<=r&&e.max>r){let r;for(const n of t)if(n.min>e.max){r=n.min;break}if(!r)throw new Error("Error setting new CDS 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e.children)r._id!=t.featureId&&r.max>n&&(n=r.max);n!=e.max&&i.push({typeName:t.typeName,changedId:e._id,featureId:e._id,oldLocation:e.max,newLocation:n})}}}const u=function(e,t){if(0===e.length)return;const n=new Ur({typeName:"LocationStartChange",changedIds:[],changes:[],assembly:t}),r=new qr({typeName:"LocationEndChange",changedIds:[],changes:[],assembly:t});for(const t of e)"LocationStartChange"===t.typeName&&(n.changedIds.push(t.changedId),n.changes.push({featureId:t.featureId,oldStart:t.oldLocation,newStart:t.newLocation})),"LocationEndChange"===t.typeName&&(r.changedIds.push(t.changedId),r.changes.push({featureId:t.featureId,oldEnd:t.oldLocation,newEnd:t.newLocation}));if(n.changedIds.length>0&&0===r.changedIds.length)return n;if(r.changedIds.length>0&&0===n.changedIds.length)return r;throw new Error("Unexpected list of changes")}(i,a);await e.submit(s),u&&await 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200<=t.status&&299>=t.status}function r(e){try{e.dispatchEvent(new MouseEvent("click"))}catch(n){var t=document.createEvent("MouseEvents");t.initMouseEvent("click",!0,!0,window,0,0,0,80,20,!1,!1,!1,!1,0,null),e.dispatchEvent(t)}}var o="object"==("undefined"==typeof window?"undefined":X(window))&&window.window===window?window:"object"==("undefined"==typeof self?"undefined":X(self))&&self.self===self?self:"object"==X(se)&&se.global===se?se:void 0,i=o.navigator&&/Macintosh/.test(navigator.userAgent)&&/AppleWebKit/.test(navigator.userAgent)&&!/Safari/.test(navigator.userAgent),a=o.saveAs||("object"!=("undefined"==typeof window?"undefined":X(window))||window!==o?function(){}:"download"in HTMLAnchorElement.prototype&&!i?function(e,i,a){var s=o.URL||o.webkitURL,c=document.createElement("a");c.download=i=i||e.name||"download",c.rel="noopener","string"==typeof 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s="application/octet-stream"===e.type,c=/constructor/i.test(o.HTMLElement)||o.safari,l=/CriOS\/[\d]+/.test(navigator.userAgent);if((l||s&&c||i)&&"undefined"!=typeof FileReader){var u=new FileReader;u.onloadend=function(){var e=u.result;e=l?e:e.replace(/^data:[^;]*;/,"data:attachment/file;"),a?a.location.href=e:location=e,a=null},u.readAsDataURL(e)}else{var d=o.URL||o.webkitURL,A=d.createObjectURL(e);a?a.location=A:location.href=A,a=null,setTimeout((function(){d.revokeObjectURL(A)}),4e4)}});o.saveAs=a.saveAs=a,e.exports=a}()}(Ju)),Ju.exports);function Gu({handleClose:e,session:t}){const[r,o]=u.useState(!1),[a,l]=u.useState(),[d,A]=u.useState(""),{collaborationServerDriver:f,getInternetAccount:h,inMemoryFileDriver:g}=t.apolloDataStore,p=[...f.getAssemblies(),...g.getAssemblies()];return i.jsxs(Al,{open:!0,title:"Export GFF3",handleClose:e,maxWidth:!1,"data-testid":"download-gff3",children:[i.jsxs("form",{onSubmit:async function(o){if(o.preventDefault(),A(""),!a)return void A("Must select 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s){const{end:t,refName:n,start:r}=e;i.push({directive:"sequence-region",value:`${n} ${r+1} ${t}`})}for(const[,e]of o){const{features:t}=e;if(t)for(const[,e]of t)i.push(yt(c.getSnapshot(e)))}for(const e of s){const{refName:t,seq:n}=e;i.push({id:t,description:"",sequence:n})}const l=jc.formatSync(i),u=new Blob([l],{type:"text/plain;charset=utf-8"});Uu.saveAs(u,`${a.displayName??a.name}.gff3`)}(t),e()},children:[i.jsxs(s.DialogContent,{style:{display:"flex",flexDirection:"column"},children:[i.jsx(s.DialogContentText,{children:"Select assembly"}),i.jsx(s.Select,{labelId:"label",value:a?.name??"",onChange:function(e){const t=p.find((t=>t.name===e.target.value));l(t)},disabled:0===p.length,children:p.map((e=>i.jsx(s.MenuItem,{value:e.name,children:e.displayName??e.name},e.name)))}),i.jsx(s.DialogContentText,{children:"Select assembly to export to 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out",handleClose:e,maxWidth:!1,"data-testid":"log-out",children:[i.jsxs("form",{onSubmit:function(e){e.preventDefault(),o(""),l.removeToken(),globalThis.location.reload()},children:[i.jsxs(s.DialogContent,{style:{display:"flex",flexDirection:"column"},children:[a.length>1?i.jsxs(i.Fragment,{children:[i.jsx(s.DialogContentText,{children:"Select account"}),i.jsx(s.Select,{value:l.internetAccountId,onChange:function(e){const t=a.find((t=>t.internetAccountId===e.target.value));if(!t)throw new Error(`Could not find internetAccount with ID "${e.target.value}"`);d(t)},children:n.map((e=>i.jsx(s.MenuItem,{value:e.internetAccountId,children:e.name},e.id)))})]}):null,i.jsx(s.DialogContentText,{children:"Are you sure you want to log out?"})]}),i.jsxs(s.DialogActions,{children:[i.jsx(s.Button,{disabled:!l,variant:"contained",type:"submit",children:"Log 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md(e){const{classes:t}=hd();return i.jsx(s.Button,{className:t.loginButton,variant:"outlined",startIcon:i.jsx(dd,{fontSize:"small"}),...e,children:"Continue as Guest"})}const yd=Ec()((e=>({divider:{marginTop:e.spacing(4),marginBottom:e.spacing(5)}}))),_d=({baseURL:e,handleClose:t,name:n})=>{const{classes:r}=yd(),[o,a]=u.useState(""),[c,l]=u.useState([]);function d(e){t("google"===e?"google":"microsoft"===e?"microsoft":"guest")}u.useEffect((()=>{const t=new AbortController,{signal:n}=t;return async function(){const t=new URL("auth/types",e).href,r=await fetch(t,{method:"GET",signal:n});if(!r.ok){const e=await ll(r,"Error when retrieving auth types from server");return void a(e)}const o=await r.json();l(o)}().catch((e=>{Hl(e)||a(String(e))})),()=>{t.abort(new DOMException("Error retrieving valid authentication types","AbortError"))}}),[e]);const A=c.includes("google"),f=c.includes("microsoft"),h=c.includes("guest");return i.jsxs(Al,{open:!0,title:`Log in to ${n}`,handleClose:t,maxWidth:!1,"data-testid":"login-apollo",children:[i.jsxs(s.DialogContent,{style:{display:"flex",flexDirection:"column",paddingTop:8},children:[A?i.jsx(gd,{disabled:!A,onClick:()=>{d("google")}}):null,f?i.jsx(pd,{disabled:!f,onClick:()=>{d("microsoft")}}):null,h?i.jsxs(i.Fragment,{children:[i.jsx(s.Divider,{className:r.divider}),i.jsx(md,{onClick:()=>{d("guest")}})]}):null]}),i.jsx(s.DialogActions,{children:i.jsx(s.Button,{variant:"outlined",type:"submit",onClick:()=>{t()},children:"Cancel"})}),o?i.jsx(s.DialogContent,{children:i.jsx(s.DialogContentText,{color:"error",children:o})}):null]})},vd="undefined"==typeof sessionStorage,bd=e=>r.InternetAccount.named("ApolloInternetAccount").props({type:c.types.literal("ApolloInternetAccount"),configuration:n.ConfigurationReference(e)}).views((e=>({get baseURL(){return n.getConf(e,"baseURL")},getUserId(){const t=e.retrieveToken();if(t)return bo(t).id}}))).volatile((()=>({role:void 0,controller:new AbortController}))).actions((e=>({setRole(){const t=e.retrieveToken();if(!t)return void(e.role=void 0);const n=bo(t),{role:r}=n;e.role!==r&&(e.role=r)}}))).actions((e=>{let t;return{addMessageChannel(e,n){t=t=>{this.finishOAuthWindow(t,e,n)},window.addEventListener("message",t)},deleteMessageChannel(){window.removeEventListener("message",t)},finishOAuthWindow(t,n,r){if(t.data.name!==`JBrowseAuthWindow-${e.internetAccountId}`)return;const o=t.data.redirectUri.replace("#","?"),i=new URL(o),a=new URLSearchParams(i.search).get("access_token");this.deleteMessageChannel(),a?(e.storeToken(a),e.setRole(),n(a)):r(new Error("Error with token endpoint"))},async openAuthWindow(t,n,r){const i=o.isElectron?"http://localhost/auth":globalThis.location.origin+globalThis.location.pathname,a=new URL("auth/login",e.baseURL),s=new URLSearchParams({type:t,redirect_uri:i});a.search=s.toString();const c=`JBrowseAuthWindow-${e.internetAccountId}`;if(o.isElectron){const{ipcRenderer:t}=globalThis.require("electron"),o=await t.invoke("openAuthWindow",{internetAccountId:e.internetAccountId,data:{redirect_uri:i},url:a.toString()}),s=new MessageEvent("message",{data:{name:c,redirectUri:o}});this.finishOAuthWindow(s,n,r)}else this.addMessageChannel(n,r),window.open(a,c,"width=500,height=600")}}})).actions((e=>({async getTokenFromUser(t,n){const{baseURL:r}=e,o=await new Promise(((t,n)=>{const{session:r}=c.getRoot(e),{baseURL:o,name:i}=e;r.queueDialog((e=>[_d,{name:i,handleClose:r=>{r?r instanceof Error?n(r):t(r):n(new Error("user cancelled entry")),e()},baseURL:o}]))}));if("guest"!==o)return void e.openAuthWindow(o,t,n);const i=new URL("auth/login",r),a=new URLSearchParams({type:o});i.search=a.toString();const s=i.toString(),l=await fetch(s,{signal:e.controller.signal});if(!l.ok){const e=await ll(l,"Error when logging in");return void n(new Error(e))}const{token:u}=await l.json();t(u)}}))).volatile((()=>({lastChangeSequenceNumber:void 0}))).actions((e=>({setLastChangeSequenceNumber(t){e.lastChangeSequenceNumber=t}}))).actions((e=>({updateLastChangeSequenceNumber:c.flow((function*(){const{baseURL:t}=e,n=new URL("changes",t),r=new URLSearchParams({limit:"1"});n.search=r.toString();const o=n.toString(),i=e.getFetcher({locationType:"UriLocation",uri:o});let a;try{a=yield i(o,{method:"GET",signal:e.controller.signal})}catch(t){return void(e.controller.signal.aborted||console.error(t))}if(!a.ok){const e=yield ll(a,"Error when fetching server LastChangeSequence");throw new Error(e)}const s=yield a.json();e.setLastChangeSequenceNumber(s.length>0?s[0].sequence:0)})),getMissingChanges:c.flow((function*(){const{session:t}=c.getRoot(e),{changeManager:n}=t.apolloDataStore;if(!e.lastChangeSequenceNumber)throw new Error("No LastChangeSequence stored in session. Please, refresh you browser to get last updates from server");const{baseURL:r,lastChangeSequenceNumber:o}=e,i=new URL("changes",r),a=new URLSearchParams({since:String(o),sort:"1"});i.search=a.toString();const s=i.toString(),l=e.getFetcher({locationType:"UriLocation",uri:s});let u;try{u=yield l(s,{method:"GET",signal:e.controller.signal})}catch(t){return void(e.controller.signal.aborted||console.error(t))}if(!u.ok)return void console.error(`Error when fetching the last updates to recover socket connection — ${u.status}`);const d=yield u.json();for(const e of d){const t=oe.fromJSON(e);n.submit(t,{submitToBackend:!1})}}))}))).volatile((e=>{const{origin:t,pathname:n}=new URL("socket.io/",e.baseURL);return{socket:fa(t,{path:n})}})).actions((e=>({addSocketListeners(){const{session:t}=c.getRoot(e),{notify:n}=t,r=e.retrieveToken();if(!r)throw new Error("No Token found");const o=vo(bo(r)),{socket:i}=e,{addCheckResult:a,changeManager:s,deleteCheckResult:l}=t.apolloDataStore;i.on("connect",(()=>{e.getMissingChanges()})),i.on("connect_error",(e=>{console.error(e),n("Could not connect to the Apollo server.","error")})),i.on("COMMON",(e=>{if("checkResult"in e)return void(e.deleted?l(e.checkResult._id.toString()):a(e.checkResult));if(sessionStorage.setItem("LastChangeSequence",String(e.changeSequence)),e.userSessionId===o)return;const t=oe.fromJSON(e.changeInfo);s.submit(t,{submitToBackend:!1})})),i.on("USER_LOCATION",(e=>{const{channel:n,locations:r,userName:i,userSessionId:a}=e;"USER_LOCATION"===n&&a!==o&&t.addOrUpdateCollaborator({name:i,id:a,locations:r})})),i.on("REQUEST_INFORMATION",(e=>{const{channel:n,userSessionId:o}=e;"REQUEST_INFORMATION"===n&&o!==r&&t.broadcastLocations()}))}}))).actions((e=>({postUserLocation:(t=>{let n;return t=>{clearTimeout(n),n=setTimeout((()=>{!async function(t){if(!c.isAlive(e)||"none"===e.role)return;const{baseURL:n,controller:r}=e,o=new URL("users/userLocation",n).href,i=new URLSearchParams(JSON.stringify(t)),a=e.getFetcher({locationType:"UriLocation",uri:o});try{if(!(await a(o,{method:"POST",body:i,signal:r.signal})).ok)throw new Error("ignore")}catch{console.error("Broadcasting user location failed")}}(t)}),300)}})()}))).volatile((()=>({roleNotificationSent:!1}))).actions((e=>{function t(){e.postUserLocation([])}function n(){if("hidden"===document.visibilityState&&e.postUserLocation([]),"visible"===document.visibilityState){const{session:t}=c.getRoot(e);t.broadcastLocations()}}return{initialize:c.flow((function*(r){if("none"===r){if(!e.roleNotificationSent){const{session:t}=c.getRoot(e);t.notify("You have registered as an Apollo user but have not been given access. Ask your administrator to enable access for your account.","warning"),e.roleNotificationSent=!0}return}if("admin"===r){const t=c.getRoot(e);o.isAbstractMenuManager(t)&&function(e){e.appendToMenu("Apollo",{label:"Admin",type:"subMenu",icon:ha,subMenu:[{label:"Add Assembly",icon:Uo,onClick:e=>{e.queueDialog((t=>[pl,{session:e,handleClose:()=>{t()},changeManager:e.apolloDataStore.changeManager}]))}},{label:"Delete Assembly",icon:ga,onClick:e=>{e.queueDialog((t=>[Lu,{session:e,handleClose:()=>{t()},changeManager:e.apolloDataStore.changeManager}]))}},{label:"Import Features",icon:pa,onClick:e=>{e.queueDialog((t=>[Hu,{session:e,handleClose:()=>{t()},changeManager:e.apolloDataStore.changeManager}]))}},{label:"Add reference sequence aliases",onClick:e=>{e.queueDialog((t=>[id,{session:e,handleClose:()=>{t()},changeManager:e.apolloDataStore.changeManager}]))}},{label:"Add Assembly aliases",onClick:e=>{e.queueDialog((t=>[yl,{session:e,handleClose:()=>{t()},changeManager:e.apolloDataStore.changeManager}]))}},{label:"Manage Users",icon:ma,onClick:e=>{e.queueDialog((t=>[Ku,{session:e,handleClose:()=>{t()},changeManager:e.apolloDataStore.changeManager}]))}},{label:"Manage Checks",icon:ya,onClick:e=>{e.queueDialog((t=>[zu,{session:e,handleClose:()=>{t()}}]))}}]})}(t)}yield e.updateLastChangeSequenceNumber(),e.addSocketListeners();const{baseURL:i}=e,a=new URL("users/locations",i).href,s=e.getFetcher({locationType:"UriLocation",uri:a});yield s(a,{method:"GET",signal:e.controller.signal}),window.addEventListener("beforeunload",t),document.addEventListener("visibilitychange",n)})),removeBeforeUnloadListener(){window.removeEventListener("beforeunload",t)},removeVisibilityChangeListener(){document.removeEventListener("visibilitychange",n)}}})).actions((e=>({afterAttach(){e.setRole(),l.autorun((async t=>{if(vd)return;const{session:n}=c.getRoot(e);if(n&&e.role)try{await e.initialize(e.role),t.dispose()}catch{}}),{name:"ApolloInternetAccount"})},beforeDestroy(){e.removeBeforeUnloadListener(),e.removeVisibilityChangeListener(),e.controller.abort(new DOMException("Cleaning up Apollo connection","AbortError")),e.socket.close()}}))),Cd="undefined"==typeof sessionStorage;class Id extends y.BaseAdapter{refNameAliases;async getRefNameAliases(){const e=n.readConfObject(this.config,"assemblyId");if(!Cd){const t=this.pluginManager?.rootModel?.session?.apolloDataStore;if(!t)throw new Error("No Apollo data store found");const n=t.getBackendDriver(e);if(!n)throw new Error("No backend driver found");return await n.getRefNameAliases(e)}const t=await new Promise(((t,n)=>{const r=setTimeout((()=>{n(new Error("timeout"))}),2e4),o=Zu(),i=e=>{const n=e.data;(function(e){return"object"==typeof e&&null!==e&&"apollo"in e&&!0===e.apollo&&"refNameAliases"in e})(n)&&n.messageId===o&&(clearTimeout(r),removeEventListener("message",i),t(n.refNameAliases))};addEventListener("message",i),rpcServer.emit("apollo",{apollo:!0,method:"getRefNameAliases",assembly:e,messageId:o})}));return this.refNameAliases=t,t}freeResources(){}}var wd=n.ConfigurationSchema("ApolloRefNameAliasAdapter",{assemblyId:{type:"string",defaultValue:""}},{explicitlyTyped:!0});function Ed(e){return"uniqueId"in e&&"object"!==X(e.data)}var xd=function(){function e(t){var n=this;N(this,e),T(this,"data",void 0),T(this,"subfeatures",void 0),T(this,"parentHandle",void 0),T(this,"uniqueId",void 0),Ed(t)?this.data=t:(this.data=t.data,this.parentHandle=t.parent);var r,o=Ed(t)?t.uniqueId:t.id;if(null==o)throw new Error("SimpleFeature requires a unique `id` or `data.uniqueId` attribute");if(this.uniqueId=String(o),!(this.data.aliases||this.data.end-this.data.start>=0))throw new Error("invalid feature data, end less than start. end: ".concat(this.data.end," start: ").concat(this.data.start));this.data.subfeatures&&(this.subfeatures=null===(r=this.data.subfeatures)||void 0===r?void 0:r.map((function(t,r){return"function"!=typeof t.get?new e({id:t.uniqueId||"".concat(o,"-").concat(r),data:q({strand:n.data.strand},t),parent:n}):t})))}return D(e,[{key:"get",value:function(e){return"subfeatures"===e?this.subfeatures:"parent"===e?this.parent():this.data[e]}},{key:"set",value:function(e,t){this.data[e]=t}},{key:"tags",value:function(){return Object.keys(this.data)}},{key:"id",value:function(){return this.uniqueId}},{key:"parent",value:function(){return this.parentHandle}},{key:"children",value:function(){return this.get("subfeatures")}},{key:"toJSON",value:function(){var e=q(q({},this.data),{},{uniqueId:this.id()}),t=this.parent();t&&(e.parentId=t.id());var n=this.children();return n&&(e.subfeatures=n.map((function(e){return e.toJSON()}))),e}}],[{key:"fromJSON",value:function(t){return new e(q({},t))}}])}();function Sd(e){return"object"==typeof e&&null!==e&&"apollo"in e&&!0===e.apollo}const Bd="undefined"==typeof sessionStorage;class kd extends y.BaseSequenceAdapter{regions;async getRefNames(){return(await this.getRegions()).map((e=>e.refName))}async getRegions(){if(this.regions)return this.regions;const e=n.readConfObject(this.config,"assemblyId");if(!Bd){const t=this.pluginManager?.rootModel?.session?.apolloDataStore;if(!t)throw new Error("No Apollo data store found");const n=t.getBackendDriver(e);if(!n)throw new Error("No backend driver found");const r=await n.getRegions(e);return this.regions=r,r}const t=await new Promise(((t,n)=>{const r=setTimeout((()=>{n("timeout")}),2e4),o=Zu(),i=e=>{const{data:n}=e;Sd(n)&&n.messageId===o&&(clearTimeout(r),removeEventListener("message",i),t(n.regions))};addEventListener("message",i),globalThis.rpcServer.emit("apollo",{apollo:!0,method:"getRegions",assembly:e,messageId:o})}));return this.regions=t,t}getFeatures(e){const{end:t,refName:r,start:o}=e,i=n.readConfObject(this.config,"assemblyId"),a={...e,assemblyName:i};return _.ObservableCreate((async e=>{if(!Bd){const n=this.pluginManager?.rootModel?.session?.apolloDataStore;if(!n)return void e.error("No Apollo data store found");const s=n.getBackendDriver(i);if(!s)return void e.error("No backend driver found");const c=(await s.getRegions(a.assemblyName)).find((e=>e.refName===a.refName));if(!c)return void e.error("Cannot get region");a.end>c.end&&(a.end=c.end);const{seq:l}=await s.getSequence(a);return e.next(new xd({id:`${r} ${o}-${t}`,data:{refName:r,start:o,end:t,seq:l}})),void e.complete()}const n=await new Promise(((e,t)=>{const n=setTimeout((()=>{t("timeout")}),2e4),r=Zu(),o=t=>{const{data:i}=t;Sd(i)&&i.messageId===r&&(clearTimeout(n),removeEventListener("message",o),e(i.sequence))};addEventListener("message",o),globalThis.rpcServer.emit("apollo",{apollo:!0,method:"getSequence",region:a,messageId:r})}));e.next(new xd({id:`${r} ${o}-${t}`,data:{refName:r,start:o,end:t,seq:n}})),e.complete()}))}freeResources(){}}var Qd=n.ConfigurationSchema("ApolloSequenceAdapter",{assemblyId:{type:"string",defaultValue:""}},{explicitlyTyped:!0}),Nd=function(){return D((function e(t){N(this,e),T(this,"label",void 0),T(this,"renderingComponent",void 0),T(this,"displayString",void 0),T(this,"matchedAttribute",void 0),T(this,"matchedObject",void 0),T(this,"textSearchAdapter",void 0),T(this,"relevance",void 0),T(this,"trackId",void 0),T(this,"score",void 0),T(this,"locString",void 0),T(this,"results",void 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i.named("LinearApolloDisplayLayouts").props({cleanupBoundary:2e5}).volatile((()=>({seenFeatures:l.observable.map()}))).views((e=>({getAnnotationFeatureById:t=>e.seenFeatures.get(t),getGlyph(e){const{topLevelFeature:t}=e;return t.looksLikeGene?If:t.children?.size?jf:af}}))).actions((e=>({addSeenFeature(t){e.seenFeatures.set(t._id,t)},deleteSeenFeature(t){e.seenFeatures.delete(t)}}))).views((e=>({get featureLayouts(){const{assemblyManager:t}=e.session;return e.lgv.displayedRegions.map((n=>{const r=t.get(n.assemblyName),i=new Map,a=new Map,{end:s,refName:l,start:u}=n;for(const[t,n]of e.seenFeatures.entries()){if(!c.isAlive(n)){e.deleteSeenFeature(t);continue}if(l!==r?.getCanonicalRefName(n.refSeq)||!o.doesIntersect2(u,s,n.min,n.max)||e.filteredFeatureTypes.length>0&&!e.filteredFeatureTypes.includes(n.type))continue;const{featureTypeOntology:d}=e.session.apolloDataStore.ontologyManager;if(!d)throw new Error("featureTypeOntology is undefined");const A=e.getGlyph(n).getRowCount(n,d,e.lgv.bpPerPx);let f=0,h=!1;for(;!h;){let e=Uf(f,A,a);if(e.length<A){for(let t=0;t<A-e.length;t++){const e=a.size;a.set(e,[]),i.set(e,[])}e=Uf(f,A,a)}if(Gf(e,n)){for(let e=f;e<f+A;e++){a.get(e)?.push([n.min,n.max]);const t=i.get(e);t?.push([e-f,n._id])}h=!0}else f+=1}}return i}))},getFeatureLayoutPosition(t){const{featureLayouts:n}=this,{featureTypeOntology:r}=e.session.apolloDataStore.ontologyManager;for(const[o,i]of n.entries())for(const[n,a]of i)for(const[i,s]of a){if(0!==i)continue;const a=e.getAnnotationFeatureById(s);if(a){if(t._id===a._id)return{layoutIndex:o,layoutRow:n,featureRow:i};if(a.hasDescendant(t._id)){if(!r)throw new Error("featureTypeOntology is undefined");const i=e.getGlyph(a).getRowForFeature(a,t,r);if(void 0!==i)return{layoutIndex:o,layoutRow:n,featureRow:i}}}}}}))).views((e=>({get highestRow(){return Math.max(0,...e.featureLayouts.map((e=>Math.max(...e.keys()))))}}))).actions((e=>({afterAttach(){c.addDisposer(e,l.autorun((()=>{if(e.lgv.initialized&&!e.regionCannotBeRendered()){for(const[t,n]of e.seenFeatures.entries()){let r=!1;for(const t of e.regions)if(o.doesIntersect2(t.start-e.cleanupBoundary,t.end+e.cleanupBoundary,n.min,n.max)){r=!0;break}r||e.deleteSeenFeature(t)}for(const t of e.regions){const n=e.session.apolloDataStore.assemblies.get(t.assemblyName),r=n?.getByRefName(t.refName),i=r?.features;if(i)for(const[,n]of 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featuresHeight(){return(e.highestRow+1)*e.apolloRowHeight+e.lastRowTooltipBufferHeight}}))).actions((e=>({toggleShown(){e.isShown=!e.isShown},setDetailsHeight(t){e.detailsHeight=e.isShown?Math.max(Math.min(t,e.height-100),Math.min(e.height,e.detailsMinHeight)):t},setCanvas(t){e.canvas=t},setOverlayCanvas(t){e.overlayCanvas=t},setCollaboratorCanvas(t){e.collaboratorCanvas=t},setTheme(t){e.theme=t}}))).actions((e=>({afterAttach(){c.addDisposer(e,l.autorun((()=>{if(!e.lgv.initialized||e.regionCannotBeRendered())return;const t=e.collaboratorCanvas?.getContext("2d");if(t){t.clearRect(0,0,e.lgv.dynamicBlocks.totalWidthPx,e.featuresHeight);for(const n of e.session.collaborators){const{locations:r}=n;if(0===r.length)continue;let o=0;for(const i of e.lgv.displayedRegions){for(const a of r){if(a.refSeq!