@apollo-annotation/jbrowse-plugin-apollo 0.2.2 → 0.3.0

package/dist/jbrowse-plugin-apollo.umd.production.min.js

@@ -1,2 +1,2 @@
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n,r,o,i=t.dyn_tree,a=t.stat_desc.static_tree,s=t.stat_desc.has_stree,u=t.stat_desc.elems,c=-1;for(e.heap_len=0,e.heap_max=573,n=0;n<u;n++)0!==i[2*n]?(e.heap[++e.heap_len]=c=n,e.depth[n]=0):i[2*n+1]=0;for(;e.heap_len<2;)i[2*(o=e.heap[++e.heap_len]=c<2?++c:0)]=1,e.depth[o]=0,e.opt_len--,s&&(e.static_len-=a[2*o+1]);for(t.max_code=c,n=e.heap_len>>1;n>=1;n--)Ao(e,i,n);o=u;do{n=e.heap[1],e.heap[1]=e.heap[e.heap_len--],Ao(e,i,1),r=e.heap[1],e.heap[--e.heap_max]=n,e.heap[--e.heap_max]=r,i[2*o]=i[2*n]+i[2*r],e.depth[o]=(e.depth[n]>=e.depth[r]?e.depth[n]:e.depth[r])+1,i[2*n+1]=i[2*r+1]=o,e.heap[1]=o++,Ao(e,i,1)}while(e.heap_len>=2);e.heap[--e.heap_max]=e.heap[1],function(e,t){var n,r,o,i,a,s,u=t.dyn_tree,c=t.max_code,l=t.stat_desc.static_tree,f=t.stat_desc.has_stree,d=t.stat_desc.extra_bits,h=t.stat_desc.extra_base,p=t.stat_desc.max_length,m=0;for(i=0;i<=Qr;i++)e.bl_count[i]=0;for(u[2*e.heap[e.heap_max]+1]=0,n=e.heap_max+1;n<573;n++)(i=u[2*u[2*(r=e.heap[n])+1]+1]+1)>p&&(i=p,m++),u[2*r+1]=i,r>c||(e.bl_count[i]++,a=0,r>=h&&(a=d[r-h]),e.opt_len+=(s=u[2*r])*(i+a),f&&(e.static_len+=s*(l[2*r+1]+a)));if(0!==m){do{for(i=p-1;0===e.bl_count[i];)i--;e.bl_count[i]--,e.bl_count[i+1]+=2,e.bl_count[p]--,m-=2}while(m>0);for(i=p;0!==i;i--)for(r=e.bl_count[i];0!==r;)(o=e.heap[--n])>c||(u[2*o+1]!==i&&(e.opt_len+=(i-u[2*o+1])*u[2*o],u[2*o+1]=i),r--)}}(e,t),So(i,c,e.bl_count)}function Ro(e,t,n){var r,o,i=-1,a=t[1],s=0,u=7,c=4;for(0===a&&(u=138,c=3),t[2*(n+1)+1]=65535,r=0;r<=n;r++)o=a,a=t[2*(r+1)+1],++s<u&&o===a||(s<c?e.bl_tree[2*o]+=s:0!==o?(o!==i&&e.bl_tree[2*o]++,e.bl_tree[32]++):s<=10?e.bl_tree[34]++:e.bl_tree[36]++,s=0,i=o,0===a?(u=138,c=3):o===a?(u=6,c=3):(u=7,c=4))}function No(e,t,n){var r,o,i=-1,a=t[1],s=0,u=7,c=4;for(0===a&&(u=138,c=3),r=0;r<=n;r++)if(o=a,a=t[2*(r+1)+1],!(++s<u&&o===a)){if(s<c)do{bo(e,o,e.bl_tree)}while(0!=--s);else 0!==o?(o!==i&&(bo(e,o,e.bl_tree),s--),bo(e,16,e.bl_tree),_o(e,s-3,2)):s<=10?(bo(e,17,e.bl_tree),_o(e,s-3,3)):(bo(e,18,e.bl_tree),_o(e,s-11,7));s=0,i=o,0===a?(u=138,c=3):o===a?(u=6,c=3):(u=7,c=4)}}Xr(po);var Io=!1;function Po(e,t,n,r){_o(e,0+(r?1:0),3),function(e,t,n,r){ko(e),vo(e,n),vo(e,~n),Zr.arraySet(e.pending_buf,e.window,t,n,e.pending),e.pending+=n}(e,t,n)}Yr._tr_init=function(e){Io||(function(){var e,t,n,r,o,i=new Array(Qr+1);for(n=0,r=0;r<28;r++)for(co[r]=n,e=0;e<1<<to[r];e++)uo[n++]=r;for(uo[n-1]=r,o=0,r=0;r<16;r++)for(po[r]=o,e=0;e<1<<no[r];e++)so[o++]=r;for(o>>=7;r<30;r++)for(po[r]=o<<7,e=0;e<1<<no[r]-7;e++)so[256+o++]=r;for(t=0;t<=Qr;t++)i[t]=0;for(e=0;e<=143;)io[2*e+1]=8,e++,i[8]++;for(;e<=255;)io[2*e+1]=9,e++,i[9]++;for(;e<=279;)io[2*e+1]=7,e++,i[7]++;for(;e<=287;)io[2*e+1]=8,e++,i[8]++;for(So(io,287,i),e=0;e<30;e++)ao[2*e+1]=5,ao[2*e]=wo(e,5);lo=new mo(io,to,257,286,Qr),fo=new mo(ao,no,0,30,Qr),ho=new mo(new Array(0),ro,0,19,7)}(),Io=!0),e.l_desc=new go(e.dyn_ltree,lo),e.d_desc=new go(e.dyn_dtree,fo),e.bl_desc=new go(e.bl_tree,ho),e.bi_buf=0,e.bi_valid=0,xo(e)},Yr._tr_stored_block=Po,Yr._tr_flush_block=function(e,t,n,r){var o,i,a=0;e.level>0?(2===e.strm.data_type&&(e.strm.data_type=function(e){var t,n=4093624447;for(t=0;t<=31;t++,n>>>=1)if(1&n&&0!==e.dyn_ltree[2*t])return 0;if(0!==e.dyn_ltree[18]||0!==e.dyn_ltree[20]||0!==e.dyn_ltree[26])return 1;for(t=32;t<256;t++)if(0!==e.dyn_ltree[2*t])return 1;return 0}(e)),Oo(e,e.l_desc),Oo(e,e.d_desc),a=function(e){var t;for(Ro(e,e.dyn_ltree,e.l_desc.max_code),Ro(e,e.dyn_dtree,e.d_desc.max_code),Oo(e,e.bl_desc),t=18;t>=3&&0===e.bl_tree[2*oo[t]+1];t--);return e.opt_len+=3*(t+1)+5+5+4,t}(e),(i=e.static_len+3+7>>>3)<=(o=e.opt_len+3+7>>>3)&&(o=i)):o=i=n+5,n+4<=o&&-1!==t?Po(e,t,n,r):4===e.strategy||i===o?(_o(e,2+(r?1:0),3),Co(e,io,ao)):(_o(e,4+(r?1:0),3),function(e,t,n,r){var o;for(_o(e,t-257,5),_o(e,n-1,5),_o(e,r-4,4),o=0;o<r;o++)_o(e,e.bl_tree[2*oo[o]+1],3);No(e,e.dyn_ltree,t-1),No(e,e.dyn_dtree,n-1)}(e,e.l_desc.max_code+1,e.d_desc.max_code+1,a+1),Co(e,e.dyn_ltree,e.dyn_dtree)),xo(e),r&&ko(e)},Yr._tr_tally=function(e,t,n){return e.pending_buf[e.d_buf+2*e.last_lit]=t>>>8&255,e.pending_buf[e.d_buf+2*e.last_lit+1]=255&t,e.pending_buf[e.l_buf+e.last_lit]=255&n,e.last_lit++,0===t?e.dyn_ltree[2*n]++:(e.matches++,t--,e.dyn_ltree[2*(uo[n]+256+1)]++,e.dyn_dtree[2*yo(t)]++),e.last_lit===e.lit_bufsize-1},Yr._tr_align=function(e){_o(e,2,3),bo(e,256,io),function(e){16===e.bi_valid?(vo(e,e.bi_buf),e.bi_buf=0,e.bi_valid=0):e.bi_valid>=8&&(e.pending_buf[e.pending++]=255&e.bi_buf,e.bi_buf>>=8,e.bi_valid-=8)}(e)};var To=function(e,t,n,r){for(var o=65535&e|0,i=e>>>16&65535|0,a=0;0!==n;){n-=a=n>2e3?2e3:n;do{i=i+(o=o+t[r++]|0)|0}while(--a);o%=65521,i%=65521}return o|i<<16|0};function Mo(){for(var e,t=[],n=0;n<256;n++){e=n;for(var r=0;r<8;r++)e=1&e?3988292384^e>>>1:e>>>1;t[n]=e}return t}var jo,Fo=Mo(),Lo=function(e,t,n,r){var o=Fo,i=r+n;e^=-1;for(var a=r;a<i;a++)e=e>>>8^o[255&(e^t[a])];return-1^e},Do={2:"need dictionary",1:"stream end",0:"","-1":"file error","-2":"stream error","-3":"data error","-4":"insufficient memory","-5":"buffer error","-6":"incompatible version"},qo=$r,Bo=Yr,Uo=To,zo=Lo,Go=Do,Ho=0,Wo=0,Vo=-2,$o=2,Jo=8,Ko=286,Yo=30,Zo=19,Xo=2*Ko+1,Qo=15,ei=3,ti=258,ni=ti+ei+1,ri=42,oi=103,ii=113,ai=666;function si(e,t){return e.msg=Go[t],t}function ui(e){return(e<<1)-(e>4?9:0)}function ci(e){for(var t=e.length;--t>=0;)e[t]=0}function li(e){var t=e.state,n=t.pending;n>e.avail_out&&(n=e.avail_out),0!==n&&(qo.arraySet(e.output,t.pending_buf,t.pending_out,n,e.next_out),e.next_out+=n,t.pending_out+=n,e.total_out+=n,e.avail_out-=n,t.pending-=n,0===t.pending&&(t.pending_out=0))}function fi(e,t){Bo._tr_flush_block(e,e.block_start>=0?e.block_start:-1,e.strstart-e.block_start,t),e.block_start=e.strstart,li(e.strm)}function di(e,t){e.pending_buf[e.pending++]=t}function hi(e,t){e.pending_buf[e.pending++]=t>>>8&255,e.pending_buf[e.pending++]=255&t}function pi(e,t){var n,r,o=e.max_chain_length,i=e.strstart,a=e.prev_length,s=e.nice_match,u=e.strstart>e.w_size-ni?e.strstart-(e.w_size-ni):0,c=e.window,l=e.w_mask,f=e.prev,d=e.strstart+ti,h=c[i+a-1],p=c[i+a];e.prev_length>=e.good_match&&(o>>=2),s>e.lookahead&&(s=e.lookahead);do{if(c[(n=t)+a]===p&&c[n+a-1]===h&&c[n]===c[i]&&c[++n]===c[i+1]){i+=2,n++;do{}while(c[++i]===c[++n]&&c[++i]===c[++n]&&c[++i]===c[++n]&&c[++i]===c[++n]&&c[++i]===c[++n]&&c[++i]===c[++n]&&c[++i]===c[++n]&&c[++i]===c[++n]&&i<d);if(r=ti-(d-i),i=d-ti,r>a){if(e.match_start=t,a=r,r>=s)break;h=c[i+a-1],p=c[i+a]}}}while((t=f[t&l])>u&&0!=--o);return a<=e.lookahead?a:e.lookahead}function mi(e){var t,n,r,o,i,a,s,u,c,l,f=e.w_size;do{if(o=e.window_size-e.lookahead-e.strstart,e.strstart>=f+(f-ni)){qo.arraySet(e.window,e.window,f,f,0),e.match_start-=f,e.strstart-=f,e.block_start-=f,t=n=e.hash_size;do{r=e.head[--t],e.head[t]=r>=f?r-f:0}while(--n);t=n=f;do{r=e.prev[--t],e.prev[t]=r>=f?r-f:0}while(--n);o+=f}if(0===e.strm.avail_in)break;if(s=e.window,u=e.strstart+e.lookahead,l=void 0,(l=(a=e.strm).avail_in)>(c=o)&&(l=c),n=0===l?0:(a.avail_in-=l,qo.arraySet(s,a.input,a.next_in,l,u),1===a.state.wrap?a.adler=Uo(a.adler,s,l,u):2===a.state.wrap&&(a.adler=zo(a.adler,s,l,u)),a.next_in+=l,a.total_in+=l,l),e.lookahead+=n,e.lookahead+e.insert>=ei)for(e.ins_h=e.window[i=e.strstart-e.insert],e.ins_h=(e.ins_h<<e.hash_shift^e.window[i+1])&e.hash_mask;e.insert&&(e.ins_h=(e.ins_h<<e.hash_shift^e.window[i+ei-1])&e.hash_mask,e.prev[i&e.w_mask]=e.head[e.ins_h],e.head[e.ins_h]=i,i++,e.insert--,!(e.lookahead+e.insert<ei)););}while(e.lookahead<ni&&0!==e.strm.avail_in)}function gi(e,t){var n=65535;for(n>e.pending_buf_size-5&&(n=e.pending_buf_size-5);;){if(e.lookahead<=1){if(mi(e),0===e.lookahead&&t===Ho)return 1;if(0===e.lookahead)break}e.strstart+=e.lookahead,e.lookahead=0;var r=e.block_start+n;if((0===e.strstart||e.strstart>=r)&&(e.lookahead=e.strstart-r,e.strstart=r,fi(e,!1),0===e.strm.avail_out))return 1;if(e.strstart-e.block_start>=e.w_size-ni&&(fi(e,!1),0===e.strm.avail_out))return 1}return e.insert=0,4===t?(fi(e,!0),0===e.strm.avail_out?3:4):(e.strstart>e.block_start&&fi(e,!1),1)}function yi(e,t){for(var n,r;;){if(e.lookahead<ni){if(mi(e),e.lookahead<ni&&t===Ho)return 1;if(0===e.lookahead)break}if(n=0,e.lookahead>=ei&&(e.ins_h=(e.ins_h<<e.hash_shift^e.window[e.strstart+ei-1])&e.hash_mask,n=e.prev[e.strstart&e.w_mask]=e.head[e.ins_h],e.head[e.ins_h]=e.strstart),0!==n&&e.strstart-n<=e.w_size-ni&&(e.match_length=pi(e,n)),e.match_length>=ei)if(r=Bo._tr_tally(e,e.strstart-e.match_start,e.match_length-ei),e.lookahead-=e.match_length,e.match_length<=e.max_lazy_match&&e.lookahead>=ei){e.match_length--;do{e.strstart++,e.ins_h=(e.ins_h<<e.hash_shift^e.window[e.strstart+ei-1])&e.hash_mask,n=e.prev[e.strstart&e.w_mask]=e.head[e.ins_h],e.head[e.ins_h]=e.strstart}while(0!=--e.match_length);e.strstart++}else e.strstart+=e.match_length,e.match_length=0,e.ins_h=e.window[e.strstart],e.ins_h=(e.ins_h<<e.hash_shift^e.window[e.strstart+1])&e.hash_mask;else r=Bo._tr_tally(e,0,e.window[e.strstart]),e.lookahead--,e.strstart++;if(r&&(fi(e,!1),0===e.strm.avail_out))return 1}return e.insert=e.strstart<ei-1?e.strstart:ei-1,4===t?(fi(e,!0),0===e.strm.avail_out?3:4):e.last_lit&&(fi(e,!1),0===e.strm.avail_out)?1:2}function vi(e,t){for(var n,r,o;;){if(e.lookahead<ni){if(mi(e),e.lookahead<ni&&t===Ho)return 1;if(0===e.lookahead)break}if(n=0,e.lookahead>=ei&&(e.ins_h=(e.ins_h<<e.hash_shift^e.window[e.strstart+ei-1])&e.hash_mask,n=e.prev[e.strstart&e.w_mask]=e.head[e.ins_h],e.head[e.ins_h]=e.strstart),e.prev_length=e.match_length,e.prev_match=e.match_start,e.match_length=ei-1,0!==n&&e.prev_length<e.max_lazy_match&&e.strstart-n<=e.w_size-ni&&(e.match_length=pi(e,n),e.match_length<=5&&(1===e.strategy||e.match_length===ei&&e.strstart-e.match_start>4096)&&(e.match_length=ei-1)),e.prev_length>=ei&&e.match_length<=e.prev_length){o=e.strstart+e.lookahead-ei,r=Bo._tr_tally(e,e.strstart-1-e.prev_match,e.prev_length-ei),e.lookahead-=e.prev_length-1,e.prev_length-=2;do{++e.strstart<=o&&(e.ins_h=(e.ins_h<<e.hash_shift^e.window[e.strstart+ei-1])&e.hash_mask,n=e.prev[e.strstart&e.w_mask]=e.head[e.ins_h],e.head[e.ins_h]=e.strstart)}while(0!=--e.prev_length);if(e.match_available=0,e.match_length=ei-1,e.strstart++,r&&(fi(e,!1),0===e.strm.avail_out))return 1}else if(e.match_available){if((r=Bo._tr_tally(e,0,e.window[e.strstart-1]))&&fi(e,!1),e.strstart++,e.lookahead--,0===e.strm.avail_out)return 1}else e.match_available=1,e.strstart++,e.lookahead--}return e.match_available&&(r=Bo._tr_tally(e,0,e.window[e.strstart-1]),e.match_available=0),e.insert=e.strstart<ei-1?e.strstart:ei-1,4===t?(fi(e,!0),0===e.strm.avail_out?3:4):e.last_lit&&(fi(e,!1),0===e.strm.avail_out)?1:2}function _i(e,t,n,r,o){this.good_length=e,this.max_lazy=t,this.nice_length=n,this.max_chain=r,this.func=o}function bi(){this.strm=null,this.status=0,this.pending_buf=null,this.pending_buf_size=0,this.pending_out=0,this.pending=0,this.wrap=0,this.gzhead=null,this.gzindex=0,this.method=Jo,this.last_flush=-1,this.w_size=0,this.w_bits=0,this.w_mask=0,this.window=null,this.window_size=0,this.prev=null,this.head=null,this.ins_h=0,this.hash_size=0,this.hash_bits=0,this.hash_mask=0,this.hash_shift=0,this.block_start=0,this.match_length=0,this.prev_match=0,this.match_available=0,this.strstart=0,this.match_start=0,this.lookahead=0,this.prev_length=0,this.max_chain_length=0,this.max_lazy_match=0,this.level=0,this.strategy=0,this.good_match=0,this.nice_match=0,this.dyn_ltree=new qo.Buf16(2*Xo),this.dyn_dtree=new qo.Buf16(2*(2*Yo+1)),this.bl_tree=new qo.Buf16(2*(2*Zo+1)),ci(this.dyn_ltree),ci(this.dyn_dtree),ci(this.bl_tree),this.l_desc=null,this.d_desc=null,this.bl_desc=null,this.bl_count=new qo.Buf16(Qo+1),this.heap=new qo.Buf16(2*Ko+1),ci(this.heap),this.heap_len=0,this.heap_max=0,this.depth=new qo.Buf16(2*Ko+1),ci(this.depth),this.l_buf=0,this.lit_bufsize=0,this.last_lit=0,this.d_buf=0,this.opt_len=0,this.static_len=0,this.matches=0,this.insert=0,this.bi_buf=0,this.bi_valid=0}function wi(e){var t;return e&&e.state?(e.total_in=e.total_out=0,e.data_type=$o,(t=e.state).pending=0,t.pending_out=0,t.wrap<0&&(t.wrap=-t.wrap),t.status=t.wrap?ri:ii,e.adler=2===t.wrap?0:1,t.last_flush=Ho,Bo._tr_init(t),Wo):si(e,Vo)}function Si(e){var t,n=wi(e);return n===Wo&&((t=e.state).window_size=2*t.w_size,ci(t.head),t.max_lazy_match=jo[t.level].max_lazy,t.good_match=jo[t.level].good_length,t.nice_match=jo[t.level].nice_length,t.max_chain_length=jo[t.level].max_chain,t.strstart=0,t.block_start=0,t.lookahead=0,t.insert=0,t.match_length=t.prev_length=ei-1,t.match_available=0,t.ins_h=0),n}function xi(e,t,n,r,o,i){if(!e)return Vo;var a=1;if(-1===t&&(t=6),r<0?(a=0,r=-r):r>15&&(a=2,r-=16),o<1||o>9||n!==Jo||r<8||r>15||t<0||t>9||i<0||i>4)return si(e,Vo);8===r&&(r=9);var s=new bi;return e.state=s,s.strm=e,s.wrap=a,s.gzhead=null,s.w_bits=r,s.w_size=1<<s.w_bits,s.w_mask=s.w_size-1,s.hash_bits=o+7,s.hash_size=1<<s.hash_bits,s.hash_mask=s.hash_size-1,s.hash_shift=~~((s.hash_bits+ei-1)/ei),s.window=new qo.Buf8(2*s.w_size),s.head=new qo.Buf16(s.hash_size),s.prev=new qo.Buf16(s.w_size),s.lit_bufsize=1<<o+6,s.pending_buf_size=4*s.lit_bufsize,s.pending_buf=new qo.Buf8(s.pending_buf_size),s.d_buf=1*s.lit_bufsize,s.l_buf=3*s.lit_bufsize,s.level=t,s.strategy=i,s.method=n,Si(e)}jo=[new _i(0,0,0,0,gi),new _i(4,4,8,4,yi),new _i(4,5,16,8,yi),new _i(4,6,32,32,yi),new _i(4,4,16,16,vi),new _i(8,16,32,32,vi),new _i(8,16,128,128,vi),new _i(8,32,128,256,vi),new _i(32,128,258,1024,vi),new _i(32,258,258,4096,vi)],Kr.deflateInit=function(e,t){return xi(e,t,Jo,15,8,0)},Kr.deflateInit2=xi,Kr.deflateReset=Si,Kr.deflateResetKeep=wi,Kr.deflateSetHeader=function(e,t){return e&&e.state?2!==e.state.wrap?Vo:(e.state.gzhead=t,Wo):Vo},Kr.deflate=function(e,t){var n,r,o,i;if(!e||!e.state||t>5||t<0)return e?si(e,Vo):Vo;if(r=e.state,!e.output||!e.input&&0!==e.avail_in||r.status===ai&&4!==t)return si(e,0===e.avail_out?-5:Vo);if(r.strm=e,n=r.last_flush,r.last_flush=t,r.status===ri)if(2===r.wrap)e.adler=0,di(r,31),di(r,139),di(r,8),r.gzhead?(di(r,(r.gzhead.text?1:0)+(r.gzhead.hcrc?2:0)+(r.gzhead.extra?4:0)+(r.gzhead.name?8:0)+(r.gzhead.comment?16:0)),di(r,255&r.gzhead.time),di(r,r.gzhead.time>>8&255),di(r,r.gzhead.time>>16&255),di(r,r.gzhead.time>>24&255),di(r,9===r.level?2:r.strategy>=2||r.level<2?4:0),di(r,255&r.gzhead.os),r.gzhead.extra&&r.gzhead.extra.length&&(di(r,255&r.gzhead.extra.length),di(r,r.gzhead.extra.length>>8&255)),r.gzhead.hcrc&&(e.adler=zo(e.adler,r.pending_buf,r.pending,0)),r.gzindex=0,r.status=69):(di(r,0),di(r,0),di(r,0),di(r,0),di(r,0),di(r,9===r.level?2:r.strategy>=2||r.level<2?4:0),di(r,3),r.status=ii);else{var a=Jo+(r.w_bits-8<<4)<<8;a|=(r.strategy>=2||r.level<2?0:r.level<6?1:6===r.level?2:3)<<6,0!==r.strstart&&(a|=32),a+=31-a%31,r.status=ii,hi(r,a),0!==r.strstart&&(hi(r,e.adler>>>16),hi(r,65535&e.adler)),e.adler=1}if(69===r.status)if(r.gzhead.extra){for(o=r.pending;r.gzindex<(65535&r.gzhead.extra.length)&&(r.pending!==r.pending_buf_size||(r.gzhead.hcrc&&r.pending>o&&(e.adler=zo(e.adler,r.pending_buf,r.pending-o,o)),li(e),o=r.pending,r.pending!==r.pending_buf_size));)di(r,255&r.gzhead.extra[r.gzindex]),r.gzindex++;r.gzhead.hcrc&&r.pending>o&&(e.adler=zo(e.adler,r.pending_buf,r.pending-o,o)),r.gzindex===r.gzhead.extra.length&&(r.gzindex=0,r.status=73)}else r.status=73;if(73===r.status)if(r.gzhead.name){o=r.pending;do{if(r.pending===r.pending_buf_size&&(r.gzhead.hcrc&&r.pending>o&&(e.adler=zo(e.adler,r.pending_buf,r.pending-o,o)),li(e),o=r.pending,r.pending===r.pending_buf_size)){i=1;break}i=r.gzindex<r.gzhead.name.length?255&r.gzhead.name.charCodeAt(r.gzindex++):0,di(r,i)}while(0!==i);r.gzhead.hcrc&&r.pending>o&&(e.adler=zo(e.adler,r.pending_buf,r.pending-o,o)),0===i&&(r.gzindex=0,r.status=91)}else r.status=91;if(91===r.status)if(r.gzhead.comment){o=r.pending;do{if(r.pending===r.pending_buf_size&&(r.gzhead.hcrc&&r.pending>o&&(e.adler=zo(e.adler,r.pending_buf,r.pending-o,o)),li(e),o=r.pending,r.pending===r.pending_buf_size)){i=1;break}i=r.gzindex<r.gzhead.comment.length?255&r.gzhead.comment.charCodeAt(r.gzindex++):0,di(r,i)}while(0!==i);r.gzhead.hcrc&&r.pending>o&&(e.adler=zo(e.adler,r.pending_buf,r.pending-o,o)),0===i&&(r.status=oi)}else r.status=oi;if(r.status===oi&&(r.gzhead.hcrc?(r.pending+2>r.pending_buf_size&&li(e),r.pending+2<=r.pending_buf_size&&(di(r,255&e.adler),di(r,e.adler>>8&255),e.adler=0,r.status=ii)):r.status=ii),0!==r.pending){if(li(e),0===e.avail_out)return r.last_flush=-1,Wo}else if(0===e.avail_in&&ui(t)<=ui(n)&&4!==t)return si(e,-5);if(r.status===ai&&0!==e.avail_in)return si(e,-5);if(0!==e.avail_in||0!==r.lookahead||t!==Ho&&r.status!==ai){var s=2===r.strategy?function(e,t){for(var n;;){if(0===e.lookahead&&(mi(e),0===e.lookahead)){if(t===Ho)return 1;break}if(e.match_length=0,n=Bo._tr_tally(e,0,e.window[e.strstart]),e.lookahead--,e.strstart++,n&&(fi(e,!1),0===e.strm.avail_out))return 1}return e.insert=0,4===t?(fi(e,!0),0===e.strm.avail_out?3:4):e.last_lit&&(fi(e,!1),0===e.strm.avail_out)?1:2}(r,t):3===r.strategy?function(e,t){for(var n,r,o,i,a=e.window;;){if(e.lookahead<=ti){if(mi(e),e.lookahead<=ti&&t===Ho)return 1;if(0===e.lookahead)break}if(e.match_length=0,e.lookahead>=ei&&e.strstart>0&&(r=a[o=e.strstart-1])===a[++o]&&r===a[++o]&&r===a[++o]){i=e.strstart+ti;do{}while(r===a[++o]&&r===a[++o]&&r===a[++o]&&r===a[++o]&&r===a[++o]&&r===a[++o]&&r===a[++o]&&r===a[++o]&&o<i);e.match_length=ti-(i-o),e.match_length>e.lookahead&&(e.match_length=e.lookahead)}if(e.match_length>=ei?(n=Bo._tr_tally(e,1,e.match_length-ei),e.lookahead-=e.match_length,e.strstart+=e.match_length,e.match_length=0):(n=Bo._tr_tally(e,0,e.window[e.strstart]),e.lookahead--,e.strstart++),n&&(fi(e,!1),0===e.strm.avail_out))return 1}return e.insert=0,4===t?(fi(e,!0),0===e.strm.avail_out?3:4):e.last_lit&&(fi(e,!1),0===e.strm.avail_out)?1:2}(r,t):jo[r.level].func(r,t);if(3!==s&&4!==s||(r.status=ai),1===s||3===s)return 0===e.avail_out&&(r.last_flush=-1),Wo;if(2===s&&(1===t?Bo._tr_align(r):5!==t&&(Bo._tr_stored_block(r,0,0,!1),3===t&&(ci(r.head),0===r.lookahead&&(r.strstart=0,r.block_start=0,r.insert=0))),li(e),0===e.avail_out))return r.last_flush=-1,Wo}return 4!==t?Wo:r.wrap<=0?1:(2===r.wrap?(di(r,255&e.adler),di(r,e.adler>>8&255),di(r,e.adler>>16&255),di(r,e.adler>>24&255),di(r,255&e.total_in),di(r,e.total_in>>8&255),di(r,e.total_in>>16&255),di(r,e.total_in>>24&255)):(hi(r,e.adler>>>16),hi(r,65535&e.adler)),li(e),r.wrap>0&&(r.wrap=-r.wrap),0!==r.pending?Wo:1)},Kr.deflateEnd=function(e){var t;return e&&e.state?(t=e.state.status)!==ri&&69!==t&&73!==t&&91!==t&&t!==oi&&t!==ii&&t!==ai?si(e,Vo):(e.state=null,t===ii?si(e,-3):Wo):Vo},Kr.deflateSetDictionary=function(e,t){var n,r,o,i,a,s,u,c,l=t.length;if(!e||!e.state)return Vo;if(2===(i=(n=e.state).wrap)||1===i&&n.status!==ri||n.lookahead)return Vo;for(1===i&&(e.adler=Uo(e.adler,t,l,0)),n.wrap=0,l>=n.w_size&&(0===i&&(ci(n.head),n.strstart=0,n.block_start=0,n.insert=0),c=new qo.Buf8(n.w_size),qo.arraySet(c,t,l-n.w_size,n.w_size,0),t=c,l=n.w_size),a=e.avail_in,s=e.next_in,u=e.input,e.avail_in=l,e.next_in=0,e.input=t,mi(n);n.lookahead>=ei;){r=n.strstart,o=n.lookahead-(ei-1);do{n.ins_h=(n.ins_h<<n.hash_shift^n.window[r+ei-1])&n.hash_mask,n.prev[r&n.w_mask]=n.head[n.ins_h],n.head[n.ins_h]=r,r++}while(--o);n.strstart=r,n.lookahead=ei-1,mi(n)}return n.strstart+=n.lookahead,n.block_start=n.strstart,n.insert=n.lookahead,n.lookahead=0,n.match_length=n.prev_length=ei-1,n.match_available=0,e.next_in=s,e.input=u,e.avail_in=a,n.wrap=i,Wo},Kr.deflateInfo="pako deflate (from Nodeca project)";var ki={},Ei=$r,Ai=!0,Ci=!0;try{String.fromCharCode.apply(null,[0])}catch(e){Ai=!1}try{String.fromCharCode.apply(null,new Uint8Array(1))}catch(e){Ci=!1}for(var Oi=new Ei.Buf8(256),Ri=0;Ri<256;Ri++)Oi[Ri]=Ri>=252?6:Ri>=248?5:Ri>=240?4:Ri>=224?3:Ri>=192?2:1;function Ni(e,t){if(t<65534&&(e.subarray&&Ci||!e.subarray&&Ai))return String.fromCharCode.apply(null,Ei.shrinkBuf(e,t));for(var n="",r=0;r<t;r++)n+=String.fromCharCode(e[r]);return n}Oi[254]=Oi[254]=1,ki.string2buf=function(e){var t,n,r,o,i,a=e.length,s=0;for(o=0;o<a;o++)55296==(64512&(n=e.charCodeAt(o)))&&o+1<a&&56320==(64512&(r=e.charCodeAt(o+1)))&&(n=65536+(n-55296<<10)+(r-56320),o++),s+=n<128?1:n<2048?2:n<65536?3:4;for(t=new Ei.Buf8(s),i=0,o=0;i<s;o++)55296==(64512&(n=e.charCodeAt(o)))&&o+1<a&&56320==(64512&(r=e.charCodeAt(o+1)))&&(n=65536+(n-55296<<10)+(r-56320),o++),n<128?t[i++]=n:n<2048?