@apollo-annotation/jbrowse-plugin-apollo 0.3.1 → 0.3.2

package/src/LinearApolloDisplay/stateModel/getGlyph.ts

@@ -1,40 +0,0 @@
-import { AnnotationFeature } from '@apollo-annotation/mst'
-
-import { boxGlyph, geneGlyph, genericChildGlyph } from '../glyphs'
-import { Glyph } from '../glyphs/Glyph'
-
-/** get the appropriate glyph for the given top-level feature */
-export function getGlyph(feature: AnnotationFeature): Glyph {
-  if (looksLikeGene(feature)) {
-    return geneGlyph
-  }
-  if (feature.children?.size) {
-    return genericChildGlyph
-  }
-  return boxGlyph
-}
-
-function looksLikeGene(feature: AnnotationFeature) {
-  const { children } = feature
-  if (!children?.size) {
-    return false
-  }
-  for (const [, child] of children) {
-    if (child.type === 'mRNA') {
-      const { children: grandChildren } = child
-      if (!grandChildren?.size) {
-        return false
-      }
-      const hasCDS = [...grandChildren.values()].some(
-        (grandchild) => grandchild.type === 'CDS',
-      )
-      const hasExon = [...grandChildren.values()].some(
-        (grandchild) => grandchild.type === 'exon',
-      )
-      if (hasCDS && hasExon) {
-        return true
-      }
-    }
-  }
-  return false
-}