==i.refName)continue;const{end:r,refSeq:s,start:c}=a,l=e.lgv.bpToPx({refName:s,coord:c,regionNumber:o});if(!l)continue;const u=l.offsetPx-e.lgv.offsetPx,d=(r-c)/e.lgv.bpPerPx;t.fillStyle="rgba(0,255,0,.2)",t.fillRect(u,1,d,100),t.fillStyle="black",t.fillText(n.name,u+1,11,d-2)}o++}}}}),{name:"LinearApolloDisplayRenderCollaborators"})),c.addDisposer(e,l.autorun((()=>{const{canvas:t,featureLayouts:n,featuresHeight:r,lgv:i}=e;if(!i.initialized||e.regionCannotBeRendered())return;const{displayedRegions:a,dynamicBlocks:s}=i,c=t?.getContext("2d");if(c){c.clearRect(0,0,s.totalWidthPx,r);for(const[t,r]of n.entries()){const n=a[t];for(const[i,a]of r.entries())for(const[r,s]of a){const a=e.getAnnotationFeatureById(s);r>0||!a||o.doesIntersect2(n.start,n.end,a.min,a.max)&&e.getGlyph(a).draw(c,a,i,e,t)}}}}),{name:"LinearApolloDisplayRenderFeatures"}))}})))}(0,t);return i.named("LinearApolloDisplayMouseEvents").volatile((()=>({apolloDragging:null,cursor:void 0}))).views((e=>({getMousePosition(t){const n=cl(t,e.lgv),{bp:r,regionNumber:o,y:i}=n,a=Math.floor(i/e.apolloRowHeight),s=e.featureLayouts[o].get(a);if(!s)return 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n=e.getMousePosition(t);sl(n)&&e.getGlyph(n.feature).onMouseDown(e,n,t)},onMouseMove(t){const n=e.getMousePosition(t);if(e.apolloDragging)return e.setCursor("col-resize"),void e.continueDrag(n,t);sl(n)?e.getGlyph(n.feature).onMouseMove(e,n,t):(e.setHoveredFeature(),e.setCursor())},onMouseLeave(t){e.setDragging(),e.setHoveredFeature();const n=e.getMousePosition(t);sl(n)&&e.getGlyph(n.feature).onMouseLeave(e,n,t)},onMouseUp(t){const n=e.getMousePosition(t);sl(n)?e.getGlyph(n.feature).onMouseUp(e,n,t):e.setSelectedFeature(),e.apolloDragging&&e.endDrag()}}))).actions((e=>({afterAttach(){c.addDisposer(e,l.autorun((()=>{if(!e.lgv.initialized||e.regionCannotBeRendered())return;const t=e.overlayCanvas?.getContext("2d");if(!t)return;t.clearRect(0,0,e.lgv.dynamicBlocks.totalWidthPx,e.featuresHeight);const{apolloDragging:n,hoveredFeature:r}=e;if(!r)return;const 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i.named("LinearApolloReferenceSequenceDisplayRendering").volatile((()=>({seqTrackCanvas:null,seqTrackOverlayCanvas:null,theme:s.createTheme()}))).actions((e=>({setSeqTrackCanvas(t){e.seqTrackCanvas=t},setSeqTrackOverlayCanvas(t){e.seqTrackOverlayCanvas=t},setTheme(t){e.theme=t},afterAttach(){c.addDisposer(e,l.autorun((()=>{const{lgv:t,seqTrackCanvas:n,theme:r,highContrast:i,showStartCodons:a,showStopCodons:s,sequenceRowHeight:c,session:l}=e;if(!t.initialized||e.regionCannotBeRendered()||!n)return;if(3/t.bpPerPx<1)return;const{bpPerPx:u,offsetPx:d,dynamicBlocks:A}=t;!function(e,t,n,r,i,a,s,c,l,u){const d=e.getContext("2d");if(!d)return;d.clearRect(0,0,e.width,e.height);const{apolloDataStore:A}=u;for(const e of i.contentBlocks){const i=e.offsetPx-r;eh(d,n,t,a,i,e.widthPx,l,e.reversed);const u=A.assemblies.get(e.assemblyName),f=u?.getByRefName(e.refName),h=Math.floor(e.start),g=Math.ceil(e.end);let p=f?.getSequence(h,g);if(!p)return;p=p.toUpperCase(),e.reversed&&(p=o.revcom(p));const 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n=e.session;e.session.queueDialog((r=>[Mf,{session:n,handleClose:()=>{r()},featureTypes:c.getSnapshot(t),onUpdate:t=>{e.updateFilteredFeatureTypes(t)}}]))}}]}}})).actions((e=>({setSelectedFeature(t){e.session.apolloSetSelectedFeature(t)},setHoveredFeature(t){e.session.apolloSetHoveredFeature(t)},showFeatureDetailsWidget(t,n){const[r]=e.regions,{assemblyName:o,refName:i}=r,a=e.getAssemblyId(o);if(!a)return;const{session:s}=e,{changeManager:c}=s.apolloDataStore,[l,u]=n??["ApolloFeatureDetailsWidget","apolloFeatureDetailsWidget"],d=s.addWidget(l,u,{feature:t,assembly:a,refName:i,changeManager:c});s.showWidget(d)},afterAttach(){c.addDisposer(e,l.autorun((()=>{e.lgv.initialized&&!e.regionCannotBeRendered()&&(e.session.apolloDataStore.loadFeatures(e.regions),e.lgv.bpPerPx<=e.zoomThreshold&&e.session.apolloDataStore.loadRefSeq(e.regions))}),{name:"LinearApolloSixFrameDisplayLoadFeatures",delay:1e3}))}})))}(0,t);return i.named("LinearApolloSixFrameDisplayLayouts").props({featuresMinMaxLimit:5e5}).volatile((()=>({seenFeatures:l.observable.map()}))).views((e=>({get featuresMinMax(){const{assemblyManager:t}=e.session;return e.lgv.displayedRegions.map((n=>{const r=t.get(n.assemblyName);let i,a;const{end:s,refName:c,start:l}=n;for(const[,t]of e.seenFeatures)c!==r?.getCanonicalRefName(t.refSeq)||!o.doesIntersect2(l,s,t.min,t.max)||t.length>e.featuresMinMaxLimit||(void 0===i&&({min:i}=t),void 0===a&&({max:a}=t),t.minWithChildren<i&&({min:i}=t),t.maxWithChildren>a&&({max:a}=t));if(void 0!==i&&void 0!==a)return[i,a]}))},getGlyph:e=>hh,featureLabelSpacer:t=>e.showFeatureLabels?2*t-1:t}))).actions((e=>({addSeenFeature(t){e.seenFeatures.set(t._id,t)},deleteSeenFeature(t){e.seenFeatures.delete(t)}}))).views((e=>({get geneTrackRowNums(){return[4,5].map((t=>e.featureLabelSpacer(t)))}}))).views((e=>({get featureLayouts(){const{assemblyManager:t}=e.session;return e.lgv.displayedRegions.map(((n,r)=>{const i=t.get(n.assemblyName),a=new Map;if(!e.featuresMinMax[r])return a;const{end:s,refName:l,start:u}=n;for(const[t,n]of e.seenFeatures.entries()){if(!c.isAlive(n)){e.deleteSeenFeature(t);continue}if(l!==i?.getCanonicalRefName(n.refSeq)||!o.doesIntersect2(u,s,n.min,n.max))continue;const{featureTypeOntology:r}=e.session.apolloDataStore.ontologyManager;if(!r)throw new Error("featureTypeOntology is undefined");if(n.looksLikeGene){const t=1==n.strand?e.geneTrackRowNums[0]:e.geneTrackRowNums[1];a.get(t)||a.set(t,[]);const i=a.get(t);i?.push({rowNum:t,feature:n});const{children:s}=n;if(!s)continue;for(const[,t]of s)if(r.isTypeOf(t.type,"transcript")){const{cdsLocations:n,strand:i,children:s}=t;if(s)for(const[,t]of s){if(!r.isTypeOf(t.type,"exon"))continue;const n=1==t.strand?e.geneTrackRowNums[0]:e.geneTrackRowNums[1],o=a.get(n);o?.push({rowNum:n,feature:t})}for(const r of n)for(const n of r){const r=o.getFrame(n.min,n.max,i??1,n.phase),s=(e.showFeatureLabels?[0,5,3,1,15,13,11]:[0,2,1,0,8,7,6]).at(r);if(!s)continue;a.get(s)||a.set(s,[]);const c=a.get(s);c?.push({rowNum:s,feature:t})}}}}return a}))},getFeatureLayoutPosition(e){const{featureLayouts:t}=this;for(const[n,r]of t.entries())for(const[,t]of r)for(const{feature:r}of t)if(e._id===r._id)return{layoutIndex:n,layoutRow:0,featureRow:0}}}))).views((e=>({get highestRow(){return 5}}))).actions((e=>({afterAttach(){c.addDisposer(e,l.autorun((()=>{if(e.lgv.initialized&&!e.regionCannotBeRendered())for(const t of e.regions){const n=e.session.apolloDataStore.assemblies.get(t.assemblyName),r=n?.getByRefName(t.refName),i=r?.features;if(i)for(const[,n]of i)o.doesIntersect2(t.start,t.end,n.min,n.max)&&!e.seenFeatures.has(n._id)&&e.addSeenFeature(n)}}),{name:"LinearApolloSixFrameDisplaySetSeenFeatures",delay:1e3}))}})))}(0,t).named("LinearApolloSixFrameDisplayRendering").props({apolloRowHeight:20,detailsMinHeight:200,detailsHeight:200,lastRowTooltipBufferHeight:120,isShown:!0,filteredTranscripts:c.types.array(c.types.string)}).volatile((()=>({canvas:null,overlayCanvas:null,collaboratorCanvas:null,theme:s.createTheme()}))).views((e=>({get featuresHeight(){return(e.highestRow+1)*e.apolloRowHeight*(e.showFeatureLabels?2:1)+e.lastRowTooltipBufferHeight}}))).actions((e=>({toggleShown(){e.isShown=!e.isShown},setDetailsHeight(t){e.detailsHeight=e.isShown?Math.max(Math.min(t,e.height-100),Math.min(e.height,e.detailsMinHeight)):t},setCanvas(t){e.canvas=t},setOverlayCanvas(t){e.overlayCanvas=t},setCollaboratorCanvas(t){e.collaboratorCanvas=t},setTheme(t){e.theme=t}}))).actions((e=>({afterAttach(){c.addDisposer(e,l.autorun((()=>{if(!e.lgv.initialized||e.regionCannotBeRendered())return;const t=e.collaboratorCanvas?.getContext("2d");if(t){t.clearRect(0,0,e.lgv.dynamicBlocks.totalWidthPx,e.featuresHeight);for(const n of e.session.collaborators){const{locations:r}=n;if(0===r.length)continue;let o=0;for(const i of e.lgv.displayedRegions){for(const a of r){if(a.refSeq!==i.refName)continue;const{end:r,refSeq:s,start:c}=a,l=e.lgv.bpToPx({refName:s,coord:c,regionNumber:o});if(!l)continue;const u=l.offsetPx-e.lgv.offsetPx,d=(r-c)/e.lgv.bpPerPx;t.fillStyle="rgba(0,255,0,.2)",t.fillRect(u,1,d,100),t.fillStyle="black",t.fillText(n.name,u+1,11,d-2)}o++}}}}),{name:"LinearApolloSixFrameDisplayRenderCollaborators"})),c.addDisposer(e,l.autorun((()=>{const{apolloRowHeight:t,canvas:n,featureLayouts:r,featuresHeight:i,lgv:a,session:s,theme:c,showFeatureLabels:l,showStartCodons:u,showStopCodons:d}=e;if(!a.initialized||e.regionCannotBeRendered())return;const{bpPerPx:A,offsetPx:f,displayedRegions:h,dynamicBlocks:g}=a,p=n?.getContext("2d");if(p){p.clearRect(0,0,g.totalWidthPx,i);for(const[t,n]of r.entries()){const r=h[t];for(const[i,a]of n.entries())for(const{feature:n}of a){if(!n.looksLikeGene)continue;if(!o.doesIntersect2(r.start,r.end,n.min,n.max))continue;const{topLevelFeature:a}=n,s=e.getGlyph(a);void 0!==s&&s.draw(p,a,i,e,t)}}if(u||d){const{apolloDataStore:e}=s;for(const n of g.contentBlocks){const r=e.assemblies.get(n.assemblyName),o=r?.getByRefName(n.refName),i=Math.floor(n.start),a=Math.ceil(n.end);let s=o?.getSequence(i,a);if(!s)break;s=s.toUpperCase();const h=Math.round(n.offsetPx-f-(n.start-i)/A);for(let e=0;e<s.length;e++){const n=i+e;gh(p,s.slice(e,e+3),h,e,c,!0,A,n,t,l,u,d)}}}}}),{name:"LinearApolloSixFrameDisplayRenderFeatures"}))}})))}(0,t);return i.named("LinearApolloSixFrameDisplayMouseEvents").volatile((()=>({apolloDragging:null,cursor:void 0}))).views((e=>({getMousePosition(t){const n=cl(t,e.lgv),{bp:r,regionNumber:i,y:a}=n,s=Math.floor(a/e.apolloRowHeight)+1,c=e.featureLayouts[i].get(s);if(!c)return n;const{featureTypeOntology:l}=e.session.apolloDataStore.ontologyManager;if(!l)throw new Error("featureTypeOntology is undefined");let u;if(e.geneTrackRowNums.includes(s)?(u=c.find((e=>"exon"==e.feature.type&&r>=e.feature.min&&r<=e.feature.max)),u||(u=c.find((e=>r>=e.feature.min&&r<=e.feature.max)))):u=c.find((t=>{const{feature:n}=t,i=n.attributes.get("gff_id")?.toString();if(!l.isTypeOf(n.type,"transcript"))return!1;for(const t of n.cdsLocations)for(const a of t){const t=o.getFrame(a.min,a.max,n.strand??1,a.phase),c=(e.showFeatureLabels?[0,5,3,1,15,13,11]:[0,2,1,0,8,7,6]).at(t);if(s===c&&r>=a.min&&r<=a.max)return void 0===i||!e.filteredTranscripts.includes(i)}return!1})),!u)return n;const{feature:d}=u;return{...n,feature:d}}}))).actions((e=>({continueDrag(t,n){if(!e.apolloDragging)throw new Error("continueDrag() called with no current drag in progress");n.stopPropagation(),e.apolloDragging={...e.apolloDragging,current:t}},setDragging(t){e.apolloDragging=t??null}}))).actions((e=>({setCursor(t){e.cursor!==t&&(e.cursor=t)},updateFilteredTranscripts(t){e.filteredTranscripts=c.cast(t)}}))).actions((()=>({onClick(){}})))}(0,t).views((e=>({contextMenuItems(t){const{hoveredFeature:n}=e;if(!n)return[];const r=e.getMousePosition(t),{topLevelFeature:o}=n.feature,i=e.getGlyph(o);return sl(r)?i.getContextMenuItems(e,r):[]}}))).actions((e=>({startDrag(t,n,r,o=!1){e.apolloDragging={start:t,current:t,feature:n,edge:r,shrinkParent:o}},endDrag(){if(!e.apolloDragging)throw new Error("endDrag() called with no current drag in progress");const{current:t,edge:n,feature:r,start:o,shrinkParent:i}=e.apolloDragging;if(Math.abs(t.x-o.x)<=4)return e.setDragging(),void e.setCursor();const{displayedRegions:a}=e.lgv,s=e.getAssemblyId(a[o.regionNumber].assemblyName),c=al(r,t.bp,n,i),l="max"===n?new qr({typeName:"LocationEndChange",changedIds:c.map((e=>e.featureId)),changes:c.map((e=>({featureId:e.featureId,oldEnd:e.oldLocation,newEnd:e.newLocation}))),assembly:s}):new Ur({typeName:"LocationStartChange",changedIds:c.map((e=>e.featureId)),changes:c.map((e=>({featureId:e.featureId,oldStart:e.oldLocation,newStart:e.newLocation}))),assembly:s});e.changeManager.submit(l),e.setDragging(),e.setCursor()}}))).actions((e=>({onMouseDown(t){const n=e.getMousePosition(t);sl(n)&&e.getGlyph(n.feature).onMouseDown(e,n,t)},onMouseMove(t){const n=e.getMousePosition(t);if(e.apolloDragging)return e.setCursor("col-resize"),void e.continueDrag(n,t);sl(n)?e.getGlyph(n.feature).onMouseMove(e,n,t):(e.setHoveredFeature(),e.setCursor())},onMouseLeave(t){e.setDragging(),e.setHoveredFeature();const n=e.getMousePosition(t);sl(n)&&e.getGlyph(n.feature).onMouseLeave(e,n,t)},onMouseUp(t){const n=e.getMousePosition(t);sl(n)?e.getGlyph(n.feature).onMouseUp(e,n,t):e.setSelectedFeature(),e.apolloDragging&&e.endDrag()}}))).actions((e=>({afterAttach(){c.addDisposer(e,l.autorun((()=>{if(!e.lgv.initialized||e.regionCannotBeRendered())return;const t=e.overlayCanvas?.getContext("2d");if(!t)return;t.clearRect(0,0,e.lgv.dynamicBlocks.totalWidthPx,e.featuresHeight);const{apolloDragging:n,hoveredFeature:r}=e;if(!r)return;const o=e.getGlyph(r.feature);o.drawHover(e,t),o.drawTooltip(e,t),n&&e.getGlyph(n.feature.topLevelFeature).drawDragPreview(e,t)}),{name:"LinearApolloSixFrameDisplayRenderMouseoverAndDrag"}))}})))}(0,t).props({tabularEditor:c.types.optional(tf,{})}).named("LinearApolloSixFrameDisplay")}const mh=n.ConfigurationSchema("ApolloPlugin",{ontologies:c.types.array(Iu),featureTypeOntologyName:{description:"Name of the feature type ontology",type:"string",defaultValue:"Sequence Ontology"},hasRole:{description:"Flag used internally by jbrowse-plugin-apollo",type:"boolean",defaultValue:!1},geneBackgroundColor:{description:"Color for feature background",type:"string",defaultValue:"jexl:geneBackgroundColor(featureType)",contextVariable:["featureType"]}}),yh=(e,t)=>{const{featureTypeOntology:n}=t.apolloDataStore.ontologyManager;if(!n)throw new Error("featureTypeOntology is undefined");return n.isTypeOf(e.type,"gene")||n.isTypeOf(e.type,"transcript")||n.isTypeOf(e.type,"pseudogene")||n.isTypeOf(e.type,"pseudogenic_transcript")},_h=(e,t)=>{const{featureTypeOntology:n}=t.apolloDataStore.ontologyManager;if(!n)throw new Error("featureTypeOntology is undefined");return n.isTypeOf(e.type,"gene")||n.isTypeOf(e.type,"pseudogene")},vh=(e,t)=>{const{featureTypeOntology:n}=t.apolloDataStore.ontologyManager;if(!n)throw new Error("featureTypeOntology is undefined");return n.isTypeOf(e.type,"transcript")||n.isTypeOf(e.type,"pseudogenic_transcript")};function bh(e){const{attributes:t}=e,n=["gene_name","gene_id","gene_stable_id"];for(const e of n){const n=t?.[e];if(n?.[0])return n[0]}return""}const Ch=e=>{const t=function(e){const{attributes:t}=e,n=["name","gff_name","transcript_name","gene_name"];for(const e of n){const n=t?.[e];if(n?.[0])return n[0]}return""}(e),n=function(e){const{attributes:t}=e,n=["id","gff_id","transcript_id","gene_id","gene_stable_id","stable_id"];for(const e of n){const n=t?.[e];if(n?.[0])return n[0]}return""}(e);return t?`${e.type} - ${t}`:n?`${e.type} - ${n}`:e.type};function Ih({annotationFeature:e,assembly:t,handleClose:n,refSeqId:r,session:o,region:a}){const l=o,{featureTypeOntology:d}=l.apolloDataStore.ontologyManager,A=u.useMemo((()=>Object.keys(e.children??{})),[e]),[f,h]=u.useState(!0),[g,p]=u.useState(A),[m,y]=u.useState(""),[_,v]=u.useState([]),[b,C]=u.useState(!1),[I,w]=u.useState(),E=l.apolloDataStore.assemblies.get(t.name),x=E?.refSeqs.get(r),S=x?.getFeatures(a.start,a.end),B=()=>{const e=[];for(const t of S??[])if(!(t.min>a.end||t.max<a.start)&&d?.isTypeOf(t.type,"gene")){const n=c.getSnapshot(t);e.push(n)}return e};u.useEffect((()=>{y("");const e=B();v(e),w(e[0])}),[g,f,a]);const k=async e=>{if(I)for(const n of Object.keys(e)){const r=e[n];if(r.strand=I.strand,r.children)for(const e of Object.keys(r.children))r.children[e].strand=I.strand;const o=new Nr({parentFeatureId:I._id,changedIds:[I._id],typeName:"AddFeatureChange",assembly:t.name,addedFeature:r});await R(o,n)}},Q=async n=>{const o=(new ut).toHexString(),i=Math.min(...Object.values(n).map((e=>e.min))),a=Math.max(...Object.values(n).map((e=>e.max))),s=new Nr({changedIds:[o],typeName:"AddFeatureChange",assembly:t.name,addedFeature:{_id:o,refSeq:r,min:i,max:a,strand:e.strand,type:"gene",children:n,attributes:{name:[bh(e)],gene_name:[bh(e)]}}});await R(s,o)},N=async(e,n)=>{if(!I)return;const r=[];e!==I.min&&r.push(new Ur({typeName:"LocationStartChange",changedIds:[I._id],featureId:I._id,assembly:t.name,oldStart:I.min,newStart:e})),n!==I.max&&r.push(new qr({typeName:"LocationEndChange",changedIds:[I._id],featureId:I._id,assembly:t.name,oldEnd:I.max,newEnd:n}));for(const e of r)await R(e)},R=async(e,t)=>{await l.apolloDataStore.changeManager.submit(e).then((()=>{l.apolloSetSelectedFeature(t)}))};return i.jsxs(Al,{open:!0,title:"Create Apollo Annotation",handleClose:n,fullWidth:!0,maxWidth:"sm",children:[i.jsx(s.DialogTitle,{fontSize:15,children:"Select the feature to be copied to apollo track"}),i.jsxs(s.DialogContent,{children:[i.jsxs(s.Box,{sx:{ml:3},children:[yh(e,l)&&i.jsx(s.FormControlLabel,{control:i.jsx(s.Checkbox,{size:"small",checked:f,onChange:e=>{const t=e.target.checked;h(t),p(t?A:[])}}),label:`${Ch(e)} 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(${e.min+1}..${e.max})`},e._id)))})})]}),i.jsx(s.Box,{sx:{ml:3},children:i.jsx(s.FormGroup,{children:i.jsx(s.FormControlLabel,{control:i.jsx(s.Checkbox,{checked:b,onChange:e=>{C(e.target.checked)}}),label:"Create new gene"})})})]})]}),i.jsxs(s.DialogActions,{children:[i.jsx(s.Button,{variant:"contained",type:"submit",disabled:0===g.length||!f&&g.length>0&&!I,onClick:async()=>{if(f){if(_h(e,l)&&(await(async()=>{let n;if(e.children&&g.length!==Object.values(e.children).length){const r={};for(const t of g)r[t]=e.children[t];n=new Nr({changedIds:[e._id],typeName:"AddFeatureChange",assembly:t.name,addedFeature:{...e,children:r}})}else n=new Nr({changedIds:[e._id],typeName:"AddFeatureChange",assembly:t.name,addedFeature:e});await R(n,e._id)})(),o.notify("Successfully copied selected gene and transcript(s)","success")),vh(e,l))if(I&&!b){const t={};if(t[e._id]=e,I.max<e.max||I.min>e.min){const n=Math.min(I.min,e.min),r=Math.max(I.max,e.max);await N(n,r),await k(t)}else await k(t);o.notify("Successfully copied selected transcripts to destination gene","success")}else{const t={};t[e._id]=e,await Q(t),o.notify("Successfully created a new gene with selected transcripts","success")}}else{if(!e.children)return;if(I&&!b){const t={};for(const n of g)t[n]=e.children[n];const n=Math.min(...Object.values(t).map((e=>e.min))),r=Math.max(...Object.values(t).map((e=>e.max)));if(I.min>n||I.max<r){const e=Math.min(I.min,n),o=Math.max(I.max,r);await N(e,o),await k(t)}else await k(t);o.notify("Successfully copied transcript to destination gene","success")}else{const t={};for(const n of g)t[n]=e.children[n];await Q(t),o.notify("Successfully created a new gene with selected transcript","success")}}n()},children:"Create"}),i.jsx(s.Button,{variant:"outlined",type:"submit",onClick:n,children:"Cancel"})]}),m?i.jsx(s.DialogContent,{children:i.jsx(s.DialogContentText,{color:"error",children:m})}):null]})}function wh(e){if("LinearPileupDisplay"!==e.name)return e;const{stateModel:t}=e,n=t.views((e=>({getFirstRegion:()=>o.getContainingView(e).dynamicBlocks.contentBlocks[0],getAssembly(){const t=e.getFirstRegion(),n=o.getSession(e),{assemblyManager:r}=n,{assemblyName:i}=t,a=r.get(i);if(!a)throw new Error(`Could not find assembly named ${i}`);return a},getRefSeqId(t){const n=e.getFirstRegion(),{refName:r}=n,{refNameAliases:o}=t;if(!o)throw new Error(`Could not find aliases for ${t.name}`);const i=[...Object.entries(o)].filter((([e,t])=>e!==t)).map((([e,t])=>({_id:e,name:t}))),a=i.find((e=>e.name===r))?._id;if(!a)throw new Error(`Could not find refSeqId named ${r}`);return a},getAnnotationFeature(){const t=e.contextMenuFeature,n=e.getAssembly(),r=e.getRefSeqId(n),o=t.get("start"),i=t.get("end"),a=t.get("strand"),s=t.get("name"),c=function(e){const t=/(\d+)([MIDNSHPX=])/g,n=[];let r;for(;null!==(r=t.exec(e));)n.push([r[2],Number.parseInt(r[1],10)]);return n}(t.get("CIGAR"));let l,u=o;const d=[];for(const[e,t]of 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t=e.getBackendDriver(n.assemblyName);if(!t)return;const[r,o]=yield t.getFeatures(n);if(0===r.length)continue;const{assemblyName:i,refName:a}=n;let s=e.assemblies.get(i);s||(s=e.assemblies.put({_id:i,refSeqs:{}}));const[c]=r;let l=s.refSeqs.get(c.refSeq);l||(l=s.refSeqs.put({_id:c.refSeq,name:a,features:{}}));for(const e of r)l.features.has(e._id)||l.features.put(e);e.addCheckResults(o)}})),loadRefSeq:c.flow((function*(t){for(const n of t){const t=e.getBackendDriver(n.assemblyName);if(!t)return;const{refSeq:r,seq:o}=yield t.getSequence(n),{assemblyName:i,end:a,refName:s,start:c}=n;let l=e.assemblies.get(i);l||(l=e.assemblies.put({_id:i,refSeqs:{}}));let u=l.refSeqs.get(r);u||(u=l.refSeqs.put({_id:r,name:s,sequence:[]})),u.addSequence({start:c,stop:a,sequence:o})}}))})))}(r),a=t.props({apolloDataStore:c.types.optional(i,{typeName:"Client"}),apolloSelectedFeature:c.types.safeReference(r),jobsManager:c.types.optional(Vh,{}),isLocked:c.types.optional(c.types.boolean,!1),changeInProgress:c.types.optional(c.types.boolean,!1)}).volatile((()=>({apolloHoveredFeature:void 0,abortController:new AbortController}))).extend((()=>{const e=l.observable.array([]);return{views:{get collaborators(){return e}},actions:{addOrUpdateCollaborator(t){const n=e.find((e=>e.id===t.id));n?n.locations=t.locations:e.push(t)}}}})).actions((e=>({apolloSetSelectedFeature(t){e.apolloSelectedFeature=t},apolloSetHoveredFeature(t){e.apolloHoveredFeature=t},addApolloTrackConfig(t,r){const o=`apollo_track_${t.name}`;e.tracks.some((e=>e.trackId===o))||e.addTrackConf({type:"ApolloTrack",trackId:o,name:`Annotations 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n)r.push({assemblyId:e.assemblyName,refSeq:e.refName,start:e.start,end:e.end});e.postUserLocation(r)}}}))).actions((e=>({apolloSetEventualSelectedFeature:l.flow((function*(t){yield l.when((()=>Boolean(e.apolloDataStore.getFeature(t)))),e.apolloSetSelectedFeature(t)}))}))).volatile((e=>({previousSnapshot:c.getSnapshot(e)}))).actions((e=>({afterCreate(){c.applySnapshot(e,{name:e.name,id:e.id});const{internetAccounts:t,jbrowse:r,reloadPluginManagerCallback:o}=c.getRoot(e);c.addDisposer(e,l.autorun((()=>{const n=[];for(const t of e.views){if("LinearGenomeView"!