(t[i++]=192|n>>>6,t[i++]=128|63&n):n<65536?(t[i++]=224|n>>>12,t[i++]=128|n>>>6&63,t[i++]=128|63&n):(t[i++]=240|n>>>18,t[i++]=128|n>>>12&63,t[i++]=128|n>>>6&63,t[i++]=128|63&n);return t},ki.buf2binstring=function(e){return Ni(e,e.length)},ki.binstring2buf=function(e){for(var t=new Ei.Buf8(e.length),n=0,r=t.length;n<r;n++)t[n]=e.charCodeAt(n);return t},ki.buf2string=function(e,t){var n,r,o,i,a=t||e.length,s=new Array(2*a);for(r=0,n=0;n<a;)if((o=e[n++])<128)s[r++]=o;else if((i=Oi[o])>4)s[r++]=65533,n+=i-1;else{for(o&=2===i?31:3===i?15:7;i>1&&n<a;)o=o<<6|63&e[n++],i--;i>1?s[r++]=65533:o<65536?s[r++]=o:(s[r++]=55296|(o-=65536)>>10&1023,s[r++]=56320|1023&o)}return Ni(s,r)},ki.utf8border=function(e,t){var n;for((t=t||e.length)>e.length&&(t=e.length),n=t-1;n>=0&&128==(192&e[n]);)n--;return n<0||0===n?t:n+Oi[e[n]]>t?n:t};var Ii=function(){this.input=null,this.next_in=0,this.avail_in=0,this.total_in=0,this.output=null,this.next_out=0,this.avail_out=0,this.total_out=0,this.msg="",this.state=null,this.data_type=2,this.adler=0},Pi=Kr,Ti=$r,Mi=ki,ji=Do,Fi=Ii,Li=Object.prototype.toString,Di=0,qi=-1,Bi=0,Ui=8;function zi(e){if(!(this instanceof zi))return new zi(e);this.options=Ti.assign({level:qi,method:Ui,chunkSize:16384,windowBits:15,memLevel:8,strategy:Bi,to:""},e||{});var t=this.options;t.raw&&t.windowBits>0?t.windowBits=-t.windowBits:t.gzip&&t.windowBits>0&&t.windowBits<16&&(t.windowBits+=16),this.err=0,this.msg="",this.ended=!1,this.chunks=[],this.strm=new Fi,this.strm.avail_out=0;var n=Pi.deflateInit2(this.strm,t.level,t.method,t.windowBits,t.memLevel,t.strategy);if(n!==Di)throw new Error(ji[n]);if(t.header&&Pi.deflateSetHeader(this.strm,t.header),t.dictionary){var r;if(r="string"==typeof t.dictionary?Mi.string2buf(t.dictionary):"[object ArrayBuffer]"===Li.call(t.dictionary)?new Uint8Array(t.dictionary):t.dictionary,(n=Pi.deflateSetDictionary(this.strm,r))!==Di)throw new Error(ji[n]);this._dict_set=!0}}function Gi(e,t){var n=new zi(t);if(n.push(e,!0),n.err)throw n.msg||ji[n.err];return n.result}zi.prototype.push=function(e,t){var n,r,o=this.strm,i=this.options.chunkSize;if(this.ended)return!1;r=t===~~t?t:!0===t?4:0,o.input="string"==typeof e?Mi.string2buf(e):"[object ArrayBuffer]"===Li.call(e)?new Uint8Array(e):e,o.next_in=0,o.avail_in=o.input.length;do{if(0===o.avail_out&&(o.output=new Ti.Buf8(i),o.next_out=0,o.avail_out=i),1!==(n=Pi.deflate(o,r))&&n!==Di)return this.onEnd(n),this.ended=!0,!1;0!==o.avail_out&&(0!==o.avail_in||4!==r&&2!==r)||this.onData("string"===this.options.to?Mi.buf2binstring(Ti.shrinkBuf(o.output,o.next_out)):Ti.shrinkBuf(o.output,o.next_out))}while((o.avail_in>0||0===o.avail_out)&&1!==n);return 4===r?(n=Pi.deflateEnd(this.strm),this.onEnd(n),this.ended=!0,n===Di):2!==r||(this.onEnd(Di),o.avail_out=0,!0)},zi.prototype.onData=function(e){this.chunks.push(e)},zi.prototype.onEnd=function(e){e===Di&&(this.result="string"===this.options.to?this.chunks.join(""):Ti.flattenChunks(this.chunks)),this.chunks=[],this.err=e,this.msg=this.strm.msg},Jr.Deflate=zi,Jr.deflate=Gi,Jr.deflateRaw=function(e,t){return(t=t||{}).raw=!0,Gi(e,t)},Jr.gzip=function(e,t){return(t=t||{}).gzip=!0,Gi(e,t)};var Hi={},Wi={},Vi=$r,$i=[3,4,5,6,7,8,9,10,11,13,15,17,19,23,27,31,35,43,51,59,67,83,99,115,131,163,195,227,258,0,0],Ji=[16,16,16,16,16,16,16,16,17,17,17,17,18,18,18,18,19,19,19,19,20,20,20,20,21,21,21,21,16,72,78],Ki=[1,2,3,4,5,7,9,13,17,25,33,49,65,97,129,193,257,385,513,769,1025,1537,2049,3073,4097,6145,8193,12289,16385,24577,0,0],Yi=[16,16,16,16,17,17,18,18,19,19,20,20,21,21,22,22,23,23,24,24,25,25,26,26,27,27,28,28,29,29,64,64],Zi=$r,Xi=To,Qi=Lo,ea=function(e,t){var n,r,o,i,a,s,u,c,l,f,d,h,p,m,g,y,v,_,b,w,S,x,k,E,A;E=e.input,o=(r=e.next_in)+(e.avail_in-5),A=e.output,a=(i=e.next_out)-(t-e.avail_out),s=i+(e.avail_out-257),u=(n=e.state).dmax,c=n.wsize,l=n.whave,f=n.wnext,d=n.window,h=n.hold,p=n.bits,m=n.lencode,g=n.distcode,y=(1<<n.lenbits)-1,v=(1<<n.distbits)-1;e:do{p<15&&(h+=E[r++]<<p,h+=E[r++]<<(p+=8),p+=8),_=m[h&y];t:for(;;){if(h>>>=b=_>>>24,p-=b,0==(b=_>>>16&255))A[i++]=65535&_;else{if(!(16&b)){if(0==(64&b)){_=m[(65535&_)+(h&(1<<b)-1)];continue t}if(32&b){n.mode=12;break e}e.msg="invalid literal/length code",n.mode=30;break e}w=65535&_,(b&=15)&&(p<b&&(h+=E[r++]<<p,p+=8),w+=h&(1<<b)-1,h>>>=b,p-=b),p<15&&(h+=E[r++]<<p,h+=E[r++]<<(p+=8),p+=8),_=g[h&v];n:for(;;){if(h>>>=b=_>>>24,p-=b,!(16&(b=_>>>16&255))){if(0==(64&b)){_=g[(65535&_)+(h&(1<<b)-1)];continue n}e.msg="invalid distance code",n.mode=30;break e}if(S=65535&_,p<(b&=15)&&(h+=E[r++]<<p,(p+=8)<b&&(h+=E[r++]<<p,p+=8)),(S+=h&(1<<b)-1)>u){e.msg="invalid distance too far back",n.mode=30;break e}if(h>>>=b,p-=b,S>(b=i-a)){if((b=S-b)>l&&n.sane){e.msg="invalid distance too far back",n.mode=30;break e}if(x=0,k=d,0===f){if(x+=c-b,b<w){w-=b;do{A[i++]=d[x++]}while(--b);x=i-S,k=A}}else if(f<b){if(x+=c+f-b,(b-=f)<w){w-=b;do{A[i++]=d[x++]}while(--b);if(x=0,f<w){w-=b=f;do{A[i++]=d[x++]}while(--b);x=i-S,k=A}}}else if(x+=f-b,b<w){w-=b;do{A[i++]=d[x++]}while(--b);x=i-S,k=A}for(;w>2;)A[i++]=k[x++],A[i++]=k[x++],A[i++]=k[x++],w-=3;w&&(A[i++]=k[x++],w>1&&(A[i++]=k[x++]))}else{x=i-S;do{A[i++]=A[x++],A[i++]=A[x++],A[i++]=A[x++],w-=3}while(w>2);w&&(A[i++]=A[x++],w>1&&(A[i++]=A[x++]))}break}}break}}while(r<o&&i<s);h&=(1<<(p-=(w=p>>3)<<3))-1,e.next_in=r-=w,e.next_out=i,e.avail_in=r<o?o-r+5:5-(r-o),e.avail_out=i<s?s-i+257:257-(i-s),n.hold=h,n.bits=p},ta=function(e,t,n,r,o,i,a,s){var u,c,l,f,d,h,p,m,g,y=s.bits,v=0,_=0,b=0,w=0,S=0,x=0,k=0,E=0,A=0,C=0,O=null,R=0,N=new Vi.Buf16(16),I=new Vi.Buf16(16),P=null,T=0;for(v=0;v<=15;v++)N[v]=0;for(_=0;_<r;_++)N[t[n+_]]++;for(S=y,w=15;w>=1&&0===N[w];w--);if(S>w&&(S=w),0===w)return o[i++]=20971520,o[i++]=20971520,s.bits=1,0;for(b=1;b<w&&0===N[b];b++);for(S<b&&(S=b),E=1,v=1;v<=15;v++)if(E<<=1,(E-=N[v])<0)return-1;if(E>0&&(0===e||1!==w))return-1;for(I[1]=0,v=1;v<15;v++)I[v+1]=I[v]+N[v];for(_=0;_<r;_++)0!==t[n+_]&&(a[I[t[n+_]]++]=_);if(0===e?(O=P=a,h=19):1===e?(O=$i,R-=257,P=Ji,T-=257,h=256):(O=Ki,P=Yi,h=-1),C=0,_=0,v=b,d=i,x=S,k=0,l=-1,f=(A=1<<S)-1,1===e&&A>852||2===e&&A>592)return 1;for(;;){p=v-k,a[_]<h?(m=0,g=a[_]):a[_]>h?(m=P[T+a[_]],g=O[R+a[_]]):(m=96,g=0),u=1<<v-k,b=c=1<<x;do{o[d+(C>>k)+(c-=u)]=p<<24|m<<16|g|0}while(0!==c);for(u=1<<v-1;C&u;)u>>=1;if(0!==u?(C&=u-1,C+=u):C=0,_++,0==--N[v]){if(v===w)break;v=t[n+a[_]]}if(v>S&&(C&f)!==l){for(0===k&&(k=S),d+=b,E=1<<(x=v-k);x+k<w&&!((E-=N[x+k])<=0);)x++,E<<=1;if(A+=1<<x,1===e&&A>852||2===e&&A>592)return 1;o[l=C&f]=S<<24|x<<16|d-i|0}}return 0!==C&&(o[d+C]=v-k<<24|64<<16|0),s.bits=S,0},na=0,ra=-2,oa=1,ia=12,aa=30,sa=852,ua=592;function ca(e){return(e>>>24&255)+(e>>>8&65280)+((65280&e)<<8)+((255&e)<<24)}function la(){this.mode=0,this.last=!1,this.wrap=0,this.havedict=!1,this.flags=0,this.dmax=0,this.check=0,this.total=0,this.head=null,this.wbits=0,this.wsize=0,this.whave=0,this.wnext=0,this.window=null,this.hold=0,this.bits=0,this.length=0,this.offset=0,this.extra=0,this.lencode=null,this.distcode=null,this.lenbits=0,this.distbits=0,this.ncode=0,this.nlen=0,this.ndist=0,this.have=0,this.next=null,this.lens=new Zi.Buf16(320),this.work=new Zi.Buf16(288),this.lendyn=null,this.distdyn=null,this.sane=0,this.back=0,this.was=0}function fa(e){var t;return e&&e.state?(e.total_in=e.total_out=(t=e.state).total=0,e.msg="",t.wrap&&(e.adler=1&t.wrap),t.mode=oa,t.last=0,t.havedict=0,t.dmax=32768,t.head=null,t.hold=0,t.bits=0,t.lencode=t.lendyn=new Zi.Buf32(sa),t.distcode=t.distdyn=new Zi.Buf32(ua),t.sane=1,t.back=-1,na):ra}function da(e){var t;return e&&e.state?((t=e.state).wsize=0,t.whave=0,t.wnext=0,fa(e)):ra}function ha(e,t){var n,r;return e&&e.state?(t<0?(n=0,t=-t):(n=1+(t>>4),t<48&&(t&=15)),t&&(t<8||t>15)?ra:(null!==(r=e.state).window&&r.wbits!==t&&(r.window=null),r.wrap=n,r.wbits=t,da(e))):ra}function pa(e,t){var n,r;return e?(r=new la,e.state=r,r.window=null,(n=ha(e,t))!==na&&(e.state=null),n):ra}var ma,ga,ya=!0;function va(e){if(ya){var t;for(ma=new Zi.Buf32(512),ga=new Zi.Buf32(32),t=0;t<144;)e.lens[t++]=8;for(;t<256;)e.lens[t++]=9;for(;t<280;)e.lens[t++]=7;for(;t<288;)e.lens[t++]=8;for(ta(1,e.lens,0,288,ma,0,e.work,{bits:9}),t=0;t<32;)e.lens[t++]=5;ta(2,e.lens,0,32,ga,0,e.work,{bits:5}),ya=!1}e.lencode=ma,e.lenbits=9,e.distcode=ga,e.distbits=5}function _a(e,t,n,r){var o,i=e.state;return null===i.window&&(i.wsize=1<<i.wbits,i.wnext=0,i.whave=0,i.window=new Zi.Buf8(i.wsize)),r>=i.wsize?(Zi.arraySet(i.window,t,n-i.wsize,i.wsize,0),i.wnext=0,i.whave=i.wsize):((o=i.wsize-i.wnext)>r&&(o=r),Zi.arraySet(i.window,t,n-r,o,i.wnext),(r-=o)?(Zi.arraySet(i.window,t,n-r,r,0),i.wnext=r,i.whave=i.wsize):(i.wnext+=o,i.wnext===i.wsize&&(i.wnext=0),i.whave<i.wsize&&(i.whave+=o))),0}Wi.inflateReset=da,Wi.inflateReset2=ha,Wi.inflateResetKeep=fa,Wi.inflateInit=function(e){return pa(e,15)},Wi.inflateInit2=pa,Wi.inflate=function(e,t){var n,r,o,i,a,s,u,c,l,f,d,h,p,m,g,y,v,_,b,w,S,x,k,E,A=0,C=new Zi.Buf8(4),O=[16,17,18,0,8,7,9,6,10,5,11,4,12,3,13,2,14,1,15];if(!e||!e.state||!e.output||!e.input&&0!==e.avail_in)return ra;(n=e.state).mode===ia&&(n.mode=13),a=e.next_out,o=e.output,i=e.next_in,r=e.input,c=n.hold,l=n.bits,f=s=e.avail_in,d=u=e.avail_out,x=na;e:for(;;)switch(n.mode){case oa:if(0===n.wrap){n.mode=13;break}for(;l<16;){if(0===s)break e;s--,c+=r[i++]<<l,l+=8}if(2&n.wrap&&35615===c){n.check=0,C[0]=255&c,C[1]=c>>>8&255,n.check=Qi(n.check,C,2,0),c=0,l=0,n.mode=2;break}if(n.flags=0,n.head&&(n.head.done=!1),!(1&n.wrap)||(((255&c)<<8)+(c>>8))%31){e.msg="incorrect header check",n.mode=aa;break}if(8!=(15&c)){e.msg="unknown compression method",n.mode=aa;break}if(l-=4,S=8+(15&(c>>>=4)),0===n.wbits)n.wbits=S;else if(S>n.wbits){e.msg="invalid window size",n.mode=aa;break}n.dmax=1<<S,e.adler=n.check=1,n.mode=512&c?10:ia,c=0,l=0;break;case 2:for(;l<16;){if(0===s)break e;s--,c+=r[i++]<<l,l+=8}if(n.flags=c,8!=(255&n.flags)){e.msg="unknown compression method",n.mode=aa;break}if(57344&n.flags){e.msg="unknown header flags set",n.mode=aa;break}n.head&&(n.head.text=c>>8&1),512&n.flags&&(C[0]=255&c,C[1]=c>>>8&255,n.check=Qi(n.check,C,2,0)),c=0,l=0,n.mode=3;case 3:for(;l<32;){if(0===s)break e;s--,c+=r[i++]<<l,l+=8}n.head&&(n.head.time=c),512&n.flags&&(C[0]=255&c,C[1]=c>>>8&255,C[2]=c>>>16&255,C[3]=c>>>24&255,n.check=Qi(n.check,C,4,0)),c=0,l=0,n.mode=4;case 4:for(;l<16;){if(0===s)break e;s--,c+=r[i++]<<l,l+=8}n.head&&(n.head.xflags=255&c,n.head.os=c>>8),512&n.flags&&(C[0]=255&c,C[1]=c>>>8&255,n.check=Qi(n.check,C,2,0)),c=0,l=0,n.mode=5;case 5:if(1024&n.flags){for(;l<16;){if(0===s)break e;s--,c+=r[i++]<<l,l+=8}n.length=c,n.head&&(n.head.extra_len=c),512&n.flags&&(C[0]=255&c,C[1]=c>>>8&255,n.check=Qi(n.check,C,2,0)),c=0,l=0}else n.head&&(n.head.extra=null);n.mode=6;case 6:if(1024&n.flags&&((h=n.length)>s&&(h=s),h&&(n.head&&(S=n.head.extra_len-n.length,n.head.extra||(n.head.extra=new Array(n.head.extra_len)),Zi.arraySet(n.head.extra,r,i,h,S)),512&n.flags&&(n.check=Qi(n.check,r,h,i)),s-=h,i+=h,n.length-=h),n.length))break e;n.length=0,n.mode=7;case 7:if(2048&n.flags){if(0===s)break e;h=0;do{S=r[i+h++],n.head&&S&&n.length<65536&&(n.head.name+=String.fromCharCode(S))}while(S&&h<s);if(512&n.flags&&(n.check=Qi(n.check,r,h,i)),s-=h,i+=h,S)break e}else n.head&&(n.head.name=null);n.length=0,n.mode=8;case 8:if(4096&n.flags){if(0===s)break e;h=0;do{S=r[i+h++],n.head&&S&&n.length<65536&&(n.head.comment+=String.fromCharCode(S))}while(S&&h<s);if(512&n.flags&&(n.check=Qi(n.check,r,h,i)),s-=h,i+=h,S)break e}else n.head&&(n.head.comment=null);n.mode=9;case 9:if(512&n.flags){for(;l<16;){if(0===s)break e;s--,c+=r[i++]<<l,l+=8}if(c!==(65535&n.check)){e.msg="header crc mismatch",n.mode=aa;break}c=0,l=0}n.head&&(n.head.hcrc=n.flags>>9&1,n.head.done=!0),e.adler=n.check=0,n.mode=ia;break;case 10:for(;l<32;){if(0===s)break e;s--,c+=r[i++]<<l,l+=8}e.adler=n.check=ca(c),c=0,l=0,n.mode=11;case 11:if(0===n.havedict)return e.next_out=a,e.avail_out=u,e.next_in=i,e.avail_in=s,n.hold=c,n.bits=l,2;e.adler=n.check=1,n.mode=ia;case ia:if(5===t||6===t)break e;case 13:if(n.last){c>>>=7&l,l-=7&l,n.mode=27;break}for(;l<3;){if(0===s)break e;s--,c+=r[i++]<<l,l+=8}switch(n.last=1&c,l-=1,3&(c>>>=1)){case 0:n.mode=14;break;case 1:if(va(n),n.mode=20,6===t){c>>>=2,l-=2;break e}break;case 2:n.mode=17;break;case 3:e.msg="invalid block type",n.mode=aa}c>>>=2,l-=2;break;case 14:for(c>>>=7&l,l-=7&l;l<32;){if(0===s)break e;s--,c+=r[i++]<<l,l+=8}if((65535&c)!=(c>>>16^65535)){e.msg="invalid stored block lengths",n.mode=aa;break}if(n.length=65535&c,c=0,l=0,n.mode=15,6===t)break e;case 15:n.mode=16;case 16:if(h=n.length){if(h>s&&(h=s),h>u&&(h=u),0===h)break e;Zi.arraySet(o,r,i,h,a),s-=h,i+=h,u-=h,a+=h,n.length-=h;break}n.mode=ia;break;case 17:for(;l<14;){if(0===s)break e;s--,c+=r[i++]<<l,l+=8}if(n.nlen=257+(31&c),l-=5,n.ndist=1+(31&(c>>>=5)),l-=5,n.ncode=4+(15&(c>>>=5)),c>>>=4,l-=4,n.nlen>286||n.ndist>30){e.msg="too many length or distance symbols",n.mode=aa;break}n.have=0,n.mode=18;case 18:for(;n.have<n.ncode;){for(;l<3;){if(0===s)break e;s--,c+=r[i++]<<l,l+=8}n.lens[O[n.have++]]=7&c,c>>>=3,l-=3}for(;n.have<19;)n.lens[O[n.have++]]=0;if(n.lencode=n.lendyn,n.lenbits=7,x=ta(0,n.lens,0,19,n.lencode,0,n.work,k={bits:n.lenbits}),n.lenbits=k.bits,x){e.msg="invalid code lengths set",n.mode=aa;break}n.have=0,n.mode=19;case 19:for(;n.have<n.nlen+n.ndist;){for(;y=(A=n.lencode[c&(1<<n.lenbits)-1])>>>16&255,v=65535&A,!((g=A>>>24)<=l);){if(0===s)break e;s--,c+=r[i++]<<l,l+=8}if(v<16)c>>>=g,l-=g,n.lens[n.have++]=v;else{if(16===v){for(E=g+2;l<E;){if(0===s)break e;s--,c+=r[i++]<<l,l+=8}if(c>>>=g,l-=g,0===n.have){e.msg="invalid bit length repeat",n.mode=aa;break}S=n.lens[n.have-1],h=3+(3&c),c>>>=2,l-=2}else if(17===v){for(E=g+3;l<E;){if(0===s)break e;s--,c+=r[i++]<<l,l+=8}l-=g,S=0,h=3+(7&(c>>>=g)),c>>>=3,l-=3}else{for(E=g+7;l<E;){if(0===s)break e;s--,c+=r[i++]<<l,l+=8}l-=g,S=0,h=11+(127&(c>>>=g)),c>>>=7,l-=7}if(n.have+h>n.nlen+n.ndist){e.msg="invalid bit length repeat",n.mode=aa;break}for(;h--;)n.lens[n.have++]=S}}if(n.mode===aa)break;if(0===n.lens[256]){e.msg="invalid code -- missing end-of-block",n.mode=aa;break}if(n.lenbits=9,x=ta(1,n.lens,0,n.nlen,n.lencode,0,n.work,k={bits:n.lenbits}),n.lenbits=k.bits,x){e.msg="invalid literal/lengths set",n.mode=aa;break}if(n.distbits=6,n.distcode=n.distdyn,x=ta(2,n.lens,n.nlen,n.ndist,n.distcode,0,n.work,k={bits:n.distbits}),n.distbits=k.bits,x){e.msg="invalid distances set",n.mode=aa;break}if(n.mode=20,6===t)break e;case 20:n.mode=21;case 21:if(s>=6&&u>=258){e.next_out=a,e.avail_out=u,e.next_in=i,e.avail_in=s,n.hold=c,n.bits=l,ea(e,d),a=e.next_out,o=e.output,u=e.avail_out,i=e.next_in,r=e.input,s=e.avail_in,c=n.hold,l=n.bits,n.mode===ia&&(n.back=-1);break}for(n.back=0;y=(A=n.lencode[c&(1<<n.lenbits)-1])>>>16&255,v=65535&A,!((g=A>>>24)<=l);){if(0===s)break e;s--,c+=r[i++]<<l,l+=8}if(y&&0==(240&y)){for(_=g,b=y,w=v;y=(A=n.lencode[w+((c&(1<<_+b)-1)>>_)])>>>16&255,v=65535&A,!(_+(g=A>>>24)<=l);){if(0===s)break e;s--,c+=r[i++]<<l,l+=8}c>>>=_,l-=_,n.back+=_}if(c>>>=g,l-=g,n.back+=g,n.length=v,0===y){n.mode=26;break}if(32&y){n.back=-1,n.mode=ia;break}if(64&y){e.msg="invalid literal/length code",n.mode=aa;break}n.extra=15&y,n.mode=22;case 22:if(n.extra){for(E=n.extra;l<E;){if(0===s)break e;s--,c+=r[i++]<<l,l+=8}n.length+=c&(1<<n.extra)-1,c>>>=n.extra,l-=n.extra,n.back+=n.extra}n.was=n.length,n.mode=23;case 23:for(;y=(A=n.distcode[c&(1<<n.distbits)-1])>>>16&255,v=65535&A,!((g=A>>>24)<=l);){if(0===s)break e;s--,c+=r[i++]<<l,l+=8}if(0==(240&y)){for(_=g,b=y,w=v;y=(A=n.distcode[w+((c&(1<<_+b)-1)>>_)])>>>16&255,v=65535&A,!(_+(g=A>>>24)<=l);){if(0===s)break e;s--,c+=r[i++]<<l,l+=8}c>>>=_,l-=_,n.back+=_}if(c>>>=g,l-=g,n.back+=g,64&y){e.msg="invalid distance code",n.mode=aa;break}n.offset=v,n.extra=15&y,n.mode=24;case 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16:if(n.avail_in){e.next=5;break}case 17:for(c=new Uint8Array(a),l=0,f=0;l<i.length;l++)c.set(i[l],f),f+=i[l].length;return e.abrupt("return",Xt.from(c));case 22:if(e.prev=22,e.t0=e.catch(0),!"".concat(e.t0).match(/incorrect header check/)){e.next=26;break}throw new Error("problem decompressing block: incorrect gzip header check");case 26:throw e.t0;case 27:case"end":return e.stop()}}),e,null,[[0,22]])}))),Ma.apply(this,arguments)}var ja=null;try{ja=new WebAssembly.Instance(new WebAssembly.Module(new Uint8Array([0,97,115,109,1,0,0,0,1,13,2,96,0,1,127,96,4,127,127,127,127,1,127,3,7,6,0,1,1,1,1,1,6,6,1,127,1,65,0,11,7,50,6,3,109,117,108,0,1,5,100,105,118,95,115,0,2,5,100,105,118,95,117,0,3,5,114,101,109,95,115,0,4,5,114,101,109,95,117,0,5,8,103,101,116,95,104,105,103,104,0,0,10,191,1,6,4,0,35,0,11,36,1,1,126,32,0,173,32,1,173,66,32,134,132,32,2,173,32,3,173,66,32,134,132,126,34,4,66,32,135,167,36,0,32,4,167,11,36,1,1,126,32,0,173,32,1,173,66,32,134,132,32,2,173,32,3,173,66,32,134,132,127,34,4,66,32,135,167,36,0,32,4,167,11,36,1,1,126,32,0,173,32,1,173,66,32,134,132,32,2,173,32,3,173,66,32,134,132,128,34,4,66,32,135,167,36,0,32,4,167,11,36,1,1,126,32,0,173,32,1,173,66,32,134,132,32,2,173,32,3,173,66,32,134,132,129,34,4,66,32,135,167,36,0,32,4,167,11,36,1,1,126,32,0,173,32,1,173,66,32,134,132,32,2,173,32,3,173,66,32,134,132,130,34,4,66,32,135,167,36,0,32,4,167,11])),{}).exports}catch(Su){}function Fa(e,t,n){this.low=0|e,this.high=0|t,this.unsigned=!!n}function La(e){return!0===(e&&e.__isLong__)}function Da(e){var t=Math.clz32(e&-e);return e?31-t:t}Object.defineProperty(Fa.prototype,"__isLong__",{value:!0}),Fa.isLong=La;var qa={},Ba={};function Ua(e,t){var n,r,o;return t?(o=0<=(e>>>=0)&&e<256)&&(r=Ba[e])?r:(n=Ga(e,0,!0),o&&(Ba[e]=n),n):(o=-128<=(e|=0)&&e<128)&&(r=qa[e])?r:(n=Ga(e,e<0?-1:0,!1),o&&(qa[e]=n),n)}function za(e,t){if(isNaN(e))return t?Xa:Za;if(t){if(e<0)return Xa;if(e>=Ja)return rs}else{if(e<=-Ka)return os;if(e+1>=Ka)return ns}return e<0?za(-e,t).neg():Ga(e%$a|0,e/$a|0,t)}function Ga(e,t,n){return new Fa(e,t,n)}Fa.fromInt=Ua,Fa.fromNumber=za,Fa.fromBits=Ga;var Ha=Math.pow;function Wa(e,t,n){if(0===e.length)throw Error("empty string");if("number"==typeof t?(n=t,t=!1):t=!!t,"NaN"===e||"Infinity"===e||"+Infinity"===e||"-Infinity"===e)return t?Xa:Za;if((n=n||10)<2||36<n)throw RangeError("radix");var r;if((r=e.indexOf("-"))>0)throw Error("interior hyphen");if(0===r)return Wa(e.substring(1),t,n).neg();for(var o=za(Ha(n,8)),i=Za,a=0;a<e.length;a+=8){var s=Math.min(8,e.length-a),u=parseInt(e.substring(a,a+s),n);if(s<8){var c=za(Ha(n,s));i=i.mul(c).add(za(u))}else i=(i=i.mul(o)).add(za(u))}return i.unsigned=t,i}function Va(e,t){return"number"==typeof e?za(e,t):"string"==typeof e?Wa(e,t):Ga(e.low,e.high,"boolean"==typeof t?t:e.unsigned)}Fa.fromString=Wa,Fa.fromValue=Va;var $a=4294967296,Ja=$a*$a,Ka=Ja/2,Ya=Ua(16777216),Za=Ua(0);Fa.ZERO=Za;var Xa=Ua(0,!0);Fa.UZERO=Xa;var Qa=Ua(1);Fa.ONE=Qa;var es=Ua(1,!0);Fa.UONE=es;var ts=Ua(-1);Fa.NEG_ONE=ts;var ns=Ga(-1,2147483647,!1);Fa.MAX_VALUE=ns;var rs=Ga(-1,-1,!0);Fa.MAX_UNSIGNED_VALUE=rs;var os=Ga(0,-2147483648,!1);Fa.MIN_VALUE=os;var is=Fa.prototype;is.toInt=function(){return this.unsigned?this.low>>>0:this.low},is.toNumber=function(){return this.unsigned?(this.high>>>0)*$a+(this.low>>>0):this.high*$a+(this.low>>>0)},is.toString=function(e){if((e=e||10)<2||36<e)throw 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1==(1&this.low)},is.isEven=function(){return 0==(1&this.low)},is.equals=function(e){return La(e)||(e=Va(e)),(this.unsigned===e.unsigned||this.high>>>31!=1||e.high>>>31!=1)&&this.high===e.high&&this.low===e.low},is.eq=is.equals,is.notEquals=function(e){return!this.eq(e)},is.neq=is.notEquals,is.ne=is.notEquals,is.lessThan=function(e){return this.comp(e)<0},is.lt=is.lessThan,is.lessThanOrEqual=function(e){return this.comp(e)<=0},is.lte=is.lessThanOrEqual,is.le=is.lessThanOrEqual,is.greaterThan=function(e){return this.comp(e)>0},is.gt=is.greaterThan,is.greaterThanOrEqual=function(e){return this.comp(e)>=0},is.gte=is.greaterThanOrEqual,is.ge=is.greaterThanOrEqual,is.compare=function(e){if(La(e)||(e=Va(e)),this.eq(e))return 0;var t=this.isNegative(),n=e.isNegative();return t&&!n?-1:!t&&n?1:this.unsigned?e.high>>>0>this.high>>>0||e.high===this.high&&e.low>>>0>this.low>>>0?-1:1:this.sub(e).isNegative()?-1:1},is.comp=is.compare,is.negate=function(){return!this.unsigned&&this.eq(os)?os:this.not().add(Qa)},is.neg=is.negate,is.add=function(e){La(e)||(e=Va(e));var t=0,n=0,r=0,o=0;return r+=(o+=(65535&this.low)+(65535&e.low))>>>16,n+=(r+=(this.low>>>16)+(e.low>>>16))>>>16,t+=(n+=(65535&this.high)+(65535&e.high))>>>16,t+=(this.high>>>16)+(e.high>>>16),Ga((r&=65535)<<16|(o&=65535),(t&=65535)<<16|(n&=65535),this.unsigned)},is.subtract=function(e){return La(e)||(e=Va(e)),this.add(e.neg())},is.sub=is.subtract,is.multiply=function(e){if(this.isZero())return this;if(La(e)||(e=Va(e)),ja)return Ga(ja.mul(this.low,this.high,e.low,e.high),ja.get_high(),this.unsigned);if(e.isZero())return this.unsigned?Xa:Za;if(this.eq(os))return e.isOdd()?os:Za;if(e.eq(os))return this.isOdd()?os:Za;if(this.isNegative())return e.isNegative()?this.neg().mul(e.neg()):this.neg().mul(e).neg();if(e.isNegative())return this.mul(e.neg()).neg();if(this.lt(Ya)&&e.lt(Ya))return za(this.toNumber()*e.toNumber(),this.unsigned);var t=65535&this.high,n=this.low>>>16,r=65535&this.low,o=65535&e.high,i=e.low>>>16,a=65535&e.low,s=0,u=0,c=0,l=0;return c+=(l+=r*a)>>>16,u+=(c+=n*a)>>>16,c&=65535,u+=(c+=r*i)>>>16,s+=(u+=t*a)>>>16,u&=65535,s+=(u+=n*i)>>>16,u&=65535,s+=(u+=r*o)>>>16,s+=(this.high>>>16)*a+t*i+n*o+r*(e.high>>>16),Ga((c&=65535)<<16|(l&=65535),(s&=65535)<<16|(u&=65535),this.unsigned)},is.mul=is.multiply,is.divide=function(e){if(La(e)||(e=Va(e)),e.isZero())throw Error("division by zero");var t,n,r;if(ja)return this.unsigned||-2147483648!==this.high||-1!==e.low||-1!==e.high?Ga((this.unsigned?ja.div_u:ja.div_s)(this.low,this.high,e.low,e.high),ja.get_high(),this.unsigned):this;if(this.isZero())return this.unsigned?Xa:Za;if(this.unsigned){if(e.unsigned||(e=e.toUnsigned()),e.gt(this))return Xa;if(e.gt(this.shru(1)))return es;r=Xa}else{if(this.eq(os))return e.eq(Qa)||e.eq(ts)?os:e.eq(os)?Qa:(t=this.shr(1).div(e).shl(1)).eq(Za)?e.isNegative()?Qa:ts:(n=this.sub(e.mul(t)),r=t.add(n.div(e)));if(e.eq(os))return this.unsigned?Xa:Za;if(this.isNegative())return e.isNegative()?this.neg().div(e.neg()):this.neg().div(e).neg();if(e.isNegative())return this.div(e.neg()).neg();r=Za}for(n=this;n.gte(e);){t=Math.max(1,Math.floor(n.toNumber()/e.toNumber()));for(var o=Math.ceil(Math.log(t)/Math.LN2),i=o<=48?1:Ha(2,o-48),a=za(t),s=a.mul(e);s.isNegative()||s.gt(n);)s=(a=za(t-=i,this.unsigned)).mul(e);a.isZero()&&(a=Qa),r=r.add(a),n=n.sub(s)}return r},is.div=is.divide,is.modulo=function(e){return La(e)||(e=Va(e)),ja?Ga((this.unsigned?ja.rem_u:ja.rem_s)(this.low,this.high,e.low,e.high),ja.get_high(),this.unsigned):this.sub(this.div(e).mul(e))},is.mod=is.modulo,is.rem=is.modulo,is.not=function(){return Ga(~this.low,~this.high,this.unsigned)},is.countLeadingZeros=function(){return this.high?Math.clz32(this.high):Math.clz32(this.low)+32},is.clz=is.countLeadingZeros,is.countTrailingZeros=function(){return this.low?Da(this.low):Da(this.high)+32},is.ctz=is.countTrailingZeros,is.and=function(e){return La(e)||(e=Va(e)),Ga(this.low&e.low,this.high&e.high,this.unsigned)},is.or=function(e){return La(e)||(e=Va(e)),Ga(this.low|e.low,this.high|e.high,this.unsigned)},is.xor=function(e){return La(e)||(e=Va(e)),Ga(this.low^e.low,this.high^e.high,this.unsigned)},is.shiftLeft=function(e){return La(e)&&(e=e.toInt()),0==(e&=63)?this:e<32?Ga(this.low<<e,this.high<<e|this.low>>>32-e,this.unsigned):Ga(0,this.low<<e-32,this.unsigned)},is.shl=is.shiftLeft,is.shiftRight=function(e){return La(e)&&(e=e.toInt()),0==(e&=63)?this:e<32?Ga(this.low>>>e|this.high<<32-e,this.high>>e,this.unsigned):Ga(this.high>>e-32,this.high>=0?0:-1,this.unsigned)},is.shr=is.shiftRight,is.shiftRightUnsigned=function(e){return La(e)&&(e=e.toInt()),0==(e&=63)?this:e<32?Ga(this.low>>>e|this.high<<32-e,this.high>>>e,this.unsigned):Ga(32===e?this.high:this.high>>>e-32,0,this.unsigned)},is.shru=is.shiftRightUnsigned,is.shr_u=is.shiftRightUnsigned,is.rotateLeft=function(e){var t;return La(e)&&(e=e.toInt()),0==(e&=63)?this:32===e?Ga(this.high,this.low,this.unsigned):e<32?Ga(this.low<<e|this.high>>>(t=32-e),this.high<<e|this.low>>>t,this.unsigned):Ga(this.high<<(e-=32)|this.low>>>(t=32-e),this.low<<e|this.high>>>t,this.unsigned)},is.rotl=is.rotateLeft,is.rotateRight=function(e){var t;return La(e)&&(e=e.toInt()),0==(e&=63)?this:32===e?Ga(this.high,this.low,this.unsigned):e<32?Ga(this.high<<(t=32-e)|this.low>>>e,this.low<<t|this.high>>>e,this.unsigned):Ga(this.low<<(t=32-(e-=32))|this.high>>>e,this.high<<t|this.low>>>e,this.unsigned)},is.rotr=is.rotateRight,is.toSigned=function(){return this.unsigned?Ga(this.low,this.high,!1):this},is.toUnsigned=function(){return 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0!==arguments[1]?arguments[1]:0,n=!(arguments.length>2&&void 0!==arguments[2])||arguments[2],r=Fa.fromBytesLE(e.slice(t,t+8),n);if(r.greaterThan(Number.MAX_SAFE_INTEGER)||r.lessThan(Number.MIN_SAFE_INTEGER))throw new TypeError("integer overflow");return r.toNumber()}},{key:"_getIndex",value:function(){return this.index||(this.index=this._readIndex()),this.index}},{key:"_readIndex",value:(r=Q(Y().mark((function e(){var t,n,r,o,i,a,s;return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return t=Xt.allocUnsafe(8),e.next=3,this.filehandle.read(t,0,8,0);case 3:if(n=this._readLongWithOverflow(t,0,!0)){e.next=6;break}return e.abrupt("return",[[0,0]]);case 6:if((r=new Array(n+1))[0]=[0,0],!((o=16*n)>Number.MAX_SAFE_INTEGER)){e.next=11;break}throw new TypeError("integer overflow");case 11:return t=Xt.allocUnsafe(o),e.next=14,this.filehandle.read(t,0,o,8);case 14:for(i=0;i<n;i+=1)a=this._readLongWithOverflow(t,16*i),s=this._readLongWithOverflow(t,16*i+8),r[i+1]=[a,s];return e.abrupt("return",r);case 16:case"end":return e.stop()}}),e,this)}))),function(){return r.apply(this,arguments)})},{key:"getLastBlock",value:(n=Q(Y().mark((function e(){var t;return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return e.next=2,this._getIndex();case 2:if((t=e.sent).length){e.next=5;break}return e.abrupt("return",void 0);case 5:return e.abrupt("return",t[t.length-1]);case 6:case"end":return e.stop()}}),e,this)}))),function(){return n.apply(this,arguments)})},{key:"getRelevantBlocksForRead",value:(t=Q(Y().mark((function e(t,n){var r,o,i,a,s,u,c,l,f;return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:if(r=n+t,0!==t){e.next=3;break}return e.abrupt("return",[]);case 3:return e.next=5,this._getIndex();case 5:for(i=[],a=function(e,t){var r=e[1];return r<=n&&(t?t[1]:Infinity)>n?0:r<n?-1:1},s=0,u=(o=e.sent).length-1,c=Math.floor(o.length/2),l=a(o[c],o[c+1]);0!==l;)l>0?u=c-1:l<0&&(s=c+1),c=Math.ceil((u-s)/2)+s,l=a(o[c],o[c+1]);i.push(o[c]),f=c+1;case 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0,e.t5={size:e.t2,blocks:e.t3,blksize:e.t4},e.abrupt("return",e.t0.assign.call(e.t0,e.t1,e.t5));case 12:case"end":return e.stop()}}),e,this)}))),function(){return o.apply(this,arguments)})},{key:"getUncompressedFileSize",value:(r=Q(Y().mark((function e(){var t,n,r,o,i;return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return e.next=2,this.gzi.getLastBlock();case 2:return t=he(e.sent,2),n=t[1],e.next=7,this.filehandle.stat();case 7:return r=e.sent.size,o=Xt.allocUnsafe(4),e.next=12,this.filehandle.read(o,0,4,r-28-4);case 12:if(4===e.sent.bytesRead){e.next=16;break}throw new Error("read error");case 16:return i=o.readUInt32LE(0),e.abrupt("return",n+i);case 18:case"end":return e.stop()}}),e,this)}))),function(){return r.apply(this,arguments)})},{key:"_readAndUncompressBlock",value:(n=Q(Y().mark((function e(t,n,r){var o,i,a;return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:if(o=he(n,1)[0],i=he(r,1)[0]){e.next=7;break}return e.next=6,this.filehandle.stat();case 6:i=e.sent.size;case 7:return a=i-o,e.next=10,this.filehandle.read(t,0,a,o);case 10:return e.next=12,Ta(t.slice(0,a));case 12:return e.abrupt("return",e.sent);case 14:case"end":return e.stop()}}),e,this)}))),function(e,t,r){return n.apply(this,arguments)})},{key:"read",value:(t=Q(Y().mark((function e(t,n,r,o){var i,a,s,u,c,l,f,d,h,p;return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return e.next=2,this.gzi.getRelevantBlocksForRead(r,o);case 2:i=e.sent,a=Xt.allocUnsafe(65536),s=n,u=0,c=0;case 7:if(!(c<i.length-1)){e.next=18;break}return e.next=10,this._readAndUncompressBlock(a,i[c],i[c+1]);case 10:l=e.sent,f=he(i[c],2),h=(d=f[1])>=o?0:o-d,p=Math.min(o+r,d+l.length)-d,h>=0&&h<l.length&&(l.copy(t,s,h,p),s+=p-h,u+=p-h);case 15:c+=1,e.next=7;break;case 18:return e.abrupt("return",{bytesRead:u,buffer:t});case 19:case"end":return e.stop()}}),e,this)}))),function(e,n,r,o){return t.apply(this,arguments)})}]),e}();function us(e,t){return e.offset+e.lineBytes*Math.floor(t/e.lineLength)+t%e.lineLength}function cs(e,t){return ls.apply(this,arguments)}function ls(){return(ls=Q(Y().mark((function e(t,n){var r,o,i,a;return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return e.next=2,t.readFile(n);case 2:if((r=e.sent)&&r.length){e.next=5;break}throw new Error("No data read from FASTA index (FAI) file");case 5:return o=0,a=r.toString("utf8").split(/\r?\n/).filter((function(e){return/\S/.test(e)})).map((function(e){return e.split("\t")})).filter((function(e){return""!==e[0]})).map((function(e){return i&&i.name===e[0]||(i={name:e[0],id:o},o+=1),{id:i.id,name:e[0],length:+e[1],start:0,end:+e[1],offset:+e[2],lineLength:+e[3],lineBytes:+e[4]}})),e.abrupt("return",{name:Object.fromEntries(a.map((function(e){return[e.name,e]}))),id:Object.fromEntries(a.map((function(e){return[e.id,e]})))});case 8:case"end":return e.stop()}}),e)})))).apply(this,arguments)}var fs=function(){function e(t){var n=t.fasta,r=t.fai,o=t.path,i=t.faiPath;if(ee(this,e),n)this.fasta=n;else{if(!o)throw new Error("Need to pass filehandle for fasta or path to localfile");this.fasta=new Br(o)}if(r)this.fai=r;else if(i)this.fai=new Br(i);else{if(!o)throw new Error("Need to pass filehandle for  or path to localfile");this.fai=new Br("".concat(o,".fai"))}}var t,n,r,o,i,a,s,u,c;return ne(e,[{key:"_getIndexes",value:(c=Q(Y().mark((function e(t){return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return this.indexes||(this.indexes=cs(this.fai,t)),e.abrupt("return",this.indexes);case 2:case"end":return e.stop()}}),e,this)}))),function(e){return c.apply(this,arguments)})},{key:"getSequenceNames",value:(u=Q(Y().mark((function e(t){return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return e.t0=Object,e.next=3,this._getIndexes(t);case 3:return e.t1=e.sent.name,e.abrupt("return",e.t0.keys.call(e.t0,e.t1));case 5:case"end":return e.stop()}}),e,this)}))),function(e){return u.apply(this,arguments)})},{key:"getSequenceSizes",value:(s=Q(Y().mark((function e(t){var n,r,o;return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return n={},e.next=3,this._getIndexes(t);case 3:for(r=Object.values(e.sent.id),o=0;o<r.length;o+=1)n[r[o].name]=r[o].length;return e.abrupt("return",n);case 7:case"end":return e.stop()}}),e,this)}))),function(e){return s.apply(this,arguments)})},{key:"getSequenceSize",value:(a=Q(Y().mark((function e(t,n){var r;return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return e.next=2,this._getIndexes(n);case 2:return e.abrupt("return",null===(r=e.sent.name[t])||void 0===r?void 0:r.length);case 4:case"end":return e.stop()}}),e,this)}))),function(e,t){return a.apply(this,arguments)})},{key:"hasReferenceSequence",value:(i=Q(Y().mark((function e(t,n){return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return e.next=2,this._getIndexes(n);case 2:return e.t0=t,e.abrupt("return",!!e.sent.name[e.t0]);case 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e(t,n,r,o){return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return e.abrupt("return",this.getResiduesByName(t,n,r,o));case 1:case"end":return e.stop()}}),e,this)}))),function(e,t,r,o){return n.apply(this,arguments)})},{key:"_fetchFromIndexEntry",value:(t=Q(Y().mark((function e(t){var n,r,o,i,a,s,u=arguments;return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:if(r=u.length>3?u[3]:void 0,o=u.length>2?u[2]:void 0,!((n=u.length>1&&void 0!==u[1]?u[1]:0)<0)){e.next=6;break}throw new TypeError("regionStart cannot be less than 0");case 6:if((void 0===o||o>t.length)&&(o=t.length),!(n>=o)){e.next=9;break}return e.abrupt("return","");case 9:return i=us(t,n),a=us(t,o)-i,s=Xt.allocUnsafe(a),e.next=14,this.fasta.read(s,0,a,i,r);case 14:return e.abrupt("return",s.toString("utf8").replace(/\s+/g,""));case 15:case"end":return e.stop()}}),e,this)}))),function(e){return t.apply(this,arguments)})}]),e}(),ds=function(e){oe(n,e);var t=fe(n);function n(e){var r,o=e.fasta,i=e.path,a=e.fai,s=e.faiPath,u=e.gzi,c=e.gziPath;return ee(this,n),r=t.call(this,{fasta:o,path:i,fai:a,faiPath:s}),o&&u?r.fasta=new ss({filehandle:o,gziFilehandle:u}):i&&c&&(r.fasta=new ss({path:i,gziPath:c})),r}return ne(n)}(fs);function hs(e){return e.split(">").filter((function(e){return/\S/.test(e)})).map((function(e){var t=pe(e.split("\n")),n=t[0],r=t.slice(1),o=pe(n.split(" ")),i=o[0],a=o.slice(1),s=r.join("").replace(/\s/g,"");return{id:i,description:a.join(" "),sequence:s}}))}var ps=function(){function e(t){var n=t.fasta,r=t.path;if(ee(this,e),n)this.fasta=n;else{if(!r)throw new Error("Need to pass fasta or path");this.fasta=new Br(r)}this.data=this.fasta.readFile().then((function(e){return hs(e.toString("utf8"))}))}var t,n;return ne(e,[{key:"fetch",value:(n=Q(Y().mark((function e(t,n,r){var o,i;return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return e.next=2,this.data;case 2:if(o=e.sent.find((function(e){return e.id===t})),i=r-n,o){e.next=7;break}throw new Error("no sequence with id ".concat(t," exists"));case 7:return e.abrupt("return",o.sequence.substr(n,i));case 8:case"end":return e.stop()}}),e,this)}))),function(e,t,r){return n.apply(this,arguments)})},{key:"getSequenceNames",value:(t=Q(Y().mark((function e(){return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return e.next=2,this.data;case 2:return e.abrupt("return",e.sent.map((function(e){return e.id})));case 4:case"end":return e.stop()}}),e,this)}))),function(){return t.apply(this,arguments)})}]),e}(),ms=B({__proto__:null,parseSmallFasta:hs,FetchableSmallFasta:ps,IndexedFasta:fs,BgzipIndexedFasta:ds}),gs=B(Vr);Object.defineProperty(qr,"__esModule",{value:!0}),qr.AddAssemblyFromExternalChange=void 0;var ys=ms,vs=gs,_s=function(e){oe(i,e);var t,n,r,o=fe(i);function i(e,t){var n;return ee(this,i),re(le(n=o.call(this,e,t)),"typeName","AddAssemblyFromExternalChange"),re(le(n),"changes",void 0),n.changes="changes"in e?e.changes:[e],n}return ne(i,[{key:"notification",get:function(){return'Assembly "'.concat(this.changes[0].assemblyName,'" added successfully. To use it, please refresh the page.')}},{key:"toJSON",value:function(){var e=this.assembly,t=this.changes,n=this.typeName;if(1===t.length){var r=he(t,1)[0];return{typeName:n,assembly:e,assemblyName:r.assemblyName,externalLocation:r.externalLocation}}return{typeName:n,assembly:e,changes:t}}},{key:"executeOnServer",value:(r=Q(Y().mark((function e(t){var n,r,o,i,a,s,u,c,l,f,d,h,p,m,g,y,v,_,b,w,S,x,k,E,A,C,O;return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:n=t.assemblyModel,r=t.checkModel,o=t.refSeqModel,i=t.user,a=this.assembly,s=this.changes,u=this.logger,l=(c=qt.env.CHUNK_SIZE)&&Number(c),f=we(s),e.prev=5,f.s();case 7:if((d=f.n()).done){e.next=45;break}return m=(p=d.value).assemblyName,y=(g=p.externalLocation).fa,v=g.fai,b=(_=g.gzi)?new ys.BgzipIndexedFasta({fasta:new vs.RemoteFile(y,{fetch:fetch}),fai:new vs.RemoteFile(v,{fetch:fetch}),gzi:new vs.RemoteFile(_,{fetch:fetch})}):new ys.IndexedFasta({fasta:new vs.RemoteFile(y,{fetch:fetch}),fai:new vs.RemoteFile(v,{fetch:fetch})}),e.next=14,b.getSequenceSizes();case 14:if(w=e.sent){e.next=17;break}throw new Error("No data read from indexed fasta getSequenceSizes");case 17:return e.next=19,n.findOne({name:m}).exec();case 19:if(!e.sent){e.next=22;break}throw new Error('Assembly "'.concat(m,'" already exists'));case 22:return e.next=24,r.find({default:!0}).exec();case 24:return S=e.sent.map((function(e){return e._id.toHexString()})),e.next=28,n.create([{_id:a,name:m,user:i,status:-1,externalLocation:g,checks:S}]);case 28:x=he(e.sent,1),k=x[0],null===(h=u.debug)||void 0===h||h.call(u,'Added new assembly "'.concat(m,'", docId "').concat(k._id,'"')),e.t0=Y().keys(w);case 33:if((e.t1=e.t0()).done){e.next=43;break}return E=e.t1.value,e.next=37,o.create([K(K({name:E,assembly:k._id,length:w[E]},l?{chunkSize:l}:null),{},{user:i,status:-1})]);case 37:C=he(e.sent,1),O=C[0],null===(A=u.debug)||void 0===A||A.call(u,'Added new refSeq "'.concat(E,'", docId "').concat(O._id,'"')),e.next=33;break;case 43:e.next=7;break;case 45:e.next=50;break;case 47:e.prev=47,e.t2=e.catch(5),f.e(e.t2);case 50:return e.prev=50,f.f(),e.finish(50);case 53:case"end":return e.stop()}}),e,this,[[5,47,50,53]])}))),function(e){return r.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(n=Q(Y().mark((function e(t){return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:throw new Error("executeOnLocalGFF3 not implemented");case 1:case"end":return e.stop()}}),e)}))),function(e){return n.apply(this,arguments)})},{key:"executeOnClient",value:(t=Q(Y().mark((function e(t){return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:case"end":return e.stop()}}),e)}))),function(e){return t.apply(this,arguments)})},{key:"getInverse",value:function(){return new i({typeName:this.typeName,changes:this.changes,assembly:this.assembly},{logger:this.logger})}}]),i}(ar.AssemblySpecificChange);qr.AddAssemblyFromExternalChange=_s;var bs={};Object.defineProperty(bs,"__esModule",{value:!0}),bs.AddAssemblyFromFileChange=void 0;var ws=ms,Ss=function(e){oe(s,e);var t,n,r,o,i,a=fe(s);function s(e,t){var n;return ee(this,s),re(le(n=a.call(this,e,t)),"typeName","AddAssemblyFromFileChange"),re(le(n),"changes",void 0),n.changes="changes"in e?e.changes:[e],n}return ne(s,[{key:"notification",get:function(){return'Assembly "'.concat(this.changes[0].assemblyName,'" added successfully. To use it, please refresh the page.')}},{key:"toJSON",value:function(){var e=this.assembly,t=this.changes,n=this.typeName;if(1===t.length){var r=he(t,1)[0];return{typeName:n,assembly:e,assemblyName:r.assemblyName,fileIds:r.fileIds}}return{typeName:n,assembly:e,changes:t}}},{key:"executeOnServer",value:(i=Q(Y().mark((function e(t){var n,r,o,i,a;return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:n=we(this.changes),e.prev=2,n.s();case 4:if((r=n.n()).done){e.next=11;break}return i=(o=r.value).assemblyName,a=o.fileIds,e.next=9,"gzi"in a?this.executeOnServerIndexed(t,i,a):this.executeOnServerFasta(t,i,a.fa);case 9:e.next=4;break;case 11:e.next=16;break;case 13:e.prev=13,e.t0=e.catch(2),n.e(e.t0);case 16:return e.prev=16,n.f(),e.finish(16);case 19:case"end":return e.stop()}}),e,this,[[2,13,16,19]])}))),function(e){return i.apply(this,arguments)})},{key:"executeOnServerIndexed",value:(o=Q(Y().mark((function e(t,n,r){var o,i,a,s,u,c,l,f,d,h,p,m,g,y,v,_,b,w,S,x,k,E,A,C,O,R,N,I,P;return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:if(s=(a=qt.env.CHUNK_SIZE)&&Number(a),qt.env.FILE_UPLOAD_FOLDER){e.next=5;break}throw new Error("No FILE_UPLOAD_FOLDER found in .env file");case 5:return u=r.fa,c=r.fai,l=r.gzi,f=t.assemblyModel,d=t.checkModel,h=t.fileModel,p=t.filesService,m=t.refSeqModel,g=t.user,e.next=9,h.findById(u);case 9:if(null==(y=e.sent)?void 0:y.checksum){e.next=13;break}throw new Error("No checksum for file document ".concat(y));case 13:return e.next=15,h.findById(c);case 15:if(null==(v=e.sent)?void 0:v.checksum){e.next=19;break}throw new Error("No checksum for file document ".concat(v));case 19:return e.next=21,h.findById(l);case 21:if(null==(_=e.sent)?void 0:_.checksum){e.next=25;break}throw new Error("No checksum for file document ".concat(_));case 25:return b=p.getFileHandle(y),w=p.getFileHandle(v),S=p.getFileHandle(_),x=new ws.BgzipIndexedFasta({fasta:b,fai:w,gzi:S}),e.next=31,x.getSequenceSizes();case 31:return k=e.sent,e.next=34,Promise.all([b.close(),w.close(),S.close()]);case 34:return e.next=36,f.findOne({name:n}).exec();case 36:if(!e.sent){e.next=39;break}throw new Error('Assembly "'.concat(n,'" already exists'));case 39:return e.next=41,d.find({default:!0}).exec();case 41:return E=e.sent.map((function(e){return e._id.toHexString()})),e.next=45,f.create([{_id:this.assembly,name:n,user:g,status:-1,fileIds:r,checks:E}]);case 45:A=he(e.sent,1),C=A[0],null===(o=(i=this.logger).debug)||void 0===o||o.call(i,'Added new assembly "'.concat(n,'", docId "').concat(C._id,'"')),e.t0=Y().keys(k);case 50:if((e.t1=e.t0()).done){e.next=60;break}return O=e.t1.value,e.next=54,m.create([K(K({name:O,assembly:C._id,length:k[O]},s?