==t.type)return;const r=t;if(r.initialized){const{dynamicBlocks:t}=r;for(const r of t.contentBlocks){const{assemblyName:t,end:o,refName:i,start:a}=r,s=e.apolloDataStore.assemblies.get(t);s&&"CollaborationServerDriver"===s.backendDriverType&&n.push({assemblyName:t,refName:i,start:a,end:o})}}}if(0===n.length){for(const e of t)"baseURL"in e&&e.postUserLocation([]);return}const r=[];for(const e of t)if("baseURL"in e){for(const e of 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t=e.getTrackActionMenuItems;return{getTrackActionMenuItems(r){if("ApolloTrack"===r.type||"ReferenceSequenceTrack"===r.type)return t?.(r);const o=n.readConfObject(r,"trackId");return o.endsWith("-sessionTrack")?[...t?.(r)??[],{label:"Save track to Apollo",onClick:async()=>{const{internetAccounts:t,jbrowse:n}=c.getRoot(e);let i;i=Lr(c.getSnapshot(n)),0===Object.keys(i).length&&(i=void 0);const a={...c.getSnapshot(r),trackId:o.slice(0,o.length-13)};for(const n of t){if("ApolloInternetAccount"!==n.type)continue;const t=new Pr({typeName:"ImportJBrowseConfigChange",oldJBrowseConfig:i,newJBrowseConfig:{...i,tracks:i?.tracks&&[...i.tracks,a]}}),{internetAccountId:r}=n;await e.apolloDataStore.changeManager.submit(t,{internetAccountId:r});const{notify:o}=e;o("Track added","success")}e.deleteTrackConf(r),n.addTrackConf(a)},icon:Wh}]:[...t?.(r)??[],{label:"Remove track from Apollo",onClick:async()=>{const{internetAccounts:t,jbrowse:n}=c.getRoot(e);let i;i=Lr(c.getSnapshot(n)),0===Object.keys(i).length&&(i=void 0);const a=i?.tracks?.filter((e=>e.trackId!==o));for(const n of t){if("ApolloInternetAccount"!==n.type)continue;const t=new Pr({typeName:"ImportJBrowseConfigChange",oldJBrowseConfig:i,newJBrowseConfig:{...i,tracks:a}}),{internetAccountId:r}=n;await e.apolloDataStore.changeManager.submit(t,{internetAccountId:r});const{notify:o}=e;o("Track removed","success")}e.deleteTrackConf(r),n.deleteTrackConf(r)},icon:Wh}]}}}));return c.types.snapshotProcessor(a,{postProcessor(e,t){e.apolloSelectedFeature=void 0;const n=Object.fromEntries(Object.entries(e.apolloDataStore.assemblies).filter((([,e])=>"InMemoryFileDriver"===e.backendDriverType)));if(e.apolloDataStore={typeName:"Client",assemblies:n,checkResults:{}},!t)return e;const{apolloDataStore:r}=t,{checkResults:o}=r;for(const[,t]of o){const[n]=t.ids;if(!n)continue;const 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adapter",configSchema:Fd,AdapterClass:Dd,description:"Apollo Text Search adapter"})))}(e),e.addWidgetType((()=>{const e=n.ConfigurationSchema("ApolloFeatureDetailsWidget",{});return new r.WidgetType({name:"ApolloFeatureDetailsWidget",heading:"Apollo feature details",configSchema:e,stateModel:cA,ReactComponent:tA})})),e.addWidgetType((()=>{const e=n.ConfigurationSchema("ApolloTranscriptDetails",{});return new r.WidgetType({name:"ApolloTranscriptDetails",heading:"Apollo transcript details",configSchema:e,stateModel:lA,ReactComponent:jA})})),e.addTrackType((()=>{const t=n.ConfigurationSchema("ApolloTrack",{adapter:""},{baseConfiguration:r.createBaseTrackConfig(e),explicitIdentifier:"trackId"});return new r.TrackType({name:"ApolloTrack",configSchema:t,stateModel:r.createBaseTrackModel(e,"ApolloTrack",t)})})),e.addInternetAccountType((()=>new r.InternetAccountType({name:"ApolloInternetAccount",configSchema:Go,stateModel:bd(Go)}))),e.addDisplayType((()=>new 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out",icon:Hh,onClick:e=>{e.queueDialog((t=>[Yu,{session:e,handleClose:()=>{t()}}]))}}))}},Object.defineProperty(e,"__esModule",{value:!0})}));
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t,n=e.assemblies,r=e.configuration,o=e.internetAccounts,i=e.plugins,a=e.tracks,s=q(e,Ct);if(n&&(s.assemblies=n.filter((function(e){return"ApolloSequenceAdapter"!==e.sequence.adapter.type}))),null!=r&&null!==(t=r.ApolloPlugin)&&void 0!==t&&t.hasRole){var l=q(r.ApolloPlugin,At);s.configuration=B(B({},r),{},{ApolloPlugin:l})}return o&&(s.internetAccounts=o.filter((function(e){return"ApolloInternetAccount"!==e.type}))),i&&(s.plugins=i.filter((function(e){return"Apollo"!==e.name}))),a&&(s.tracks=a.filter((function(e){return"ApolloTrack"!==e.type}))),s}var Nt=function(e){function t(e,n){var r;return R(this,t),D(r=T(this,t,[e,n]),"typeName","ImportJBrowseConfigChange"),D(r,"oldJBrowseConfig",void 0),D(r,"newJBrowseConfig",void 0),r.oldJBrowseConfig=e.oldJBrowseConfig,r.newJBrowseConfig=e.newJBrowseConfig,r}return M(t,e),I(t,[{key:"toJSON",value:function(){return{typeName:this.typeName,oldJBrowseConfig:this.oldJBrowseConfig,newJBrowseConfig:this.newJBrowseConfig}}},{key:"getInverse",value:function(){return new t({typeName:"ImportJBrowseConfigChange",oldJBrowseConfig:this.newJBrowseConfig,newJBrowseConfig:this.oldJBrowseConfig},{logger:this.logger})}}])}(ct),Tt=function(e){function t(e,n){var r;return R(this,t),D(r=T(this,t,[e,n]),"typeName","LocationEndChange"),D(r,"changes",void 0),r.changes="changes"in e?e.changes:[e],r}return M(t,e),I(t,[{key:"toJSON",value:function(){var e=this.assembly,t=this.changedIds,n=this.changes,r=this.typeName;if(1===n.length){var o=G(n,1)[0];return{typeName:r,changedIds:t,assembly:e,featureId:o.featureId,oldEnd:o.oldEnd,newEnd:o.newEnd}}return{typeName:r,changedIds:t,assembly:e,changes:n}}},{key:"getInverse",value:function(){var e=this.assembly,n=this.changes,r=this.logger,o=this.typeName;return new t({changedIds:W(this.changedIds).reverse(),typeName:o,changes:W(n).reverse().map((function(e){return{featureId:e.featureId,oldEnd:e.newEnd,newEnd:e.oldEnd}})),assembly:e},{logger:r})}}])}(ft);function Rt(e){return"LocationEndChange"===e.typeName}var Et=function(e){function t(e,n){var r;return R(this,t),D(r=T(this,t,[e,n]),"typeName","LocationStartChange"),D(r,"changes",void 0),r.changes="changes"in e?e.changes:[e],r}return M(t,e),I(t,[{key:"toJSON",value:function(){var e=this.assembly,t=this.changedIds,n=this.changes,r=this.typeName;if(1===n.length){var o=G(n,1)[0];return{typeName:r,changedIds:t,assembly:e,featureId:o.featureId,oldStart:o.oldStart,newStart:o.newStart}}return{typeName:r,changedIds:t,assembly:e,changes:n}}},{key:"getInverse",value:function(){var e=this.assembly,n=this.changes,r=this.logger,o=this.typeName;return new t({changedIds:W(this.changedIds).reverse(),typeName:o,changes:W(n).reverse().map((function(e){return{featureId:e.featureId,oldStart:e.newStart,newStart:e.oldStart}})),assembly:e},{logger:r})}}])}(ft);function It(e){return"LocationStartChange"===e.typeName}var jt=function(e){function t(e,n){var r;return R(this,t),D(r=T(this,t,[e,n]),"typeName","MergeExonsChange"),D(r,"changes",void 0),r.changes="changes"in e?e.changes:[e],r}return M(t,e),I(t,[{key:"notification",get:function(){return"Exons successfully merged"}},{key:"toJSON",value:function(){var e=this.assembly,t=this.changedIds,n=this.changes,r=this.typeName;if(1===n.length){var o=G(n,1)[0];return{typeName:r,changedIds:t,assembly:e,firstExon:o.firstExon,secondExon:o.secondExon,parentFeatureId:o.parentFeatureId}}return{typeName:r,changedIds:t,assembly:e,changes:n}}},{key:"getInverse",value:function(){var e,t=this.assembly,n=this.changes,r=this.logger,o=W(this.changedIds).reverse(),i=W(n).reverse().map((function(e){return{exonsToRestore:[e.firstExon,e.secondExon],parentFeatureId:e.parentFeatureId}}));return null===(e=r.debug)||void 0===e||e.call(r,"INVERSE CHANGE '".concat(JSON.stringify(i),"'")),new Dt({changedIds:o,typeName:"UndoMergeExonsChange",changes:i,assembly:t},{logger:r})}}])}(ft),Dt=function(e){function t(e,n){var r;return R(this,t),D(r=T(this,t,[e,n]),"typeName","UndoMergeExonsChange"),D(r,"changes",void 0),r.changes="changes"in e?e.changes:[e],r}return M(t,e),I(t,[{key:"toJSON",value:function(){var e=this.assembly,t=this.changedIds,n=this.changes,r=this.typeName;if(1===n.length){var o=G(n,1)[0];return{typeName:r,changedIds:t,assembly:e,exonsToRestore:o.exonsToRestore,parentFeatureId:o.parentFeatureId}}return{typeName:r,changedIds:t,assembly:e,changes:n}}},{key:"getInverse",value:function(){var e=this.assembly,t=this.changes,n=this.logger,r=W(this.changedIds).reverse(),o=W(t).reverse().map((function(e){return{firstExon:e.exonsToRestore[0],secondExon:e.exonsToRestore[1],parentFeatureId:e.parentFeatureId}}));return new jt({changedIds:r,typeName:"MergeExonsChange",changes:o,assembly:e},{logger:n})}}])}(ft);function Ot(e,t){for(var n=[],r=0;r<e.length;r+=t){var o=e.slice(r,r+t);n.push(o)}return n}function Ft(e){var t,n,r=e,o=null===(t=r.attributes.get("gff_id"))||void 0===t?void 0:t.join(",");if(o)return"ID=".concat(o," (_id: ").concat(e._id.toString(),")");var i=null===(n=r.attributes.get("gff_name"))||void 0===n?void 0:n.join(",");return i?"Name=".concat(i," (_id: ").concat(e._id.toString(),")"):"_id: ".concat(e._id.toString())}function Mt(e){var t={};if(!e)return t;for(var n=0,r=Object.entries(e);n<r.length;n++){var o=G(r[n],2),i=o[1];t[o[0]]=null==i?void 0:i.slice()}return t}function Lt(e){if(!e)return"";for(var t=[],n=0,r=Object.entries(e);n<r.length;n++){var o=G(r[n],2),i=o[1],a=o[0];a.startsWith("gff_")&&(a=(a=a.slice(4)).charAt(0).toUpperCase()+a.slice(1)),t.push(i?"".concat(a,"=").concat(i.join(",")):a)}return encodeURIComponent(t.join(";"))}var Pt=function(e){function t(e,n){var r;return R(this,t),D(r=T(this,t,[e,n]),"typeName","MergeTranscriptsChange"),D(r,"changes",void 0),r.changes="changes"in e?e.changes:[e],r}return M(t,e),I(t,[{key:"notification",get:function(){return"Transcripts successfully merged"}},{key:"toJSON",value:function(){var e=this.assembly,t=this.changedIds,n=this.changes,r=this.typeName;if(1===n.length){var o=G(n,1)[0];return{typeName:r,changedIds:t,assembly:e,firstTranscript:o.firstTranscript,secondTranscript:o.secondTranscript,parentFeatureId:o.parentFeatureId}}return{typeName:r,changedIds:t,assembly:e,changes:n}}},{key:"mergeTranscriptsOnServer",value:function(e,t){e.min=Math.min(e.min,t.min),e.max=Math.max(e.max,t.max);var n=e.attributes?JSON.parse(JSON.stringify(e.attributes)):{};if(t.attributes&&(Object.keys(n).includes("merged_with")||(n.merged_with=[]),n.merged_with.push(Lt(Mt(t.attributes)))),e.attributes=n,t.children)for(var r=0,o=Object.entries(t.children);r<o.length;r++){var i=G(o[r],2);this.mergeFeatureIntoTranscriptOnServer(i[1],e)}}},{key:"mergeFeatureIntoTranscriptOnServer",value:function(e,t){var n=this;t.children||(t.children=new Map);var r,i,a,s=!1,l=j(t.children);try{for(l.s();!(a=l.n()).done;){var c=G(a.value,2)[1];if(s&&r?i=!0:(i=!1,r=c),r.type===e.type&&r.type===c.type&&o.doesIntersect2(e.min,e.max,r.min,r.max)&&o.doesIntersect2(c.min,c.max,r.min,r.max)){r.min=Math.min(e.min,r.min,c.min),r.max=Math.max(e.max,r.max,c.max),r.attributes||(r.attributes={});var u=JSON.parse(JSON.stringify(r.attributes));Object.keys(u).includes("merged_with")||(u.merged_with=[]);var d=u.merged_with;if(d.push(Lt(Mt(e.attributes))),i){var f=c.attributes?JSON.parse(JSON.stringify(c.attributes)):void 0;d.push(Lt(f)),t.children.delete(c._id.toString())}u.merged_with=W(new Set(d)),r.attributes=u,s=!0}}}catch(e){l.e(e)}finally{l.f()}s&&r&&e.children&&Object.entries(e.children).map((function(e){var t=G(e,2);n.addChild(r,t[1])})),this.addChild(t,s&&r?r:e)}},{key:"mergeTranscriptsOnClient",value:function(e,t){var n,r;e.setMin(Math.min(e.min,t.min)),e.setMax(Math.max(e.max,t.max));var o=null!==(n=null===(r=e.attributes.get("merged_with"))||void 0===r?void 0:r.slice())&&void 0!==n?n:[],i=Lt(Mt(t.attributes));if(o.includes(i)||o.push(i),e.setAttribute("merged_with",o),t.children)for(var a=0,s=Object.entries(t.children);a<s.length;a++){var l=G(s[a],2);this.mergeFeatureIntoTranscriptOnClient(l[1],e)}}},{key:"mergeFeatureIntoTranscriptOnClient",value:function(e,t){t.children||(t.children=new Map);var n,r,i,a=!1,s=j(t.children);try{for(s.s();!(i=s.n()).done;){var c=G(i.value,2)[1];if(a&&n?r=!0:(r=!1,n=c),n.type===e.type&&n.type===c.type&&o.doesIntersect2(e.min,e.max,n.min,n.max)&&o.doesIntersect2(c.min,c.max,n.min,n.max)){var u,d;n.setMin(Math.min(e.min,n.min,c.min)),n.setMax(Math.max(e.max,n.max,c.max));var f=null!==(u=null===(d=n.attributes.get("merged_with"))||void 0===d?void 0:d.slice())&&void 0!==u?u:[];f.push(Lt(Mt(e.attributes))),r&&(f.push(Lt(l.getSnapshot(c).attributes)),t.deleteChild(c._id)),n.setAttribute("merged_with",W(new Set(f))),a=!0}}}catch(e){s.e(e)}finally{s.f()}a&&n&&e.children&&Object.entries(e.children).map((function(e){var t=G(e,2);n.addChild(t[1])})),t.addChild(a&&n?l.getSnapshot(n):e)}},{key:"getInverse",value:function(){var e,t=this.assembly,n=this.changes,r=this.logger,o=W(this.changedIds).reverse(),i=W(n).reverse().map((function(e){return{transcriptsToRestore:[e.firstTranscript,e.secondTranscript],parentFeatureId:e.parentFeatureId}}));return null===(e=r.debug)||void 0===e||e.call(r,"INVERSE CHANGE 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Pt({changedIds:r,typeName:"MergeTranscriptsChange",changes:o,assembly:e},{logger:n})}}])}(ft),qt=function(e){function t(e,n){var r;return R(this,t),D(r=T(this,t,[e,n]),"typeName","SplitExonChange"),D(r,"changes",void 0),r.changes="changes"in e?e.changes:[e],r}return M(t,e),I(t,[{key:"notification",get:function(){return"Exon successfully split"}},{key:"toJSON",value:function(){var e=this.assembly,t=this.changedIds,n=this.changes,r=this.typeName;if(1===n.length){var o=G(n,1)[0];return{typeName:r,changedIds:t,assembly:e,exonToBeSplit:o.exonToBeSplit,parentFeatureId:o.parentFeatureId,upstreamCut:o.upstreamCut,downstreamCut:o.downstreamCut,leftExonId:o.leftExonId,rightExonId:o.rightExonId}}return{typeName:r,changedIds:t,assembly:e,changes:n}}},{key:"getInverse",value:function(){var e,t=this.assembly,n=this.changes,r=this.logger,o=W(this.changedIds).reverse(),i=W(n).reverse().map((function(e){return{exonToRestore:e.exonToBeSplit,parentFeatureId:e.parentFeatureId,idsToDelete:[e.leftExonId,e.rightExonId],upstreamCut:e.upstreamCut,downstreamCut:e.downstreamCut,leftExonId:e.leftExonId,rightExonId:e.rightExonId}}));return null===(e=r.debug)||void 0===e||e.call(r,"INVERSE CHANGE '".concat(JSON.stringify(i),"'")),new Ut({changedIds:o,typeName:"UndoSplitExonChange",changes:i,assembly:t},{logger:r})}},{key:"makeSplitExons",value:function(e,t,n,r,o){var i=JSON.parse(JSON.stringify(e));delete i.attributes._id,delete i.attributes.gff_id;var a=structuredClone(i);a._id=r,a.max=t;var s=structuredClone(i);return s.min=n,s._id=o,[a,s]}}])}(ft),Ut=function(e){function t(e,n){var r;return R(this,t),D(r=T(this,t,[e,n]),"typeName","UndoSplitExonChange"),D(r,"changes",void 0),r.changes="changes"in e?e.changes:[e],r}return M(t,e),I(t,[{key:"toJSON",value:function(){var e=this.assembly,t=this.changedIds,n=this.changes,r=this.typeName;if(1===n.length){var o=G(n,1)[0];return{typeName:r,changedIds:t,assembly:e,exonToRestore:o.exonToRestore,parentFeatureId:o.parentFeatureId,idsToDelete:o.idsToDelete,upstreamCut:o.upstreamCut,downstreamCut:o.downstreamCut,leftExonId:o.leftExonId,rightExonId:o.rightExonId}}return{typeName:r,changedIds:t,assembly:e,changes:n}}},{key:"getInverse",value:function(){var e=this.assembly,t=this.changes,n=this.logger,r=W(this.changedIds).reverse(),o=W(t).reverse().map((function(e){return{parentFeatureId:e.parentFeatureId,exonToBeSplit:e.exonToRestore,upstreamCut:e.upstreamCut,downstreamCut:e.downstreamCut,leftExonId:e.leftExonId,rightExonId:e.rightExonId}}));return new qt({changedIds:r,typeName:"SplitExonChange",changes:o,assembly:e},{logger:n})}}])}(ft),$t=function(e){function t(e,n){var r;return R(this,t),D(r=T(this,t,[e,n]),"typeName","StrandChange"),D(r,"changes",void 0),r.changes="changes"in e?e.changes:[e],r}return M(t,e),I(t,[{key:"toJSON",value:function(){var e=this.assembly,t=this.changedIds,n=this.changes,r=this.typeName;if(1===n.length){var o=G(n,1)[0];return{typeName:r,changedIds:t,assembly:e,featureId:o.featureId,oldStrand:o.oldStrand,newStrand:o.newStrand}}return{typeName:r,changedIds:t,assembly:e,changes:n}}},{key:"getInverse",value:function(){var e=this.assembly,n=this.changes,r=this.logger,o=this.typeName;return new t({changedIds:W(this.changedIds).reverse(),typeName:o,changes:W(n).reverse().map((function(e){return{featureId:e.featureId,oldStrand:e.newStrand,newStrand:e.oldStrand}})),assembly:e},{logger:r})}}])}(ft),zt=function(e){function t(e,n){var r;return R(this,t),D(r=T(this,t,[e,n]),"typeName","TypeChange"),D(r,"changes",void 0),r.changes="changes"in e?e.changes:[e],r}return M(t,e),I(t,[{key:"toJSON",value:function(){var e=this.assembly,t=this.changedIds,n=this.changes,r=this.typeName;if(1===n.length){var o=G(n,1)[0];return{typeName:r,changedIds:t,assembly:e,featureId:o.featureId,oldType:o.oldType,newType:o.newType}}return{typeName:r,changedIds:t,assembly:e,changes:n}}},{key:"getInverse",value:function(){var e=this.assembly,n=this.changes,r=this.logger,o=this.typeName;return new t({changedIds:W(this.changedIds).reverse(),typeName:o,changes:W(n).reverse().map((function(e){return{featureId:e.featureId,oldType:e.newType,newType:e.oldType}})),assembly:e},{logger:r})}}])}(ft),Ht=function(e){function t(e,n){var r;return R(this,t),D(r=T(this,t,[e,n]),"typeName","UserChange"),D(r,"changes",void 0),D(r,"userId",void 0),r.changes="changes"in e?e.changes:[e],r.userId=e.userId,r}return M(t,e),I(t,[{key:"toJSON",value:function(){var e=this.changes,t=this.typeName,n=this.userId;return 1===e.length?{typeName:t,userId:n,role:G(e,1)[0].role}:{typeName:t,userId:n,changes:e}}},{key:"getInverse",value:function(){return new t({typeName:this.typeName,changes:this.changes,userId:this.userId},{logger:this.logger})}}])}(ct),Gt=B(B({},{AddFeatureChange:ht,DeleteFeatureChange:pt,FeatureAttributeChange:St,LocationEndChange:Tt,LocationStartChange:Et,MergeExonsChange:jt,SplitExonChange:qt,MergeTranscriptsChange:Pt,UndoMergeExonsChange:Dt,UndoSplitExonChange:Ut,UndoMergeTranscriptsChange:Bt,StrandChange:$t,TypeChange:zt}),{},{AddAssemblyAndFeaturesFromFileChange:mt,AddAssemblyFromFileChange:_t,AddAssemblyFromExternalChange:yt,AddFeaturesFromFileChange:vt,DeleteAssemblyChange:xt,DeleteUserChange:wt,ImportJBrowseConfigChange:Nt,UserChange:Ht,AddRefSeqAliasesChange:bt,AddAssemblyAliasesChange:gt}),Vt=function(){return I((function e(){R(this,e)}),[{key:"frontendPreValidate",value:(o=k(U().m((function e(t){return U().w((function(e){for(;;)if(0===e.n)return e.a(2,{validationName:this.name})}),e,this)}))),function(e){return o.apply(this,arguments)})},{key:"frontendPostValidate",value:(r=k(U().m((function e(t){return 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location&&"https:"===location.protocol,r.hostname&&!r.port&&(r.port=n.secure?"443":"80"),n.hostname=r.hostname||("undefined"!=typeof location?location.hostname:"localhost"),n.port=r.port||("undefined"!=typeof location&&location.port?location.port:n.secure?"443":"80"),n.transports=r.transports||["polling","websocket","webtransport"],n.writeBuffer=[],n.prevBufferLen=0,n.opts=Object.assign({path:"/engine.io",agent:!1,withCredentials:!1,upgrade:!0,timestampParam:"t",rememberUpgrade:!1,addTrailingSlash:!0,rejectUnauthorized:!0,perMessageDeflate:{threshold:1024},transportOptions:{},closeOnBeforeunload:!1},r),n.opts.path=n.opts.path.replace(/\/$/,"")+(n.opts.addTrailingSlash?"/":""),"string"==typeof n.opts.query&&(n.opts.query=function(e){for(var t={},n=e.split("&"),r=0,o=n.length;r<o;r++){var i=n[r].split("=");t[decodeURIComponent(i[0])]=decodeURIComponent(i[1])}return t}(n.opts.query)),n.id=null,n.upgrades=null,n.pingInterval=null,n.pingTimeout=null,n.pingTimeoutTimer=null,"function"==typeof addEventListener&&(n.opts.closeOnBeforeunload&&(n.beforeunloadEventListener=function(){n.transport&&(n.transport.removeAllListeners(),n.transport.close())},addEventListener("beforeunload",n.beforeunloadEventListener,!1)),"localhost"!==n.hostname&&(n.offlineEventListener=function(){n.onClose("transport close",{description:"network connection lost"})},addEventListener("offline",n.offlineEventListener,!1))),n.open(),n}return M(t,e),I(t,[{key:"createTransport",value:function(e){var t=Object.assign({},this.opts.query);t.EIO=4,t.transport=e,this.id&&(t.sid=this.id);var n=Object.assign({},this.opts,{query:t,socket:this,hostname:this.hostname,secure:this.secure,port:this.port},this.opts.transportOptions[e]);return new jr[e](n)}},{key:"open",value:function(){var e,n=this;if(this.opts.rememberUpgrade&&t.priorWebsocketSuccess&&-1!==this.transports.indexOf("websocket"))e="websocket";else{if(0===this.transports.length)return void this.setTimeoutFn((function(){n.emitReserved("error","No transports available")}),0);e=this.transports[0]}this.readyState="opening";try{e=this.createTransport(e)}catch(e){return this.transports.shift(),void this.open()}e.open(),this.setTransport(e)}},{key:"setTransport",value:function(e){var t=this;this.transport&&this.transport.removeAllListeners(),this.transport=e,e.on("drain",this.onDrain.bind(this)).on("packet",this.onPacket.bind(this)).on("error",this.onError.bind(this)).on("close",(function(e){return t.onClose("transport close",e)}))}},{key:"probe",value:function(e){var n=this,r=this.createTransport(e),o=!1;t.priorWebsocketSuccess=!1;var i=function(){o||(r.send([{type:"ping",data:"probe"}]),r.once("packet",(function(e){if(!o)if("pong"===e.type&&"probe"===e.data){if(n.upgrading=!0,n.emitReserved("upgrading",r),!r)return;t.priorWebsocketSuccess="websocket"===r.name,n.transport.pause((function(){o||"closed"!