{chunkSize:s}:null),{},{user:g,status:-1})]);case 54:I=he(e.sent,1),P=I[0],null===(R=(N=this.logger).debug)||void 0===R||R.call(N,'Added new refSeq "'.concat(O,'", docId "').concat(P._id,'"')),e.next=50;break;case 60:case"end":return e.stop()}}),e,this)}))),function(e,t,n){return o.apply(this,arguments)})},{key:"executeOnServerFasta",value:(r=Q(Y().mark((function e(t,n,r){var o,i,a,s,u,c,l,f,d,h,p,m,g,y;return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return l=t.assemblyModel,f=t.checkModel,d=t.fileModel,h=t.user,e.next=3,d.findById(r).exec();case 3:if(p=e.sent){e.next=6;break}throw new Error('File "'.concat(r,'" not found in Mongo'));case 6:return null===(o=(i=this.logger).debug)||void 0===o||o.call(i,'FileId "'.concat(r,'", checksum "').concat(p.checksum,'"')),e.next=9,l.findOne({name:n}).exec();case 9:if(!e.sent){e.next=12;break}throw new Error('Assembly "'.concat(n,'" already exists'));case 12:return e.next=14,f.find({default:!0}).exec();case 14:return m=e.sent.map((function(e){return e._id.toHexString()})),e.next=18,l.create([{_id:this.assembly,name:n,user:h,status:-1,fileIds:{fa:r},checks:m}]);case 18:return g=he(e.sent,1),y=g[0],null===(a=(s=this.logger).debug)||void 0===a||a.call(s,'Added new assembly "'.concat(n,'", docId "').concat(y._id,'"')),null===(u=(c=this.logger).debug)||void 0===u||u.call(c,'File type: "'.concat(p.type,'", assemblyId: "').concat(y._id,'"')),e.next=25,this.addRefSeqIntoDb(p,y._id.toString(),t);case 25:case"end":return e.stop()}}),e,this)}))),function(e,t,n){return r.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(n=Q(Y().mark((function e(t){return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:throw new Error("executeOnLocalGFF3 not implemented");case 1:case"end":return e.stop()}}),e)}))),function(e){return n.apply(this,arguments)})},{key:"executeOnClient",value:(t=Q(Y().mark((function e(t){return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:case"end":return e.stop()}}),e)}))),function(e){return t.apply(this,arguments)})},{key:"getInverse",value:function(){return new s({typeName:this.typeName,changes:this.changes,assembly:this.assembly},{logger:this.logger})}}]),s}(ir.FromFileBaseChange);bs.AddAssemblyFromFileChange=Ss;var xs={},ks={};Object.defineProperty(ks,"__esModule",{value:!0}),ks.DeleteFeatureChange=void 0,ks.isDeleteFeatureChange=function(e){return"DeleteFeatureChange"===e.typeName};var Es=xs,As=function(e){oe(i,e);var t,n,r,o=fe(i);function i(e,t){var n;return ee(this,i),re(le(n=o.call(this,e,t)),"typeName","DeleteFeatureChange"),re(le(n),"changes",void 0),n.changes="changes"in e?e.changes:[e],n}return ne(i,[{key:"toJSON",value:function(){var e=this.assembly,t=this.changedIds,n=this.changes,r=this.typeName;if(1===n.length){var o=he(n,1)[0];return{typeName:r,changedIds:t,assembly:e,deletedFeature:o.deletedFeature,parentFeatureId:o.parentFeatureId}}return{typeName:r,changedIds:t,assembly:e,changes:n}}},{key:"executeOnServer",value:(r=Q(Y().mark((function e(t){var n,r,o,i,a,s,u=this;return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:n=t.featureModel,r=t.session,o=this.logger,i=we(this.changes),e.prev=3,s=Y().mark((function e(){var t,i,s,c,l,f,d,h,p;return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return s=(i=a.value).deletedFeature,c=i.parentFeatureId,e.next=4,n.findOne({allIds:s._id}).session(r).exec();case 4:if(l=e.sent){e.next=9;break}throw f="*** ERROR: The following featureId was not found in database ='".concat(s._id,"'"),o.error(f),new Error(f);case 9:if(!l._id.equals(s._id)){e.next=16;break}if(!c){e.next=12;break}throw new Error('Feature "'.concat(s._id,'" is top-level, but received a parent feature ID'));case 12:return e.next=14,n.findByIdAndDelete(l._id);case 14:return null===(d=o.debug)||void 0===d||d.call(o,'Feature "'.concat(s._id,'" deleted from document "').concat(l._id,'". Whole document deleted.')),e.abrupt("return",1);case 16:return(h=u.findAndDeleteChildFeature(l,s._id)).push(s._id),l.allIds=l.allIds.filter((function(e){return!h.includes(e)})),l.markModified("children"),e.prev=20,e.next=23,l.save();case 23:e.next=29;break;case 25:throw e.prev=25,e.t0=e.catch(20),null===(p=o.debug)||void 0===p||p.call(o,"*** FAILED: ".concat(e.t0)),e.t0;case 29:null===(t=o.debug)||void 0===t||t.call(o,'Feature "'.concat(s._id,'" deleted from document "').concat(l._id,'"'));case 30:case"end":return e.stop()}}),e,null,[[20,25]])})),i.s();case 6:if((a=i.n()).done){e.next=12;break}return e.delegateYield(s(),"t0",8);case 8:if(!e.t0){e.next=10;break}return e.abrupt("continue",10);case 10:e.next=6;break;case 12:e.next=17;break;case 14:e.prev=14,e.t1=e.catch(3),i.e(e.t1);case 17:return e.prev=17,i.f(),e.finish(17);case 20:case"end":return e.stop()}}),e,this,[[3,14,17,20]])}))),function(e){return r.apply(this,arguments)})},{key:"findAndDeleteChildFeature",value:function(e,t){if(!e.children)throw new Error("Feature ".concat(e._id," has no children"));var n=e._id,r=e.children,o=r.get(t);if(o){var i=this.getChildFeatureIds(o);return r.delete(t),i}var a,s=we(r);try{for(s.s();!(a=s.n()).done;){var u=he(a.value,2)[1];try{return this.findAndDeleteChildFeature(u,t)}catch(e){}}}catch(e){s.e(e)}finally{s.f()}throw new Error('Feature "'.concat(t,'" not found in ').concat(n))}},{key:"executeOnLocalGFF3",value:(n=Q(Y().mark((function e(t){return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:throw new Error("executeOnLocalGFF3 not implemented");case 1:case"end":return e.stop()}}),e)}))),function(e){return n.apply(this,arguments)})},{key:"executeOnClient",value:(t=Q(Y().mark((function e(t){var n,r,o,i,a,s;return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:if(t){e.next=2;break}throw new Error("No data store");case 2:n=we(this.changes),e.prev=3,n.s();case 5:if((r=n.n()).done){e.next=18;break}if(i=(o=r.value).deletedFeature,!(a=o.parentFeatureId)){e.next=15;break}if(s=t.getFeature(a)){e.next=12;break}throw new Error('Could not find parent feature "'.concat(a,'"'));case 12:s.deleteChild(i._id),e.next=16;break;case 15:t.getFeature(i._id)&&t.deleteFeature(i._id);case 16:e.next=5;break;case 18:e.next=23;break;case 20:e.prev=20,e.t0=e.catch(3),n.e(e.t0);case 23:return e.prev=23,n.f(),e.finish(23);case 26:case"end":return e.stop()}}),e,this,[[3,20,23,26]])}))),function(e){return t.apply(this,arguments)})},{key:"getInverse",value:function(){var e,t=this.assembly,n=this.changes,r=this.logger,o=me(this.changedIds).reverse(),i=me(n).reverse().map((function(e){return{addedFeature:e.deletedFeature,parentFeatureId:e.parentFeatureId}}));return null===(e=r.debug)||void 0===e||e.call(r,"INVERSE CHANGE '".concat(JSON.stringify(i),"'")),new Es.AddFeatureChange({changedIds:o,typeName:"AddFeatureChange",changes:i,assembly:t},{logger:r})}}]),i}(ar.FeatureChange);ks.DeleteFeatureChange=As,Object.defineProperty(xs,"__esModule",{value:!0}),xs.AddFeatureChange=void 0,xs.isAddFeatureChange=function(e){return"AddFeatureChange"===e.typeName};var Cs=ks,Os=function(e){oe(i,e);var t,n,r,o=fe(i);function i(e,t){var n;return ee(this,i),re(le(n=o.call(this,e,t)),"typeName","AddFeatureChange"),re(le(n),"changes",void 0),n.changes="changes"in e?e.changes:[e],n}return ne(i,[{key:"toJSON",value:function(){var e=this.assembly,t=this.changedIds,n=this.changes,r=this.typeName;if(1===n.length){var o=he(n,1)[0];return{typeName:r,changedIds:t,assembly:e,addedFeature:o.addedFeature,parentFeatureId:o.parentFeatureId,copyFeature:o.copyFeature,allIds:o.allIds}}return{typeName:r,changedIds:t,assembly:e,changes:n}}},{key:"executeOnServer",value:(r=Q(Y().mark((function e(t){var n,r,o,i,a,s,u,c,l,f,d,h,p,m,g,y,v,_,b,w,S,x,k,E,A,C,O,R,N,I,P,T,M,j,F,L;return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return o=t.assemblyModel,i=t.featureModel,a=t.refSeqModel,s=t.session,u=t.user,c=this.assembly,l=this.changes,f=this.logger,e.next=4,o.findById(c).session(s).exec();case 4:if(e.sent){e.next=9;break}throw d='*** ERROR: Assembly with id "'.concat(c,'" not found'),f.error(d),new Error(d);case 9:h=0,null===(n=f.debug)||void 0===n||n.call(f,"changes: ".concat(JSON.stringify(l))),p=we(l),e.prev=12,p.s();case 14:if((m=p.n()).done){e.next=64;break}return y=m.value,null===(g=f.debug)||void 0===g||g.call(f,"change: ".concat(JSON.stringify(y))),_=y.allIds,b=y.copyFeature,w=y.parentFeatureId,S=(v=y.addedFeature)._id,x=v.refSeq,e.next=21,a.findById(x).session(s).exec();case 21:if(e.sent){e.next=24;break}throw new Error('RefSeq was not found by assembly "'.concat(c,'" and seq_id "').concat(x,'" not found'));case 24:if(!b){e.next=34;break}return e.next=27,i.create([K(K({},v),{},{allIds:_,status:-1,user:u})],{session:s});case 27:E=he(e.sent,1),A=E[0],null===(k=f.debug)||void 0===k||k.call(f,'Copied feature, docId "'.concat(A._id,'" to assembly "').concat(c,'"')),h++,e.next=61;break;case 34:if(!w){e.next=53;break}return e.next=37,i.findOne({allIds:w}).session(s).exec();case 37:if(R=e.sent){e.next=40;break}throw new Error('Could not find feature with ID "'.concat(w,'"'));case 40:if(N=this.getFeatureFromId(R,w)){e.next=43;break}throw new Error('Could not find feature with ID "'.concat(w,'" in feature "').concat(R._id,'"'));case 43:return N.children||(N.children=new Map),null!==(C=N.attributes)&&void 0!==C&&C._id||((I=N.attributes)||(I={}),I=K({_id:[N._id.toString()]},JSON.parse(JSON.stringify(I))),N.attributes=I),N.children.set(S,K(K({allIds:[]},v),{},{_id:S})),N.children=new Map(me(N.children.entries()).sort((function(e,t){return e[1].min-t[1].min}))),P=this.getChildFeatureIds(v),(O=R.allIds).push.apply(O,[S].concat(me(P))),e.next=51,R.save();case 51:e.next=61;break;case 53:return M=this.getChildFeatureIds(v),j=[S].concat(me(M)),e.next=57,i.create([K({allIds:j,status:0},v)],{session:s});case 57:F=he(e.sent,1),L=F[0],null===(T=f.verbose)||void 0===T||T.call(f,'Added docId "'.concat(L._id,'"'));case 61:h++;case 62:e.next=14;break;case 64:e.next=69;break;case 66:e.prev=66,e.t0=e.catch(12),p.e(e.t0);case 69:return e.prev=69,p.f(),e.finish(69);case 72:null===(r=f.debug)||void 0===r||r.call(f,"Added ".concat(h," new feature(s) into database."));case 73:case"end":return e.stop()}}),e,this,[[12,66,69,72]])}))),function(e){return r.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(n=Q(Y().mark((function e(t){return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:throw new Error("executeOnLocalGFF3 not implemented");case 1:case"end":return e.stop()}}),e)}))),function(e){return n.apply(this,arguments)})},{key:"executeOnClient",value:(t=Q(Y().mark((function e(t){var n,r,o,i,a,s,u;return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:if(t){e.next=2;break}throw new Error("No data store");case 2:n=this.assembly,r=we(this.changes),e.prev=4,r.s();case 6:if((o=r.n()).done){e.next=20;break}if(a=(i=o.value).addedFeature,!(s=i.parentFeatureId)){e.next=17;break}if(u=t.getFeature(s)){e.next=13;break}throw new Error('Could not find parent feature "'.concat(s,'"'));case 13:u.attributes.get("_id")||u.setAttribute("_id",[u._id]),u.addChild(a),e.next=18;break;case 17:t.addFeature(n,a);case 18:e.next=6;break;case 20:e.next=25;break;case 22:e.prev=22,e.t0=e.catch(4),r.e(e.t0);case 25:return e.prev=25,r.f(),e.finish(25);case 28:case"end":return e.stop()}}),e,this,[[4,22,25,28]])}))),function(e){return t.apply(this,arguments)})},{key:"getInverse",value:function(){var e=this.assembly,t=this.changes,n=this.logger,r=me(this.changedIds).reverse(),o=me(t).reverse().map((function(e){return{deletedFeature:e.addedFeature,parentFeatureId:e.parentFeatureId}}));return new Cs.DeleteFeatureChange({changedIds:r,typeName:"DeleteFeatureChange",changes:o,assembly:e},{logger:n})}}]),i}(ar.FeatureChange);xs.AddFeatureChange=Os;var Rs={};Object.defineProperty(Rs,"__esModule",{value:!0}),Rs.AddFeaturesFromFileChange=void 0;var Ns=function(e){oe(i,e);var t,n,r,o=fe(i);function i(e,t){var n,r;return ee(this,i),re(le(r=o.call(this,e,t)),"typeName","AddFeaturesFromFileChange"),re(le(r),"changes",void 0),re(le(r),"deleteExistingFeatures",!1),r.deleteExistingFeatures=null!==(n=e.deleteExistingFeatures)&&void 0!==n&&n,r.changes="changes"in e?e.changes:[e],r}return ne(i,[{key:"notification",get:function(){return"Features have been added. To see them, please refresh the page."}},{key:"toJSON",value:function(){var e=this.assembly,t=this.changes,n=this.deleteExistingFeatures,r=this.typeName;return 1===t.length?{typeName:r,assembly:e,fileId:he(t,1)[0].fileId,deleteExistingFeatures:n}:{typeName:r,assembly:e,changes:t,deleteExistingFeatures:n}}},{key:"executeOnServer",value:(r=Q(Y().mark((function e(t){var n,r,o,i,a,s,u,c,l,f,d,h,p,m,g,y,v,_,b;return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:if(r=t.fileModel,o=t.filesService,i=this.changes,a=this.logger,!this.deleteExistingFeatures){e.next=5;break}return e.next=5,this.removeExistingFeatures(t);case 5:s=we(i),e.prev=6,s.s();case 8:if((u=s.n()).done){e.next=56;break}if(l=u.value.fileId,qt.env.FILE_UPLOAD_FOLDER){e.next=14;break}throw new Error("No FILE_UPLOAD_FOLDER found in .env file");case 14:return e.next=16,r.findById(l).exec();case 16:if(f=e.sent){e.next=19;break}throw new Error('File "'.concat(l,'" not found in Mongo'));case 19:null===(c=a.debug)||void 0===c||c.call(a,'FileId "'.concat(l,'", checksum "').concat(f.checksum,'"')),d=o.parseGFF3(o.getFileStream(f)),h=0,p=!1,m=!1,e.prev=24,y=W(d);case 26:return e.next=28,y.next();case 28:if(!(p=!(v=e.sent).done)){e.next=38;break}return _=v.value,e.next=33,this.addFeatureIntoDb(_,t);case 33:++h%1e3==0&&(null===(b=a.debug)||void 0===b||b.call(a,"Processed ".concat(h," features")));case 35:p=!1,e.next=26;break;case 38:e.next=44;break;case 40:e.prev=40,e.t0=e.catch(24),m=!0,g=e.t0;case 44:if(e.prev=44,e.prev=45,!p||null==y.return){e.next=49;break}return e.next=49,y.return();case 49:if(e.prev=49,!m){e.next=52;break}throw g;case 52:return e.finish(49);case 53:return e.finish(44);case 54:e.next=8;break;case 56:e.next=61;break;case 58:e.prev=58,e.t1=e.catch(6),s.e(e.t1);case 61:return e.prev=61,s.f(),e.finish(61);case 64:null===(n=a.debug)||void 0===n||n.call(a,"New features added into database!");case 65:case"end":return e.stop()}}),e,this,[[6,58,61,64],[24,40,44,54],[45,,49,53]])}))),function(e){return r.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(n=Q(Y().mark((function e(t){return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:throw new Error("executeOnLocalGFF3 not implemented");case 1:case"end":return e.stop()}}),e)}))),function(e){return n.apply(this,arguments)})},{key:"executeOnClient",value:(t=Q(Y().mark((function e(t){return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:case"end":return e.stop()}}),e)}))),function(e){return t.apply(this,arguments)})},{key:"getInverse",value:function(){return new i({typeName:this.typeName,changes:this.changes,assembly:this.assembly},{logger:this.logger})}}]),i}(ir.FromFileBaseChange);Rs.AddFeaturesFromFileChange=Ns;var Is={};Object.defineProperty(Is,"__esModule",{value:!0}),Is.AddRefSeqAliasesChange=void 0;var Ps=O.default,Ts=function(e){oe(r,e);var t,n=fe(r);function r(e,t){var o;return ee(this,r),re(le(o=n.call(this,e,t)),"typeName","AddRefSeqAliasesChange"),re(le(o),"refSeqAliases",void 0),o.refSeqAliases=e.refSeqAliases,o}return ne(r,[{key:"executeOnClient",value:function(e){var t=(0,Ps.getSession)(e).assemblyManager.get(this.assembly);if(!t)throw new Error("assembly ".concat(this.assembly," not found"));var n=t.refNameAliases,r=t.lowerCaseRefNameAliases;if(!n||!r)throw new Error("Session refNameAliases not found in assembly");var o,i=we(this.refSeqAliases);try{for(i.s();!(o=i.n()).done;){var a,s=o.value,u=s.refName,c=we(s.aliases);try{for(c.s();!(a=c.n()).done;){var l=a.value;n[l]=u,r[l.toLowerCase()]=u}}catch(e){c.e(e)}finally{c.f()}}}catch(e){i.e(e)}finally{i.f()}return t.setRefNameAliases(n,r),Promise.resolve()}},{key:"getInverse",value:function(){throw new Error("Method not implemented.")}},{key:"toJSON",value:function(){return{assembly:this.assembly,typeName:this.typeName,refSeqAliases:this.refSeqAliases}}},{key:"executeOnServer",value:(t=Q(Y().mark((function e(t){var n,r,o,i,a,s,u,c,l,f;return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:n=t.refSeqModel,r=t.session,o=this.assembly,i=this.logger,a=we(this.refSeqAliases),e.prev=3,a.s();case 5:if((s=a.n()).done){e.next=13;break}return c=s.value,null===(u=i.debug)||void 0===u||u.call(i,"Updating Refname alias for assembly: ".concat(o,", refSeqAlias: ").concat(JSON.stringify(c))),l=c.aliases,f=c.refName,e.next=11,n.updateOne({assembly:o,name:f},{$set:{aliases:l}}).session(r);case 11:e.next=5;break;case 13:e.next=18;break;case 15:e.prev=15,e.t0=e.catch(3),a.e(e.t0);case 18:return e.prev=18,a.f(),e.finish(18);case 21:case"end":return e.stop()}}),e,this,[[3,15,18,21]])}))),function(e){return t.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:function(e){throw new Error("Method not implemented.")}},{key:"notification",get:function(){return"RefSeq aliases have been added."}}]),r}(ar.AssemblySpecificChange);Is.AddRefSeqAliasesChange=Ts;var Ms={};Object.defineProperty(Ms,"__esModule",{value:!0}),Ms.DeleteAssemblyChange=void 0;var js=O.default,Fs=function(e){oe(i,e);var t,n,r,o=fe(i);function i(){var e;ee(this,i);for(var t=arguments.length,n=new Array(t),r=0;r<t;r++)n[r]=arguments[r];return re(le(e=o.call.apply(o,[this].concat(n))),"typeName","DeleteAssemblyChange"),e}return ne(i,[{key:"notification",get:function(){return'Assembly "'.concat(this.assembly,'" deleted successfully.')}},{key:"toJSON",value:function(){return{typeName:this.typeName,assembly:this.assembly}}},{key:"executeOnServer",value:(r=Q(Y().mark((function e(t){var n,r,o,i,a,s,u,c,l,f;return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return r=t.assemblyModel,o=t.featureModel,i=t.refSeqChunkModel,a=t.refSeqModel,s=t.session,u=this.assembly,c=this.logger,e.next=4,r.findById(u).session(s).exec();case 4:if(e.sent){e.next=9;break}throw l='*** ERROR: Assembly with id "'.concat(u,'" not found'),c.error(l),new Error(l);case 9:return e.next=11,a.find({assembly:u}).exec();case 11:return f=e.sent.map((function(e){return e._id})),e.next=15,i.deleteMany({refSeq:f}).exec();case 15:return e.next=17,o.deleteMany({refSeq:f}).exec();case 17:return e.next=19,a.deleteMany({assembly:u}).exec();case 19:return e.next=21,r.findByIdAndDelete(u).exec();case 21:null===(n=c.debug)||void 0===n||n.call(c,'Assembly "'.concat(u,'" deleted from database.'));case 22:case"end":return e.stop()}}),e,this)}))),function(e){return r.