==n.readyState&&(d(),n.setTransport(r),r.send([{type:"upgrade"}]),n.emitReserved("upgrade",r),r=null,n.upgrading=!1,n.flush())}))}else{var i=new Error("probe error");i.transport=r.name,n.emitReserved("upgradeError",i)}})))};function a(){o||(o=!0,d(),r.close(),r=null)}var s=function(e){var t=new Error("probe error: "+e);t.transport=r.name,a(),n.emitReserved("upgradeError",t)};function l(){s("transport closed")}function c(){s("socket closed")}function u(e){r&&e.name!==r.name&&a()}var d=function(){r.removeListener("open",i),r.removeListener("error",s),r.removeListener("close",l),n.off("close",c),n.off("upgrading",u)};r.once("open",i),r.once("error",s),r.once("close",l),this.once("close",c),this.once("upgrading",u),-1!==this.upgrades.indexOf("webtransport")&&"webtransport"!==e?this.setTimeoutFn((function(){o||r.open()}),200):r.open()}},{key:"onOpen",value:function(){if(this.readyState="open",t.priorWebsocketSuccess="websocket"===this.transport.name,this.emitReserved("open"),this.flush(),"open"===this.readyState&&this.opts.upgrade)for(var e=0,n=this.upgrades.length;e<n;e++)this.probe(this.upgrades[e])}},{key:"onPacket",value:function(e){if("opening"===this.readyState||"open"===this.readyState||"closing"===this.readyState)switch(this.emitReserved("packet",e),this.emitReserved("heartbeat"),this.resetPingTimeout(),e.type){case"open":this.onHandshake(JSON.parse(e.data));break;case"ping":this.sendPacket("pong"),this.emitReserved("ping"),this.emitReserved("pong");break;case"error":var t=new Error("server error");t.code=e.data,this.onError(t);break;case"message":this.emitReserved("data",e.data),this.emitReserved("message",e.data)}}},{key:"onHandshake",value:function(e){this.emitReserved("handshake",e),this.id=e.sid,this.transport.query.sid=e.sid,this.upgrades=this.filterUpgrades(e.upgrades),this.pingInterval=e.pingInterval,this.pingTimeout=e.pingTimeout,this.maxPayload=e.maxPayload,this.onOpen(),"closed"!==this.readyState&&this.resetPingTimeout()}},{key:"resetPingTimeout",value:function(){var e=this;this.clearTimeoutFn(this.pingTimeoutTimer),this.pingTimeoutTimer=this.setTimeoutFn((function(){e.onClose("ping timeout")}),this.pingInterval+this.pingTimeout),this.opts.autoUnref&&this.pingTimeoutTimer.unref()}},{key:"onDrain",value:function(){this.writeBuffer.splice(0,this.prevBufferLen),this.prevBufferLen=0,0===this.writeBuffer.length?this.emitReserved("drain"):this.flush()}},{key:"flush",value:function(){if("closed"!==this.readyState&&this.transport.writable&&!this.upgrading&&this.writeBuffer.length){var e=this.getWritablePackets();this.transport.send(e),this.prevBufferLen=e.length,this.emitReserved("flush")}}},{key:"getWritablePackets",value:function(){if(!(this.maxPayload&&"polling"===this.transport.name&&this.writeBuffer.length>1))return this.writeBuffer;for(var e,t=1,n=0;n<this.writeBuffer.length;n++){var r=this.writeBuffer[n].data;if(r&&(t+="string"==typeof(e=r)?function(e){for(var t=0,n=0,r=0,o=e.length;r<o;r++)(t=e.charCodeAt(r))<128?n+=1:t<2048?n+=2:t<55296||t>=57344?n+=3:(r++,n+=4);return n}(e):Math.ceil(1.33*(e.byteLength||e.size))),n>0&&t>this.maxPayload)return this.writeBuffer.slice(0,n);t+=2}return this.writeBuffer}},{key:"write",value:function(e,t,n){return this.sendPacket("message",e,t,n),this}},{key:"send",value:function(e,t,n){return this.sendPacket("message",e,t,n),this}},{key:"sendPacket",value:function(e,t,n,r){if("function"==typeof t&&(r=t,t=void 0),"function"==typeof n&&(r=n,n=null),"closing"!==this.readyState&&"closed"!==this.readyState){(n=n||{}).compress=!1!==n.compress;var o={type:e,data:t,options:n};this.emitReserved("packetCreate",o),this.writeBuffer.push(o),r&&this.once("flush",r),this.flush()}}},{key:"close",value:function(){var e=this,t=function(){e.onClose("forced close"),e.transport.close()},n=function(){e.off("upgrade",n),e.off("upgradeError",n),t()},r=function(){e.once("upgrade",n),e.once("upgradeError",n)};return"opening"!==this.readyState&&"open"!==this.readyState||(this.readyState="closing",this.writeBuffer.length?this.once("drain",(function(){e.upgrading?r():t()})):this.upgrading?r():t()),this}},{key:"onError",value:function(e){t.priorWebsocketSuccess=!1,this.emitReserved("error",e),this.onClose("transport error",e)}},{key:"onClose",value:function(e,t){"opening"!==this.readyState&&"open"!==this.readyState&&"closing"!==this.readyState||(this.clearTimeoutFn(this.pingTimeoutTimer),this.transport.removeAllListeners("close"),this.transport.close(),this.transport.removeAllListeners(),"function"==typeof removeEventListener&&(removeEventListener("beforeunload",this.beforeunloadEventListener,!1),removeEventListener("offline",this.offlineEventListener,!1)),this.readyState="closed",this.id=null,this.emitReserved("close",e,t),this.writeBuffer=[],this.prevBufferLen=0)}},{key:"filterUpgrades",value:function(e){for(var t=[],n=0,r=e.length;n<r;n++)~this.transports.indexOf(e[n])&&t.push(e[n]);return t}}])}(ir);Mr.protocol=4;var Lr="function"==typeof ArrayBuffer,Pr=function(e){return"function"==typeof ArrayBuffer.isView?ArrayBuffer.isView(e):e.buffer instanceof ArrayBuffer},Br=Object.prototype.toString,qr="function"==typeof Blob||"undefined"!=typeof Blob&&"[object BlobConstructor]"===Br.call(Blob),Ur="function"==typeof File||"undefined"!=typeof File&&"[object FileConstructor]"===Br.call(File);function $r(e){return Lr&&(e instanceof ArrayBuffer||Pr(e))||qr&&e instanceof Blob||Ur&&e instanceof File}function zr(e,t){if(!e||"object"!==K(e))return!1;if(Array.isArray(e)){for(var n=0,r=e.length;n<r;n++)if(zr(e[n]))return!0;return!1}if($r(e))return!0;if(e.toJSON&&"function"==typeof e.toJSON&&1===arguments.length)return zr(e.toJSON(),!0);for(var o in e)if(Object.prototype.hasOwnProperty.call(e,o)&&zr(e[o]))return!0;return!1}function Hr(e){var t=[],n=e;return n.data=Gr(e.data,t),n.attachments=t.length,{packet:n,buffers:t}}function Gr(e,t){if(!e)return e;if($r(e)){var n={_placeholder:!0,num:t.length};return t.push(e),n}if(Array.isArray(e)){for(var r=new Array(e.length),o=0;o<e.length;o++)r[o]=Gr(e[o],t);return r}if("object"===K(e)&&!(e instanceof Date)){var i={};for(var a in e)Object.prototype.hasOwnProperty.call(e,a)&&(i[a]=Gr(e[a],t));return i}return e}function Vr(e,t){return e.data=Wr(e.data,t),delete e.attachments,e}function Wr(e,t){if(!e)return e;if(e&&!0===e._placeholder){if("number"==typeof e.num&&e.num>=0&&e.num<t.length)return t[e.num];throw new Error("illegal attachments")}if(Array.isArray(e))for(var n=0;n<e.length;n++)e[n]=Wr(e[n],t);else if("object"===K(e))for(var r in e)Object.prototype.hasOwnProperty.call(e,r)&&(e[r]=Wr(e[r],t));return e}var Jr,Kr=["connect","connect_error","disconnect","disconnecting","newListener","removeListener"];!function(e){e[e.CONNECT=0]="CONNECT",e[e.DISCONNECT=1]="DISCONNECT",e[e.EVENT=2]="EVENT",e[e.ACK=3]="ACK",e[e.CONNECT_ERROR=4]="CONNECT_ERROR",e[e.BINARY_EVENT=5]="BINARY_EVENT",e[e.BINARY_ACK=6]="BINARY_ACK"}(Jr||(Jr={}));var Yr=function(){return I((function e(t){R(this,e),this.replacer=t}),[{key:"encode",value:function(e){return e.type!==Jr.EVENT&&e.type!==Jr.ACK||!zr(e)?[this.encodeAsString(e)]:this.encodeAsBinary({type:e.type===Jr.EVENT?Jr.BINARY_EVENT:Jr.BINARY_ACK,nsp:e.nsp,data:e.data,id:e.id})}},{key:"encodeAsString",value:function(e){var t=""+e.type;return e.type!==Jr.BINARY_EVENT&&e.type!==Jr.BINARY_ACK||(t+=e.attachments+"-"),e.nsp&&"/"!==e.nsp&&(t+=e.nsp+","),null!=e.id&&(t+=e.id),null!=e.data&&(t+=JSON.stringify(e.data,this.replacer)),t}},{key:"encodeAsBinary",value:function(e){var t=Hr(e),n=this.encodeAsString(t.packet),r=t.buffers;return r.unshift(n),r}}])}();function Xr(e){return"[object Object]"===Object.prototype.toString.call(e)}var Zr=function(e){function t(e){var n;return R(this,t),(n=T(this,t)).reviver=e,n}return M(t,e),I(t,[{key:"add",value:function(e){var n;if("string"==typeof e){if(this.reconstructor)throw new Error("got plaintext data when reconstructing a packet");var r=(n=this.decodeString(e)).type===Jr.BINARY_EVENT;r||n.type===Jr.BINARY_ACK?(n.type=r?Jr.EVENT:Jr.ACK,this.reconstructor=new Qr(n),0===n.attachments&&V(t,"emitReserved",this,3)(["decoded",n])):V(t,"emitReserved",this,3)(["decoded",n])}else{if(!$r(e)&&!e.base64)throw new Error("Unknown type: "+e);if(!this.reconstructor)throw new Error("got binary data when not reconstructing a packet");(n=this.reconstructor.takeBinaryData(e))&&(this.reconstructor=null,V(t,"emitReserved",this,3)(["decoded",n]))}}},{key:"decodeString",value:function(e){var n=0,r={type:Number(e.charAt(0))};if(void 0===Jr[r.type])throw new Error("unknown packet type "+r.type);if(r.type===Jr.BINARY_EVENT||r.type===Jr.BINARY_ACK){for(var o=n+1;"-"!==e.charAt(++n)&&n!=e.length;);var i=e.substring(o,n);if(i!=Number(i)||"-"!==e.charAt(n))throw new Error("Illegal attachments");r.attachments=Number(i)}if("/"===e.charAt(n+1)){for(var a=n+1;++n&&","!==e.charAt(n)&&n!==e.length;);r.nsp=e.substring(a,n)}else r.nsp="/";var s=e.charAt(n+1);if(""!==s&&Number(s)==s){for(var l=n+1;++n;){var c=e.charAt(n);if(null==c||Number(c)!=c){--n;break}if(n===e.length)break}r.id=Number(e.substring(l,n+1))}if(e.charAt(++n)){var u=this.tryParse(e.substr(n));if(!t.isPayloadValid(r.type,u))throw new Error("invalid payload");r.data=u}return r}},{key:"tryParse",value:function(e){try{return JSON.parse(e,this.reviver)}catch(e){return!1}}},{key:"destroy",value:function(){this.reconstructor&&(this.reconstructor.finishedReconstruction(),this.reconstructor=null)}}],[{key:"isPayloadValid",value:function(e,t){switch(e){case Jr.CONNECT:return Xr(t);case Jr.DISCONNECT:return void 0===t;case Jr.CONNECT_ERROR:return"string"==typeof t||Xr(t);case Jr.EVENT:case Jr.BINARY_EVENT:return Array.isArray(t)&&("number"==typeof t[0]||"string"==typeof t[0]&&-1===Kr.indexOf(t[0]));case Jr.ACK:case Jr.BINARY_ACK:return Array.isArray(t)}}}])}(ir),Qr=function(){return I((function e(t){R(this,e),this.packet=t,this.buffers=[],this.reconPack=t}),[{key:"takeBinaryData",value:function(e){if(this.buffers.push(e),this.buffers.length===this.reconPack.attachments){var t=Vr(this.reconPack,this.buffers);return this.finishedReconstruction(),t}return null}},{key:"finishedReconstruction",value:function(){this.reconPack=null,this.buffers=[]}}])}(),eo={__proto__:null,Decoder:Zr,Encoder:Yr,get PacketType(){return Jr}};function to(e,t,n){return e.on(t,n),function(){e.off(t,n)}}var no=Object.freeze({connect:1,connect_error:1,disconnect:1,disconnecting:1,newListener:1,removeListener:1}),ro=function(e){function t(e,n,r){var o;return R(this,t),(o=T(this,t)).connected=!1,o.recovered=!1,o.receiveBuffer=[],o.sendBuffer=[],o._queue=[],o._queueSeq=0,o.ids=0,o.acks={},o.flags={},o.io=e,o.nsp=n,r&&r.auth&&(o.auth=r.auth),o._opts=Object.assign({},r),o.io._autoConnect&&o.open(),o}return M(t,e),I(t,[{key:"disconnected",get:function(){return!this.connected}},{key:"subEvents",value:function(){if(!this.subs){var e=this.io;this.subs=[to(e,"open",this.onopen.bind(this)),to(e,"packet",this.onpacket.bind(this)),to(e,"error",this.onerror.bind(this)),to(e,"close",this.onclose.bind(this))]}}},{key:"active",get:function(){return!!this.subs}},{key:"connect",value:function(){return this.connected||(this.subEvents(),this.io._reconnecting||this.io.open(),"open"===this.io._readyState&&this.onopen()),this}},{key:"open",value:function(){return this.connect()}},{key:"send",value:function(){for(var e=arguments.length,t=new Array(e),n=0;n<e;n++)t[n]=arguments[n];return t.unshift("message"),this.emit.apply(this,t),this}},{key:"emit",value:function(e){if(no.hasOwnProperty(e))throw new Error('"'+e.toString()+'" is a reserved event name');for(var t=arguments.length,n=new Array(t>1?t-1:0),r=1;r<t;r++)n[r-1]=arguments[r];if(n.unshift(e),this._opts.retries&&!this.flags.fromQueue&&!this.flags.volatile)return this._addToQueue(n),this;var o={type:Jr.EVENT,data:n,options:{}};if(o.options.compress=!1!==this.flags.compress,"function"==typeof n[n.length-1]){var i=this.ids++,a=n.pop();this._registerAckCallback(i,a),o.id=i}return this.flags.volatile&&(!(this.io.engine&&this.io.engine.transport&&this.io.engine.transport.writable)||!this.connected)||(this.connected?(this.notifyOutgoingListeners(o),this.packet(o)):this.sendBuffer.push(o)),this.flags={},this}},{key:"_registerAckCallback",value:function(e,t){var n,r=this,o=null!==(n=this.flags.timeout)&&void 0!==n?n:this._opts.ackTimeout;if(void 0!==o){var i=this.io.setTimeoutFn((function(){delete r.acks[e];for(var n=0;n<r.sendBuffer.length;n++)r.sendBuffer[n].id===e&&r.sendBuffer.splice(n,1);t.call(r,new Error("operation has timed out"))}),o);this.acks[e]=function(){r.io.clearTimeoutFn(i);for(var e=arguments.length,n=new Array(e),o=0;o<e;o++)n[o]=arguments[o];t.apply(r,[null].concat(n))}}else this.acks[e]=t}},{key:"emitWithAck",value:function(e){for(var t=this,n=arguments.length,r=new Array(n>1?n-1:0),o=1;o<n;o++)r[o-1]=arguments[o];var i=void 0!==this.flags.timeout||void 0!==this._opts.ackTimeout;return new Promise((function(n,o){r.push((function(e,t){return i?e?o(e):n(t):n(e)})),t.emit.apply(t,[e].concat(r))}))}},{key:"_addToQueue",value:function(e){var t,n=this;"function"==typeof e[e.length-1]&&(t=e.pop());var r={id:this._queueSeq++,tryCount:0,pending:!1,args:e,flags:Object.assign({fromQueue:!0},this.flags)};e.push((function(e){if(r===n._queue[0]){if(null!==e)r.tryCount>n._opts.retries&&(n._queue.shift(),t&&t(e));else if(n._queue.shift(),t){for(var o=arguments.length,i=new Array(o>1?o-1:0),a=1;a<o;a++)i[a-1]=arguments[a];t.apply(void 0,[null].concat(i))}return r.pending=!1,n._drainQueue()}})),this._queue.push(r),this._drainQueue()}},{key:"_drainQueue",value:function(){if(this.connected&&0!==this._queue.length){var e=this._queue[0];e.pending&&!(arguments.length>0&&void 0!==arguments[0]&&arguments[0])||(e.pending=!0,e.tryCount++,this.flags=e.flags,this.emit.apply(this,e.args))}}},{key:"packet",value:function(e){e.nsp=this.nsp,this.io._packet(e)}},{key:"onopen",value:function(){var e=this;"function"==typeof this.auth?this.auth((function(t){e._sendConnectPacket(t)})):this._sendConnectPacket(this.auth)}},{key:"_sendConnectPacket",value:function(e){this.packet({type:Jr.CONNECT,data:this._pid?Object.assign({pid:this._pid,offset:this._lastOffset},e):e})}},{key:"onerror",value:function(e){this.connected||this.emitReserved("connect_error",e)}},{key:"onclose",value:function(e,t){this.connected=!1,delete this.id,this.emitReserved("disconnect",e,t)}},{key:"onpacket",value:function(e){if(e.nsp===this.nsp)switch(e.type){case Jr.CONNECT:e.data&&e.data.sid?this.onconnect(e.data.sid,e.data.pid):this.emitReserved("connect_error",new Error("It seems you are trying to reach a Socket.IO server in v2.x with a v3.x client, but they are not compatible (more information here: https://socket.io/docs/v3/migrating-from-2-x-to-3-0/)"));break;case Jr.EVENT:case Jr.BINARY_EVENT:this.onevent(e);break;case Jr.ACK:case Jr.BINARY_ACK:this.onack(e);break;case Jr.DISCONNECT:this.ondisconnect();break;case Jr.CONNECT_ERROR:this.destroy();var t=new Error(e.data.message);t.data=e.data.data,this.emitReserved("connect_error",t)}}},{key:"onevent",value:function(e){var t=e.data||[];null!=e.id&&t.push(this.ack(e.id)),this.connected?this.emitEvent(t):this.receiveBuffer.push(Object.freeze(t))}},{key:"emitEvent",value:function(e){if(this._anyListeners&&this._anyListeners.length){var n,r=j(this._anyListeners.slice());try{for(r.s();!(n=r.n()).done;)n.value.apply(this,e)}catch(e){r.e(e)}finally{r.f()}}V(t,"emit",this,1).apply(this,e),this._pid&&e.length&&"string"==typeof e[e.length-1]&&(this._lastOffset=e[e.length-1])}},{key:"ack",value:function(e){var t=this,n=!1;return function(){if(!n){n=!0;for(var r=arguments.length,o=new Array(r),i=0;i<r;i++)o[i]=arguments[i];t.packet({type:Jr.ACK,id:e,data:o})}}}},{key:"onack",value:function(e){var t=this.acks[e.id];"function"==typeof t&&(t.apply(this,e.data),delete this.acks[e.id])}},{key:"onconnect",value:function(e,t){this.id=e,this.recovered=t&&this._pid===t,this._pid=t,this.connected=!0,this.emitBuffered(),this.emitReserved("connect"),this._drainQueue(!0)}},{key:"emitBuffered",value:function(){var e=this;this.receiveBuffer.forEach((function(t){return e.emitEvent(t)})),this.receiveBuffer=[],this.sendBuffer.forEach((function(t){e.notifyOutgoingListeners(t),e.packet(t)})),this.sendBuffer=[]}},{key:"ondisconnect",value:function(){this.destroy(),this.onclose("io server disconnect")}},{key:"destroy",value:function(){this.subs&&(this.subs.forEach((function(e){return e()})),this.subs=void 0),this.io._destroy(this)}},{key:"disconnect",value:function(){return this.connected&&this.packet({type:Jr.DISCONNECT}),this.destroy(),this.connected&&this.onclose("io client disconnect"),this}},{key:"close",value:function(){return this.disconnect()}},{key:"compress",value:function(e){return this.flags.compress=e,this}},{key:"volatile",get:function(){return this.flags.volatile=!0,this}},{key:"timeout",value:function(e){return this.flags.timeout=e,this}},{key:"onAny",value:function(e){return this._anyListeners=this._anyListeners||[],this._anyListeners.push(e),this}},{key:"prependAny",value:function(e){return this._anyListeners=this._anyListeners||[],this._anyListeners.unshift(e),this}},{key:"offAny",value:function(e){if(!this._anyListeners)return this;if(e){for(var t=this._anyListeners,n=0;n<t.length;n++)if(e===t[n])return t.splice(n,1),this}else this._anyListeners=[];return this}},{key:"listenersAny",value:function(){return this._anyListeners||[]}},{key:"onAnyOutgoing",value:function(e){return this._anyOutgoingListeners=this._anyOutgoingListeners||[],this._anyOutgoingListeners.push(e),this}},{key:"prependAnyOutgoing",value:function(e){return this._anyOutgoingListeners=this._anyOutgoingListeners||[],this._anyOutgoingListeners.unshift(e),this}},{key:"offAnyOutgoing",value:function(e){if(!this._anyOutgoingListeners)return this;if(e){for(var 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34:this.$=a[l]}},table:[{3:1,4:[1,2],6:3,13:4,15:[1,5],16:[1,6],17:[1,7],18:[1,8],19:[1,9]},{1:[3]},{1:[2,1],5:10,7:11,8:12,9:13,10:14,11:15,12:[1,18],14:[1,19],20:16,21:17,22:[1,20]},{1:[2,3],5:21,7:11,8:12,9:13,10:14,11:15,12:[1,18],14:[1,19],20:16,21:17,22:[1,20]},{1:[2,12],12:[2,12],14:[2,12],22:[2,12]},{1:[2,14],12:[2,14],14:[2,14],22:[2,14]},{1:[2,15],12:[2,15],14:[2,15],22:[2,15]},{1:[2,16],12:[2,16],14:[2,16],22:[2,16]},{1:[2,17],12:[2,17],14:[2,17],22:[2,17]},{1:[2,18],12:[2,18],14:[2,18],22:[2,18]},{1:[2,2],7:22,8:12,9:13,10:14,11:15,12:[1,18],14:[1,19],20:16,21:17,22:[1,20]},{1:[2,5],12:[2,5],14:[2,5],22:[2,5]},{1:[2,7],12:[2,7],14:[2,7],22:[2,7]},{1:[2,8],12:[2,8],14:[2,8],22:[2,8]},{1:[2,9],12:[2,9],14:[2,9],22:[2,9]},{1:[2,10],12:[2,10],14:[2,10],22:[2,10]},{1:[2,19],12:[2,19],14:[2,19],22:[2,19]},{1:[2,20],12:[2,20],14:[2,20],22:[2,20]},{13:23,15:[1,5],16:[1,6],17:[1,7],18:[1,8],19:[1,9]},{13:24,15:[1,5],16:[1,6],17:[1,7],18:[1,8],19:[1,9],22:[1,25]},{15:[1,29],17:[1,30],18:[1,33],23:26,25:27,26:28,27:32,29:34,30:[1,35],31:[1,31],32:[1,36],33:[1,37]},{1:[2,4],7:22,8:12,9:13,10:14,11:15,12:[1,18],14:[1,19],20:16,21:17,22:[1,20]},{1:[2,6],12:[2,6],14:[2,6],22:[2,6]},{1:[2,11],12:[2,11],14:[2,11],22:[2,11]},{1:[2,13],12:[2,13],14:[2,13],22:[2,13]},{15:[1,29],17:[1,30],18:[1,33],23:38,25:27,26:28,27:32,29:34,30:[1,35],31:[1,31],32:[1,36],33:[1,37]},{24:[1,39]},{24:[2,23]},{24:[2,24],28:[1,40]},{24:[2,30]},{24:[2,31]},{24:[2,32]},{24:[2,25],28:[2,25]},{24:[2,27],28:[2,27]},{24:[2,28],28:[2,28]},{24:[2,29],28:[2,29]},{24:[2,33],28:[2,33]},{24:[2,34],28:[2,34]},{24:[1,41]},{1:[2,21],12:[2,21],14:[2,21],22:[2,21]},{18:[1,33],27:42,29:34,30:[1,35],32:[1,36],33:[1,37]},{1:[2,22],12:[2,22],14:[2,22],22:[2,22]},{24:[2,26],28:[2,26]}],defaultActions:{27:[2,23],29:[2,30],30:[2,31],31:[2,32]},parseError:function(e,t){if(!t.recoverable)throw new Error(e);this.trace(e)},parse:function(e){var t=this,n=[0],r=[null],o=[],i=this.table,a="",s=0,l=0,c=o.slice.call(arguments,1);this.lexer.setInput(e),this.lexer.yy=this.yy,this.yy.lexer=this.lexer,this.yy.parser=this,void 0===this.lexer.yylloc&&(this.lexer.yylloc={});var u=this.lexer.yylloc;o.push(u);var d=this.lexer.options&&this.lexer.options.ranges;function f(){var e;return"number"!=typeof(e=t.lexer.lex()||1)&&(e=t.symbols_[e]||e),e}this.parseError="function"==typeof this.yy.parseError?this.yy.parseError:Object.getPrototypeOf(this).parseError;for(var h,p,g,m,y,_,v,b={};;){if(this.defaultActions[p=n[n.length-1]]?g=this.defaultActions[p]:(null==h&&(h=f()),g=i[p]&&i[p][h]),void 0===g||!g.length||!g[0]){var x;for(y in v=[],i[p])this.terminals_[y]&&y>2&&v.push("'"+this.terminals_[y]+"'");x=this.lexer.showPosition?"Parse error on line "+(s+1)+":\n"+this.lexer.showPosition()+"\nExpecting "+v.join(", ")+", got '"+(this.terminals_[h]||h)+"'":"Parse error on line "+(s+1)+": Unexpected "+(1==h?"end of input":"'"+(this.terminals_[h]||h)+"'"),this.parseError(x,{text:this.lexer.match,token:this.terminals_[h]||h,line:this.lexer.yylineno,loc:u,expected:v})}if(g[0]instanceof Array&&g.length>1)throw new Error("Parse Error: multiple actions possible at state: "+p+", token: "+h);switch(g[0]){case 1:n.push(h),r.push(this.lexer.yytext),o.push(this.lexer.yylloc),n.push(g[1]),h=null,l=this.lexer.yyleng,a=this.lexer.yytext,s=this.lexer.yylineno,u=this.lexer.yylloc;break;case 2:if(b.$=r[r.length-(_=this.productions_[g[1]][1])],b._$={first_line:o[o.length-(_||1)].first_line,last_line:o[o.length-1].last_line,first_column:o[o.length-(_||1)].first_column,last_column:o[o.length-1].last_column},d&&(b._$.range=[o[o.length-(_||1)].range[0],o[o.length-1].range[1]]),void 0!==(m=this.performAction.apply(b,[a,l,s,this.yy,g[1],r,o].concat(c))))return m;_&&(n=n.slice(0,-1*_*2),r=r.slice(0,-1*_),o=o.slice(0,-1*_)),n.push(this.productions_[g[1]][0]),r.push(b.