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(n=Q(Y().mark((function e(t){return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:throw new Error("executeOnLocalGFF3 not implemented");case 1:case"end":return e.stop()}}),e)}))),function(e){return n.apply(this,arguments)})},{key:"executeOnClient",value:(t=Q(Y().mark((function e(t){var n,r,o,i;return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:if(o=this.assembly,t){e.next=3;break}throw new Error("No data store");case 3:return i=(0,js.getSession)(t),t.assemblies.has(o)&&t.deleteAssembly(o),e.next=7,null===(n=i.removeAssembly)||void 0===n?void 0:n.call(i,o);case 7:return e.next=9,null===(r=i.removeSessionAssembly)||void 0===r?void 0:r.call(i,o);case 9:case"end":return e.stop()}}),e,this)}))),function(e){return t.apply(this,arguments)})},{key:"getInverse",value:function(){return new i({typeName:"DeleteAssemblyChange",assembly:this.assembly},{logger:this.logger})}}]),i}(ar.AssemblySpecificChange);Ms.DeleteAssemblyChange=Fs;var Ls={};Object.defineProperty(Ls,"__esModule",{value:!0}),Ls.DeleteUserChange=void 0;var Ds=function(e){oe(i,e);var t,n,r,o=fe(i);function i(e,t){var n;return ee(this,i),re(le(n=o.call(this,e,t)),"typeName","DeleteUserChange"),re(le(n),"changes",void 0),re(le(n),"userId",void 0),n.changes="changes"in e?e.changes:[e],n.userId=e.userId,n}return ne(i,[{key:"toJSON",value:function(){return{typeName:this.typeName,userId:this.userId}}},{key:"executeOnServer",value:(r=Q(Y().mark((function e(t){var n,r,o,i,a;return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return n=t.session,r=t.userModel,o=this.logger,i=this.userId,e.next=4,r.findOneAndDelete({_id:i}).session(n).exec();case 4:if(e.sent){e.next=9;break}throw a='*** ERROR: User with id "'.concat(i,'" not found'),o.error(a),new Error(a);case 9:case"end":return e.stop()}}),e,this)}))),function(e){return r.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(n=Q(Y().mark((function e(t){return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:throw new Error("executeOnLocalGFF3 not implemented");case 1:case"end":return e.stop()}}),e)}))),function(e){return n.apply(this,arguments)})},{key:"executeOnClient",value:(t=Q(Y().mark((function e(t){return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:case"end":return e.stop()}}),e)}))),function(e){return t.apply(this,arguments)})},{key:"getInverse",value:function(){return new i({typeName:this.typeName,userId:this.userId},{logger:this.logger})}}]),i}(ar.Change);Ls.DeleteUserChange=Ds;var qs={};Object.defineProperty(qs,"__esModule",{value:!0}),qs.FeatureAttributeChange=void 0,qs.isFeatureAttributeChange=function(e){return"FeatureAttributeChange"===e.typeName};var Bs=function(e){oe(i,e);var t,n,r,o=fe(i);function i(e,t){var n;return ee(this,i),re(le(n=o.call(this,e,t)),"typeName","FeatureAttributeChange"),re(le(n),"changes",void 0),n.changes="changes"in e?e.changes:[e],n}return ne(i,[{key:"toJSON",value:function(){var e=this.assembly,t=this.changedIds,n=this.changes,r=this.typeName;if(1===n.length){var o=he(n,1)[0];return{typeName:r,changedIds:t,assembly:e,featureId:o.featureId,attributes:o.attributes}}return{typeName:r,changedIds:t,assembly:e,changes:n}}},{key:"executeOnServer",value:(r=Q(Y().mark((function e(t){var n,r,o,i,a,s,u,c,l,f,d,h,p,m,g,y,v,_,b,w,S;return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:n=t.featureModel,r=t.session,i=this.logger,a=[],s=we(o=this.changes),e.prev=4,s.s();case 6:if((u=s.n()).done){e.next=26;break}return f=u.value.featureId,e.next=11,n.findOne({allIds:f}).session(r).exec();case 11:if(d=e.sent){e.next=16;break}throw h="*** ERROR: The following featureId was not found in database ='".concat(f,"'"),i.error(h),new Error(h);case 16:if(null===(c=i.debug)||void 0===c||c.call(i,"*** Feature found: ".concat(JSON.stringify(d))),p=this.getFeatureFromId(d,f)){e.next=22;break}throw i.error("ERROR when searching feature by featureId"),new Error("ERROR when searching feature by featureId");case 22:null===(l=i.debug)||void 0===l||l.call(i,"*** Found feature: ".concat(JSON.stringify(p))),a.push({feature:p,topLevelFeature:d});case 24:e.next=6;break;case 26:e.next=31;break;case 28:e.prev=28,e.t0=e.catch(4),s.e(e.t0);case 31:return e.prev=31,s.f(),e.finish(31);case 34:m=we(o.entries()),e.prev=35,m.s();case 37:if((g=m.n()).done){e.next=55;break}return v=he(g.value,2),w=(_=a[v[0]]).topLevelFeature,(b=_.feature).attributes=v[1].attributes,w._id.equals(b._id)?w.markModified("attributes"):w.markModified("children"),e.prev=43,e.next=46,w.save();case 46:e.next=52;break;case 48:throw e.prev=48,e.t1=e.catch(43),null===(S=i.debug)||void 0===S||S.call(i,"*** FAILED: ".concat(e.t1)),e.t1;case 52:null===(y=i.debug)||void 0===y||y.call(i,"*** Feature attributes modified (added, edited or deleted), docId: ".concat(JSON.stringify(w)));case 53:e.next=37;break;case 55:e.next=60;break;case 57:e.prev=57,e.t2=e.catch(35),m.e(e.t2);case 60:return e.prev=60,m.f(),e.finish(60);case 63:case"end":return e.stop()}}),e,this,[[4,28,31,34],[35,57,60,63],[43,48]])}))),function(e){return r.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(n=Q(Y().mark((function e(t){return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:throw new Error("applyToLocalGFF3 not implemented");case 1:case"end":return e.stop()}}),e)}))),function(e){return n.apply(this,arguments)})},{key:"executeOnClient",value:(t=Q(Y().mark((function e(t){var n,r,o,i,a,s;return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:if(t){e.next=2;break}throw new Error("No data store");case 2:n=we(this.changedIds.entries()),e.prev=3,n.s();case 5:if((r=n.n()).done){e.next=13;break}if(o=he(r.value,2),i=o[0],s=t.getFeature(a=o[1])){e.next=10;break}throw new Error('Could not find feature with identifier "'.concat(a,'"'));case 10:s.setAttributes(new Map(Object.entries(this.changes[i].attributes)));case 11:e.next=5;break;case 13:e.next=18;break;case 15:e.prev=15,e.t0=e.catch(3),n.e(e.t0);case 18:return e.prev=18,n.f(),e.finish(18);case 21:case"end":return e.stop()}}),e,this,[[3,15,18,21]])}))),function(e){return t.apply(this,arguments)})},{key:"getInverse",value:function(){var e=this.assembly,t=this.changes,n=this.logger;return new i({changedIds:me(this.changedIds).reverse(),typeName:"FeatureAttributeChange",changes:me(t).reverse().map((function(e){return{featureId:e.featureId,attributes:e.attributes}})),assembly:e},{logger:n})}}]),i}(ar.FeatureChange);qs.FeatureAttributeChange=Bs;var Us={},zs=["__v","_id","assemblies","internetAccounts","plugins","tracks"];function Gs(e){var t=e.assemblies,n=e.internetAccounts,r=e.plugins,o=e.tracks,i=function(e,t){if(null==e)return{};var n,r,o=function(e,t){if(null==e)return{};var n,r,o={},i=Object.keys(e);for(r=0;r<i.length;r++)t.indexOf(n=i[r])>=0||(o[n]=e[n]);return o}(e,t);if(Object.getOwnPropertySymbols){var i=Object.getOwnPropertySymbols(e);for(r=0;r<i.length;r++)t.indexOf(n=i[r])>=0||Object.prototype.propertyIsEnumerable.call(e,n)&&(o[n]=e[n])}return o}(e,zs),a=null==t?void 0:t.filter((function(e){return"ApolloSequenceAdapter"!==e.sequence.adapter.type})),s=null==o?void 0:o.filter((function(e){return"ApolloTrack"!==e.type})),u=null==r?void 0:r.filter((function(e){return"Apollo"!==e.name})),c=null==n?void 0:n.filter((function(e){return"ApolloInternetAccount"!==e.type})),l=i;return a&&(l.assemblies=a),s&&(l.tracks=s),u&&(l.plugins=u),c&&(l.internetAccounts=c),l}Object.defineProperty(Us,"__esModule",{value:!0}),Us.ImportJBrowseConfigChange=void 0,Us.filterJBrowseConfig=Gs;var Hs=function(e){oe(i,e);var t,n,r,o=fe(i);function i(e,t){var n;return ee(this,i),re(le(n=o.call(this,e,t)),"typeName","ImportJBrowseConfigChange"),re(le(n),"oldJBrowseConfig",void 0),re(le(n),"newJBrowseConfig",void 0),n.oldJBrowseConfig=e.oldJBrowseConfig,n.newJBrowseConfig=e.newJBrowseConfig,n}return ne(i,[{key:"toJSON",value:function(){return{typeName:this.typeName,oldJBrowseConfig:this.oldJBrowseConfig,newJBrowseConfig:this.newJBrowseConfig}}},{key:"executeOnServer",value:(r=Q(Y().mark((function e(t){var n,r,o,i,a;return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return r=t.jbrowseConfigModel,o=this.logger,i=this.newJBrowseConfig,e.next=4,r.deleteMany();case 4:if(i){e.next=6;break}return e.abrupt("return");case 6:return a=Gs(i),e.next=9,r.create(a);case 9:null===(n=o.debug)||void 0===n||n.call(o,"Stored new JBrowse Config");case 10:case"end":return e.stop()}}),e,this)}))),function(e){return r.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(n=Q(Y().mark((function e(t){return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:throw new Error("executeOnLocalGFF3 not implemented");case 1:case"end":return e.stop()}}),e)}))),function(e){return n.apply(this,arguments)})},{key:"executeOnClient",value:(t=Q(Y().mark((function e(t){return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:case"end":return e.stop()}}),e)}))),function(e){return t.apply(this,arguments)})},{key:"getInverse",value:function(){return new i({typeName:"ImportJBrowseConfigChange",oldJBrowseConfig:this.newJBrowseConfig,newJBrowseConfig:this.oldJBrowseConfig},{logger:this.logger})}}]),i}(ar.Change);Us.ImportJBrowseConfigChange=Hs;var Ws={};Object.defineProperty(Ws,"__esModule",{value:!0}),Ws.LocationEndChange=void 0,Ws.isLocationEndChange=function(e){return"LocationEndChange"===e.typeName};var Vs=function(e){oe(i,e);var t,n,r,o=fe(i);function i(e,t){var n;return ee(this,i),re(le(n=o.call(this,e,t)),"typeName","LocationEndChange"),re(le(n),"changes",void 0),n.changes="changes"in e?e.changes:[e],n}return ne(i,[{key:"toJSON",value:function(){var e=this.assembly,t=this.changedIds,n=this.changes,r=this.typeName;if(1===n.length){var o=he(n,1)[0];return{typeName:r,changedIds:t,assembly:e,featureId:o.featureId,oldEnd:o.oldEnd,newEnd:o.newEnd}}return{typeName:r,changedIds:t,assembly:e,changes:n}}},{key:"executeOnServer",value:(r=Q(Y().mark((function e(t){var n,r,o,i,a,s,u,c,l,f,d,h,p,m,g,y,v,_,b,w,S,x,k,E,A,C,O,R;return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:n=t.featureModel,r=t.session,i=this.logger,a=[],s=we(o=this.changes),e.prev=4,s.s();case 6:if((u=s.n()).done){e.next=49;break}return d=(f=u.value).featureId,h=f.oldEnd,e.next=11,n.findOne({allIds:d}).session(r).exec();case 11:if(p=e.sent){e.next=16;break}throw m="*** ERROR: The following featureId was not found in database ='".concat(d,"'"),i.error(m),new Error(m);case 16:if(null===(c=i.debug)||void 0===c||c.call(i,"*** TOP level feature found: ".concat(JSON.stringify(p))),g=this.getFeatureFromId(p,d)){e.next=22;break}throw i.error("ERROR when searching feature by featureId"),new Error("ERROR when searching feature by featureId");case 22:if(null===(l=i.debug)||void 0===l||l.call(i,"*** Found feature: ".concat(JSON.stringify(g))),g.max!==h){e.next=27;break}a.push({feature:g,topLevelFeature:p}),e.next=47;break;case 27:if(!g.children){e.next=47;break}y=we(g.children),e.prev=29,y.s();case 31:if((v=y.n()).done){e.next=39;break}if(_=he(v.value,2),(b=_[1]).max!==h){e.next=37;break}return null===(w=i.debug)||void 0===w||w.call(i,"*************** UPDATE CHILD FEATURE ID= ".concat(d,", CHILD: ").concat(JSON.stringify(b))),a.push({feature:b,topLevelFeature:p}),e.abrupt("break",39);case 37:e.next=31;break;case 39:e.next=44;break;case 41:e.prev=41,e.t0=e.catch(29),y.e(e.t0);case 44:return e.prev=44,y.f(),e.finish(44);case 47:e.next=6;break;case 49:e.next=54;break;case 51:e.prev=51,e.t1=e.catch(4),s.e(e.t1);case 54:return e.prev=54,s.f(),e.finish(54);case 57:S=we(o.entries()),e.prev=58,S.s();case 60:if((x=S.n()).done){e.next=78;break}return E=he(x.value,2),O=(A=a[E[0]]).topLevelFeature,(C=A.feature).max=E[1].newEnd,O._id.equals(C._id)?O.markModified("end"):O.markModified("children"),e.prev=66,e.next=69,O.save();case 69:e.next=75;break;case 71:throw e.prev=71,e.t2=e.catch(66),null===(R=i.debug)||void 0===R||R.call(i,"*** FAILED: ".concat(e.t2)),e.t2;case 75:null===(k=i.debug)||void 0===k||k.call(i,"*** Object updated in Mongo. 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New object: ".concat(JSON.stringify(k)));case 57:e.next=41;break;case 59:e.next=64;break;case 61:e.prev=61,e.t2=e.catch(39),v.e(e.t2);case 64:return e.prev=64,v.f(),e.finish(64);case 67:case"end":return e.stop()}}),e,this,[[4,32,35,38],[39,61,64,67],[47,52]])}))),function(e){return r.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(n=Q(Y().mark((function e(t){return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:throw new Error("executeOnLocalGFF3 not implemented");case 1:case"end":return e.stop()}}),e)}))),function(e){return n.apply(this,arguments)})},{key:"executeOnClient",value:(t=Q(Y().mark((function e(t){var n,r,o,i,a,s;return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:if(t){e.next=2;break}throw new Error("No data store");case 2:n=we(this.changedIds.entries()),e.prev=3,n.s();case 5:if((r=n.n()).done){e.next=13;break}if(o=he(r.value,2),i=o[0],s=t.getFeature(a=o[1])){e.next=10;break}throw new Error('Could not find feature with identifier 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ne(i,[{key:"toJSON",value:function(){var e=this.changes,t=this.typeName,n=this.userId;return 1===e.length?{typeName:t,userId:n,role:he(e,1)[0].role}:{typeName:t,userId:n,changes:e}}},{key:"executeOnServer",value:(r=Q(Y().mark((function e(t){var n,r,o,i,a,s,u,c,l,f,d;return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:n=t.session,r=t.userModel,i=this.logger,a=this.userId,s=we(o=this.changes),e.prev=3,s.s();case 5:if((u=s.n()).done){e.next=18;break}return l=u.value,null===(c=i.debug)||void 0===c||c.call(i,"change: ".concat(JSON.stringify(o))),f=l.role,e.next=11,r.findByIdAndUpdate(a,{role:f}).session(n).exec();case 11:if(e.sent){e.next=16;break}throw d='*** ERROR: User with id "'.concat(a,'" not found'),i.error(d),new Error(d);case 16:e.next=5;break;case 18:e.next=23;break;case 20:e.prev=20,e.t0=e.catch(3),s.e(e.t0);case 23:return e.prev=23,s.f(),e.finish(23);case 26:case"end":return e.stop()}}),e,this,[[3,20,23,26]])}))),function(e){return 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e;3===o.readyState&&(null===(e=t.opts.cookieJar)||void 0===e||e.parseCookies(o)),4===o.readyState&&(200===o.status||1223===o.status?t.onLoad():t.setTimeoutFn((function(){t.onError("number"==typeof o.status?o.status:0)}),0))},o.send(this.data)}catch(e){return void this.setTimeoutFn((function(){t.onError(e)}),0)}"undefined"!=typeof document&&(this.index=n.requestsCount++,n.requests[this.index]=this)}},{key:"onError",value:function(e){this.emitReserved("error",e,this.xhr),this.cleanup(!0)}},{key:"cleanup",value:function(e){if(null!=this.xhr){if(this.xhr.onreadystatechange=Fc,e)try{this.xhr.abort()}catch(e){}"undefined"!=typeof document&&delete n.requests[this.index],this.xhr=null}}},{key:"onLoad",value:function(){var e=this.xhr.responseText;null!==e&&(this.emitReserved("data",e),this.emitReserved("success"),this.cleanup())}},{key:"abort",value:function(){this.cleanup()}}]),n}(_c);function Bc(){for(var e in qc.requests)qc.requests.hasOwnProperty(e)&&qc.requests[e].abort()}qc.requestsCount=0,qc.requests={},"undefined"!=typeof document&&("function"==typeof attachEvent?attachEvent("onunload",Bc):"function"==typeof addEventListener&&addEventListener("onpagehide"in bc?"pagehide":"unload",Bc,!1));var Uc=function(){return"function"==typeof Promise&&"function"==typeof Promise.resolve?function(e){return Promise.resolve().then(e)}:function(e,t){return t(e,0)}}(),zc=bc.WebSocket||bc.MozWebSocket,Gc="undefined"!=typeof navigator&&"string"==typeof navigator.product&&"reactnative"===navigator.product.toLowerCase(),Hc=function(e){oe(n,e);var t=fe(n);function n(e){var r;return ee(this,n),(r=t.call(this,e)).supportsBinary=!e.forceBase64,r}return ne(n,[{key:"name",get:function(){return"websocket"}},{key:"doOpen",value:function(){if(this.check()){var e=this.uri(),t=this.opts.protocols,n=Gc?{}:wc(this.opts,"agent","perMessageDeflate","pfx","key","passphrase","cert","ca","ciphers","rejectUnauthorized","localAddress","protocolVersion","origin","maxPayload","family","checkServerIdentity");this.opts.extraHeaders&&(n.headers=this.opts.extraHeaders);try{this.ws=Gc?new zc(e,t,n):t?new zc(e,t):new zc(e)}catch(e){return this.emitReserved("error",e)}this.ws.binaryType=this.socket.binaryType,this.addEventListeners()}}},{key:"addEventListeners",value:function(){var e=this;this.ws.onopen=function(){e.opts.autoUnref&&e.ws._socket.unref(),e.onOpen()},this.ws.onclose=function(t){return e.onClose({description:"websocket connection closed",context:t})},this.ws.onmessage=function(t){return e.onData(t.data)},this.ws.onerror=function(t){return e.onError("websocket error",t)}}},{key:"write",value:function(e){var t=this;this.writable=!1;for(var n=function(){var n=r===e.length-1;ac(e[r],t.supportsBinary,(function(e){try{t.ws.send(e)}catch(e){}n&&Uc((function(){t.writable=!0,t.emitReserved("drain")}),t.setTimeoutFn)}))},r=0;r<e.length;r++)n()}},{key:"doClose",value:function(){void 0!==this.ws&&(this.ws.close(),this.ws=null)}},{key:"uri",value:function(){var e=this.opts.secure?"wss":"ws",t=this.query||{};return this.opts.timestampRequests&&(t[this.opts.timestampParam]=Pc()),this.supportsBinary||(t.b64=1),this.createUri(e,t)}},{key:"check",value:function(){return!!zc}}]),n}(Cc),Wc=function(e){oe(n,e);var t=fe(n);function n(){return ee(this,n),t.apply(this,arguments)}return ne(n,[{key:"name",get:function(){return"webtransport"}},{key:"doOpen",value:function(){var e=this;"function"==typeof WebTransport&&(this.transport=new WebTransport(this.createUri("https"),this.opts.transportOptions[this.name]),this.transport.closed.then((function(){e.onClose()})).catch((function(t){e.onError("webtransport error",t)})),this.transport.ready.then((function(){e.transport.createBidirectionalStream().then((function(t){var n=function(e,t){fc||(fc=new TextDecoder);var n=[],r=0,o=-1,i=!1;return new TransformStream({transform:function(a,s){for(n.push(a);;){if(0===r){if(yc(n)<1)break;var u=vc(n,1);i=128==(128&u[0]),r=(o=127&u[0])<126?3:126===o?1:2}else if(1===r){if(yc(n)<2)break;var c=vc(n,2);o=new DataView(c.buffer,c.byteOffset,c.length).getUint16(0),r=3}else if(2===r){if(yc(n)<8)break;var l=vc(n,8),f=new DataView(l.buffer,l.byteOffset,l.length),d=f.getUint32(0);if(d>Math.pow(2,21)-1){s.enqueue(nc);break}o=d*Math.pow(2,32)+f.getUint32(4),r=3}else{if(yc(n)<o)break;var h=vc(n,o);s.enqueue(hc(i?h:fc.decode(h),t)),r=0}if(0===o||o>e){s.enqueue(nc);break}}}})}(Number.MAX_SAFE_INTEGER,e.socket.binaryType),r=t.readable.pipeThrough(n).getReader(),o=new TransformStream({transform:function(e,t){!function(e,t){rc&&e.data instanceof Blob?e.data.arrayBuffer().then(uc).then(t):oc&&(e.data instanceof ArrayBuffer||ic(e.data))?t(uc(e.data)):ac(e,!1,(function(e){tc||(tc=new TextEncoder),t(tc.encode(e))}))}(e,(function(n){var r,o=n.length;if(o<126)r=new Uint8Array(1),new DataView(r.buffer).setUint8(0,o);else if(o<65536){r=new Uint8Array(3);var i=new DataView(r.buffer);i.setUint8(0,126),i.setUint16(1,o)}else{r=new Uint8Array(9);var a=new DataView(r.buffer);a.setUint8(0,127),a.setBigUint64(1,BigInt(o))}e.data&&"string"!=typeof e.data&&(r[0]|=128),t.enqueue(r),t.enqueue(n)}))}});o.readable.pipeTo(t.writable),e.writer=o.writable.getWriter(),function t(){r.read().then((function(n){n.done||(e.onPacket(n.value),t())})).catch((function(e){}))}();var i={type:"open"};e.query.sid&&(i.data='{"sid":"'.concat(e.query.sid,'"}')),e.writer.write(i).then((function(){return e.onOpen()}))}))})))}},{key:"write",value:function(e){var t=this;this.writable=!1;for(var n=function(){var n=r===e.length-1;t.writer.write(e[r]).then((function(){n&&Uc((function(){t.writable=!0,t.emitReserved("drain")}),t.setTimeoutFn)}))},r=0;r<e.length;r++)n()}},{key:"doClose",value:function(){var e;null===(e=this.transport)||void 0===e||e.close()}}]),n}(Cc),Vc={websocket:Hc,webtransport:Wc,polling:Dc},$c=/^(?:(?![^:@\/?#]+:[^:@\/]*@)(http|https|ws|wss):\/\/)?((?:(([^:@\/?#]*)(?::([^:@\/?#]*))?)?@)?((?:[a-f0-9]{0,4}:){2,7}[a-f0-9]{0,4}|[^:\/?#]*)(?::(\d*))?)(((\/(?:[^?#](?![^?#\/]*\.[^?#\/.]+(?:[?#]|$)))*\/?)?([^?#\/]*))(?:\?([^#]*))?(?:#(.*))?)/,Jc=["source","protocol","authority","userInfo","user","password","host","port","relative","path","directory","file","query","anchor"];function Kc(e){var t,n,r=e,o=e.indexOf("["),i=e.indexOf("]");-1!=o&&-1!=i&&(e=e.substring(0,o)+e.substring(o,i).replace(/:/g,";")+e.substring(i,e.length));for(var a,s=$c.exec(e||""),u={},c=14;c--;)u[Jc[c]]=s[c]||"";return-1!=o&&-1!=i&&(u.source=r,u.host=u.host.substring(1,u.host.length-1).replace(/;/g,":"),u.authority=u.authority.replace("[","").replace("]","").replace(/;/g,":"),u.ipv6uri=!0),u.pathNames=(n=(t=u.path).replace(/\/{2,9}/g,"/").split("/"),"/"!=t.slice(0,1)&&0!==t.length||n.splice(0,1),"/"==t.slice(-1)&&n.splice(n.length-1,1),n),u.queryKey=(a={},u.query.replace(/(?:^|&)([^&=]*)=?([^&]*)/g,(function(e,t,n){t&&(a[t]=n)})),a),u}var Yc=function(e){oe(n,e);var t=fe(n);function n(e){var r,o=arguments.length>1&&void 0!==arguments[1]?arguments[1]:{};return ee(this,n),(r=t.call(this)).binaryType="arraybuffer",r.writeBuffer=[],e&&"object"===Z(e)&&(o=e,e=null),e?(e=Kc(e),o.hostname=e.host,o.secure="https"===e.protocol||"wss"===e.protocol,o.port=e.port,e.query&&(o.query=e.query)):o.host&&(o.hostname=Kc(o.host).host),kc(le(r),o),r.secure=null!=o.secure?o.secure:"undefined"!=typeof location&&"https:"===location.protocol,o.hostname&&!o.port&&(o.port=r.secure?"443":"80"),r.hostname=o.hostname||("undefined"!=typeof location?location.hostname:"localhost"),r.port=o.port||("undefined"!=typeof location&&location.port?location.port:r.secure?"443":"80"),r.transports=o.transports||["polling","websocket","webtransport"],r.writeBuffer=[],r.prevBufferLen=0,r.opts=Object.assign({path:"/engine.io",agent:!1,withCredentials:!1,upgrade:!0,timestampParam:"t",rememberUpgrade:!1,addTrailingSlash:!0,rejectUnauthorized:!0,perMessageDeflate:{threshold:1024},transportOptions:{},closeOnBeforeunload:!1},o),r.opts.path=r.opts.path.replace(/\/$/,"")+(r.opts.addTrailingSlash?"/":""),"string"==typeof r.opts.query&&(r.opts.query=function(e){for(var t={},n=e.split("&"),r=0,o=n.length;r<o;r++){var i=n[r].split("=");t[decodeURIComponent(i[0])]=decodeURIComponent(i[1])}return t}(r.opts.query)),r.id=null,r.upgrades=null,r.pingInterval=null,r.pingTimeout=null,r.pingTimeoutTimer=null,"function"==typeof addEventListener&&(r.opts.closeOnBeforeunload&&(r.beforeunloadEventListener=function(){r.transport&&(r.transport.removeAllListeners(),r.transport.close())},addEventListener("beforeunload",r.beforeunloadEventListener,!1)),"localhost"!==r.hostname&&(r.offlineEventListener=function(){r.onClose("transport close",{description:"network connection lost"})},addEventListener("offline",r.offlineEventListener,!1))),r.open(),r}return ne(n,[{key:"createTransport",value:function(e){var t=Object.assign({},this.opts.query);t.EIO=4,t.transport=e,this.id&&(t.sid=this.id);var n=Object.assign({},this.opts,{query:t,socket:this,hostname:this.hostname,secure:this.secure,port:this.port},this.opts.transportOptions[e]);return new Vc[e](n)}},{key:"open",value:function(){var e,t=this;if(this.opts.rememberUpgrade&&n.priorWebsocketSuccess&&-1!==this.transports.indexOf("websocket"))e="websocket";else{if(0===this.transports.length)return void this.setTimeoutFn((function(){t.emitReserved("error","No transports available")}),0);e=this.transports[0]}this.readyState="opening";try{e=this.createTransport(e)}catch(e){return this.transports.shift(),void this.open()}e.open(),this.setTransport(e)}},{key:"setTransport",value:function(e){var t=this;this.transport&&this.transport.removeAllListeners(),this.transport=e,e.on("drain",this.onDrain.bind(this)).on("packet",this.onPacket.bind(this)).on("error",this.onError.bind(this)).on("close",(function(e){return t.onClose("transport close",e)}))}},{key:"probe",value:function(e){var t=this,r=this.createTransport(e),o=!1;n.priorWebsocketSuccess=!1;var i=function(){o||(r.send([{type:"ping",data:"probe"}]),r.once("packet",(function(e){if(!o)if("pong"===e.type&&"probe"===e.data){if(t.upgrading=!0,t.emitReserved("upgrading",r),!r)return;n.priorWebsocketSuccess="websocket"===r.name,t.transport.pause((function(){o||"closed"!==t.readyState&&(f(),t.setTransport(r),r.send([{type:"upgrade"}]),t.emitReserved("upgrade",r),r=null,t.upgrading=!1,t.flush())}))}else{var i=new Error("probe error");i.transport=r.name,t.emitReserved("upgradeError",i)}})))};function a(){o||(o=!0,f(),r.close(),r=null)}var s=function(e){var n=new Error("probe error: "+e);n.transport=r.name,a(),t.emitReserved("upgradeError",n)};function u(){s("transport closed")}function c(){s("socket closed")}function l(e){r&&e.name!==r.name&&a()}var f=function(){r.removeListener("open",i),r.removeListener("error",s),r.removeListener("close",u),t.off("close",c),t.off("upgrading",l)};r.once("open",i),r.once("error",s),r.once("close",u),this.once("close",c),this.once("upgrading",l),-1!==this.upgrades.indexOf("webtransport")&&"webtransport"!==e?this.setTimeoutFn((function(){o||r.open()}),200):r.open()}},{key:"onOpen",value:function(){if(this.readyState="open",n.priorWebsocketSuccess="websocket"===this.transport.name,this.emitReserved("open"),this.flush(),"open"===this.readyState&&this.opts.upgrade)for(var e=0,t=this.upgrades.length;e<t;e++)this.probe(this.upgrades[e])}},{key:"onPacket",value:function(e){if("opening"===this.readyState||"open"===this.readyState||"closing"===this.readyState)switch(this.emitReserved("packet",e),this.emitReserved("heartbeat"),this.resetPingTimeout(),e.type){case"open":this.onHandshake(JSON.parse(e.data));break;case"ping":this.sendPacket("pong"),this.emitReserved("ping"),this.emitReserved("pong");break;case"error":var t=new Error("server error");t.code=e.data,this.onError(t);break;case"message":this.emitReserved("data",e.data),this.emitReserved("message",e.data)}}},{key:"onHandshake",value:function(e){this.emitReserved("handshake",e),this.id=e.sid,this.transport.query.sid=e.sid,this.upgrades=this.filterUpgrades(e.upgrades),this.pingInterval=e.pingInterval,this.pingTimeout=e.pingTimeout,this.maxPayload=e.maxPayload,this.onOpen(),"closed"!==this.readyState&&this.resetPingTimeout()}},{key:"resetPingTimeout",value:function(){var e=this;this.clearTimeoutFn(this.pingTimeoutTimer),this.pingTimeoutTimer=this.setTimeoutFn((function(){e.onClose("ping timeout")}),this.pingInterval+this.pingTimeout),this.opts.autoUnref&&this.pingTimeoutTimer.unref()}},{key:"onDrain",value:function(){this.writeBuffer.splice(0,this.prevBufferLen),this.prevBufferLen=0,0===this.writeBuffer.length?this.emitReserved("drain"):this.flush()}},{key:"flush",value:function(){if("closed"!==this.readyState&&this.transport.writable&&!this.upgrading&&this.writeBuffer.length){var e=this.getWritablePackets();this.transport.send(e),this.prevBufferLen=e.length,this.emitReserved("flush")}}},{key:"getWritablePackets",value:function(){if(!(this.maxPayload&&"polling"===this.transport.name&&this.writeBuffer.length>1))return this.writeBuffer;for(var e,t=1,n=0;n<this.writeBuffer.length;n++){var r=this.writeBuffer[n].data;if(r&&(t+="string"==typeof(e=r)?function(e){for(var t=0,n=0,r=0,o=e.length;r<o;r++)(t=e.charCodeAt(r))<128?n+=1:t<2048?n+=2:t<55296||t>=57344?n+=3:(r++,n+=4);return n}(e):Math.ceil(1.33*(e.byteLength||e.size))),n>0&&t>this.maxPayload)return this.writeBuffer.slice(0,n);t+=2}return this.writeBuffer}},{key:"write",value:function(e,t,n){return this.sendPacket("message",e,t,n),this}},{key:"send",value:function(e,t,n){return this.sendPacket("message",e,t,n),this}},{key:"sendPacket",value:function(e,t,n,r){if("function"==typeof t&&(r=t,t=void 0),"function"==typeof n&&(r=n,n=null),"closing"!==this.readyState&&"closed"!==this.readyState){(n=n||{}).compress=!1!==n.compress;var o={type:e,data:t,options:n};this.emitReserved("packetCreate",o),this.writeBuffer.push(o),r&&this.once("flush",r),this.flush()}}},{key:"close",value:function(){var e=this,t=function(){e.onClose("forced close"),e.transport.close()},n=function n(){e.off("upgrade",n),e.off("upgradeError",n),t()},r=function(){e.once("upgrade",n),e.once("upgradeError",n)};return"opening"!==this.readyState&&"open"!==this.readyState||(this.readyState="closing",this.writeBuffer.length?this.once("drain",(function(){e.upgrading?r():t()})):this.upgrading?r():t()),this}},{key:"onError",value:function(e){n.priorWebsocketSuccess=!1,this.emitReserved("error",e),this.onClose("transport error",e)}},{key:"onClose",value:function(e,t){"opening"!==this.readyState&&"open"!==this.readyState&&"closing"!==this.readyState||(this.clearTimeoutFn(this.pingTimeoutTimer),this.transport.removeAllListeners("close"),this.transport.close(),this.transport.removeAllListeners(),"function"==typeof removeEventListener&&(removeEventListener("beforeunload",this.beforeunloadEventListener,!1),removeEventListener("offline",this.offlineEventListener,!1)),this.readyState="closed",this.id=null,this.emitReserved("close",e,t),this.writeBuffer=[],this.prevBufferLen=0)}},{key:"filterUpgrades",value:function(e){for(var t=[],n=0,r=e.length;n<r;n++)~this.transports.indexOf(e[n])&&t.push(e[n]);return t}}]),n}(_c);Yc.protocol=4;var Zc="function"==typeof ArrayBuffer,Xc=function(e){return"function"==typeof ArrayBuffer.isView?ArrayBuffer.isView(e):e.buffer instanceof ArrayBuffer},Qc=Object.prototype.toString,el="function"==typeof Blob||"undefined"!=typeof Blob&&"[object BlobConstructor]"===Qc.call(Blob),tl="function"==typeof File||"undefined"!=typeof File&&"[object FileConstructor]"===Qc.call(File);function nl(e){return Zc&&(e instanceof ArrayBuffer||Xc(e))||el&&e instanceof Blob||tl&&e instanceof File}function rl(e,t){if(!e||"object"!==Z(e))return!1;if(Array.isArray(e)){for(var n=0,r=e.length;n<r;n++)if(rl(e[n]))return!0;return!1}if(nl(e))return!0;if(e.toJSON&&"function"==typeof e.toJSON&&1===arguments.length)return rl(e.toJSON(),!0);for(var o in e)if(Object.prototype.hasOwnProperty.call(e,o)&&rl(e[o]))return!0;return!1}function ol(e){var t=[],n=e;return n.data=il(e.data,t),n.attachments=t.length,{packet:n,buffers:t}}function il(e,t){if(!e)return e;if(nl(e)){var n={_placeholder:!0,num:t.length};return t.push(e),n}if(Array.isArray(e)){for(var r=new Array(e.length),o=0;o<e.length;o++)r[o]=il(e[o],t);return r}if("object"===Z(e)&&!(e instanceof Date)){var i={};for(var a in e)Object.prototype.hasOwnProperty.call(e,a)&&(i[a]=il(e[a],t));return i}return e}function al(e,t){return e.data=sl(e.data,t),delete e.attachments,e}function sl(e,t){if(!e)return e;if(e&&!0===e._placeholder){if("number"==typeof e.num&&e.num>=0&&e.num<t.length)return t[e.num];throw new Error("illegal attachments")}if(Array.isArray(e))for(var n=0;n<e.length;n++)e[n]=sl(e[n],t);else if("object"===Z(e))for(var r in e)Object.prototype.hasOwnProperty.call(e,r)&&(e[r]=sl(e[r],t));return e}var ul,cl=["connect","connect_error","disconnect","disconnecting","newListener","removeListener"];!function(e){e[e.CONNECT=0]="CONNECT",e[e.DISCONNECT=1]="DISCONNECT",e[e.EVENT=2]="EVENT",e[e.ACK=3]="ACK",e[e.CONNECT_ERROR=4]="CONNECT_ERROR",e[e.BINARY_EVENT=5]="BINARY_EVENT",e[e.BINARY_ACK=6]="BINARY_ACK"}(ul||(ul={}));var ll=function(){function e(t){ee(this,e),this.replacer=t}return ne(e,[{key:"encode",value:function(e){return e.type!==ul.EVENT&&e.type!==ul.ACK||!rl(e)?[this.encodeAsString(e)]:this.encodeAsBinary({type:e.type===ul.EVENT?ul.BINARY_EVENT:ul.BINARY_ACK,nsp:e.nsp,data:e.data,id:e.id})}},{key:"encodeAsString",value:function(e){var t=""+e.type;return e.type!==ul.BINARY_EVENT&&e.type!==ul.BINARY_ACK||(t+=e.attachments+"-"),e.nsp&&"/"!==e.nsp&&(t+=e.nsp+","),null!=e.id&&(t+=e.id),null!=e.data&&(t+=JSON.stringify(e.data,this.replacer)),t}},{key:"encodeAsBinary",value:function(e){var t=ol(e),n=this.encodeAsString(t.packet),r=t.buffers;return r.unshift(n),r}}]),e}();function fl(e){return"[object Object]"===Object.prototype.toString.call(e)}var dl=function(e){oe(n,e);var t=fe(n);function n(e){var r;return ee(this,n),(r=t.call(this)).reviver=e,r}return ne(n,[{key:"add",value:function(e){var t;if("string"==typeof e){if(this.reconstructor)throw new Error("got plaintext data when reconstructing a packet");var r=(t=this.decodeString(e)).type===ul.BINARY_EVENT;r||t.type===ul.BINARY_ACK?(t.type=r?ul.EVENT:ul.ACK,this.reconstructor=new hl(t),0===t.attachments&&de(ie(n.prototype),"emitReserved",this).call(this,"decoded",t)):de(ie(n.prototype),"emitReserved",this).call(this,"decoded",t)}else{if(!nl(e)&&!e.base64)throw new Error("Unknown type: "+e);if(!this.reconstructor)throw new Error("got binary data when not reconstructing a packet");(t=this.reconstructor.takeBinaryData(e))&&(this.reconstructor=null,de(ie(n.prototype),"emitReserved",this).call(this,"decoded",t))}}},{key:"decodeString",value:function(e){var t=0,r={type:Number(e.charAt(0))};if(void 0===ul[r.type])throw new Error("unknown packet type "+r.type);if(r.type===ul.BINARY_EVENT||r.type===ul.BINARY_ACK){for(var o=t+1;"-"!==e.charAt(++t)&&t!=e.length;);var i=e.substring(o,t);if(i!=Number(i)||"-"!==e.charAt(t))throw new Error("Illegal attachments");r.attachments=Number(i)}if("/"===e.charAt(t+1)){for(var a=t+1;++t&&","!==e.charAt(t)&&t!==e.length;);r.nsp=e.substring(a,t)}else r.nsp="/";var s=e.charAt(t+1);if(""!==s&&Number(s)==s){for(var u=t+1;++t;){var c=e.charAt(t);if(null==c||Number(c)!=c){--t;break}if(t===e.length)break}r.id=Number(e.substring(u,t+1))}if(e.charAt(++t)){var l=this.tryParse(e.substr(t));if(!n.isPayloadValid(r.type,l))throw new Error("invalid payload");r.data=l}return r}},{key:"tryParse",value:function(e){try{return JSON.parse(e,this.reviver)}catch(e){return!1}}},{key:"destroy",value:function(){this.reconstructor&&(this.reconstructor.finishedReconstruction(),this.reconstructor=null)}}],[{key:"isPayloadValid",value:function(e,t){switch(e){case ul.CONNECT:return fl(t);case ul.DISCONNECT:return void 0===t;case ul.CONNECT_ERROR:return"string"==typeof t||fl(t);case ul.EVENT:case ul.BINARY_EVENT:return Array.isArray(t)&&("number"==typeof t[0]||"string"==typeof t[0]&&-1===cl.indexOf(t[0]));case ul.ACK:case ul.BINARY_ACK:return Array.isArray(t)}}}]),n}(_c),hl=function(){function e(t){ee(this,e),this.packet=t,this.buffers=[],this.reconPack=t}return ne(e,[{key:"takeBinaryData",value:function(e){if(this.buffers.push(e),this.buffers.length===this.reconPack.attachments){var t=al(this.reconPack,this.buffers);return this.finishedReconstruction(),t}return null}},{key:"finishedReconstruction",value:function(){this.reconPack=null,this.buffers=[]}}]),e}(),pl={__proto__:null,protocol:5,get PacketType(){return ul},Encoder:ll,Decoder:dl};function ml(e,t,n){return e.on(t,n),function(){e.off(t,n)}}var gl=Object.freeze({connect:1,connect_error:1,disconnect:1,disconnecting:1,newListener:1,removeListener:1}),yl=function(e){oe(n,e);var t=fe(n);function n(e,r,o){var i;return ee(this,n),(i=t.call(this)).connected=!1,i.recovered=!1,i.receiveBuffer=[],i.sendBuffer=[],i._queue=[],i._queueSeq=0,i.ids=0,i.acks={},i.flags={},i.io=e,i.nsp=r,o&&o.auth&&(i.auth=o.auth),i._opts=Object.assign({},o),i.io._autoConnect&&i.open(),i}return ne(n,[{key:"disconnected",get:function(){return!this.connected}},{key:"subEvents",value:function(){if(!this.subs){var e=this.io;this.subs=[ml(e,"open",this.onopen.bind(this)),ml(e,"packet",this.onpacket.bind(this)),ml(e,"error",this.onerror.bind(this)),ml(e,"close",this.onclose.bind(this))]}}},{key:"active",get:function(){return!!this.subs}},{key:"connect",value:function(){return this.connected||(this.subEvents(),this.io._reconnecting||this.io.open(),"open"===this.io._readyState&&this.onopen()),this}},{key:"open",value:function(){return this.connect()}},{key:"send",value:function(){for(var e=arguments.length,t=new Array(e),n=0;n<e;n++)t[n]=arguments[n];return t.unshift("message"),this.emit.apply(this,t),this}},{key:"emit",value:function(e){if(gl.hasOwnProperty(e))throw new Error('"'+e.toString()+'" is a reserved event name');for(var t=arguments.length,n=new Array(t>1?t-1:0),r=1;r<t;r++)n[r-1]=arguments[r];if(n.unshift(e),this._opts.retries&&!this.flags.fromQueue&&!this.flags.volatile)return this._addToQueue(n),this;var o={type:ul.EVENT,data:n,options:{}};if(o.options.compress=!1!==this.flags.compress,"function"==typeof n[n.length-1]){var i=this.ids++,a=n.pop();this._registerAckCallback(i,a),o.id=i}return this.flags.volatile&&(!(this.io.engine&&this.io.engine.transport&&this.io.engine.transport.writable)||!this.connected)||(this.connected?(this.notifyOutgoingListeners(o),this.packet(o)):this.sendBuffer.push(o)),this.flags={},this}},{key:"_registerAckCallback",value:function(e,t){var n,r=this,o=null!==(n=this.flags.timeout)&&void 0!==n?n:this._opts.ackTimeout;if(void 0!==o){var i=this.io.setTimeoutFn((function(){delete r.acks[e];for(var n=0;n<r.sendBuffer.length;n++)r.sendBuffer[n].id===e&&r.sendBuffer.splice(n,1);t.call(r,new Error("operation has timed out"))}),o);this.acks[e]=function(){r.io.clearTimeoutFn(i);for(var e=arguments.length,n=new Array(e),o=0;o<e;o++)n[o]=arguments[o];t.apply(r,[null].concat(n))}}else this.acks[e]=t}},{key:"emitWithAck",value:function(e){for(var t=this,n=arguments.length,r=new Array(n>1?n-1:0),o=1;o<n;o++)r[o-1]=arguments[o];var i=void 0!==this.flags.timeout||void 0!==this._opts.ackTimeout;return new Promise((function(n,o){r.push((function(e,t){return i?e?o(e):n(t):n(e)})),t.emit.apply(t,[e].concat(r))}))}},{key:"_addToQueue",value:function(e){var t,n=this;"function"==typeof e[e.length-1]&&(t=e.pop());var r={id:this._queueSeq++,tryCount:0,pending:!1,args:e,flags:Object.assign({fromQueue:!0},this.flags)};e.push((function(e){if(r===n._queue[0]){if(null!==e)r.tryCount>n._opts.retries&&(n._queue.shift(),t&&t(e));else if(n._queue.shift(),t){for(var o=arguments.length,i=new Array(o>1?o-1:0),a=1;a<o;a++)i[a-1]=arguments[a];t.apply(void 0,[null].concat(i))}return r.pending=!1,n._drainQueue()}})),this._queue.push(r),this._drainQueue()}},{key:"_drainQueue",value:function(){if(this.connected&&0!==this._queue.length){var e=this._queue[0];e.pending&&!(arguments.length>0&&void 0!==arguments[0]&&arguments[0])||(e.pending=!0,e.tryCount++,this.flags=e.flags,this.emit.apply(this,e.args))}}},{key:"packet",value:function(e){e.nsp=this.nsp,this.io._packet(e)}},{key:"onopen",value:function(){var e=this;"function"==typeof this.auth?this.auth((function(t){e._sendConnectPacket(t)})):this._sendConnectPacket(this.auth)}},{key:"_sendConnectPacket",value:function(e){this.packet({type:ul.CONNECT,data:this._pid?Object.assign({pid:this._pid,offset:this._lastOffset},e):e})}},{key:"onerror",value:function(e){this.connected||this.emitReserved("connect_error",e)}},{key:"onclose",value:function(e,t){this.connected=!1,delete this.id,this.emitReserved("disconnect",e,t)}},{key:"onpacket",value:function(e){if(e.nsp===this.nsp)switch(e.type){case ul.CONNECT:e.data&&e.data.sid?this.onconnect(e.data.sid,e.data.pid):this.emitReserved("connect_error",new Error("It seems you are trying to reach a Socket.IO server in v2.x with a v3.x client, but they are not compatible (more information here: https://socket.io/docs/v3/migrating-from-2-x-to-3-0/)"));break;case ul.EVENT:case ul.BINARY_EVENT:this.onevent(e);break;case ul.ACK:case ul.BINARY_ACK:this.onack(e);break;case ul.DISCONNECT:this.ondisconnect();break;case ul.CONNECT_ERROR:this.destroy();var t=new Error(e.data.message);t.data=e.data.data,this.emitReserved("connect_error",t)}}},{key:"onevent",value:function(e){var t=e.data||[];null!=e.id&&t.push(this.ack(e.id)),this.connected?this.emitEvent(t):this.receiveBuffer.push(Object.freeze(t))}},{key:"emitEvent",value:function(e){if(this._anyListeners&&this._anyListeners.length){var t,r=we(this._anyListeners.slice());try{for(r.s();!