$),o.push(b._$),n.push(i[n[n.length-2]][n[n.length-1]]);break;case 3:return!0}}return!0}},t={initialize:function(){this._nodes=[],this._node={},this._stash=[]},set:function(e){for(var t in e)this._node[t]=e[t];return this._node},node:function(e){return arguments.length&&(this._node=e),this._node},push:function(){this._nodes.push(this._node),this._node={}},unshift:function(){this._nodes.unshift(this._node),this._node={}},yield:function(){var e=this._nodes;return this.initialize(),e}},n=function(){var e={EOF:1,parseError:function(e,t){if(!this.yy.parser)throw new Error(e);this.yy.parser.parseError(e,t)},setInput:function(e){return this._input=e,this._more=this._backtrack=this.done=!1,this.yylineno=this.yyleng=0,this.yytext=this.matched=this.match="",this.conditionStack=["INITIAL"],this.yylloc={first_line:1,first_column:0,last_line:1,last_column:0},this.options.ranges&&(this.yylloc.range=[0,0]),this.offset=0,this},input:function(){var e=this._input[0];return this.yytext+=e,this.yyleng++,this.offset++,this.match+=e,this.matched+=e,e.match(/(?:\r\n?|\n).*/g)?(this.yylineno++,this.yylloc.last_line++):this.yylloc.last_column++,this.options.ranges&&this.yylloc.range[1]++,this._input=this._input.slice(1),e},unput:function(e){var t=e.length,n=e.split(/(?:\r\n?|\n)/g);this._input=e+this._input,this.yytext=this.yytext.substr(0,this.yytext.length-t-1),this.offset-=t;var r=this.match.split(/(?:\r\n?|\n)/g);this.match=this.match.substr(0,this.match.length-1),this.matched=this.matched.substr(0,this.matched.length-1),n.length-1&&(this.yylineno-=n.length-1);var o=this.yylloc.range;return this.yylloc={first_line:this.yylloc.first_line,last_line:this.yylineno+1,first_column:this.yylloc.first_column,last_column:n?(n.length===r.length?this.yylloc.first_column:0)+r[r.length-n.length].length-n[0].length:this.yylloc.first_column-t},this.options.ranges&&(this.yylloc.range=[o[0],o[0]+this.yyleng-t]),this.yyleng=this.yytext.length,this},more:function(){return this._more=!0,this},reject:function(){return this.options.backtrack_lexer?(this._backtrack=!0,this):this.parseError("Lexical error on line "+(this.yylineno+1)+". You can only invoke reject() in the lexer when the lexer is of the backtracking persuasion (options.backtrack_lexer = true).\n"+this.showPosition(),{text:"",token:null,line:this.yylineno})},less:function(e){this.unput(this.match.slice(e))},pastInput:function(){var e=this.matched.substr(0,this.matched.length-this.match.length);return(e.length>20?"...":"")+e.substr(-20).replace(/\n/g,"")},upcomingInput:function(){var e=this.match;return e.length<20&&(e+=this._input.substr(0,20-e.length)),(e.substr(0,20)+(e.length>20?"...":"")).replace(/\n/g,"")},showPosition:function(){var e=this.pastInput(),t=new Array(e.length+1).join("-");return e+this.upcomingInput()+"\n"+t+"^"},test_match:function(e,t){var n,r,o;if(this.options.backtrack_lexer&&(o={yylineno:this.yylineno,yylloc:{first_line:this.yylloc.first_line,last_line:this.last_line,first_column:this.yylloc.first_column,last_column:this.yylloc.last_column},yytext:this.yytext,match:this.match,matches:this.matches,matched:this.matched,yyleng:this.yyleng,offset:this.offset,_more:this._more,_input:this._input,yy:this.yy,conditionStack:this.conditionStack.slice(0),done:this.done},this.options.ranges&&(o.yylloc.range=this.yylloc.range.slice(0))),(r=e[0].match(/(?:\r\n?|\n).*/g))&&(this.yylineno+=r.length),this.yylloc={first_line:this.yylloc.last_line,last_line:this.yylineno+1,first_column:this.yylloc.last_column,last_column:r?r[r.length-1].length-r[r.length-1].match(/\r?\n?/)[0].length:this.yylloc.last_column+e[0].length},this.yytext+=e[0],this.match+=e[0],this.matches=e,this.yyleng=this.yytext.length,this.options.ranges&&(this.yylloc.range=[this.offset,this.offset+=this.yyleng]),this._more=!1,this._backtrack=!1,this._input=this._input.slice(e[0].length),this.matched+=e[0],n=this.performAction.call(this,this.yy,this,t,this.conditionStack[this.conditionStack.length-1]),this.done&&this._input&&(this.done=!1),n)return n;if(this._backtrack){for(var i in o)this[i]=o[i];return!1}return!1},next:function(){if(this.done)return this.EOF;var e,t,n,r;this._input||(this.done=!0),this._more||(this.yytext="",this.match="");for(var o=this._currentRules(),i=0;i<o.length;i++)if((n=this._input.match(this.rules[o[i]]))&&(!t||n[0].length>t[0].length)){if(t=n,r=i,this.options.backtrack_lexer){if(!1!==(e=this.test_match(n,o[i])))return e;if(this._backtrack){t=!1;continue}return!1}if(!this.options.flex)break}return t?!1!==(e=this.test_match(t,o[r]))&&e:""===this._input?this.EOF:this.parseError("Lexical error on line "+(this.yylineno+1)+". Unrecognized text.\n"+this.showPosition(),{text:"",token:null,line:this.yylineno})},lex:function(){return this.next()||this.lex()},begin:function(e){this.conditionStack.push(e)},popState:function(){return this.conditionStack.length-1>0?this.conditionStack.pop():this.conditionStack[0]},_currentRules:function(){return this.conditionStack.length&&this.conditionStack[this.conditionStack.length-1]?this.conditions[this.conditionStack[this.conditionStack.length-1]].rules:this.conditions.INITIAL.rules},topState:function(e){return(e=this.conditionStack.length-1-Math.abs(e||0))>=0?this.conditionStack[e]:"INITIAL"},pushState:function(e){this.begin(e)},stateStackSize:function(){return this.conditionStack.length},options:{},performAction:function(e,t,n,r){switch(n){case 0:return 4;case 1:return 14;case 2:return 12;case 3:return 15;case 4:return 16;case 5:return 22;case 6:return 24;case 7:return 28;case 8:return 30;case 9:return 18;case 10:return t.yytext=t.yytext.substr(1,t.yyleng-2),32;case 11:return t.yytext=t.yytext.substr(1,t.yyleng-2),33;case 12:return 17;case 13:return 31}},rules:[/^(?:\$)/,/^(?:\.\.)/,/^(?:\.)/,/^(?:\*)/,/^(?:[a-zA-Z_]+[a-zA-Z0-9_]*)/,/^(?:\[)/,/^(?:\])/,/^(?:,)/,/^(?:((-?(?:0|[1-9][0-9]*)))?\:((-?(?:0|[1-9][0-9]*)))?(\:((-?(?:0|[1-9][0-9]*)))?)?)/,/^(?:(-?(?:0|[1-9][0-9]*)))/,/^(?:"(?:\\["bfnrt/\\]|\\u[a-fA-F0-9]{4}|[^"\\])*")/,/^(?:'(?:\\['bfnrt/\\]|\\u[a-fA-F0-9]{4}|[^'\\])*')/,/^(?:\(.+?\)(?=\]))/,/^(?:\?\(.+?\)(?=\]))/],conditions:{INITIAL:{rules:[0,1,2,3,4,5,6,7,8,9,10,11,12,13],inclusive:!0}}};return e}();function r(){this.yy={}}return e.lexer=n,r.prototype=e,e.Parser=r,new r}();void 0!==e&&void 0!==n&&(n.parser=o,n.Parser=o.Parser,n.parse=function(){return o.parse.apply(o,arguments)},n.main=function(t){t[1]||(console.log("Usage: "+t[0]+" FILE"),r.exit(1));var o=e("fs").readFileSync(e("path").normalize(t[1]),"utf8");return n.parser.parse(o)},void 0!==t&&e.main===t&&n.main(r.argv.slice(1)))}).call(this,e("_process"))},{_process:14,fs:12,path:13}],2:[function(e,t,n){t.exports={identifier:"[a-zA-Z_]+[a-zA-Z0-9_]*",integer:"-?(?:0|[1-9][0-9]*)",qq_string:'"(?:\\\\["bfnrt/\\\\]|\\\\u[a-fA-F0-9]{4}|[^"\\\\])*"',q_string:"'(?:\\\\['bfnrt/\\\\]|\\\\u[a-fA-F0-9]{4}|[^'\\\\])*'"}},{}],3:[function(e,t,n){var r=e("./dict"),o=e("fs"),i={lex:{macros:{esc:"\\\\",int:r.integer},rules:[["\\$","return 'DOLLAR'"],["\\.\\.","return 'DOT_DOT'"],["\\.","return 'DOT'"],["\\*","return 'STAR'"],[r.identifier,"return 'IDENTIFIER'"],["\\[","return '['"],["\\]","return ']'"],[",","return ','"],["({int})?\\:({int})?(\\:({int})?)?","return 'ARRAY_SLICE'"],["{int}","return 'INTEGER'"],[r.qq_string,"yytext = yytext.substr(1,yyleng-2); return 'QQ_STRING';"],[r.q_string,"yytext = yytext.substr(1,yyleng-2); return 'Q_STRING';"],["\\(.+?\\)(?=\\])","return 'SCRIPT_EXPRESSION'"],["\\?\\(.+?\\)(?=\\])","return 'FILTER_EXPRESSION'"]]},start:"JSON_PATH",bnf:{JSON_PATH:[["DOLLAR",'yy.ast.set({ expression: { type: "root", value: $1 } }); yy.ast.unshift(); return yy.ast.yield()'],["DOLLAR PATH_COMPONENTS",'yy.ast.set({ expression: { type: "root", value: $1 } }); yy.ast.unshift(); return yy.ast.yield()'],["LEADING_CHILD_MEMBER_EXPRESSION","yy.ast.unshift(); return yy.ast.yield()"],["LEADING_CHILD_MEMBER_EXPRESSION PATH_COMPONENTS",'yy.ast.set({ operation: "member", scope: "child", expression: { type: "identifier", value: $1 }}); yy.ast.unshift(); return yy.ast.yield()']],PATH_COMPONENTS:[["PATH_COMPONENT",""],["PATH_COMPONENTS PATH_COMPONENT",""]],PATH_COMPONENT:[["MEMBER_COMPONENT",'yy.ast.set({ operation: "member" }); yy.ast.push()'],["SUBSCRIPT_COMPONENT",'yy.ast.set({ operation: "subscript" }); yy.ast.push() ']],MEMBER_COMPONENT:[["CHILD_MEMBER_COMPONENT",'yy.ast.set({ scope: "child" })'],["DESCENDANT_MEMBER_COMPONENT",'yy.ast.set({ scope: "descendant" })']],CHILD_MEMBER_COMPONENT:[["DOT MEMBER_EXPRESSION",""]],LEADING_CHILD_MEMBER_EXPRESSION:[["MEMBER_EXPRESSION",'yy.ast.set({ scope: "child", operation: "member" })']],DESCENDANT_MEMBER_COMPONENT:[["DOT_DOT MEMBER_EXPRESSION",""]],MEMBER_EXPRESSION:[["STAR",'yy.ast.set({ expression: { type: "wildcard", value: $1 } })'],["IDENTIFIER",'yy.ast.set({ expression: { type: "identifier", value: $1 } })'],["SCRIPT_EXPRESSION",'yy.ast.set({ expression: { type: "script_expression", value: $1 } })'],["INTEGER",'yy.ast.set({ expression: { type: "numeric_literal", value: parseInt($1) } })'],["END",""]],SUBSCRIPT_COMPONENT:[["CHILD_SUBSCRIPT_COMPONENT",'yy.ast.set({ scope: "child" })'],["DESCENDANT_SUBSCRIPT_COMPONENT",'yy.ast.set({ scope: "descendant" })']],CHILD_SUBSCRIPT_COMPONENT:[["[ SUBSCRIPT ]",""]],DESCENDANT_SUBSCRIPT_COMPONENT:[["DOT_DOT [ SUBSCRIPT ]",""]],SUBSCRIPT:[["SUBSCRIPT_EXPRESSION",""],["SUBSCRIPT_EXPRESSION_LIST",'$1.length > 1? yy.ast.set({ expression: { type: "union", value: $1 } }) : $$ = $1']],SUBSCRIPT_EXPRESSION_LIST:[["SUBSCRIPT_EXPRESSION_LISTABLE","$$ = [$1]"],["SUBSCRIPT_EXPRESSION_LIST , SUBSCRIPT_EXPRESSION_LISTABLE","$$ = $1.concat($3)"]],SUBSCRIPT_EXPRESSION_LISTABLE:[["INTEGER",'$$ = { expression: { type: "numeric_literal", value: parseInt($1) } }; yy.ast.set($$)'],["STRING_LITERAL",'$$ = { expression: { type: "string_literal", value: $1 } }; yy.ast.set($$)'],["ARRAY_SLICE",'$$ = { expression: { type: "slice", value: $1 } }; yy.ast.set($$)']],SUBSCRIPT_EXPRESSION:[["STAR",'$$ = { expression: { type: "wildcard", value: $1 } }; yy.ast.set($$)'],["SCRIPT_EXPRESSION",'$$ = { expression: { type: "script_expression", value: $1 } }; yy.ast.set($$)'],["FILTER_EXPRESSION",'$$ = { expression: { type: "filter_expression", value: $1 } }; yy.ast.set($$)']],STRING_LITERAL:[["QQ_STRING","$$ = $1"],["Q_STRING","$$ = $1"]]}};o.readFileSync&&(i.moduleInclude=o.readFileSync(e.resolve("../include/module.js")),i.actionInclude=o.readFileSync(e.resolve("../include/action.js"))),t.exports=i},{"./dict":2,fs:12}],4:[function(e,t,n){var r=e("./aesprim"),o=e("./slice"),i=e("static-eval"),a=e("underscore").uniq,s=function(){return this.initialize.apply(this,arguments)};function l(t,n,o){var i=e("./index"),a=h(r.parse(n).body[0].expression,{"@":t.value}),s=o.replace(/\{\{\s*value\s*\}\}/g,a),l=i.nodes(t.value,s);return l.forEach((function(e){e.path=t.path.concat(e.path.slice(1))})),l}function c(e){return Array.isArray(e)}function u(e){return function(t,n,r,o){var i=t.value,a=t.path,s=[],l=function(t,i){var a;c(t)?(t.forEach((function(e,t){s.length>=o||r(t,e,n)&&s.push({path:i.concat(t),value:e})})),t.forEach((function(t,n){s.length>=o||e&&l(t,i.concat(n))}))):(a=t)&&!(a instanceof Array)&&a instanceof 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Function)throw new Error("handler must be a function");this._fns[e]=t},s.prototype._fns={"member-child-identifier":function(e,t){var n=e.expression.value,r=t.value;if(r instanceof Object&&n in r)return[{value:r[n],path:t.path.concat(n)}]},"member-descendant-identifier":f((function(e,t,n){return e==n})),"subscript-child-numeric_literal":d((function(e,t,n){return e===n})),"member-child-numeric_literal":d((function(e,t,n){return String(e)===String(n)})),"subscript-descendant-numeric_literal":f((function(e,t,n){return e===n})),"member-child-wildcard":d((function(){return!0})),"member-descendant-wildcard":f((function(){return!0})),"subscript-descendant-wildcard":f((function(){return!0})),"subscript-child-wildcard":d((function(){return!0})),"subscript-child-slice":function(e,t){if(c(t.value)){var n=e.expression.value.split(":").map(g),r=t.value.map((function(e,n){return{value:e,path:t.path.concat(n)}}));return o.apply(null,[r].concat(n))}},"subscript-child-union":function(e,t){var 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t(e.oldVersion,e)})),Pa(n).then((function(){}))}(this.dbName),e}}async termCount(e){const t=await this.db;return(e??t.transaction("nodes")).objectStore("nodes").count()}unique(e){const t=new Map,n=[];for(const r of e)t.has(r.id)||(t.set(r.id,!0),n.push(r));return n}async getTermsWithLabelOrSynonym(e,t,n){const r=t?.includeSubclasses??!0,o=await this.db,i=n??o.transaction(["nodes","edges"]),a=i.objectStore("nodes"),s=[...await a.index("by-label").getAll(e),...await a.index("by-synonym").getAll(e)];if(r){const e=await this.recurseEdges("by-object",s.map((e=>e.id)),(e=>"is_a"===e.pred),"sub",i);for(const t of e){const e=await a.get(t);e&&s.push(e)}}return s}async getPropertiesByLabel(e,t,n){const r=t?.includeSubProperties??!0,o=await this.db,i=n??o.transaction(["nodes","edges"]),a=(await this.getTermsWithLabelOrSynonym(e,{includeSubclasses:!1},i)).filter((e=>As(e)));if(r){const e=await 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at).toHexString(),l={_id:s,refSeq:o.refSeq,min:Number(c)-1,max:Number(a),type:f};o.strand&&(l.strand=o.strand);const u=new ht({changedIds:[o._id],typeName:"AddFeatureChange",assembly:r,addedFeature:l,parentFeatureId:o._id});e.submit(u).then((()=>{n.apolloSetSelectedFeature(s)})),t(),i.preventDefault()},children:[i.jsxs(s.DialogContent,{style:{display:"flex",flexDirection:"column"},children:[i.jsx(s.TextField,{margin:"dense",id:"start",label:"Start",type:"number",fullWidth:!0,variant:"outlined",value:c,onChange:e=>{d(e.target.value)}}),i.jsx(s.TextField,{margin:"dense",id:"end",label:"End",type:"number",fullWidth:!0,variant:"outlined",value:a,onChange:e=>{l(e.target.value)},error:_,helperText:_?'"End" must be greater than "Start"':null}),i.jsx(qs,{session:n,ontologyName:"Sequence Ontology",style:{width:170},value:f,filterTerms:Cs,fetchValidTerms:async function(e,t,n){const r=await Ms(e,t);if(r)return r;y(`Type "${e?.type}" does not have any children in the 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Object.values(e.children)){const e=Hs(n,t);r[e._id]=e}const o="string"==typeof e.refSeq?e.refSeq:e.refSeq.toHexString();return{...e,refSeq:o,children:e.children&&r,_id:n}}function Gs({changeManager:e,handleClose:t,session:r,sourceAssemblyId:o,sourceFeature:a}){const{assemblyManager:c}=r,d=c.assemblyList,[f,h]=u.useState(d.find((e=>e.name!==o))?.name),[p,g]=u.useState([]),[m,y]=u.useState(""),[_,v]=u.useState(a.min),[b,x]=u.useState("");function w(e,t){const n={};if(e.children)for(const r of Object.values(e.children)){const e=w(r,t);e.refSeq=m,e.min=e.min+t,e.max=e.max+t,n[e._id]=e}const r="string"==typeof e.refSeq?e.refSeq:e.refSeq.toHexString(),o="string"==typeof e._id?e._id:e._id.toHexString();return{...e,refSeq:r,children:e.children&&n,_id:o}}return u.useEffect((()=>{(async function(){if(y(""),!f)return void x("No assemblies to copy to");const e=await c.waitForAssembly(f);if(!e)return;const{refNameAliases:t}=e;if(!t)return;const 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Vs({changeManager:e,handleClose:t,selectedFeature:n,session:r,setSelectedFeature:o,sourceAssemblyId:a,sourceFeature:c}){const[d,f]=u.useState(""),{ontologyManager:h}=r.apolloDataStore,{featureTypeOntology:p}=h;function g(e){if(!e.parent?.children||1===e.parent.children.size)return;const t=[];for(const n of e.parent.children.values())p?.isTypeOf(n.type,"CDS")||t.push(n);t.sort(((e,t)=>e.min-t.min));const n=[];for(const t of e.parent.children.values())p?.isTypeOf(t.type,"CDS")||n.push(t);if(n.sort(((e,t)=>t.max-e.max)),e.min===t[0].min){let n;for(const r of t)if(r._id!==e._id&&r.min>=e.min){n=r.min;break}if(n&&n!=e.parent.min)return{typeName:"LocationStartChange",changedId:e.parent._id,featureId:e.parent._id,oldLocation:e.parent.min,newLocation:n}}if(e.max===n[0].max){let t;for(const r of n)if(r._id!=e._id&&r.max<=e.max){t=r.max;break}if(t&&t!=e.parent.max)return{typeName:"LocationEndChange",changedId:e.parent._id,featureId:e.parent._id,oldLocation:e.parent.max,newLocation:t}}}return i.jsxs(Bs,{open:!0,title:"Delete feature",handleClose:t,maxWidth:!1,"data-testid":"delete-feature",children:[i.jsxs("form",{onSubmit:r=>{!async function(r){r.preventDefault(),f(""),n?._id===c._id&&o();const i=[],s=new pt({changedIds:[c._id],typeName:"DeleteFeatureChange",assembly:a,changes:[{deletedFeature:l.getSnapshot(c),parentFeatureId:c.parent?._id}]});if(p&&(p.isTypeOf(c.type,"transcript")||p.isTypeOf(c.type,"pseudogenic_transcript"))){const e=g(c);e&&i.push(e)}if(p&&p.isTypeOf(c.type,"exon")){const e=function(e){if(!p)return;if(!p.isTypeOf(e.type,"exon"))return;if(!e.parent?.cdsLocations||0===e.parent.cdsLocations.length||0===e.parent.cdsLocations[0].length)return;if(!e.parent.children)throw new Error("Unable to find parent of CDS");if(1!=e.parent.cdsLocations.length)throw new Error("Unable to handle a transcript with multiple CDSs");const t=(e.parent.cdsLocations.at(0)??[]).sort((({min:e},{min:t})=>e-t));let n;for(const r of e.parent.children.values())if(r.type===t[0].type){n=r;break}if(!n)throw new Error("Unable to find CDS");const r=t[0].min,o=t[t.length-1].max;if(!(e.min>r&&e.max<o||e.max<r||e.min>o)){if(e.min<=r&&e.max>=o)return new pt({changedIds:[n._id],typeName:"DeleteFeatureChange",assembly:a,changes:[{deletedFeature:l.getSnapshot(n),parentFeatureId:n.parent?._id}]});if(e.min<=r&&e.max>r){let r;for(const n of t)if(n.min>e.max){r=n.min;break}if(!r)throw new Error("Error setting new CDS start");return{typeName:"LocationStartChange",changedId:n._id,featureId:n._id,oldLocation:n.min,newLocation:r}}if(e.min<o&&e.max>=o){let r;for(const n of t.reverse())if(n.max<e.min){r=n.max;break}if(!r)throw new Error("Error setting new CDS end");return{typeName:"LocationEndChange",changedId:n._id,featureId:n._id,oldLocation:n.max,newLocation:r}}throw new Error("Unexpected relationship between exon and 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compressed"})]})]})})]})]}),i.jsxs(s.DialogActions,{children:[i.jsx(s.Button,{disabled:!pl(m,w,_,T,E,j,W,J,K)||C,variant:"contained",type:"submit","data-testid":"submit-button",children:C?"Submitting...":"Submit"}),i.jsx(s.Button,{variant:"outlined",type:"submit",onClick:t,children:"Cancel"})]})]}),p?i.jsx(s.DialogContent,{children:i.jsx(s.DialogContentText,{color:"error",children:p})}):null]})}const ml=[{field:"name",headerName:"Assembly Name",width:150,editable:!1},{field:"aliases",headerName:"Aliases",width:300,editable:!0}];function yl({changeManager:e,handleClose:t,session:n}){const{apolloDataStore:r}=n,{collaborationServerDriver:o}=r,a=o.getAssemblies().map((e=>({id:e.name,name:e.displayName,aliases:e.aliases.join(", ")}))),[l,c]=u.useState("");return i.jsxs(Bs,{open:!0,title:"Add assembly aliases",handleClose:t,maxWidth:"sm","data-testid":"add-assembly-alias",fullWidth:!0,children:[i.jsx(s.DialogContent,{style:{display:"flex",flexDirection:"column"},children:i.jsx(s.Box,{sx:{height:400,width:"100%"},children:i.jsx(m.DataGrid,{rows:a,columns:ml,initialState:{pagination:{paginationModel:{pageSize:5}}},pageSizeOptions:[5],processRowUpdate:(n,r)=>{const o=new gt({typeName:"AddAssemblyAliasesChange",assembly:n.id,aliases:n.aliases.split(",")});return e.submit(o).catch((()=>{c("Error submitting change")})),t(),n},disableRowSelectionOnClick:!0})})}),l?i.jsx(s.DialogContent,{children:i.jsx(s.DialogContentText,{color:"error",children:l})}):null]})}class _l{clientStore;constructor(e){this.clientStore=e}}async function vl(e,t){return qa(`Apollo-${e}`,1,{upgrade(e){const n="changes";e.objectStoreNames.contains(n)||e.createObjectStore(n,{autoIncrement:!0});for(const n of t){const t=`features-${n}`;if(!e.objectStoreNames.contains(t)){const n=e.createObjectStore(t);n.createIndex("min","min",{unique:!1}),n.createIndex("max","max",{unique:!1})}const r=`checkresults-${n}`;if(!e.objectStoreNames.contains(r)){const t=e.createObjectStore(r,{keyPath:"_id"});t.createIndex("min","start",{unique:!1}),t.createIndex("max","end",{unique:!1}),t.createIndex("featureId","featureId",{unique:!1})}}}})}class bl extends _l{async getFeatures(e){const{assemblyName:t,end:n,refName:r,start:o}=e,i=(await this.getRegions(t)).map((e=>e.refName)),a=`features-${r}`,s=`checkresults-${r}`,l=[],c=[],u=(await vl(t,i)).transaction([a,s]);for await(const e of u.objectStore(a).index("min").iterate(IDBKeyRange.upperBound(n,!0)))e.value.max>o&&l.push(e.value);for await(const e of u.objectStore(s).index("min").iterate(IDBKeyRange.upperBound(n,!0)))e.value.end>o&&c.push(e.value);return[l,c]}async getSequence(e){const t=o.getSession(this.clientStore),{assemblyManager:n}=t,r=await n.waitForAssembly(e.assemblyName);if(!r)throw new Error(`Assembly not found: "${e.assemblyName}"`);const{configuration:i}=r,{adapter:a}=i.sequence,{pluginManager:s}=o.getEnv(this.clientStore),l=s.getAdapterType(a.type);if(!l)throw new Error(`No adapter found for "${a.type}"`);const c=new(await l.getAdapterClass())(a,void 0,s),u=await c.getSequence(e);if(!u)throw new Error(`Sequence not found: ${JSON.stringify(e)}`);return{seq:u,refSeq:e.refName}}async getRegions(e){const t=o.getSession(this.clientStore),{assemblyManager:n}=t,r=await n.waitForAssembly(e);if(!r)throw new Error(`Assembly not found: "${e}"`);const{regions:i}=r;if(!i)throw new Error(`Assembly not found: "${e}"`);return i}getAssemblies(e){return[]}async getRefNameAliases(e){const t=o.getSession(this.clientStore),{assemblyManager:n}=t,r=await n.waitForAssembly(e);if(!r)throw new Error(`Assembly not found: "${e}"`);const{configuration:i}=r,{refNameAliases:a}=i;if(!a)return[];const{pluginManager:s}=o.getEnv(this.clientStore),l=s.getAdapterType(a.adapter.type);if(!l)throw new Error(`No adapter found for "${a.adapter.type}"`);return new(await l.getAdapterClass())(a.adapter,void 0,s).getRefNameAliases({})}async submitChange(e,t){if(!st(e))return new Wt;const{assembly:n,changedIds:r}=e,o=(await this.getRegions(n)).map((e=>e.refName)),i=await vl(n,o),a=new Set,s=[],c=new Set;if(function(e){return"DeleteFeatureChange"===e.typeName}(e))for(const t of e.changes)if(t.parentFeatureId){const e=this.clientStore.getFeature(t.parentFeatureId);e&&(a.add(e.topLevelFeature),c.add(e.topLevelFeature.refSeq))}else{const{refSeq:e,_id:n}=t.deletedFeature;s.push({refSeq:e,featureId:n}),c.add(e)}else for(const e of r){const t=this.clientStore.getFeature(e);t&&(a.add(t.topLevelFeature),c.add(t.refSeq))}const u=[...c].flatMap((e=>[`features-${e}`,`checkresults-${e}`]));u.push("changes");const d=i.transaction(u,"readwrite");for(const{refSeq:e,featureId:t}of s)d.objectStore(`features-${e}`).delete(t);for(const e of a){const t=l.getSnapshot(e);d.objectStore(`features-${e.refSeq}`).put(t,e._id)}for(const{featureId:e,refSeq:t}of s){const n=d.objectStore(`checkresults-${t}`);for await(const t of n.index("featureId").iterate(e))this.clientStore.deleteCheckResult(t.value._id),t.delete()}for(const e of a){const t=d.objectStore(`checkresults-${e.refSeq}`);for await(const n of t.index("featureId").iterate(e._id))this.clientStore.deleteCheckResult(n.value._id),n.delete()}if(d.objectStore("changes").put({...e.toJSON(),createdAt:new Date}),await d.done,a.size>0){const e=[...ne.getChecks().values()],t=[];for(const r of a){const o=l.getSnapshot(r),i=async(e,t)=>(await this.getSequence({assemblyName:n,refName:r.refSeq,start:e,end:t})).seq;for(const n of e){const e=await n.checkFeature(o,i);for(const n of e)t.push({refSeq:r.refSeq,result:n,topLevelFeatureId:r._id})}}if(t.length>0){const e=o.map((e=>`checkresults-${e}`)),n=i.transaction(e,"readwrite");for(const{refSeq:e,result:r,topLevelFeatureId:o}of t)n.objectStore(`checkresults-${e}`).put({...r,featureId:o});await n.done;for(const{result:e}of t)this.clientStore.addCheckResult(e)}}return new Wt}async searchFeatures(e,t){return[]}async getCheckResults(e){const t=(await this.getRegions(e)).map((e=>e.refName)),n=await vl(e,t),r=[],o=t.map((e=>`checkresults-${e}`)),i=n.transaction(o);for(const e of o)for await(const t of i.objectStore(e).iterate())r.push(t.value);return r}async getChanges(e,t={}){const n=(await this.getRegions(e)).map((e=>e.refName)),r=await vl(e,n);let o=[];for await(const e of r.transaction("changes").store.iterate())o.push({sequence:e.key,...e.value});const{filters:i}=t;if(i?.user){const e=new RegExp(i.user,"i");o=o.filter((t=>void 0!