(t=r.n()).done;)t.value.apply(this,e)}catch(e){r.e(e)}finally{r.f()}}de(ie(n.prototype),"emit",this).apply(this,e),this._pid&&e.length&&"string"==typeof e[e.length-1]&&(this._lastOffset=e[e.length-1])}},{key:"ack",value:function(e){var t=this,n=!1;return function(){if(!n){n=!0;for(var r=arguments.length,o=new Array(r),i=0;i<r;i++)o[i]=arguments[i];t.packet({type:ul.ACK,id:e,data:o})}}}},{key:"onack",value:function(e){var t=this.acks[e.id];"function"==typeof t&&(t.apply(this,e.data),delete this.acks[e.id])}},{key:"onconnect",value:function(e,t){this.id=e,this.recovered=t&&this._pid===t,this._pid=t,this.connected=!0,this.emitBuffered(),this.emitReserved("connect"),this._drainQueue(!0)}},{key:"emitBuffered",value:function(){var e=this;this.receiveBuffer.forEach((function(t){return e.emitEvent(t)})),this.receiveBuffer=[],this.sendBuffer.forEach((function(t){e.notifyOutgoingListeners(t),e.packet(t)})),this.sendBuffer=[]}},{key:"ondisconnect",value:function(){this.destroy(),this.onclose("io server disconnect")}},{key:"destroy",value:function(){this.subs&&(this.subs.forEach((function(e){return e()})),this.subs=void 0),this.io._destroy(this)}},{key:"disconnect",value:function(){return this.connected&&this.packet({type:ul.DISCONNECT}),this.destroy(),this.connected&&this.onclose("io client disconnect"),this}},{key:"close",value:function(){return this.disconnect()}},{key:"compress",value:function(e){return this.flags.compress=e,this}},{key:"volatile",get:function(){return this.flags.volatile=!0,this}},{key:"timeout",value:function(e){return this.flags.timeout=e,this}},{key:"onAny",value:function(e){return this._anyListeners=this._anyListeners||[],this._anyListeners.push(e),this}},{key:"prependAny",value:function(e){return this._anyListeners=this._anyListeners||[],this._anyListeners.unshift(e),this}},{key:"offAny",value:function(e){if(!this._anyListeners)return this;if(e){for(var t=this._anyListeners,n=0;n<t.length;n++)if(e===t[n])return t.splice(n,1),this}else this._anyListeners=[];return this}},{key:"listenersAny",value:function(){return this._anyListeners||[]}},{key:"onAnyOutgoing",value:function(e){return this._anyOutgoingListeners=this._anyOutgoingListeners||[],this._anyOutgoingListeners.push(e),this}},{key:"prependAnyOutgoing",value:function(e){return this._anyOutgoingListeners=this._anyOutgoingListeners||[],this._anyOutgoingListeners.unshift(e),this}},{key:"offAnyOutgoing",value:function(e){if(!this._anyOutgoingListeners)return this;if(e){for(var t=this._anyOutgoingListeners,n=0;n<t.length;n++)if(e===t[n])return t.splice(n,1),this}else this._anyOutgoingListeners=[];return this}},{key:"listenersAnyOutgoing",value:function(){return this._anyOutgoingListeners||[]}},{key:"notifyOutgoingListeners",value:function(e){if(this._anyOutgoingListeners&&this._anyOutgoingListeners.length){var t,n=we(this._anyOutgoingListeners.slice());try{for(n.s();!(t=n.n()).done;)t.value.apply(this,e.data)}catch(e){n.e(e)}finally{n.f()}}}}]),n}(_c);function vl(e){this.ms=(e=e||{}).min||100,this.max=e.max||1e4,this.factor=e.factor||2,this.jitter=e.jitter>0&&e.jitter<=1?e.jitter:0,this.attempts=0}vl.prototype.duration=function(){var e=this.ms*Math.pow(this.factor,this.attempts++);if(this.jitter){var t=Math.random(),n=Math.floor(t*this.jitter*e);e=0==(1&Math.floor(10*t))?e-n:e+n}return 0|Math.min(e,this.max)},vl.prototype.reset=function(){this.attempts=0},vl.prototype.setMin=function(e){this.ms=e},vl.prototype.setMax=function(e){this.max=e},vl.prototype.setJitter=function(e){this.jitter=e};var _l=function(e){oe(n,e);var t=fe(n);function n(e,r){var o,i;ee(this,n),(o=t.call(this)).nsps={},o.subs=[],e&&"object"===Z(e)&&(r=e,e=void 0),(r=r||{}).path=r.path||"/socket.io",o.opts=r,kc(le(o),r),o.reconnection(!1!==r.reconnection),o.reconnectionAttempts(r.reconnectionAttempts||Infinity),o.reconnectionDelay(r.reconnectionDelay||1e3),o.reconnectionDelayMax(r.reconnectionDelayMax||5e3),o.randomizationFactor(null!==(i=r.randomizationFactor)&&void 0!==i?i:.5),o.backoff=new vl({min:o.reconnectionDelay(),max:o.reconnectionDelayMax(),jitter:o.randomizationFactor()}),o.timeout(null==r.timeout?2e4:r.timeout),o._readyState="closed",o.uri=e;var a=r.parser||pl;return o.encoder=new a.Encoder,o.decoder=new a.Decoder,o._autoConnect=!1!==r.autoConnect,o._autoConnect&&o.open(),o}return ne(n,[{key:"reconnection",value:function(e){return arguments.length?(this._reconnection=!!e,this):this._reconnection}},{key:"reconnectionAttempts",value:function(e){return void 0===e?this._reconnectionAttempts:(this._reconnectionAttempts=e,this)}},{key:"reconnectionDelay",value:function(e){var t;return void 0===e?this._reconnectionDelay:(this._reconnectionDelay=e,null===(t=this.backoff)||void 0===t||t.setMin(e),this)}},{key:"randomizationFactor",value:function(e){var t;return void 0===e?this._randomizationFactor:(this._randomizationFactor=e,null===(t=this.backoff)||void 0===t||t.setJitter(e),this)}},{key:"reconnectionDelayMax",value:function(e){var t;return void 0===e?this._reconnectionDelayMax:(this._reconnectionDelayMax=e,null===(t=this.backoff)||void 0===t||t.setMax(e),this)}},{key:"timeout",value:function(e){return arguments.length?(this._timeout=e,this):this._timeout}},{key:"maybeReconnectOnOpen",value:function(){!this._reconnecting&&this._reconnection&&0===this.backoff.attempts&&this.reconnect()}},{key:"open",value:function(e){var t=this;if(~this._readyState.indexOf("open"))return this;this.engine=new Yc(this.uri,this.opts);var n=this.engine,r=this;this._readyState="opening",this.skipReconnect=!1;var o=ml(n,"open",(function(){r.onopen(),e&&e()})),i=function(n){t.cleanup(),t._readyState="closed",t.emitReserved("error",n),e?e(n):t.maybeReconnectOnOpen()},a=ml(n,"error",i);if(!1!==this._timeout){var s=this.setTimeoutFn((function(){o(),i(new Error("timeout")),n.close()}),this._timeout);this.opts.autoUnref&&s.unref(),this.subs.push((function(){t.clearTimeoutFn(s)}))}return this.subs.push(o),this.subs.push(a),this}},{key:"connect",value:function(e){return this.open(e)}},{key:"onopen",value:function(){this.cleanup(),this._readyState="open",this.emitReserved("open");var e=this.engine;this.subs.push(ml(e,"ping",this.onping.bind(this)),ml(e,"data",this.ondata.bind(this)),ml(e,"error",this.onerror.bind(this)),ml(e,"close",this.onclose.bind(this)),ml(this.decoder,"decoded",this.ondecoded.bind(this)))}},{key:"onping",value:function(){this.emitReserved("ping")}},{key:"ondata",value:function(e){try{this.decoder.add(e)}catch(e){this.onclose("parse error",e)}}},{key:"ondecoded",value:function(e){var t=this;Uc((function(){t.emitReserved("packet",e)}),this.setTimeoutFn)}},{key:"onerror",value:function(e){this.emitReserved("error",e)}},{key:"socket",value:function(e,t){var n=this.nsps[e];return n?this._autoConnect&&!n.active&&n.connect():(n=new yl(this,e,t),this.nsps[e]=n),n}},{key:"_destroy",value:function(e){for(var t=0,n=Object.keys(this.nsps);t<n.length;t++)if(this.nsps[n[t]].active)return;this._close()}},{key:"_packet",value:function(e){for(var t=this.encoder.encode(e),n=0;n<t.length;n++)this.engine.write(t[n],e.options)}},{key:"cleanup",value:function(){this.subs.forEach((function(e){return e()})),this.subs.length=0,this.decoder.destroy()}},{key:"_close",value:function(){this.skipReconnect=!0,this._reconnecting=!1,this.onclose("forced close"),this.engine&&this.engine.close()}},{key:"disconnect",value:function(){return this._close()}},{key:"onclose",value:function(e,t){this.cleanup(),this.backoff.reset(),this._readyState="closed",this.emitReserved("close",e,t),this._reconnection&&!this.skipReconnect&&this.reconnect()}},{key:"reconnect",value:function(){var e=this;if(this._reconnecting||this.skipReconnect)return this;var t=this;if(this.backoff.attempts>=this._reconnectionAttempts)this.backoff.reset(),this.emitReserved("reconnect_failed"),this._reconnecting=!1;else{var n=this.backoff.duration();this._reconnecting=!0;var r=this.setTimeoutFn((function(){t.skipReconnect||(e.emitReserved("reconnect_attempt",t.backoff.attempts),t.skipReconnect||t.open((function(n){n?(t._reconnecting=!1,t.reconnect(),e.emitReserved("reconnect_error",n)):t.onreconnect()})))}),n);this.opts.autoUnref&&r.unref(),this.subs.push((function(){e.clearTimeoutFn(r)}))}}},{key:"onreconnect",value:function(){var e=this.backoff.attempts;this._reconnecting=!1,this.backoff.reset(),this.emitReserved("reconnect",e)}}]),n}(_c),bl={};function wl(e,t){"object"===Z(e)&&(t=e,e=void 0);var n,r=function(e){var t=arguments.length>1&&void 0!==arguments[1]?arguments[1]:"",n=arguments.length>2?arguments[2]:void 0,r=e;n=n||"undefined"!=typeof location&&location,null==e&&(e=n.protocol+"//"+n.host),"string"==typeof e&&("/"===e.charAt(0)&&(e="/"===e.charAt(1)?n.protocol+e:n.host+e),/^(https?|wss?):\/\//.test(e)||(e=void 0!==n?n.protocol+"//"+e:"https://"+e),r=Kc(e)),r.port||(/^(http|ws)$/.test(r.protocol)?r.port="80":/^(http|ws)s$/.test(r.protocol)&&(r.port="443")),r.path=r.path||"/";var o=-1!==r.host.indexOf(":")?"["+r.host+"]":r.host;return r.id=r.protocol+"://"+o+":"+r.port+t,r.href=r.protocol+"://"+o+(n&&n.port===r.port?"":":"+r.port),r}(e,(t=t||{}).path||"/socket.io"),o=r.source,i=r.id;return t.forceNew||t["force new connection"]||!1===t.multiplex||bl[i]&&r.path in bl[i].nsps?n=new _l(o,t):(bl[i]||(bl[i]=new _l(o,t)),n=bl[i]),r.query&&!t.query&&(t.query=r.queryKey),n.socket(r.path,t)}function Sl(){}function xl(){xl.init.call(this)}function kl(e){return void 0===e._maxListeners?xl.defaultMaxListeners:e._maxListeners}function El(e,t,n,r){var o,i,a;if("function"!=typeof n)throw new TypeError('"listener" argument must be a function');if((i=e._events)?(i.newListener&&(e.emit("newListener",t,n.listener?n.listener:n),i=e._events),a=i[t]):(i=e._events=new Sl,e._eventsCount=0),a){if("function"==typeof a?a=i[t]=r?[n,a]:[a,n]:r?a.unshift(n):a.push(n),!a.warned&&(o=kl(e))&&o>0&&a.length>o){a.warned=!0;var s=new Error("Possible EventEmitter memory leak detected. "+a.length+" "+t+" listeners added. 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i=Rf(n);i||n.corked||n.bufferProcessing||!n.bufferedRequest||Of(e,n),r?At(Cf,e,n,i,o):Cf(e,n,i,o)}}(t,e)},this.writecb=null,this.writelen=0,this.bufferedRequest=null,this.lastBufferedRequest=null,this.pendingcb=0,this.prefinished=!1,this.errorEmitted=!1,this.bufferedRequestCount=0,this.corkedRequestsFree=new Pf(this)}function Ef(e){if(!(this instanceof Ef||this instanceof Ff))return new Ef(e);this._writableState=new kf(e,this),this.writable=!0,e&&("function"==typeof e.write&&(this._write=e.write),"function"==typeof e.writev&&(this._writev=e.writev)),xl.call(this)}function Af(e,t,n,r,o,i,a){t.writelen=r,t.writecb=a,t.writing=!0,t.sync=!0,n?e._writev(o,t.onwrite):e._write(o,i,t.onwrite),t.sync=!1}function Cf(e,t,n,r){n||function(e,t){0===t.length&&t.needDrain&&(t.needDrain=!1,e.emit("drain"))}(e,t),t.pendingcb--,r(),If(e,t)}function Of(e,t){t.bufferProcessing=!0;var n=t.bufferedRequest;if(e._writev&&n&&n.next){var r=new Array(t.bufferedRequestCount),o=t.corkedRequestsFree;o.entry=n;for(var i=0;n;)r[i]=n,n=n.next,i+=1;Af(e,t,!0,t.length,r,"",o.finish),t.pendingcb++,t.lastBufferedRequest=null,o.next?(t.corkedRequestsFree=o.next,o.next=null):t.corkedRequestsFree=new Pf(t)}else{for(;n;){var a=n.chunk;if(Af(e,t,!1,t.objectMode?1:a.length,a,n.encoding,n.callback),n=n.next,t.writing)break}null===n&&(t.lastBufferedRequest=null)}t.bufferedRequestCount=0,t.bufferedRequest=n,t.bufferProcessing=!1}function Rf(e){return e.ending&&0===e.length&&null===e.bufferedRequest&&!e.finished&&!e.writing}function Nf(e,t){t.prefinished||(t.prefinished=!0,e.emit("prefinish"))}function If(e,t){var n=Rf(t);return n&&(0===t.pendingcb?(Nf(e,t),t.finished=!0,e.emit("finish")):Nf(e,t)),n}function Pf(e){var t=this;this.next=null,this.entry=null,this.finish=function(n){var r=t.entry;for(t.entry=null;r;){var o=r.callback;e.pendingcb--,o(n),r=r.next}e.corkedRequestsFree?e.corkedRequestsFree.next=t:e.corkedRequestsFree=t}}uf.prototype.read=function(e){af("read",e),e=parseInt(e,10);var t=this._readableState,n=e;if(0!==e&&(t.emittedReadable=!1),0===e&&t.needReadable&&(t.length>=t.highWaterMark||t.ended))return af("read: emitReadable",t.length,t.ended),0===t.length&&t.ended?_f(this):df(this),null;if(0===(e=ff(e,t))&&t.ended)return 0===t.length&&_f(this),null;var r,o=t.needReadable;return af("need readable",o),(0===t.length||t.length-e<t.highWaterMark)&&af("length less than watermark",o=!0),t.ended||t.reading?af("reading or ended",o=!1):o&&(af("do read"),t.reading=!0,t.sync=!0,0===t.length&&(t.needReadable=!0),this._read(t.highWaterMark),t.sync=!1,t.reading||(e=ff(n,t))),null===(r=e>0?vf(e,t):null)?(t.needReadable=!0,e=0):t.length-=e,0===t.length&&(t.ended||(t.needReadable=!0),n!==e&&t.ended&&_f(this)),null!==r&&this.emit("data",r),r},uf.prototype._read=function(e){this.emit("error",new Error("not implemented"))},uf.prototype.pipe=function(e,t){var n=this,r=this._readableState;switch(r.pipesCount){case 0:r.pipes=e;break;case 1:r.pipes=[r.pipes,e];break;default:r.pipes.push(e)}r.pipesCount+=1,af("pipe count=%d opts=%j",r.pipesCount,t);var o=t&&!1===t.end?c:a;function i(e){af("onunpipe"),e===n&&c()}function a(){af("onend"),e.end()}r.endEmitted?At(o):n.once("end",o),e.on("unpipe",i);var s=function(e){return function(){var t=e._readableState;af("pipeOnDrain",t.awaitDrain),t.awaitDrain&&t.awaitDrain--,0===t.awaitDrain&&e.listeners("data").length&&(t.flowing=!0,yf(e))}}(n);e.on("drain",s);var u=!1;function c(){af("cleanup"),e.removeListener("close",h),e.removeListener("finish",p),e.removeListener("drain",s),e.removeListener("error",d),e.removeListener("unpipe",i),n.removeListener("end",a),n.removeListener("end",c),n.removeListener("data",f),u=!0,!r.awaitDrain||e._writableState&&!e._writableState.needDrain||s()}var l=!1;function f(t){af("ondata"),l=!1,!1!==e.write(t)||l||((1===r.pipesCount&&r.pipes===e||r.pipesCount>1&&-1!==wf(r.pipes,e))&&!u&&(af("false write response, pause",n._readableState.awaitDrain),n._readableState.awaitDrain++,l=!0),n.pause())}function d(t){af("onerror",t),m(),e.removeListener("error",d),0===e.listeners("error").length&&e.emit("error",t)}function h(){e.removeListener("finish",p),m()}function p(){af("onfinish"),e.removeListener("close",h),m()}function m(){af("unpipe"),n.unpipe(e)}return n.on("data",f),function(e,t,n){if("function"==typeof e.prependListener)return e.prependListener(t,n);e._events&&e._events[t]?Array.isArray(e._events[t])?e._events[t].unshift(n):e._events[t]=[n,e._events[t]]:e.on(t,n)}(e,"error",d),e.once("close",h),e.once("finish",p),e.emit("pipe",n),r.flowing||(af("pipe resume"),n.resume()),e},uf.prototype.unpipe=function(e){var t=this._readableState;if(0===t.pipesCount)return this;if(1===t.pipesCount)return e&&e!==t.pipes||(e||(e=t.pipes),t.pipes=null,t.pipesCount=0,t.flowing=!1,e&&e.emit("unpipe",this)),this;if(!e){var n=t.pipes,r=t.pipesCount;t.pipes=null,t.pipesCount=0,t.flowing=!1;for(var o=0;o<r;o++)n[o].emit("unpipe",this);return this}var i=wf(t.pipes,e);return-1===i||(t.pipes.splice(i,1),t.pipesCount-=1,1===t.pipesCount&&(t.pipes=t.pipes[0]),e.emit("unpipe",this)),this},uf.prototype.addListener=uf.prototype.on=function(e,t){var n=xl.prototype.on.call(this,e,t);if("data"===e)!1!==this._readableState.flowing&&this.resume();else if("readable"===e){var r=this._readableState;r.endEmitted||r.readableListening||(r.readableListening=r.needReadable=!0,r.emittedReadable=!1,r.reading?r.length&&df(this):At(mf,this))}return n},uf.prototype.resume=function(){var e=this._readableState;return e.flowing||(af("resume"),e.flowing=!0,function(e,t){t.resumeScheduled||(t.resumeScheduled=!0,At(gf,e,t))}(this,e)),this},uf.prototype.pause=function(){return af("call pause flowing=%j",this._readableState.flowing),!1!==this._readableState.flowing&&(af("pause"),this._readableState.flowing=!1,this.emit("pause")),this},uf.prototype.wrap=function(e){var t=this._readableState,n=!1,r=this;for(var o in e.on("end",(function(){if(af("wrapped end"),t.decoder&&!t.ended){var e=t.decoder.end();e&&e.length&&r.push(e)}r.push(null)})),e.on("data",(function(o){af("wrapped data"),t.decoder&&(o=t.decoder.write(o)),t.objectMode&&null==o||(t.objectMode||o&&o.length)&&(r.push(o)||(n=!0,e.pause()))})),e)void 0===this[o]&&"function"==typeof e[o]&&(this[o]=function(t){return function(){return e[t].apply(e,arguments)}}(o));return function(t,n){for(var o=0,i=t.length;o<i;o++)e.on(a=t[o],r.emit.bind(r,a));var a}(["error","close","destroy","pause","resume"]),r._read=function(t){af("wrapped _read",t),n&&(n=!1,e.resume())},r},uf._fromList=vf,Ef.WritableState=kf,Rl(Ef,xl),kf.prototype.getBuffer=function(){for(var e=this.bufferedRequest,t=[];e;)t.push(e),e=e.next;return t},Ef.prototype.pipe=function(){this.emit("error",new Error("Cannot pipe, not readable"))},Ef.prototype.write=function(e,t,n){var r=this._writableState,o=!1;return"function"==typeof t&&(n=t,t=null),Xt.isBuffer(e)?t="buffer":t||(t=r.defaultEncoding),"function"!=typeof n&&(n=Sf),r.ended?function(e,t){var n=new Error("write after end");e.emit("error",n),At(t,n)}(this,n):function(e,t,n,r){var o=!0,i=!1;return null===n?i=new TypeError("May not write null values to stream"):Xt.isBuffer(n)||"string"==typeof n||void 0===n||t.objectMode||(i=new TypeError("Invalid non-string/buffer chunk")),i&&(e.emit("error",i),At(r,i),o=!1),o}(this,r,e,n)&&(r.pendingcb++,o=function(e,t,n,r,o){n=function(e,t,n){return e.objectMode||!1===e.decodeStrings||"string"!=typeof t||(t=Xt.from(t,n)),t}(t,n,r),Xt.isBuffer(n)&&(r="buffer");var i=t.objectMode?1:n.length;t.length+=i;var a=t.length<t.highWaterMark;if(a||(t.needDrain=!0),t.writing||t.corked){var s=t.lastBufferedRequest;t.lastBufferedRequest=new xf(n,r,o),s?s.next=t.lastBufferedRequest:t.bufferedRequest=t.lastBufferedRequest,t.bufferedRequestCount+=1}else Af(e,t,!1,i,n,r,o);return a}(this,r,e,t,n)),o},Ef.prototype.cork=function(){this._writableState.corked++},Ef.prototype.uncork=function(){var e=this._writableState;e.corked&&(e.corked--,e.writing||e.corked||e.finished||e.bufferProcessing||!e.bufferedRequest||Of(this,e))},Ef.prototype.setDefaultEncoding=function(e){if("string"==typeof e&&(e=e.toLowerCase()),!(["hex","utf8","utf-8","ascii","binary","base64","ucs2","ucs-2","utf16le","utf-16le","raw"].indexOf((e+"").toLowerCase())>-1))throw new TypeError("Unknown encoding: "+e);return this._writableState.defaultEncoding=e,this},Ef.prototype._write=function(e,t,n){n(new Error("not implemented"))},Ef.prototype._writev=null,Ef.prototype.end=function(e,t,n){var r=this._writableState;"function"==typeof e?(n=e,e=null,t=null):"function"==typeof t&&(n=t,t=null),null!=e&&this.write(e,t),r.corked&&(r.corked=1,this.uncork()),r.ending||r.finished||function(e,t,n){t.ending=!0,If(e,t),n&&(t.finished?At(n):e.once("finish",n)),t.ended=!0,e.writable=!1}(this,r,n)},Rl(Ff,uf);for(var Tf=Object.keys(Ef.prototype),Mf=0;Mf<Tf.length;Mf++){var jf=Tf[Mf];Ff.prototype[jf]||(Ff.prototype[jf]=Ef.prototype[jf])}function Ff(e){if(!(this instanceof Ff))return new Ff(e);uf.call(this,e),Ef.call(this,e),e&&!1===e.readable&&(this.readable=!1),e&&!1===e.writable&&(this.writable=!1),this.allowHalfOpen=!0,e&&!1===e.allowHalfOpen&&(this.allowHalfOpen=!1),this.once("end",Lf)}function Lf(){this.allowHalfOpen||this._writableState.ended||At(Df,this)}function Df(e){e.end()}function qf(e){this.afterTransform=function(t,n){return function(e,t,n){var r=e._transformState;r.transforming=!1;var o=r.writecb;if(!o)return e.emit("error",new Error("no writecb in Transform class"));r.writechunk=null,r.writecb=null,null!=n&&e.push(n),o(t);var i=e._readableState;i.reading=!1,(i.needReadable||i.length<i.highWaterMark)&&e._read(i.highWaterMark)}(e,t,n)},this.needTransform=!1,this.transforming=!1,this.writecb=null,this.writechunk=null,this.writeencoding=null}function Bf(e){if(!(this instanceof Bf))return new Bf(e);Ff.call(this,e),this._transformState=new qf(this);var t=this;this._readableState.needReadable=!0,this._readableState.sync=!1,e&&("function"==typeof e.transform&&(this._transform=e.transform),"function"==typeof e.flush&&(this._flush=e.flush)),this.once("prefinish",(function(){"function"==typeof this._flush?this._flush((function(e){Uf(t,e)})):Uf(t)}))}function Uf(e,t){if(t)return e.emit("error",t);var n=e._transformState;if(e._writableState.length)throw new Error("Calling transform done when ws.length != 0");if(n.transforming)throw new Error("Calling transform done when still transforming");return e.push(null)}function zf(e){if(!(this instanceof zf))return new zf(e);Bf.call(this,e)}function Gf(){xl.call(this)}function Hf(e){return e.replace(/%([0-9A-Fa-f]{2})/g,(function(e,t){return String.fromCharCode(parseInt(t,16))}))}function Wf(e,t){return String(t).replace(e,(function(e){var t=e.charCodeAt(0).toString(16).toUpperCase().padStart(2,"0");return"%".concat(t)}))}function Vf(e){return Wf(/[\n;\r\t=%&,\x00-\x1f\x7f-\xff]/g,e)}function $f(e){return Wf(/[\n\r\t%\x00-\x1f\x7f-\xff]/g,e)}function Jf(e){if(!e||!e.length||"."