==t.user&&e.test(t.user)))}if(i?.typeName&&(o=o.filter((e=>e.typeName===i.typeName))),i?.startTime){const e=new Date(i.startTime).getTime();o=o.filter((t=>new Date(t.createdAt).getTime()>=e))}if(i?.endTime){const e=new Date(i.endTime).getTime();o=o.filter((t=>new Date(t.createdAt).getTime()<=e))}const a=o.length,s=t.sortField??"sequence",l="asc"===(t.sortOrder??"desc")?1:-1;if(o.sort(((e,t)=>{const n=e[s],r=t[s];return n===r?0:void 0===n?1:void 0===r?-1:n<r?-l:l})),void 0!==t.page&&void 0!==t.pageSize){const e=t.page*t.pageSize;o=o.slice(e,e+t.pageSize)}return{changes:o,totalCount:a}}}const xl={async AddFeatureChange(e,t){const{assembly:n,changes:r}=t;for(const t of r){const{addedFeature:r,parentFeatureId:o}=t;if(o){let t=e.getFeature(o);if(!t&&(await e.loadFeatures([{assemblyName:n,refName:r.refSeq,start:r.min,end:r.max}]),t=e.getFeature(o),!t))throw new Error(`Could not find parent feature "${o}"`);t.attributes.get("_id")||t.setAttribute("_id",[t._id]),t.addChild(r)}else e.addFeature(n,r)}},async DeleteFeatureChange(e,t){for(const n of t.changes){const{deletedFeature:t,parentFeatureId:r}=n;if(r){const n=e.getFeature(r);if(!n)throw new Error(`Could not find parent feature "${r}"`);n.deleteChild(t._id)}else e.getFeature(t._id)&&e.deleteFeature(t._id)}},async FeatureAttributeChange(e,t){for(const[n,r]of t.changedIds.entries()){const o=e.getFeature(r);if(!o)throw new Error(`Could not find feature with identifier "${r}"`);o.setAttributes(new Map(Object.entries(t.changes[n].newAttributes)))}},async LocationEndChange(e,t){for(const n of t.changes){const{featureId:t,newEnd:r}=n,o=e.getFeature(t);if(!o)throw new Error(`Could not find feature with identifier "${t}"`);o.setMax(r)}},async LocationStartChange(e,t){for(const n of t.changes){const{featureId:t,newStart:r}=n,o=e.getFeature(t);if(!o)throw new Error(`Could not find feature with identifier "${t}"`);o.setMin(r)}},async MergeExonsChange(e,t){for(const n of t.changes){const{firstExon:t,secondExon:r}=n,o=e.getFeature(t._id);if(!o)throw new Error(`Could not find feature with identifier "${t._id}"`);o.setMin(Math.min(t.min,r.min)),o.setMax(Math.max(t.max,r.max));const i=o.attributes.get("merged_with")?.slice()??[],a=Lt(Mt(r.attributes));i.includes(a)||i.push(a),o.setAttribute("merged_with",i),o.parent?.deleteChild(r._id)}},async SplitExonChange(e,t){for(const[n]of t.changedIds.entries()){const{exonToBeSplit:r,parentFeatureId:o,upstreamCut:i,downstreamCut:a,leftExonId:s,rightExonId:l}=t.changes[n];if(!o)throw new Error("TODO: Split exon without parent");const[c,u]=t.makeSplitExons(r,i,a,s,l),d=e.getFeature(o);if(!d)throw new Error(`Could not find parent feature "${o}"`);d.addChild(c),d.addChild(u),e.getFeature(r._id)&&e.deleteFeature(r._id)}},async MergeTranscriptsChange(e,t){for(const[n,r]of t.changedIds.entries()){const{firstTranscript:o,secondTranscript:i}=t.changes[n],a=e.getFeature(o._id);if(!a)throw new Error(`Could not find feature with identifier "${r}"`);t.mergeTranscriptsOnClient(a,i),a.parent?.deleteChild(i._id)}},async UndoMergeExonsChange(e,t){for(const n of t.changes){const{exonsToRestore:t,parentFeatureId:r}=n;if(!r)throw new Error("Parent ID is missing");const o=e.getFeature(r);if(!o)throw new Error(`Could not find parent feature "${r}"`);o.attributes.get("_id")||o.setAttribute("_id",[o._id]);for(const e of t)o.addChild(e)}},async UndoSplitExonChange(e,t){for(const n of t.changes){const{exonToRestore:t,parentFeatureId:r,idsToDelete:o}=n;if(!r)throw new Error("Parent ID is missing");const i=e.getFeature(r);if(!i)throw new Error(`Could not find parent feature "${r}"`);i.attributes.get("_id")||i.setAttribute("_id",[i._id]),i.addChild(t),o.map((e=>{i.deleteChild(e)}))}},async UndoMergeTranscriptsChange(e,t){for(const n of t.changes){const{transcriptsToRestore:t,parentFeatureId:r}=n;if(!r)throw new Error("Parent ID is missing");const o=e.getFeature(r);if(!o)throw new Error(`Could not find parent feature "${r}"`);o.attributes.get("_id")||o.setAttribute("_id",[o._id]);for(const e of t)o.addChild(e)}},async StrandChange(e,t){for(const[n,r]of t.changedIds.entries()){const o=e.getFeature(r);if(!o)throw new Error(`Could not find feature with identifier "${r}"`);o.setStrand(t.changes[n].newStrand)}},async TypeChange(e,t){for(const[n,r]of t.changedIds.entries()){const o=e.getFeature(r);if(!o)throw new Error(`Could not find feature with identifier "${r}"`);o.setType(t.changes[n].newType)}}};class wl{dataStore;constructor(e){this.dataStore=e}recentChanges=[];undoneChanges=[];async submit(e,t={}){const{addToRecents:n=!0,submitToBackend:r=!0,updateJobsManager:i=!1}=t,a=o.getSession(this.dataStore),s=new AbortController,{jobsManager:l,isLocked:c,changeInProgress:u,setChangeInProgress:d}=o.getSession(this.dataStore);if(c)return a.notify("Cannot submit changes in locked mode"),void d(!1);if(u)return void a.notify("Could not submit change, there is another change still in progress");d(!0);const f={name:e.typeName,statusMessage:"Pre-validating",progressPct:0,cancelCallback:()=>{s.abort(new DOMException(`Cancelling change "${e.typeName}"`,"AbortError"))}};i&&l.runJob(f);const h=await Kt.frontendPreValidate(e);if(!h.ok){const e=`Pre-validation failed: "${h.resultsMessages}"`;return i&&l.abortJob(f.name,e),a.notify(e,"error"),void d(!1)}const p=e.typeName,g=function(e){return e in xl}(p)?xl[p]:void 0;if(g)try{await g(this.dataStore,e)}catch(e){return i&&l.abortJob(f.name,String(e)),console.error(e),a.notify(`Error encountered in client: ${String(e)}. Data may be out of sync, please refresh the page`,"error"),void d(!1)}if((await Kt.frontendPostValidate(e)).ok||await this.undo(e),r){i&&l.update(f.name,"Submitting to driver");const{collaborationServerDriver:r,getBackendDriver:o}=this.dataStore,s=te(e)?o(e.assembly)??r:r;let c;try{c=await s.submitChange(e,t)}catch(t){return i&&l.abortJob(f.name,String(t)),console.error(t),a.notify(String(t),"error"),d(!1),void await this.undo(e,!1)}if(!c.ok){const t=`Post-validation failed: "${h.resultsMessages}"`;return i&&l.abortJob(f.name,t),a.notify(t,"error"),d(!1),void await this.undo(e,!1)}e.notification&&a.notify(e.notification,"success"),n&&(this.recentChanges.push(e),this.undoneChanges=[])}i&&l.done(f),d(!1)}async undo(e,t=!0){const n=e.getInverse();return this.submit(n,{submitToBackend:t,addToRecents:!1})}async redo(e,t=!0){return this.submit(e,{submitToBackend:t,addToRecents:!1})}async undoLastChange(){const e=o.getSession(this.dataStore),t=this.recentChanges.pop();if(t)return this.undoneChanges.push(t),this.undo(t);e.notify("No changes to undo!","info")}async redoLastChange(){const e=o.getSession(this.dataStore),t=this.undoneChanges.pop();if(t)return this.recentChanges.push(t),this.redo(t);e.notify("No changes to redo!","info")}}class Sl extends _l{inFlight=new Map;refSeqMaps=new Map;async fetch(e,t,n){return e.getFetcher({locationType:"UriLocation",uri:t.toString()})(t,n)}async searchFeatures(e,t){const n=this.clientStore.getInternetAccount(t[0]),{baseURL:r}=n,o=new URL("features/searchFeatures",r),i=new URLSearchParams({assemblies:t.join(","),term:e});o.search=i.toString();const a=o.toString(),s=await this.fetch(n,a);if(!s.ok){const e=await dl(s,"searchFeatures failed");throw new Error(e)}return s.json()}async getFeatures(e){const{assemblyName:t,end:n,refName:r,start:i}=e,{assemblyManager:a}=o.getSession(this.clientStore);if(!a.get(t))throw new Error(`Could not find assembly with name "${t}"`);const s=(await this.getRefSeqMapping(t)).get(r);if(!s)throw new Error(`Could not find refSeq "${r}"`);const l=s.id,c=this.clientStore.getInternetAccount(t),{baseURL:u}=c,d=new URL("features/getFeatures",u),f=new URLSearchParams({refSeq:l,start:String(i),end:String(n)});d.search=f.toString();const h=d.toString(),p=await this.fetch(c,h);if(!p.ok){const e=await dl(p,"getFeatures failed");throw new Error(e)}return this.checkSocket(t,r,c),p.json()}checkSocket(e,t,n){const{socket:r}=n,o=`${e}-${t}`;r.hasListeners(o)||r.on(o,(async e=>{const t=n.retrieveToken();if(!t)return;const r=sn(t),o=new wl(this.clientStore);if(n.setLastChangeSequenceNumber(Number(e.changeSequence)),e.userSessionId===r)return;const i=ee.fromJSON(e.changeInfo);st(i)&&this.haveDataForChange(i)&&await o.submit(i,{submitToBackend:!1})}))}haveDataForChange(e){const{assembly:t,changedIds:n}=e;if(!this.clientStore.assemblies.get(t))return!1;for(const e of n)if(this.clientStore.getFeature(e))return!0;return!1}async getSequence(e){const t=`${e.refName}:${e.start}-${e.end}`,n=this.inFlight.get(t),{assemblyName:r,end:i,refName:a,start:s}=e,{assemblyManager:l}=o.getSession(this.clientStore);if(!l.get(r))throw new Error(`Could not find assembly with name "${r}"`);const c=(await this.getRefSeqMapping(r)).get(a);if(!c)throw new Error(`Could not find refSeq "${a}"`);const u=c.id;if(n)return{seq:await n,refSeq:u};let d=this.clientStore.assemblies.get(r);d||(d=this.clientStore.addAssembly(r));let f=d.refSeqs.get(u);f||(f=d.addRefSeq(u,a));const h=f.getSequence(s,i);if(h.length===i-s)return{seq:h,refSeq:u};const p=this.clientStore.getInternetAccount(r),{baseURL:g}=p,m=new URL("sequence",g),y=new URLSearchParams({refSeq:u,start:String(s),end:String(i)});m.search=y.toString();const _=m.toString(),v=this.getSeqFromServer(p,_,f,s,i);this.inFlight.set(t,v);const b=await v;return this.checkSocket(r,a,p),this.inFlight.delete(t),{seq:b,refSeq:u}}async getSeqFromServer(e,t,n,r,o){const i=await this.fetch(e,t);if(!i.ok){let e;try{e=await i.text()}catch{e=""}throw new Error(`getSequence failed: ${i.status} (${i.statusText})${e?` (${e})`:""}`)}const a=await i.text();return n.addSequence({sequence:a,start:r,stop:o}),a}async getRefSeqMapping(e){const t=this.refSeqMaps.get(e);if(t)return t;const{assemblyManager:n}=o.getSession(this.clientStore);if(!n.get(e))throw new Error(`Could not find assembly with name "${e}"`);const r=this.clientStore.getInternetAccount(e),{baseURL:i}=r,a=new URL("refSeqs",i),s=new URLSearchParams({assembly:e});a.search=s.toString();const l=a.toString(),c=await this.fetch(r,l);if(!c.ok){let e;try{e=await c.text()}catch{e=""}throw new Error(`getRefNameAliases failed: ${c.status} (${c.statusText})${e?` (${e})`:""}`)}const u=await c.json(),d=new Map(u.map((e=>[e.name,{refName:e.name,id:e._id,aliases:e.aliases}])));return this.refSeqMaps.set(e,d),d}async getRefNameAliases(e){return[...(await this.getRefSeqMapping(e)).values()].map((e=>({refName:e.refName,aliases:[...new Set([e.id,...e.aliases])],uniqueId:`alias-${e.id}`})))}async getRefSeqId(e,t){const n=await this.getRefSeqMapping(e);if(!n)return;const r=n.get(t);return r?.id}async getRegions(e){const{assemblyManager:t}=o.getSession(this.clientStore);if(!t.get(e))throw new Error(`Could not find assembly with name "${e}"`);const n=this.clientStore.getInternetAccount(e),{baseURL:r}=n,i=new URL("refSeqs",r),a=new URLSearchParams({assembly:e});i.search=a.toString();const s=i.toString(),l=await this.fetch(n,s);if(!l.ok){let e;try{e=await l.text()}catch{e=""}throw new Error(`getRegions failed: ${l.status} (${l.statusText})${e?` (${e})`:""}`)}return(await l.json()).map((e=>({refName:e.name,start:0,end:e.length})))}getAssemblies(e){const{assemblyManager:t}=o.getSession(this.clientStore);return t.assemblies.filter((t=>{const r=n.getConf(t,["sequence","metadata"]);return!(!(r&&r.apollo&&r.internetAccountConfigId)||e&&r.internetAccountConfigId!==e)}))}async getChanges(e,t={}){const n=this.clientStore.getInternetAccount(e),{baseURL:r}=n,o=new URL("changes",r),i={assembly:e};void 0!==t.page&&(i.page=String(t.page)),void 0!==t.pageSize&&(i.pageSize=String(t.pageSize)),t.sortField&&(i.sortField=t.sortField),t.sortOrder&&(i.sortOrder=t.sortOrder),t.filters?.user&&(i.user=t.filters.user),t.filters?.typeName&&(i.typeName=t.filters.typeName),t.filters?.startTime&&(i.startTime=t.filters.startTime),t.filters?.endTime&&(i.endTime=t.filters.endTime),o.search=new URLSearchParams(i).toString();const a=await this.fetch(n,o.toString());if(!a.ok){const e=await dl(a,"getChanges failed");throw new Error(e)}return a.json()}async getCheckResults(e){const t=this.clientStore.getInternetAccount(e),{baseURL:n}=t,r=new URL("checks",n);r.search=new URLSearchParams({assembly:e}).toString();const o=await this.fetch(t,r.toString());if(!o.ok){const e=await dl(o,"getCheckResults failed");throw new Error(e)}return o.json()}async submitChange(e,t={}){const{internetAccountId:n}=t,r=this.clientStore.getInternetAccount("assembly"in e?e.assembly:void 0,n),{baseURL:o}=r,i=new URL("changes",o).href,a=await this.fetch(r,i,{method:"POST",body:JSON.stringify(e.toJSON()),headers:{"Content-Type":"application/json"}});if(!a.ok){const e=await dl(a,"submitChange failed");throw new Error(e)}const s=new Wt;return a.ok||(s.ok=!1),s}}var Cl;function Al(e,t,n,r){const o={_id:(new at).toHexString(),refSeq:e,type:"CDS",min:n,max:r,strand:t},i={_id:(new at).toHexString(),refSeq:e,type:"exon",min:n,max:r,strand:t},a={};return a[o._id]=o,a[i._id]=i,{_id:(new at).toHexString(),refSeq:e,type:"mRNA",min:n,max:r,strand:t,children:a}}function kl({changeManager:e,handleClose:t,region:n,session:r}){const[o,a]=u.useState(String(n.end)),[l,c]=u.useState(String(n.start+1)),[d,f]=u.useState(Cl.GENE_AND_SUBFEATURES),[h,p]=u.useState(""),[g,m]=u.useState(),[y,_]=u.useState(""),v=Number(o)<=Number(l);let b=Boolean(v)||!(l&&o&&d);return(d===Cl.CUSTOM&&!h||!g&&d===Cl.GENE_AND_SUBFEATURES||!g&&d===Cl.TRANSCRIPT_AND_SUBFEATURES)&&(b=!0),i.jsxs(Bs,{open:!0,title:"Add new feature",handleClose:t,maxWidth:!1,"data-testid":"add-feature-dialog",children:[i.jsxs("form",{onSubmit:async function(i){i.preventDefault(),_("");const a=r.apolloDataStore.getBackendDriver(n.assemblyName);if(!a)return void _("No backend driver found");let s=n.refName;if(a instanceof Sl){const e=await a.getRefSeqId(n.assemblyName,n.refName);if(!e)return void _(`Could not find refSeq for "${n.refName}"`);s=e}if(d===Cl.GENE_AND_SUBFEATURES){const i=Al(s,g,Number(l)-1,Number(o)),a={};a[i._id]=i;const c=(new at).toHexString(),u=new ht({changedIds:[c],typeName:"AddFeatureChange",assembly:n.assemblyName,addedFeature:{_id:c,refSeq:s,min:Number(l)-1,max:Number(o),type:"gene",strand:g,children:a}});return e.submit(u).then((()=>{r.apolloSetSelectedFeature(c)})),void t()}if(d===Cl.TRANSCRIPT_AND_SUBFEATURES){const i=Al(s,g,Number(l)-1,Number(o)),a=new ht({changedIds:[i._id],typeName:"AddFeatureChange",assembly:n.assemblyName,addedFeature:i});return e.submit(a).then((()=>{r.apolloSetSelectedFeature(i._id)})),void t()}if(!h)return void _("No type selected");const c=(new at).toHexString(),u=new ht({changedIds:[c],typeName:"AddFeatureChange",assembly:n.assemblyName,addedFeature:{_id:c,refSeq:s,min:Number(l)-1,max:Number(o),type:h,strand:g}});e.submit(u).then((()=>{r.apolloSetSelectedFeature(c)})),t()},"data-testid":"submit-form",children:[i.jsxs(s.DialogContent,{style:{display:"flex",flexDirection:"column"},children:[i.jsx(s.TextField,{margin:"dense",id:"start",label:"Start",type:"number",fullWidth:!0,variant:"outlined",value:Number(l),onChange:e=>{c(e.target.value)}}),i.jsx(s.TextField,{margin:"dense",id:"end",label:"End",type:"number",fullWidth:!0,variant:"outlined",value:o,onChange:e=>{a(e.target.value)},error:v,helperText:v?'"End" must be greater than "Start"':null}),i.jsxs(s.FormControl,{children:[i.jsx(s.InputLabel,{id:"demo-simple-select-label",children:"Strand"}),i.jsxs(s.Select,{labelId:"demo-simple-select-label",id:"demo-simple-select",label:"Strand",value:g?.toString(),onChange:function(e){switch(_(""),Number(e.target.value)){case 1:m(1);break;case-1:m(-1);break;default:m(void 0)}},children:[i.jsx(s.MenuItem,{value:void 0}),i.jsx(s.MenuItem,{value:1,children:"+"}),i.jsx(s.MenuItem,{value:-1,children:"-"})]})]}),i.jsx(s.FormControl,{style:{marginTop:20},children:i.jsxs(s.RadioGroup,{"aria-labelledby":"demo-radio-buttons-group-label",defaultValue:Cl.GENE_AND_SUBFEATURES,name:"radio-buttons-group",value:d,onChange:e=>{_("");const{value:t}=e.target;Object.keys(Cl).includes(t)&&f(Cl[t])},children:[i.jsx(s.FormControlLabel,{value:Cl.GENE_AND_SUBFEATURES,control:i.jsx(s.Radio,{}),label:i.jsxs(s.Box,{display:"flex",alignItems:"center",children:["Add gene and sub-features",i.jsx(s.Tooltip,{title:"This is a shortcut to create a gene with a single mRNA, exon, and CDS",children:i.jsx(s.IconButton,{size:"small",children:i.jsx(ya,{sx:{fontSize:18}})})})]})}),i.jsx(s.FormControlLabel,{value:Cl.TRANSCRIPT_AND_SUBFEATURES,control:i.jsx(s.Radio,{}),label:i.jsxs(s.Box,{display:"flex",alignItems:"center",children:["Add transcript and sub-features",i.jsx(s.Tooltip,{title:"This is a shortcut to create a single mRNA with exon and CDS, but without a parent gene",children:i.jsx(s.IconButton,{size:"small",children:i.jsx(ya,{sx:{fontSize:18}})})})]})}),i.jsx(s.FormControlLabel,{value:Cl.CUSTOM,checked:d!==Cl.GENE_AND_SUBFEATURES&&d!==Cl.TRANSCRIPT_AND_SUBFEATURES,control:i.jsx(s.Radio,{}),label:"Add feature with a sequence ontology type"})]})}),d===Cl.CUSTOM?i.jsx(qs,{session:r,ontologyName:"Sequence Ontology",style:{width:170},value:h,filterTerms:Cs,renderInput:e=>i.jsx(s.TextField,{...e,label:"Type",variant:"outlined",fullWidth:!0}),onChange:(e,t)=>{var n;t&&(n=t,_(""),p(n))}}):null]}),i.jsxs(s.DialogActions,{children:[i.jsx(s.Button,{variant:"contained",type:"submit",disabled:b,children:"Submit"}),i.jsx(s.Button,{variant:"outlined",type:"submit",onClick:t,children:"Cancel"})]})]}),y?i.jsx(s.DialogContent,{children:i.jsx(s.DialogContentText,{color:"error",children:y})}):null]})}function Nl({changeManager:e,handleClose:t,session:n}){const{internetAccounts:r}=l.getRoot(n),[o,a]=u.useState(""),[c,d]=u.useState(!1),[f,h]=u.useState(!1),p=r.filter((e=>"ApolloInternetAccount"===e.type));if(0===p.length)throw new Error("No Apollo internet account found");const[g,m]=u.useState(p[0]),{collaborationServerDriver:y}=n.apolloDataStore,_=y.getAssemblies(),[v,b]=u.useState(_.at(0));return i.jsxs(Bs,{open:!0,title:"Delete Assembly",handleClose:t,maxWidth:!1,"data-testid":"delete-assembly",children:[i.jsxs("form",{onSubmit:async function(n){if(n.preventDefault(),h(!0),a(""),!v)return void a("Must select assembly!");const r=new xt({typeName:"DeleteAssemblyChange",assembly:v.name});await e.submit(r,{internetAccountId:g.internetAccountId}),t(),n.preventDefault()},children:[i.jsxs(s.DialogContent,{style:{display:"flex",flexDirection:"column"},children:[p.length>1?i.jsxs(i.Fragment,{children:[i.jsx(s.DialogContentText,{children:"Select account"}),i.jsx(s.Select,{value:g.internetAccountId,onChange:function(e){h(!1);const t=p.find((t=>t.internetAccountId===e.target.value));if(!t)throw new Error(`Could not find internetAccount with ID "${e.target.value}"`);m(t)},disabled:f&&!o,children:r.map((e=>i.jsx(s.MenuItem,{value:e.internetAccountId,children:e.name},e.id)))})]}):null,i.jsx(s.DialogContentText,{children:"Select assembly"}),i.jsx(s.Select,{labelId:"label",value:v?.name??"",onChange:function(e){const t=_.find((t=>t.name===e.target.value));b(t)},disabled:0===_.length,children:_.map((e=>i.jsx(s.MenuItem,{value:e.name,children:e.displayName},e.name)))}),i.jsx(s.DialogContentText,{children:i.jsx("strong",{style:{color:"red"},children:"NOTE: All assembly data will be deleted and this operation cannot be undone!"})}),i.jsx(s.FormGroup,{children:i.jsx(s.FormControlLabel,{control:i.jsx(s.Checkbox,{checked:c,onChange:()=>{d(!c)}}),label:"I understand that all assembly data will be deleted"})})]}),i.jsxs(s.DialogActions,{children:[i.jsx(s.Button,{disabled:!v||!c,variant:"contained",type:"submit",children:"Delete"}),i.jsx(s.Button,{variant:"outlined",type:"submit",onClick:t,children:"Cancel"})]})]}),o?i.jsx(s.DialogContent,{children:i.jsx(s.DialogContentText,{color:"error",children:o})}):null]})}!function(e){e.GENE_AND_SUBFEATURES="GENE_AND_SUBFEATURES",e.TRANSCRIPT_AND_SUBFEATURES="TRANSCRIPT_AND_SUBFEATURES",e.CUSTOM="CUSTOM"}(Cl||(Cl={}));var Tl,Rl,El,Il,jl={},Dl={},Ol={},Fl={};function Ml(){if(Tl)return Fl;function e(e){return decodeURIComponent(e)}function t(e,t){return String(t).replaceAll(e,(function(e){return encodeURIComponent(e).toUpperCase()}))}function n(e){return t(/[\n;\r\t=%&,\u0000-\u001f\u007f]/g,e)}function r(e){return t(/[\n\r\t%\u0000-\u001f\u007f]/g,e)}function o(t){if(null==t||!t.length||"."===t)return{};var n={};return t.replace(/\r\n|[\r\n]$/,"").split(";").forEach((function(t){var r,o,i=t.split("=",2);if(null!==(r=i[1])&&void 0!==r&&r.length){i[0]=i[0].trim();var a=n[i[0].trim()];a||(n[i[0]]=a=[]),(o=a).push.apply(o,W(i[1].split(",").map((function(e){return e.trim()})).map(e)))}})),n}function i(e){var t=[];return Object.entries(e).forEach((function(e){var r=G(e,2),o=r[0],i=r[1].map(n).join(",");t.push("".concat(n(o),"=").concat(i))})),t.length?t.join(";"):"."}function a(e,t){var n=null==e.attributes?".":i(e.attributes),o=[null===e.seq_id?".":r(e.seq_id),null===e.source?".":r(e.source),null===e.type?".":r(e.type),null===e.start?".":r(e.start),null===e.end?".":r(e.end),null===e.score?".":r(e.score),null===e.strand?".":r(e.strand),null===e.phase?".":r(e.phase),n],a="".concat(o.join("\t"),"\n");return t[a]?"":(t[a]=!0,a)}function s(e,t){if(Array.isArray(e))return e.map((function(e){return s(e,t)})).join("");var n,r=[a(e,t)];return void 0!==(n=e).child_features&&void 0!==n.derived_features&&r.push.apply(r,W(e.child_features.map((function(e){return s(e,t)}))).concat(W(e.derived_features.map((function(e){return s(e,t)}))))),r.join("")}function l(e){return s(e,{})}function c(e){var t="##".concat(e.directive);return e.value&&(t+=" ".concat(e.value)),t+"\n"}function u(e){return"# ".concat(e.comment,"\n")}function d(e){for(var t=">".concat(e.id).concat(e.description?" ".concat(e.description):"","\n"),n=Math.ceil(e.sequence.length/80),r=new Array(n),o=0;o<n;o+=1){var i=80*o;r[o]=e.sequence.slice(i,i+80)}return"".concat(t).concat(r.join("\n"),"\n")}function f(e){return"attributes"in e?l(e):"directive"in e?c(e):"sequence"in e?d(e):"comment"in e?u(e):"# (invalid item found during format)\n"}return Tl=1,Object.defineProperty(Fl,"__esModule",{value:!0}),Fl.unescape=e,Fl.escape=n,Fl.escapeColumn=r,Fl.parseAttributes=o,Fl.parseFeature=function(t){var n=t.trim().split("\t").map((function(e){return"."===e||""===e?null:e}));return{seq_id:n[0]&&e(n[0]),source:n[1]&&e(n[1]),type:n[2]&&e(n[2]),start:null===n[3]?null:parseInt(n[3],10),end:null===n[4]?null:parseInt(n[4],10),score:null===n[5]?null:parseFloat(n[5]),strand:n[6],phase:n[7],attributes:null===n[8]?null:o(n[8])}},Fl.parseDirective=function(e){var t=/^\s*##\s*(\S+)\s*(.*)/.exec(e);if(!t)return null;var n=G(t,2)[1],r=G(t,3)[2],o={directive:n};if(r.length&&(r=r.replace(/\r\n|[\r\n]$/,""),o.value=r),"sequence-region"===n){var i,a,s=r.split(/\s+/,3);return B(B({},o),{},{seq_id:s[0],start:null===(i=s[1])||void 0===i?void 0:i.replaceAll(/\D/g,""),end:null===(a=s[2])||void 0===a?void 0:a.replaceAll(/\D/g,"")})}if("genome-build"===n){var l=G(r.split(/\s+/,2),2),c=l[0],u=l[1];return B(B({},o),{},{source:c,buildName:u})}return o},Fl.formatAttributes=i,Fl.formatFeature=l,Fl.formatDirective=c,Fl.formatComment=u,Fl.formatSequence=d,Fl.formatItem=function(e){return Array.isArray(e)?e.map(f):f(e)},Fl}function Ll(){if(El)return Dl;El=1,Object.defineProperty(Dl,"__esModule",{value:!0}),Dl.GFFFormattingTransformer=Dl.GFFTransformer=void 0,Dl.parseStringSync=function(t,r){if(!t)return[];var o=n(null!=r?r:{}),i=[],a=i.push.bind(i),s={errorCallback:o.errorCallback};o.parseFeatures&&(s.featureCallback=a),o.parseDirectives&&(s.directiveCallback=a),o.parseComments&&(s.commentCallback=a),o.parseSequences&&(s.sequenceCallback=a);var l=new e.GFF3Parser({disableDerivesFromReferences:o.disableDerivesFromReferences||!1,bufferSize:Infinity});return t.split(/\r\n|[\r\n]/).forEach((function(e){return l.addLine.bind(l)(e,s)})),l.finish(s),i},Dl.formatSync=function(e){var n=[],r=[];e.forEach((function(e){"sequence"in e?r.push(e):n.push(e)}));var o=n.map((function(e){return Array.isArray(e)?(0,t.formatItem)(e).join(""):(0,t.formatItem)(e)})).join("");return r.length&&(o+="##FASTA\n",o+=r.map(t.formatSequence).join("")),o};var e=function(){if(Rl)return Ol;Rl=1,Object.defineProperty(Ol,"__esModule",{value:!0}),Ol.GFF3Parser=Ol.FASTAParser=void 0;var e=Ml(),t=function(){return I((function e(){var t=arguments.length>0&&void 0!==arguments[0]?arguments[0]:function(){};R(this,e),D(this,"seqCallback",void 0),D(this,"currentSequence",void 0),this.seqCallback=t,this.currentSequence=void 0}),[{key:"addLine",value:function(e){var t=/^>\s*(\S+)\s*(.*)/.exec(e);t?(this.flush(),this.currentSequence={id:t[1],sequence:""},t[2]&&(this.currentSequence.description=t[2].trim())):this.currentSequence&&/\S/.test(e)&&(this.currentSequence.sequence+=e.replaceAll(/\s/g,""))}},{key:"flush",value:function(){this.currentSequence&&this.seqCallback(this.currentSequence)}},{key:"finish",value:function(){this.flush()}}])}();Ol.FASTAParser=t;var n=function(){return I((function e(t){R(this,e),D(this,"endCallback",void 0),D(this,"disableDerivesFromReferences",void 0),D(this,"bufferSize",void 0),D(this,"fastaParser",void 0),D(this,"eof",!1),D(this,"lineNumber",0),D(this,"underConstructionTopLevel",[]),D(this,"underConstructionById",{}),D(this,"completedReferences",{}),D(this,"underConstructionOrphans",new Map),this.endCallback=t.endCallback||function(){},this.disableDerivesFromReferences=t.disableDerivesFromReferences||!1,this.bufferSize=void 0===t.bufferSize?Infinity:t.bufferSize}),[{key:"addLine",value:function(n,r){if(this.fastaParser)this.fastaParser.addLine(n);else if(!this.eof)if(this.lineNumber+=1,/^\s*[^#\s>]/.test(n))this.bufferLine(n,r);else{var o=/^\s*(#+)(.*)/.exec(n);if(o){var i=G(o,2)[1],a=G(o,3)[2];if(3===i.length)this.emitAllUnderConstructionFeatures(r);else if(2===i.length){var s=(0,e.parseDirective)(n);s&&("FASTA"===s.directive?(this.emitAllUnderConstructionFeatures(r),this.eof=!0,this.fastaParser=new t(r.sequenceCallback)):this.emitItem(s,r))}else a=a.replace(/\s*/,""),this.emitItem({comment:a},r)}else if(/^\s*$/.test(n));else if(/^\s*>/.test(n))this.emitAllUnderConstructionFeatures(r),this.eof=!0,this.fastaParser=new t(r.sequenceCallback),this.fastaParser.addLine(n);else{var l=n.replaceAll(/\r\n|[\r\n]$/g,"");this.parseError("GFF3 parse error. Cannot parse '".concat(l,"'."),r)}}}},{key:"finish",value:function(e){this.emitAllUnderConstructionFeatures(e),this.fastaParser&&this.fastaParser.finish(),this.endCallback()}},{key:"emitItem",value:function(e,t){Array.isArray(e)&&t.featureCallback?t.featureCallback(e):"directive"in e&&t.directiveCallback?t.directiveCallback(e):"comment"in e&&t.commentCallback&&t.commentCallback(e)}},{key:"enforceBufferSizeLimit",value:function(){for(var e=this,t=arguments.length>0&&void 0!==arguments[0]?arguments[0]:0,n=arguments.length>1?arguments[1]:void 0,r=function(t){var n;t&&Array.isArray(t)&&null!==(n=t[0].attributes)&&void 0!==n&&null!==(n=n.ID)&&void 0!==n&&n[0]&&(t[0].attributes.ID.forEach((function(t){delete e.underConstructionById[t],delete e.completedReferences[t]})),t.forEach((function(e){e.child_features&&e.child_features.forEach((function(e){return r(e)})),e.derived_features&&e.derived_features.forEach((function(e){return r(e)}))})))};this.underConstructionTopLevel.length+t>this.bufferSize;){var o=this.underConstructionTopLevel.shift();o&&(this.emitItem(o,n),r(o))}}},{key:"emitAllUnderConstructionFeatures",value:function(e){var t=this;this.underConstructionTopLevel.forEach((function(n){return t.emitItem.bind(t)(n,e)})),this.underConstructionTopLevel=[],this.underConstructionById={},this.completedReferences={},this.underConstructionOrphans.size&&this.parseError("some features reference other features that do not exist in the file (or in the same '###' scope). ".concat(Array.from(this.underConstructionOrphans.keys()).join(",")),e)}},{key:"bufferLine",value:function(t,n){var r,o,i,a=this,s=B(B({},(0,e.parseFeature)(t)),{},{child_features:[],derived_features:[]}),l=(null===(r=s.attributes)||void 0===r?void 0:r.ID)||[],c=(null===(o=s.attributes)||void 0===o?void 0:o.Parent)||[],u=this.disableDerivesFromReferences?[]:(null===(i=s.attributes)||void 0===i?void 0:i.Derives_from)||[];if(l.length||c.length||u.length){var d=void 0;l.forEach((function(e){var t=a.underConstructionById[e];t?(t[t.length-1].type!==s.type&&a.parseError('multi-line feature "'.concat(e,'" has inconsistent types: "').concat(s.type,'", "').concat(t[t.length-1].type,'"'),n),t.push(s),d=t):(d=[s],a.enforceBufferSizeLimit(1,n),c.length||u.length||a.underConstructionTopLevel.push(d),a.underConstructionById[e]=d,a.resolveReferencesTo(d,e))})),this.resolveReferencesFrom(d||[s],{Parent:c,Derives_from:u},l)}else this.emitItem([s],n)}},{key:"resolveReferencesTo",value:function(e,t){var n=this.underConstructionOrphans.get(t);n&&(e.forEach((function(e){var t;(t=e.child_features).push.apply(t,W(n.Parent))})),e.forEach((function(e){var t;(t=e.derived_features).push.apply(t,W(n.Derives_from))})),this.underConstructionOrphans.delete(t))}},{key:"parseError",value:function(e,t){var n;this.eof=!0,null===(n=t.errorCallback)||void 0===n||n.call(t,"".concat(this.lineNumber,": ").concat(e))}},{key:"postSet",value:function(e,t,n){var r=e[t];r||(e[t]=r={});var o=r[n]||!1;return r[n]=!0,o}},{key:"resolveReferencesFrom",value:function(e,t,n){var r=this;t.Parent.forEach((function(t){var o=r.underConstructionById[t];if(o)n.filter((function(e){return r.postSet(r.completedReferences,e,"Parent,".concat(t))})).length||o.forEach((function(t){t.child_features.push(e)}));else{var i=r.underConstructionOrphans.get(t);i||r.underConstructionOrphans.set(t,i={Parent:[],Derives_from:[]}),i.Parent.push(e)}})),t.Derives_from.forEach((function(t){var o=r.underConstructionById[t];if(o)n.filter((function(e){return r.postSet(r.completedReferences,e,"Derives_from,".concat(t))})).length||o.forEach((function(t){t.derived_features.push(e)}));else{var i=r.underConstructionOrphans.get(t);i||r.underConstructionOrphans.set(t,i={Parent:[],Derives_from:[]}),i.Derives_from.push(e)}}))}}])}();return Ol.GFF3Parser=n,Ol}(),t=Ml();function n(e){return B({parseFeatures:!0,parseDirectives:!1,parseSequences:!0,parseComments:!1,bufferSize:Infinity,disableDerivesFromReferences:!1,errorCallback:function(e){throw new Error(e)}},e)}Dl.GFFTransformer=function(){return I((function t(r){R(this,t),D(this,"decoder",void 0),D(this,"parser",void 0),D(this,"lastString",""),D(this,"parseFeatures",void 0),D(this,"parseDirectives",void 0),D(this,"parseComments",void 0),D(this,"parseSequences",void 0),this.decoder=new TextDecoder;var o=n(null!=r?r:{});this.parser=new e.GFF3Parser({bufferSize:o.bufferSize,disableDerivesFromReferences:o.disableDerivesFromReferences}),this.parseFeatures=o.parseFeatures,this.parseDirectives=o.parseDirectives,this.parseComments=o.parseComments,this.parseSequences=o.parseSequences,this.errorCallback=null==r?void 0:r.errorCallback}),[{key:"makeCallbacks",value:function(e){var t={errorCallback:this.emitErrorMessage.bind(this,e)};return this.parseFeatures&&(t.featureCallback=function(t){e.enqueue(t)}),this.parseDirectives&&(t.directiveCallback=function(t){e.enqueue(t)}),this.parseComments&&(t.commentCallback=function(t){e.enqueue(t)}),this.parseSequences&&(t.sequenceCallback=function(t){e.enqueue(t)}),t}},{key:"emitErrorMessage",value:function(e,t){this.errorCallback?this.errorCallback(t):e.error(t)}},{key:"transform",value:function(e,t){var n="".concat(this.lastString).concat(this.decoder.decode(e,{stream:!0})).split(/\r\n|[\r\n]/g);this.lastString=n.pop()||"";var r,o=j(n);try{for(o.s();!(r=o.n()).done;)this.parser.addLine(r.value,this.makeCallbacks(t))}catch(e){o.e(e)}finally{o.f()}}},{key:"flush",value:function(e){var t=this.makeCallbacks(e);this.lastString="".concat(this.lastString).concat(this.decoder.decode()),this.lastString&&(this.parser.addLine(this.lastString,t),this.lastString=""),this.parser.finish(t)}}])}();var r=function(){return I((function e(){var t=arguments.length>0&&void 0!==arguments[0]?arguments[0]:{};R(this,e),D(this,"linesSinceLastSyncMark",0),D(this,"haveWeEmittedData",!1),D(this,"fastaMode",!1),D(this,"minLinesBetweenSyncMarks",void 0),D(this,"insertVersionDirective",void 0),this.minLinesBetweenSyncMarks=t.minSyncLines||100,this.insertVersionDirective=!1!==t.insertVersionDirective}),[{key:"transform",value:function(e,n){!this.haveWeEmittedData&&this.insertVersionDirective&&(!("directive"in e)||"directive"in e&&"gff-version"!==e.directive)&&n.enqueue("##gff-version 3\n"),"sequence"in 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gc(e){const{classes:t}=hc(),{disabled:n}=e;return i.jsx(s.Button,{className:t.loginButton,variant:"outlined",startIcon:i.jsx(fc,{color:n?"disabled":void 0}),...e,children:"Sign in with Microsoft"})}function mc(e){const{classes:t}=hc();return i.jsx(s.Button,{className:t.loginButton,variant:"outlined",startIcon:i.jsx(uc,{fontSize:"small"}),...e,children:"Continue as Guest"})}const yc=ma()((e=>({divider:{marginTop:e.spacing(4),marginBottom:e.spacing(5)}}))),_c=({baseURL:e,handleClose:t,name:n})=>{const{classes:r}=yc(),[o,a]=u.useState(""),[l,c]=u.useState([]);function d(e){t("google"===e?"google":"microsoft"===e?"microsoft":"guest")}u.useEffect((()=>{const t=new AbortController,{signal:n}=t;return async function(){const t=new URL("auth/types",e).href,r=await fetch(t,{method:"GET",signal:n});if(!r.ok){const e=await dl(r,"Error when retrieving auth types from server");return void a(e)}const o=await r.json();c(o)}().catch((e=>{ts(e)||a(String(e))})),()=>{t.abort(new DOMException("Error 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sessionStorage,bc=e=>r.InternetAccount.named("ApolloInternetAccount").props({type:l.types.literal("ApolloInternetAccount"),configuration:n.ConfigurationReference(e)}).views((e=>({get baseURL(){return n.getConf(e,"baseURL")},getUserId(){const t=e.retrieveToken();if(t)return ln(t).id}}))).volatile((()=>({role:void 0,controller:new AbortController,tokenPromise:void 0}))).actions((e=>({setRole(){const t=e.retrieveToken();if(!t)return void(e.role=void 0);const n=ln(t),{role:r,exp:o}=n;if(o<Date.now()/1e3)return e.role=void 0,void e.removeToken();e.role!==r&&(e.role=r)}}))).actions((e=>{const t=e.getFetcher;return{getFetcher(n){const r=t(n);return async(t,n)=>{const o=await r(t,n);return 403===o.status?(e.removeToken(),e.setRole(),r(t,n)):o}}}})).actions((e=>({removeToken(){sessionStorage.removeItem(e.tokenKey),e.tokenPromise=void 0}}))).actions((e=>({async getToken(t){if(e.tokenPromise)return e.tokenPromise;let n=t?.internetAccountPreAuthorization?.authInfo?.token;if(n)return e.tokenPromise=Promise.resolve(n),e.tokenPromise;if(vc)throw new Error("Did not get internet account pre-authorization info in worker");return n=e.retrieveToken(),n?(e.tokenPromise=Promise.resolve(n),e.tokenPromise):(e.tokenPromise=new Promise(((t,n)=>{e.getTokenFromUser((n=>{e.storeToken(n),t(n)}),(t=>{e.removeToken(),n(t)}))})),e.tokenPromise)}}))).actions((e=>{let t;return{addMessageChannel(e,n){t=t=>{this.finishOAuthWindow(t,e,n)},window.addEventListener("message",t)},deleteMessageChannel(){window.removeEventListener("message",t)},finishOAuthWindow(t,n,r){if(t.data.name!==`JBrowseAuthWindow-${e.internetAccountId}`)return;const o=t.data.redirectUri.replace("#","?"),i=new URL(o),a=new URLSearchParams(i.search).get("access_token");this.deleteMessageChannel(),a?(e.storeToken(a),e.setRole(),n(a)):r(new Error("Error with token endpoint"))},async openAuthWindow(t,n,r){const i=o.isElectron?"http://localhost/auth":globalThis.location.origin+globalThis.location.pathname,a=new URL("auth/login",e.baseURL),s=new URLSearchParams({type:t,redirect_uri:i});a.search=s.toString();const l=`JBrowseAuthWindow-${e.internetAccountId}`;if(o.isElectron){const{ipcRenderer:t}=globalThis.require("electron"),o=await t.invoke("openAuthWindow",{internetAccountId:e.internetAccountId,data:{redirect_uri:i},url:a.toString()}),s=new MessageEvent("message",{data:{name:l,redirectUri:o}});this.finishOAuthWindow(s,n,r)}else this.addMessageChannel(n,r),window.open(a,l,"width=500,height=600")}}})).actions((e=>({async getTokenFromUser(t,n){const{baseURL:r}=e,o=await new Promise(((t,n)=>{const{session:r}=l.getRoot(e),{baseURL:o,name:i}=e;r.queueDialog((e=>[_c,{name:i,handleClose:r=>{r?r instanceof Error?n(r):t(r):n(new Error("user cancelled entry")),e()},baseURL:o}]))}));if("guest"!==o)return void e.openAuthWindow(o,t,n);const i=new URL("auth/login",r),a=new URLSearchParams({type:o});i.search=a.toString();const s=i.toString(),c=await fetch(s,{signal:e.controller.signal});if(!c.ok){const e=await dl(c,"Error when logging in");return void n(new Error(e))}const{token:u}=await c.json();t(u)}}))).volatile((()=>({lastChangeSequenceNumber:void 0}))).actions((e=>({setLastChangeSequenceNumber(t){e.lastChangeSequenceNumber=t}}))).actions((e=>({updateLastChangeSequenceNumber:l.flow((function*(){const{baseURL:t}=e,n=new URL("changes",t),r=new URLSearchParams({limit:"1"});n.search=r.toString();const o=n.toString(),i=e.getFetcher({locationType:"UriLocation",uri:o});let a;try{a=yield i(o,{method:"GET",signal:e.controller.signal})}catch(t){return void(e.controller.signal.aborted||console.error(t))}if(!a.ok){const e=yield dl(a,"Error when fetching server LastChangeSequence");throw new Error(e)}const{changes:s}=yield a.json();e.setLastChangeSequenceNumber(s.length>0?s[0].sequence:0)})),getMissingChanges:l.flow((function*(){const{session:t}=l.getRoot(e),{changeManager:n}=t.apolloDataStore;if(!e.lastChangeSequenceNumber)throw new Error("No LastChangeSequence stored in session. Please, refresh you browser to get last updates from server");const{baseURL:r,lastChangeSequenceNumber:o}=e,i=new URL("changes",r),a=new URLSearchParams({since:String(o),sort:"1"});i.search=a.toString();const s=i.toString(),c=e.getFetcher({locationType:"UriLocation",uri:s});let u;try{u=yield c(s,{method:"GET",signal:e.controller.signal})}catch(t){return void(e.controller.signal.aborted||console.error(t))}if(!u.ok)return void console.error(`Error when fetching the last updates to recover socket connection — ${u.status}`);const{changes:d}=yield u.json();for(const e of d){const t=ee.fromJSON(e);n.submit(t,{submitToBackend:!1})}}))}))).volatile((e=>{const{origin:t,pathname:n}=new URL("socket.io/",e.baseURL);return{socket:so(t,{path:n})}})).actions((e=>({addSocketListeners(){const{session:t}=l.getRoot(e),{notify:n}=t,r=e.retrieveToken();if(!r)throw new Error("No Token found");const o=sn(ln(r)),{socket:i}=e,{addCheckResult:a,changeManager:s,deleteCheckResult:c}=t.apolloDataStore;i.on("connect",(()=>{e.getMissingChanges()})),i.on("connect_error",(e=>{console.error(e),n("Could not connect to the Apollo server.","error")})),i.on("COMMON",(e=>{if("checkResult"in e)return void(e.deleted?c(e.checkResult._id.toString()):a(e.checkResult));if(sessionStorage.setItem("LastChangeSequence",String(e.changeSequence)),e.userSessionId===o)return;const t=ee.fromJSON(e.changeInfo);s.submit(t,{submitToBackend:!1})})),i.on("USER_LOCATION",(e=>{const{channel:n,locations:r,userName:i,userSessionId:a}=e;"USER_LOCATION"===n&&a!==o&&t.addOrUpdateCollaborator({name:i,id:a,locations:r})})),i.on("REQUEST_INFORMATION",(e=>{const{channel:n,userSessionId:o}=e;"REQUEST_INFORMATION"===n&&o!==r&&t.broadcastLocations()}))}}))).actions((e=>({postUserLocation:(t=>{let n;return t=>{clearTimeout(n),n=setTimeout((()=>{!async function(t){if(!l.isAlive(e)||"none"===e.role)return;const{baseURL:n,controller:r}=e,o=new URL("users/userLocation",n).href,i=new URLSearchParams(JSON.stringify(t)),a=e.getFetcher({locationType:"UriLocation",uri:o});try{if(!(await a(o,{method:"POST",body:i,signal:r.signal})).ok)throw new Error("ignore")}catch{console.error("Broadcasting user location failed")}}(t)}),300)}})()}))).volatile((()=>({roleNotificationSent:!1}))).actions((e=>{function t(){e.postUserLocation([])}function n(){if("hidden"===document.visibilityState&&e.postUserLocation([]),"visible"===document.visibilityState){const{session:t}=l.getRoot(e);t.broadcastLocations()}}return{initialize:l.flow((function*(r){if("none"===r){if(!e.roleNotificationSent){const{session:t}=l.getRoot(e);t.notify("You have registered as an Apollo user but have not been given access. Ask your administrator to enable access for your account.","warning"),e.roleNotificationSent=!0}return}if("admin"===r){const t=l.getRoot(e);o.isAbstractMenuManager(t)&&function(e){e.appendToMenu("Apollo",{label:"Admin",type:"subMenu",icon:lo,subMenu:[{label:"Add Assembly",icon:Ln,onClick:e=>{e.queueDialog((t=>[gl,{session:e,handleClose:()=>{t()},changeManager:e.apolloDataStore.changeManager}]))}},{label:"Delete Assembly",icon:co,onClick:e=>{e.queueDialog((t=>[Nl,{session:e,handleClose:()=>{t()},changeManager:e.apolloDataStore.changeManager}]))}},{label:"Import Features",icon:uo,onClick:e=>{e.queueDialog((t=>[Hl,{session:e,handleClose:()=>{t()},changeManager:e.apolloDataStore.changeManager}]))}},{label:"Add reference sequence aliases",onClick:e=>{e.queueDialog((t=>[oc,{session:e,handleClose:()=>{t()},changeManager:e.apolloDataStore.changeManager}]))}},{label:"Add Assembly aliases",onClick:e=>{e.queueDialog((t=>[yl,{session:e,handleClose:()=>{t()},changeManager:e.apolloDataStore.changeManager}]))}},{label:"Manage Users",icon:fo,onClick:e=>{e.queueDialog((t=>[Jl,{session:e,handleClose:()=>{t()},changeManager:e.apolloDataStore.changeManager}]))}},{label:"Manage Checks",icon:ho,onClick:e=>{e.queueDialog((t=>[Vl,{session:e,handleClose:()=>{t()}}]))}}]})}(t)}yield e.updateLastChangeSequenceNumber(),e.addSocketListeners();const{baseURL:i}=e,a=new URL("users/locations",i).href,s=e.getFetcher({locationType:"UriLocation",uri:a});yield s(a,{method:"GET",signal:e.controller.signal}),window.addEventListener("beforeunload",t),document.addEventListener("visibilitychange",n)})),removeBeforeUnloadListener(){window.removeEventListener("beforeunload",t)},removeVisibilityChangeListener(){document.removeEventListener("visibilitychange",n)}}})).actions((e=>({afterAttach(){e.setRole(),c.autorun((async t=>{if(vc)return;const{session:n}=l.getRoot(e);if(n&&e.role)try{await e.initialize(e.role),t.dispose()}catch{}}),{name:"ApolloInternetAccount"})},beforeDestroy(){e.removeBeforeUnloadListener(),e.removeVisibilityChangeListener(),e.controller.abort(new DOMException("Cleaning up Apollo connection","AbortError")),e.socket.close()}})));var xc=function(){return crypto.getRandomValues(new Uint8Array(arguments.length>0&&void 0!==arguments[0]?arguments[0]:21)).reduce((function(e,t){return e+((t&=63)<36?t.toString(36):t<62?(t-26).toString(36).toUpperCase():t>62?"-":"_")}),"")};const wc="undefined"==typeof sessionStorage;class Sc extends _.BaseAdapter{refNameAliasesP;async getRefNameAliases(){if(this.refNameAliasesP)return this.refNameAliasesP;const e=n.readConfObject(this.config,"assemblyId");if(!wc){const t=this.pluginManager?.rootModel?.session?.apolloDataStore;if(!t)throw new Error("No Apollo data store found");const n=t.getBackendDriver(e);if(!n)throw new Error("No backend driver found");return await n.getRefNameAliases(e)}const t=new Promise(((t,n)=>{const r=setTimeout((()=>{n(new Error("timeout"))}),2e4),o=xc(),i=e=>{const n=e.data;(function(e){return"object"==typeof e&&null!==e&&"apollo"in e&&!0===e.apollo&&"refNameAliases"in e})(n)&&n.messageId===o&&(clearTimeout(r),removeEventListener("message",i),t(n.refNameAliases))};addEventListener("message",i),rpcServer.emit("apollo",{apollo:!0,method:"getRefNameAliases",assembly:e,messageId:o})}));return this.refNameAliasesP=t,t}freeResources(){}}var Cc=n.ConfigurationSchema("ApolloRefNameAliasAdapter",{assemblyId:{type:"string",defaultValue:""}},{explicitlyTyped:!0});function Ac(e){return"uniqueId"in e&&"object"!==K(e.data)}var kc=function(){function e(t){var n=this;R(this,e),D(this,"data",void 0),D(this,"subfeatures",void 0),D(this,"parentHandle",void 0),D(this,"uniqueId",void 0),Ac(t)?this.data=t:(this.data=t.data,this.parentHandle=t.parent);var r,o=Ac(t)?t.uniqueId:t.id;if(null==o)throw new Error("SimpleFeature requires a unique `id` or `data.uniqueId` attribute");if(this.uniqueId=String(o),!(this.data.aliases||this.data.end-this.data.start>=0))throw new Error("invalid feature data, end less than start. end: ".concat(this.data.end," start: ").concat(this.data.start));this.data.subfeatures&&(this.subfeatures=null===(r=this.data.subfeatures)||void 0===r?void 0:r.map((function(t,r){return"function"!=typeof t.get?new e({id:t.uniqueId||"".concat(o,"-").concat(r),data:B({strand:n.data.strand},t),parent:n}):t})))}return I(e,[{key:"get",value:function(e){return"subfeatures"===e?this.subfeatures:"parent"===e?this.parent():this.data[e]}},{key:"set",value:function(e,t){this.data[e]=t}},{key:"tags",value:function(){return Object.keys(this.data)}},{key:"id",value:function(){return this.uniqueId}},{key:"parent",value:function(){return this.parentHandle}},{key:"children",value:function(){return this.get("subfeatures")}},{key:"toJSON",value:function(){var e=B(B({},this.data),{},{uniqueId:this.id()}),t=this.parent();t&&(e.parentId=t.id());var n=this.children();return n&&(e.subfeatures=n.map((function(e){return e.toJSON()}))),e}}],[{key:"fromJSON",value:function(t){return new e(B({},t))}}])}();function Nc(e){return"object"==typeof e&&null!==e&&"apollo"in e&&!0===e.apollo}const Tc="undefined"==typeof sessionStorage;class Rc extends _.BaseSequenceAdapter{regions;async getRefNames(){return(await this.getRegions()).map((e=>e.refName))}async getRegions(){if(this.regions)return this.regions;const e=n.readConfObject(this.config,"assemblyId");if(!Tc){const t=this.pluginManager?.rootModel?.session?.apolloDataStore;if(!t)throw new Error("No Apollo data store found");const n=t.getBackendDriver(e);if(!n)throw new Error("No backend driver found");const r=await n.getRegions(e);return this.regions=r,r}const t=await new Promise(((t,n)=>{const r=setTimeout((()=>{n("timeout")}),2e4),o=xc(),i=e=>{const{data:n}=e;Nc(n)&&n.messageId===o&&(clearTimeout(r),removeEventListener("message",i),t(n.regions))};addEventListener("message",i),globalThis.rpcServer.emit("apollo",{apollo:!0,method:"getRegions",assembly:e,messageId:o})}));return this.regions=t,t}getFeatures(e){const{end:t,refName:r,start:o}=e,i=n.readConfObject(this.config,"assemblyId"),a={...e,assemblyName:i};return v.ObservableCreate((async e=>{if(!Tc){const n=this.pluginManager?.rootModel?.session?.apolloDataStore;if(!n)return void e.error("No Apollo data store found");const s=n.getBackendDriver(i);if(!s)return void e.error("No backend driver found");const l=(await s.getRegions(a.assemblyName)).find((e=>e.refName===a.refName));if(!l)return void e.error("Cannot get region");a.end>l.end&&(a.end=l.end);const{seq:c}=await s.getSequence(a);return e.next(new kc({id:`${r} ${o}-${t}`,data:{refName:r,start:o,end:t,seq:c}})),void e.complete()}const n=await new Promise(((e,t)=>{const n=setTimeout((()=>{t("timeout")}),2e4),r=xc(),o=t=>{const{data:i}=t;Nc(i)&&i.messageId===r&&(clearTimeout(n),removeEventListener("message",o),e(i.sequence))};addEventListener("message",o),globalThis.rpcServer.emit("apollo",{apollo:!0,method:"getSequence",region:a,messageId:r})}));e.next(new kc({id:`${r} ${o}-${t}`,data:{refName:r,start:o,end:t,seq:n}})),e.complete()}))}freeResources(){}}var Ec=n.ConfigurationSchema("ApolloSequenceAdapter",{assemblyId:{type:"string",defaultValue:""}},{explicitlyTyped:!0}),Ic=function(){return I((function e(t){R(this,e),D(this,"label",void 0),D(this,"renderingComponent",void 0),D(this,"displayString",void 0),D(this,"matchedAttribute",void 0),D(this,"matchedObject",void 0),D(this,"textSearchAdapter",void 0),D(this,"relevance",void 0),D(this,"trackId",void 0),D(this,"score",void 0),D(this,"locString",void 0),D(this,"results",void 0),this.label=t.label,this.locString=t.locString,this.renderingComponent=t.renderingComponent,this.displayString=t.displayString,this.matchedAttribute=t.matchedAttribute,this.matchedObject=t.matchedObject,this.textSearchAdapter=t.textSearchAdapter,this.relevance=t.relevance,this.trackId=t.trackId,this.score=t.score||1,this.results=t.results||[]}),[{key:"getLabel",value:function(){return this.label}},{key:"getDisplayString",value:function(){return this.displayString||this.label}},{key:"getRenderingComponent",value:function(){return this.renderingComponent}},{key:"getTrackId",value:function(){return this.trackId}},{key:"getScore",value:function(){return this.score}},{key:"updateScore",value:function(e){return this.score=e,this.score}},{key:"getId",value:function(){return"".concat(this.getLabel(),"-").concat(this.getLocation(),"-").concat(this.getTrackId())}},{key:"hasLocation",value:function(){return!!this.locString}},{key:"getLocation",value:function(){return this.locString}},{key:"getComboResults",value:function(){return this.results}}])}();function jc(e,t){const{children:n,indexedIds:r,allIds:o,...i}=t;if(JSON.stringify(i).includes(e))return t;if(n)for(const t of Object.values(n)){const n=jc(e,t);if(n)return n}}class Dc extends _.BaseAdapter{get baseURL(){return n.readConfObject(this.config,"baseURL").uri}get trackId(){return n.readConfObject(this.config,"trackId")}get assemblyNames(){return n.readConfObject(this.config,"assemblyNames")}mapBaseResult(e,t,n){return e.map((e=>{const r=jc(n,e)??e,o=t.getCanonicalRefName(e.refSeq);return new Ic({label:n,trackId:this.trackId,locString:`${o}:${r.min+1}..${r.max}`,matchedObject:r})}))}async searchIndex(e){const t=e.queryString,n=[],r=this.pluginManager?.rootModel?.session;if(!r)return n;const{apolloDataStore:o}=r,{assemblyManager:i}=r;for(const r of this.assemblyNames){const a=o.getBackendDriver(r),s=i.get(r);if(!a||!s)continue;const l=await a.searchFeatures(e.queryString,[r]);n.push(...this.mapBaseResult(l,s,t))}return n}freeResources(){}}var Oc=n.ConfigurationSchema("ApolloTextSearchAdapter",{assemblyNames:{type:"stringArray",defaultValue:[],description:"List of assemblies covered by text search adapter"},trackId:{type:"string",defaultValue:""},baseURL:{type:"fileLocation",defaultValue:{uri:"",locationType:"UriLocation"}}},{explicitlyTyped:!0,explicitIdentifier:"textSearchAdapterId"}),Fc=a.createSvgIcon(i.jsx("path",{d:"M16.59 8.59 12 13.17 7.41 8.59 6 10l6 6 6-6z"}),"ExpandMore"),Mc=a.createSvgIcon(i.jsx("path",{d:"M3 17.25V21h3.75L17.81 9.94l-3.75-3.75zM20.71 7.04c.39-.39.39-1.02 0-1.41l-2.34-2.34a.996.996 0 0 0-1.41 0l-1.83 1.83 3.75 3.75z"}),"Edit"),Lc=a.createSvgIcon(i.jsx("path",{d:"M6 10c-1.1 0-2 .9-2 2s.9 2 2 2 2-.9 2-2-.9-2-2-2m12 0c-1.1 0-2 .9-2 2s.9 2 2 2 2-.9 2-2-.9-2-2-2m-6 0c-1.1 0-2 .9-2 2s.9 2 2 2 2-.9 2-2-.9-2-2-2"}),"MoreHoriz");const Pc=ma()((e=>({attributeKey:{fontWeight:"bold",marginRight:e.spacing(2)}})));function Bc({attributeKey:e}){const{classes:t}=Pc(),n=/^[A-Z]/.test(e);let r,o=e;return e in Dn?(o=Dn[e],r=`On GFF3 export, this will be assigned to the GFF3's reserved "${o}" attribute`):function(e){return e in On}(e)?(o=On[e],r=`On GFF3 export, this will be placed in the GFF3's "${o}" column`):n&&(r="On GFF3 export, this attribute will be changed to start with a lower-case letter because attributes starting with an upper-case letter are reserved in GFF3"),i.jsxs("div",{style:{display:"flex"},children:[i.jsx(s.Typography,{className:t.attributeKey,children:o}),r?i.jsx(s.Tooltip,{title:r,children:i.jsx(s.Chip,{icon:i.jsx(ya,{}),label:"GFF3",size:"small",variant:"outlined"})}):null]})}const qc="Custom",Uc={[qc]:"custom"};for(const[e,t]of Object.entries(jn))Uc[`GFF ${t}`]=e;for(const[e,t]of Object.entries({score:"gff_score",source:"gff_source"}))Uc[`GFF ${t}`]=e;const $c=p.observer((function({setKey:e,session:t}){const{pluginManager:n}=o.getEnv(t),r=n.evaluateExtensionPoint("Apollo-ReservedAttributeKeys",Uc),a=Object.keys(r).at(0)??qc,[l,c]=u.useState(a),[d,f]=u.useState(),h=l===qc;return i.jsxs("form",{onSubmit:function(t){t.preventDefault(),e(h?d:r[l])},children:[i.jsxs("div",{style:{display:"flex",flexDirection:"column",margin:8},children:[i.jsxs(s.FormControl,{variant:"outlined",children:[i.jsx(s.InputLabel,{id:"attribute-key-select-label",children:"Key"}),i.jsx(s.Select,{labelId:"attribute-key-select-label",value:l,label:"Key",onChange:e=>{c(e.target.value)},children:Object.keys(r).map((e=>i.jsx(s.MenuItem,{value:e,children:e},e)))})]}),h?i.jsx(s.TextField,{label:"Attribute 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n=e.session;e.session.queueDialog((r=>[Od,{session:n,handleClose:()=>{r()},featureTypes:l.getSnapshot(t),onUpdate:t=>{e.updateFilteredFeatureTypes(t)}}]))}}]}}})).actions((e=>({setSelectedFeature(t){e.session.apolloSetSelectedFeature(t)},setHoveredFeature(t){e.session.apolloSetHoveredFeature(t)},showFeatureDetailsWidget(t,n){const[r]=e.regions,{assemblyName:o,refName:i}=r,a=e.getAssemblyId(o);if(!a)return;const{session:s}=e,{changeManager:l}=s.apolloDataStore,[c,u]=n??["ApolloFeatureDetailsWidget","apolloFeatureDetailsWidget"],d=s.addWidget(c,u,{feature:t,assembly:a,refName:i,changeManager:l});s.showWidget(d)},afterAttach(){l.addDisposer(e,c.autorun((()=>{e.lgv.initialized&&!e.regionCannotBeRendered()&&(e.session.apolloDataStore.loadFeatures(e.regions),e.lgv.bpPerPx<=e.zoomThreshold&&e.session.apolloDataStore.loadRefSeq(e.regions))}),{name:"LinearApolloSixFrameDisplayLoadFeatures",delay:1e3}))}})))}(0,t);return i.named("LinearApolloSixFrameDisplayLayouts").props({featuresMinMaxLimit:5e5}).volatile((()=>({seenFeatures:c.observable.map()}))).views((e=>({get featuresMinMax(){const{assemblyManager:t}=e.session;return e.lgv.displayedRegions.map((n=>{const r=t.get(n.assemblyName);let i,a;const{end:s,refName:l,start:c}=n;for(const[,t]of e.seenFeatures)l!==r?.getCanonicalRefName(t.refSeq)||!o.doesIntersect2(c,s,t.min,t.max)||t.length>e.featuresMinMaxLimit||(void 0===i&&({min:i}=t),void 0===a&&({max:a}=t),t.minWithChildren<i&&({min:i}=t),t.maxWithChildren>a&&({max:a}=t));if(void 0!==i&&void 0!==a)return[i,a]}))},getGlyph:e=>cf,featureLabelSpacer:t=>e.showFeatureLabels?2*t-1:t}))).actions((e=>({addSeenFeature(t){e.seenFeatures.set(t._id,t)},deleteSeenFeature(t){e.seenFeatures.delete(t)}}))).views((e=>({get geneTrackRowNums(){return[4,5].map((t=>e.featureLabelSpacer(t)))}}))).views((e=>({get featureLayouts(){const{assemblyManager:t}=e.session;return e.lgv.displayedRegions.map(((n,r)=>{const 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r=e.assemblies.get(n.assemblyName),o=r?.getByRefName(n.refName),i=Math.floor(n.start),a=Math.ceil(n.end);let s=o?.getSequence(i,a);if(!s)break;s=s.toUpperCase();const p=Math.round(n.offsetPx-h-(n.start-i)/f);for(let e=0;e<s.length;e++){const n=i+e;uf(m,s.slice(e,e+3),p,e,l,!0,f,n,t,c,u,d)}}}}}),{name:"LinearApolloSixFrameDisplayRenderFeatures"}))}})))}(0,t);return i.named("LinearApolloSixFrameDisplayMouseEvents").volatile((()=>({apolloDragging:null,cursor:void 0}))).views((e=>({getMousePosition(t){const n=function(e,t){const n=e.currentTarget,{clientX:r,clientY:o}=e,{left:i,top:a}=n.getBoundingClientRect(),s=r-i,l=o-a,{coord:c,index:u,refName:d}=t.pxToBp(s);return{x:s,y:l,refName:d,bp:c,regionNumber:u}}(t,e.lgv),{bp:r,regionNumber:i,y:a}=n,s=Math.floor(a/e.apolloRowHeight)+1,l=e.featureLayouts[i].get(s);if(!l)return n;const{featureTypeOntology:c}=e.session.apolloDataStore.ontologyManager;if(!c)throw new Error("featureTypeOntology is undefined");let 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a=r.configuration.ApolloPlugin,s=n.readConfObject(a,"hasRole"),c=n.readConfObject(a,"featureTypeOntologyName"),u=t.some((e=>Wl(e))),d=e.assemblyManager.assemblies.filter((e=>!n.getConf(e,["sequence","metadata"]).apollo));if(!u||s){const{assemblies:t}=e.assemblyManager;if(0===t.length)return;const{pluginConfiguration:r}=e.apolloDataStore;r.ontologies.find((e=>n.readConfObject(e,"name")===c))||r.addOntology({name:"Sequence Ontology",version:"01c33c6d9b6c8dca12e7d3e37b49ee113093c2fa",source:{uri:"https://raw.githubusercontent.com/The-Sequence-Ontology/SO-Ontologies/01c33c6d9b6c8dca12e7d3e37b49ee113093c2fa/Ontology_Files/so.json",locationType:"UriLocation"}});for(const t of d)e.addApolloLocalTrackConfig(t);return l.applySnapshot(e,e.previousSnapshot),void i.dispose()}const{signal:f}=e.abortController;for(const n of t){if("ApolloInternetAccount"!==n.type)continue;const{baseURL:t}=n,r=new URL("jbrowse/config.json",t).href,a=n.getFetcher({locationType:"UriLocation",uri:r});let s,l;try{s=await a(r,{signal:f})}catch(t){e.abortController.signal.aborted||console.error(t);continue}if(s.ok){try{l=await s.json()}catch(e){console.error(e);continue}l.configuration.ApolloPlugin.hasRole&&(o(l,e.previousSnapshot),i.dispose())}else{const e=await dl(s,"Failed to fetch assemblies");console.error(e)}}}),{name:"ApolloSessionLoadConfig"}))},beforeDestroy(){e.abortController.abort(new DOMException("Clean up Apollo session","AbortError"))}}))).views((e=>{const t=e.getTrackActions;return{getTrackActions(r){if("ApolloTrack"===r.type||"ReferenceSequenceTrack"===r.type)return t?.(r);const o=n.readConfObject(r,"trackId");return o.endsWith("-sessionTrack")?[...t?.(r)??[],{label:"Save track to Apollo",onClick:async()=>{const{internetAccounts:t,jbrowse:n}=l.getRoot(e);let i;i=kt(l.getSnapshot(n)),0===Object.keys(i).length&&(i=void 0);const a={...l.getSnapshot(r),trackId:o.slice(0,o.length-13)};for(const n of t){if("ApolloInternetAccount"!==n.type)continue;const t=new Nt({typeName:"ImportJBrowseConfigChange",oldJBrowseConfig:i,newJBrowseConfig:{...i,tracks:i?.tracks&&[...i.tracks,a]}}),{internetAccountId:r}=n;await e.apolloDataStore.changeManager.submit(t,{internetAccountId:r});const{notify:o}=e;o("Track added","success")}e.deleteTrackConf(r),n.addTrackConf(a)},icon:Gf}]:[...t?.(r)??[],{label:"Remove track from Apollo",onClick:async()=>{const{internetAccounts:t,jbrowse:n}=l.getRoot(e);let i;i=kt(l.getSnapshot(n)),0===Object.keys(i).length&&(i=void 0);const a=i?.tracks?.filter((e=>e.trackId!==o));for(const n of t){if("ApolloInternetAccount"!==n.type)continue;const t=new Nt({typeName:"ImportJBrowseConfigChange",oldJBrowseConfig:i,newJBrowseConfig:{...i,tracks:a}}),{internetAccountId:r}=n;await e.apolloDataStore.changeManager.submit(t,{internetAccountId:r});const{notify:o}=e;o("Track removed","success")}e.deleteTrackConf(r),n.deleteTrackConf(r)},icon:Gf}]}}}));return l.types.snapshotProcessor(a,{postProcessor(e,t){if(e.apolloSelectedFeature=void 0,e.apolloDataStore={typeName:"Client",checkResults:{}},!t)return e;const{apolloDataStore:n}=t,{checkResults:r}=n;for(const[,e]of r){const[t]=e.ids}return e}})}const Jf="WorkerGlobalScope"in globalThis;for(const[e,t]of Object.entries(Gt))Q.registerChange(e,t);const Kf=new Sn;ne.registerCheck(Kf.name,Kf);const Yf=new Rn;ne.registerCheck(Yf.name,Yf),Kt.registerValidation(new Xt),Kt.registerValidation(new Zt),e.default=class extends t{name="ApolloPlugin";version="1.0.0";configurationSchema=ff;install(e){!function(e){e.addAdapterType((()=>new y({name:"ApolloSequenceAdapter",configSchema:Ec,adapterMetadata:{category:void 0,hiddenFromGUI:!0,description:void 0},AdapterClass:Rc})))}(e),function(e){e.addAdapterType((()=>new y({name:"ApolloRefNameAliasAdapter",configSchema:Cc,adapterMetadata:{category:void 0,hiddenFromGUI:!0,description:void 0},AdapterClass:Sc})))}(e),function(e){e.addTextSearchAdapterType((()=>new r.TextSearchAdapterType({name:"ApolloTextSearchAdapter",displayName:"Apollo text search adapter",configSchema:Oc,AdapterClass:Dc,description:"Apollo Text Search adapter"})))}(e),e.addWidgetType((()=>{const e=n.ConfigurationSchema("ApolloFeatureDetailsWidget",{});return new r.WidgetType({name:"ApolloFeatureDetailsWidget",heading:"Apollo feature details",configSchema:e,stateModel:lu,ReactComponent:tu})})),e.addWidgetType((()=>{const e=n.ConfigurationSchema("ApolloTranscriptDetails",{});return new r.WidgetType({name:"ApolloTranscriptDetails",heading:"Apollo transcript details",configSchema:e,stateModel:cu,ReactComponent:Lu})})),e.addTrackType((()=>{const t=n.ConfigurationSchema("ApolloTrack",{adapter:""},{baseConfiguration:r.createBaseTrackConfig(e),explicitIdentifier:"trackId"});return new r.TrackType({name:"ApolloTrack",configSchema:t,stateModel:r.createBaseTrackModel(e,"ApolloTrack",t)})})),e.addInternetAccountType((()=>new r.InternetAccountType({name:"ApolloInternetAccount",configSchema:Pn,stateModel:bc(Pn)}))),e.addDisplayType((()=>new r.DisplayType({name:"LinearApolloDisplay",configSchema:Pu,stateModel:qd(0,Pu),trackType:"ApolloTrack",viewType:"LinearGenomeView",ReactComponent:qf}))),e.addDisplayType((()=>new r.DisplayType({name:"LinearApolloSixFrameDisplay",configSchema:Qd,stateModel:df(0,Qd),trackType:"ApolloTrack",viewType:"LinearGenomeView",ReactComponent:Uf}))),e.addDisplayType((()=>new r.DisplayType({name:"LinearApolloReferenceSequenceDisplay",configSchema:Ud,stateModel:Xd(0,Ud),displayName:"Apollo reference sequence display",trackType:"ReferenceSequenceTrack",viewType:"LinearGenomeView",ReactComponent:Zd}))),e.addToExtensionPoint("Core-extendSession",Wf.bind(this,e)),e.addToExtensionPoint("Core-extendPluggableElement",(e=>{if("LinearGenomeView"===e.name){const{stateModel:t}=e,n=t.views((e=>{const t=e.rubberBandMenuItems;return{rubberBandMenuItems:()=>[...t(),{label:"Add new feature",icon:Ln,onClick:()=>{const t=o.getSession(e),{leftOffset:n,rightOffset:r}=e,i=e.getSelectedRegions(n,r);t.queueDialog((e=>[kl,{session:t,handleClose:()=>{e()},region:i[0],changeManager:t.apolloDataStore.changeManager}]))}}]}}));e.stateModel=n}return e})),e.addToExtensionPoint("Core-extendPluggableElement",bf),e.addToExtensionPoint("Core-extendPluggableElement",kf),e.addToExtensionPoint("Core-preProcessTrackConfig",(e=>{if("ReferenceSequenceTrack"!==e.type)return e;const t=e.displays??[],n=t.findIndex((e=>"LinearApolloReferenceSequenceDisplay"===e.type));if(0===n)return e;if(-1===n)return{...e,displays:[{type:"LinearApolloReferenceSequenceDisplay",displayId:`${e.trackId}-LinearApolloReferenceSequenceDisplay`},...t]};const r=t.toSpliced(n,1);return r.unshift({type:"LinearApolloReferenceSequenceDisplay",displayId:`${e.trackId}-LinearApolloReferenceSequenceDisplay`}),{...e,displays:r}})),e.addToExtensionPoint("LinearGenomeView-searchResultSelected",((e,t)=>{const{session:n,result:r}=t,o=r.getTrackId(),i=r.matchedObject;return o?.startsWith("apollo_track_")&&i&&n.apolloSetEventualSelectedFeature(i._id),e})),Jf||e.addToExtensionPoint("Core-extendWorker",(t=>"on"in t&&t.on?(t.on("apollo",(async n=>{if("object"!=typeof(r=n)||null===r||!("apollo"in r)||!0!==r.apollo)return;var r;const{apollo:o,messageId:i,method:a}=n;switch(a){case"getSequence":{const{region:r}=n,{assemblyName:a}=r,s=e.rootModel?.session?.apolloDataStore;if(!s)break;const l=s.getBackendDriver(a);if(!l)break;const{seq:c}=await l.getSequence(r);t.workers[0].postMessage({apollo:o,messageId:i,sequence:c});break}case"getRegions":{const{assembly:r}=n,a=e.rootModel?.session?.apolloDataStore;if(!a)break;const s=a.getBackendDriver(r);if(!s)break;const l=await s.getRegions(r);t.workers[0].postMessage({apollo:o,messageId:i,regions:l});break}case"getRefNameAliases":{const{assembly:r}=n,a=e.rootModel?.session?.apolloDataStore;if(!a)break;const s=a.getBackendDriver(r);if(!s)break;const l=await s.getRefNameAliases(r);t.workers[0].postMessage({apollo:o,messageId:i,refNameAliases:l});break}}})),t):t))}configure(e){o.isAbstractMenuManager(e.rootModel)&&(e.jexl.addFunction("geneBackgroundColor",(e=>"pseudogene"===e?s.alpha("rgb(148, 203, 236)",.6):"ncRNA_gene"===e?s.alpha("rgb(194, 106, 119)",.6):void 0)),function(e){e.insertInMenu("Apollo",{label:"Redo",icon:zf,onClick(e){const{apolloDataStore:t}=e;t.changeManager.redoLastChange()}},0),e.insertInMenu("Apollo",{label:"Undo",icon:Hf,onClick(e){const{apolloDataStore:t}=e;t.changeManager.undoLastChange()}},0),e.appendToMenu("Apollo",{label:"Lock/Unlock session",onClick:e=>{e.toggleLocked()}});const{internetAccounts:t}=e;t.some((e=>Wl(e)))&&e.appendToMenu("Apollo",{label:"Log out",icon:$f,onClick:e=>{e.queueDialog((t=>[Gl,{session:e,handleClose:()=>{t()}}]))}})}(e.rootModel))}},Object.defineProperty(e,"__esModule",{value:!0})}));
 //# sourceMappingURL=jbrowse-plugin-apollo.umd.production.min.js.map