===e)return{};var t={};return e.replace(/\r?\n$/,"").split(";").forEach((function(e){var n,r=e.split("=",2);if(r[1]&&r[1].length){r[0]=r[0].trim();var o=t[r[0].trim()];o||(t[r[0]]=o=[]),(n=o).push.apply(n,me(r[1].split(",").map((function(e){return e.trim()})).map(Hf)))}})),t}function Kf(e){var t=e.split("\t").map((function(e){return"."===e||""===e?null:e}));return{seq_id:t[0]&&Hf(t[0]),source:t[1]&&Hf(t[1]),type:t[2]&&Hf(t[2]),start:null===t[3]?null:parseInt(t[3],10),end:null===t[4]?null:parseInt(t[4],10),score:null===t[5]?null:parseFloat(t[5]),strand:t[6],phase:t[7],attributes:null===t[8]?null:Jf(t[8])}}function Yf(e){var t=/^\s*##\s*(\S+)\s*(.*)/.exec(e);if(!t)return null;var n=he(t,2)[1],r=he(t,3)[2],o={directive:n};if(r.length&&(r=r.replace(/\r?\n$/,""),o.value=r),"sequence-region"===n){var i=r.split(/\s+/,3);return K(K({},o),{},{seq_id:i[0],start:i[1]&&i[1].replace(/\D/g,""),end:i[2]&&i[2].replace(/\D/g,"")})}if("genome-build"===n){var a=he(r.split(/\s+/,2),2),s=a[0],u=a[1];return K(K({},o),{},{source:s,buildName:u})}return o}function Zf(e){var t=[];return Object.entries(e).forEach((function(e){var n,r=he(e,2),o=r[0],i=r[1];i&&(n=i.hasOwnProperty("toString")?Vf(i.toString()):Array.isArray(i)?i.map(Vf).join(","):Vf(i),t.push("".concat(Vf(o),"=").concat(n)))})),t.length?t.join(";"):"."}function Xf(e,t){var n=null==e.attributes?".":Zf(e.attributes),r=[null===e.seq_id?".":$f(e.seq_id),null===e.source?".":$f(e.source),null===e.type?".":$f(e.type),null===e.start?".":$f(e.start),null===e.end?".":$f(e.end),null===e.score?".":$f(e.score),null===e.strand?".":$f(e.strand),null===e.phase?".":$f(e.phase),n],o="".concat(r.join("\t"),"\n");return t[o]?"":(t[o]=!0,o)}function Qf(e,t){if(Array.isArray(e))return e.map((function(e){return Qf(e,t)})).join("");var n,r=[Xf(e,t)];return void 0!==(n=e).child_features&&void 0!==n.derived_features&&r.push.apply(r,me(e.child_features.map((function(e){return Qf(e,t)}))).concat(me(e.derived_features.map((function(e){return Qf(e,t)}))))),r.join("")}function ed(e){return Qf(e,{})}function td(e){var t="##".concat(e.directive);return e.value&&(t+=" ".concat(e.value)),t+"\n"}function nd(e){return"# ".concat(e.comment,"\n")}function rd(e){return">".concat(e.id).concat(e.description?" ".concat(e.description):"","\n").concat(e.sequence,"\n")}function od(e){function t(e){return"attributes"in e?ed(e):"directive"in e?td(e):"sequence"in e?rd(e):"comment"in e?nd(e):"# (invalid item found during format)\n"}return Array.isArray(e)?e.map(t):t(e)}Rl(Bf,Ff),Bf.prototype.push=function(e,t){return this._transformState.needTransform=!1,Ff.prototype.push.call(this,e,t)},Bf.prototype._transform=function(e,t,n){throw new Error("Not implemented")},Bf.prototype._write=function(e,t,n){var r=this._transformState;if(r.writecb=n,r.writechunk=e,r.writeencoding=t,!r.transforming){var o=this._readableState;(r.needTransform||o.needReadable||o.length<o.highWaterMark)&&this._read(o.highWaterMark)}},Bf.prototype._read=function(e){var t=this._transformState;null!==t.writechunk&&t.writecb&&!t.transforming?(t.transforming=!0,this._transform(t.writechunk,t.writeencoding,t.afterTransform)):t.needTransform=!0},Rl(zf,Bf),zf.prototype._transform=function(e,t,n){n(null,e)},Rl(Gf,xl),Gf.Readable=uf,Gf.Writable=Ef,Gf.Duplex=Ff,Gf.Transform=Bf,Gf.PassThrough=zf,Gf.Stream=Gf,Gf.prototype.pipe=function(e,t){var n=this;function r(t){e.writable&&!1===e.write(t)&&n.pause&&n.pause()}function o(){n.readable&&n.resume&&n.resume()}n.on("data",r),e.on("drain",o),e._isStdio||t&&!1===t.end||(n.on("end",a),n.on("close",s));var i=!1;function a(){i||(i=!0,e.end())}function s(){i||(i=!0,"function"==typeof e.destroy&&e.destroy())}function u(e){if(c(),0===xl.listenerCount(this,"error"))throw e}function c(){n.removeListener("data",r),e.removeListener("drain",o),n.removeListener("end",a),n.removeListener("close",s),n.removeListener("error",u),e.removeListener("error",u),n.removeListener("end",c),n.removeListener("close",c),e.removeListener("close",c)}return n.on("error",u),e.on("error",u),n.on("end",c),n.on("close",c),e.on("close",c),e.emit("pipe",n),e};var id={__proto__:null,unescape:Hf,escape:Vf,escapeColumn:$f,parseAttributes:Jf,parseFeature:Kf,parseDirective:Yf,formatAttributes:Zf,formatFeature:ed,formatDirective:td,formatComment:nd,formatSequence:rd,formatItem:od},ad=function(){function e(t){ee(this,e),this.seqCallback=t,this.currentSequence=void 0}return ne(e,[{key:"addLine",value:function(e){var t=/^>\s*(\S+)\s*(.*)/.exec(e);t?(this._flush(),this.currentSequence={id:t[1],sequence:""},t[2]&&(this.currentSequence.description=t[2].trim())):this.currentSequence&&/\S/.test(e)&&(this.currentSequence.sequence+=e.replace(/\s/g,""))}},{key:"_flush",value:function(){this.currentSequence&&this.seqCallback(this.currentSequence)}},{key:"finish",value:function(){this._flush()}}]),e}(),sd=function(){function e(t){ee(this,e),this.fastaParser=void 0,this.eof=!1,this.lineNumber=0,this._underConstructionTopLevel=[],this._underConstructionById={},this._completedReferences={},this._underConstructionOrphans={};var n=function(){};this.featureCallback=t.featureCallback||n,this.endCallback=t.endCallback||n,this.commentCallback=t.commentCallback||n,this.errorCallback=t.errorCallback||n,this.directiveCallback=t.directiveCallback||n,this.sequenceCallback=t.sequenceCallback||n,this.bufferSize=void 0===t.bufferSize?1e3:t.bufferSize}return ne(e,[{key:"addLine",value:function(e){if(this.fastaParser)this.fastaParser.addLine(e);else if(!this.eof)if(this.lineNumber+=1,/^\s*[^#\s>]/.test(e))this._bufferLine(e);else{var t=/^\s*(#+)(.*)/.exec(e);if(t){var n=he(t,2)[1],r=he(t,3)[2];if(3===n.length)this._emitAllUnderConstructionFeatures();else if(2===n.length){var o=Yf(e);o&&("FASTA"===o.directive?(this._emitAllUnderConstructionFeatures(),this.eof=!0,this.fastaParser=new ad(this.sequenceCallback)):this._emitItem(o))}else r=r.replace(/\s*/,""),this._emitItem({comment:r})}else if(/^\s*$/.test(e));else{if(!/^\s*>/.test(e)){var i=e.replace(/\r?\n?$/g,"");throw new Error("GFF3 parse error.  Cannot parse '".concat(i,"'."))}this._emitAllUnderConstructionFeatures(),this.eof=!0,this.fastaParser=new ad(this.sequenceCallback),this.fastaParser.addLine(e)}}}},{key:"finish",value:function(){this._emitAllUnderConstructionFeatures(),this.fastaParser&&this.fastaParser.finish(),this.endCallback()}},{key:"_emitItem",value:function(e){Array.isArray(e)?this.featureCallback(e):"directive"in e?this.directiveCallback(e):"comment"in e&&this.commentCallback(e)}},{key:"_enforceBufferSizeLimit",value:function(){for(var e=this,t=arguments.length>0&&void 0!==arguments[0]?arguments[0]:0,n=function t(n){n&&Array.isArray(n)&&n[0].attributes&&n[0].attributes.ID&&n[0].attributes.ID[0]&&(n[0].attributes.ID.forEach((function(t){delete e._underConstructionById[t],delete e._completedReferences[t]})),n.forEach((function(e){e.child_features&&e.child_features.forEach((function(e){return t(e)})),e.derived_features&&e.derived_features.forEach((function(e){return t(e)}))})))};this._underConstructionTopLevel.length+t>this.bufferSize;){var r=this._underConstructionTopLevel.shift();r&&(this._emitItem(r),n(r))}}},{key:"_emitAllUnderConstructionFeatures",value:function(){if(this._underConstructionTopLevel.forEach(this._emitItem.bind(this)),this._underConstructionTopLevel=[],this._underConstructionById={},this._completedReferences={},Array.from(Object.values(this._underConstructionOrphans)).length)throw new Error("some features reference other features that do not exist in the file (or in the same '###' scope). ".concat(JSON.stringify(this._underConstructionOrphans)))}},{key:"_bufferLine",value:function(e){var t,n,r,o=this,i=K(K({},Kf(e)),{},{child_features:[],derived_features:[]}),a=(null===(t=i.attributes)||void 0===t?void 0:t.ID)||[],s=(null===(n=i.attributes)||void 0===n?void 0:n.Parent)||[],u=(null===(r=i.attributes)||void 0===r?void 0:r.Derives_from)||[];if(a.length||s.length||u.length){var c=void 0;a.forEach((function(e){var t=o._underConstructionById[e];t?(t[t.length-1].type!==i.type&&o._parseError('multi-line feature "'.concat(e,'" has inconsistent types: "').concat(i.type,'", "').concat(t[t.length-1].type,'"')),t.push(i),c=t):(c=[i],o._enforceBufferSizeLimit(1),s.length||u.length||o._underConstructionTopLevel.push(c),o._underConstructionById[e]=c,o._resolveReferencesTo(c,e))})),this._resolveReferencesFrom(c||[i],{Parent:s,Derives_from:u},a)}else this._emitItem([i])}},{key:"_resolveReferencesTo",value:function(e,t){var n=this._underConstructionOrphans[t];n&&(e.forEach((function(e){var t;(t=e.child_features).push.apply(t,me(n.Parent))})),e.forEach((function(e){var t;(t=e.derived_features).push.apply(t,me(n.Derives_from))})),delete this._underConstructionOrphans[t])}},{key:"_parseError",value:function(e){this.eof=!0,this.errorCallback("".concat(this.lineNumber,": ").concat(e))}},{key:"_resolveReferencesFrom",value:function(e,t,n){var r=this;function o(e,t,n){var r=e[t];r||(e[t]=r={});var o=r[n]||!1;return r[n]=!0,o}t.Parent.forEach((function(t){var i=r._underConstructionById[t];if(i)n.filter((function(e){return o(r._completedReferences,e,"Parent,".concat(t))})).length||i.forEach((function(t){t.child_features.push(e)}));else{var a=r._underConstructionOrphans[t];a||(r._underConstructionOrphans[t]=a={Parent:[],Derives_from:[]}),a.Parent.push(e)}})),t.Derives_from.forEach((function(t){var i=r._underConstructionById[t];if(i)n.filter((function(e){return o(r._completedReferences,e,"Derives_from,".concat(t))})).length||i.forEach((function(t){t.derived_features.push(e)}));else{var a=r._underConstructionOrphans[t];a||(r._underConstructionOrphans[t]=a={Parent:[],Derives_from:[]}),a.Derives_from.push(e)}}))}}]),e}();function ud(e){qt&&At?At(e):e()}function cd(e){var t=K({encoding:"utf8",parseFeatures:!0,parseDirectives:!1,parseSequences:!0,parseComments:!1,bufferSize:1e3},e);return e.parseAll&&(t.parseFeatures=!0,t.parseDirectives=!0,t.parseComments=!0,t.parseSequences=!0),t}var ld=function(e){oe(n,e);var t=fe(n);function n(){var e,r=arguments.length>0&&void 0!==arguments[0]?arguments[0]:{};ee(this,n),(e=t.call(this,{objectMode:!0})).textBuffer="";var o=cd(r);e.encoding=r.encoding||"utf8",e.decoder=new tf;var i=e.push.bind(le(e));return e.parser=new sd({featureCallback:o.parseFeatures?i:void 0,directiveCallback:o.parseDirectives?i:void 0,commentCallback:o.parseComments?i:void 0,sequenceCallback:o.parseSequences?i:void 0,errorCallback:function(t){return e.emit("error",t)},bufferSize:o.bufferSize}),e}return ne(n,[{key:"_addLine",value:function(e){e&&this.parser.addLine(e)}},{key:"_nextText",value:function(e){var t=this,n=(this.textBuffer+e).split(/\r?\n/);this.textBuffer=n.pop()||"",n.forEach((function(e){return t._addLine(e)}))}},{key:"_transform",value:function(e,t,n){this._nextText(this.decoder.write(e)),ud(n)}},{key:"_flush",value:function(e){this.decoder.end&&this._nextText(this.decoder.end()),null!=this.textBuffer&&this._addLine(this.textBuffer),this.parser.finish(),ud(e)}}]),n}(Bf),fd=function(e){oe(n,e);var t=fe(n);function n(){var e,r=arguments.length>0&&void 0!==arguments[0]?arguments[0]:{};return ee(this,n),(e=t.call(this,Object.assign(r,{objectMode:!0}))).linesSinceLastSyncMark=0,e.haveWeEmittedData=!1,e.fastaMode=!1,e.minLinesBetweenSyncMarks=r.minSyncLines||100,e.insertVersionDirective=r.insertVersionDirective||!1,e}return ne(n,[{key:"_transform",value:function(e,t,n){var r;if(!this.haveWeEmittedData&&this.insertVersionDirective){var o=Array.isArray(e)?e[0]:e;"directive"in o&&"gff-version"!==o.directive&&this.push("##gff-version 3\n")}if("sequence"in e&&!this.fastaMode&&(this.push("##FASTA\n"),this.fastaMode=!0),r=Array.isArray(e)?e.map(od).join(""):od(e),this.push(r),this.linesSinceLastSyncMark>=this.minLinesBetweenSyncMarks)this.push("###\n"),this.linesSinceLastSyncMark=0;else{for(var i=0,a=0;a<r.length;a+=1)"\n"===r[a]&&(i+=1);this.linesSinceLastSyncMark+=i}this.haveWeEmittedData=!0,ud(n)}}]),n}(Bf),dd={parseStream:function(){return new ld(arguments.length>0&&void 0!==arguments[0]?arguments[0]:{})},parseStringSync:function(e){if(!e)return[];var t=cd(arguments.length>1&&void 0!==arguments[1]?arguments[1]:{}),n=[],r=n.push.bind(n),o=new sd({featureCallback:t.parseFeatures?r:void 0,directiveCallback:t.parseDirectives?r:void 0,commentCallback:t.parseComments?r:void 0,sequenceCallback:t.parseSequences?r:void 0,bufferSize:Infinity,errorCallback:function(e){throw e}});return e.split(/\r?\n/).forEach(o.addLine.bind(o)),o.finish(),n},formatSync:function(e){var t=[],n=[];e.forEach((function(e){"sequence"in e?n.push(e):t.push(e)}));var r=t.map(od).join("");return n.length&&(r+="##FASTA\n",r+=n.map(rd).join("")),r},formatStream:function(){return new fd(arguments.length>0&&void 0!==arguments[0]?arguments[0]:{})},formatFile:function(e,t){var n=K({insertVersionDirective:!0},arguments.length>2&&void 0!==arguments[2]?arguments[2]:{});return new Promise((function(r,o){e.pipe(new fd(n)).on("end",(function(){return r(null)})).on("error",o).pipe(t)}))},util:id};async function hd(e,t,n){const r=dd.parseStringSync(t,{parseSequences:!0,parseComments:!0,parseDirectives:!1,parseFeatures:!0});if(0===r.length)throw new Error("No features found in GFF3 file");let o=0,i=n.assemblies.get(e);i||(i=n.addAssembly(e,"InMemoryFileDriver"));for(const e of r)if(Array.isArray(e)){const t=nr.gff3ToAnnotationFeature(e),n=i.refSeqs.get(t.refSeq)??i.addRefSeq(t.refSeq,t.refSeq);n.features.has(t._id)||n.addFeature(t)}else if("comment"in e)i.addComment(e.comment);else{o++;let t=i.refSeqs.get(e.id);t||(t=i.addRefSeq(e.id,e.id,e.description)),e.description&&!t.description&&t.setDescription(e.description),t.addSequence({start:0,stop:e.sequence.length,sequence:e.sequence})}if(0===o)throw new Error("No embedded FASTA section found in GFF3");const a=await pd(i);return n.addCheckResults(a),i}async function pd(e){const t=[];for(const n of e.refSeqs.values())for(const e of n.features.values())for(const r of z.checkRegistry.getChecks().values()){const o=await r.checkFeature(u.getSnapshot(e),((e,t)=>Promise.resolve(n.getSequence(e,t))));t.push(...o)}return t}async function md(e,t){let n;try{n=await e.text()}catch{n=""}return`${t?`${t} — `:""}${e.status} ${e.statusText}${n?` (${n})`:""}`}var gd={},yd=Ju.exports;Object.defineProperty(gd,"__esModule",{value:!0});var vd=gd.default=void 0;vd=gd.default=(0,yd(Ku).default)((0,N.default.jsx)("path",{d:"M3.9 12c0-1.71 1.39-3.1 3.1-3.1h4V7H7c-2.76 0-5 2.24-5 5s2.24 5 5 5h4v-1.9H7c-1.71 0-3.1-1.39-3.1-3.1zM8 13h8v-2H8v2zm9-6h-4v1.9h4c1.71 0 3.1 1.39 3.1 3.1s-1.39 3.1-3.1 3.1h-4V17h4c2.76 0 5-2.24 5-5s-2.24-5-5-5z"}),"Link");var _d={},bd=Ju.exports;Object.defineProperty(_d,"__esModule",{value:!0});var wd=_d.default=void 0;wd=_d.default=(0,bd(Ku).default)((0,N.default.jsx)("path",{d:"M19 6.41 17.59 5 12 10.59 6.41 5 5 6.41 10.59 12 5 17.59 6.41 19 12 13.41 17.59 19 19 17.59 13.41 12z"}),"Close");const Sd=m.makeStyles()((e=>({dialogTitle:{background:e.palette.primary.main,color:e.palette.primary.contrastText,padding:e.spacing(2)},closeButton:{position:"absolute",right:e.spacing(1),top:e.spacing(1.5),color:e.palette.primary.contrastText}}))),xd=p.observer((function(e){const{classes:t}=Sd(),{handleClose:n,title:r,...o}=e;return M.default.createElement(h.Dialog,{...o,header:M.default.createElement(M.default.Fragment,null,M.default.createElement(c.DialogTitle,{className:t.dialogTitle},r),M.default.createElement(c.IconButton,{"aria-label":"close",onClick:n,className:t.closeButton},M.default.createElement(wd,null)))})}));var kd;function Ed({changeManager:e,handleClose:t,session:n}){const{internetAccounts:o}=u.getRoot(n),{notify:i}=n,a=o.filter((e=>"ApolloInternetAccount"===e.type));if(0===a.length)throw new Error("No Apollo internet account found");const[s,l]=d.useState(""),[f,h]=d.useState(""),[p,m]=d.useState(!1),[g,y]=d.useState(null),[v,_]=d.useState(kd.GFF3),[b,w]=d.useState(!0),[S,x]=d.useState(!1),[k,E]=d.useState(a[0]),[A,C]=d.useState(""),[O,R]=d.useState(""),[N,I]=d.useState(""),[j,F]=d.useState(!1);let L=!1;try{const e=new URL(A);"http:"!==e.protocol&&"https:"!==e.protocol||(L=!0)}catch{}let D=!1;try{const e=new URL(O);"http:"!==e.protocol&&"https:"!==e.protocol||(D=!0)}catch{}let q=!1;try{const e=new URL(N);"http:"!==e.protocol&&"https:"!==e.protocol||(q=!0)}catch{}return M.default.createElement(xd,{open:!0,maxWidth:!1,"data-testid":"add-assembly-dialog",title:"Add new assembly",handleClose:t},j?M.default.createElement(T.default,null):null,M.default.createElement("form",{onSubmit:async function(r){r.preventDefault(),h(""),x(!0),F(!0),i(`Assembly "${s}" is being added`,"info"),t(),r.preventDefault();const{jobsManager:o}=n,a=new AbortController,u={name:`UploadAssemblyFile for ${s}`,statusMessage:"Pre-validating",progressPct:0,cancelCallback:()=>{a.abort(),o.abortJob(u.name)}};o.runJob(u);let c="";const{baseURL:l,getFetcher:f,internetAccountId:d}=k;if(v!==kd.EXTERNAL&&g){const e=new URL("files",l);e.searchParams.set("type",v);const t=e.href,n=new FormData;n.append("file",g),n.append("fileName",g.name),n.append("type",v);const r=f({locationType:"UriLocation",uri:t});if(r){o.update(u.name,"Uploading file, this may take awhile");const{signal:e}=a,i=await r(t,{method:"POST",body:n,signal:e});if(!i.ok){const e=await md(i,"Error when inserting new assembly (while uploading file)");return o.abortJob(u.name,e),void h(e)}c=(await i.json())._id}}let p;if(v===kd.EXTERNAL)p=new nr.AddAssemblyFromExternalChange({typeName:"AddAssemblyFromExternalChange",assembly:(new Jn).toHexString(),assemblyName:s,externalLocation:{fa:A,fai:O,...N?{gzi:N}:{}}});else{const e={assembly:(new Jn).toHexString(),assemblyName:s,fileIds:{fa:c}};p=v===kd.GFF3&&b?new nr.AddAssemblyAndFeaturesFromFileChange({typeName:"AddAssemblyAndFeaturesFromFileChange",...e}):new nr.AddAssemblyFromFileChange({typeName:"AddAssemblyFromFileChange",...e})}o.done(u),await e.submit(p,{internetAccountId:d,updateJobsManager:!0}),x(!1),F(!1)}},M.default.createElement(c.DialogContent,{style:{display:"flex",flexDirection:"column"}},a.length>1?M.default.createElement(M.default.Fragment,null,M.default.createElement(c.DialogContentText,null,"Select account"),M.default.createElement(c.Select,{value:k.internetAccountId,onChange:function(e){x(!1);const t=a.find((t=>t.internetAccountId===e.target.value));if(!t)throw new Error(`Could not find internetAccount with ID "${e.target.value}"`);E(t)},disabled:S&&!f},o.map((e=>M.default.createElement(c.MenuItem,{key:e.id,value:e.internetAccountId},e.name))))):null,M.default.createElement(c.TextField,{margin:"dense",id:"name",label:"Assembly name",type:"TextField",fullWidth:!0,variant:"outlined",onChange:e=>{x(!1),l(e.target.value),function(e){const{assemblies:t}=n;t.find((t=>r.readConfObject(t,"displayName")===e))?(m(!1),h(`Assembly ${e} already exists.`)):(m(!0),h(""))}(e.target.value)},disabled:S&&!f}),M.default.createElement(c.FormControl,{style:{marginTop:20}},M.default.createElement(c.FormLabel,null,"Select GFF3, FASTA or EXTERNAL option"),M.default.createElement(c.RadioGroup,{"aria-labelledby":"demo-radio-buttons-group-label",defaultValue:kd.GFF3,name:"radio-buttons-group",onChange:function(e){_(e.target.value),w(e.target.value===kd.GFF3),C(""),R(""),y(null)},value:v},M.default.createElement(c.FormControlLabel,{value:kd.GFF3,control:M.default.createElement(c.Radio,null),label:"GFF3",disabled:S&&!f}),M.default.createElement(c.FormControlLabel,{value:kd.FASTA,control:M.default.createElement(c.Radio,null),label:"FASTA",disabled:S&&!f}),M.default.createElement(c.FormControlLabel,{value:kd.EXTERNAL,control:M.default.createElement(c.Radio,null),label:"External",disabled:S&&!f}))),v===kd.EXTERNAL?M.default.createElement(c.Box,{style:{marginTop:20}},M.default.createElement(c.Typography,{variant:"caption"},"Enter FASTA and FASTA index(es) URL"),M.default.createElement(c.TextField,{margin:"dense",helperText:"Can be bgz-compressed",id:"fasta",label:"FASTA",type:"TextField",fullWidth:!0,variant:"outlined",error:!L,onChange:e=>{C(e.target.value)},disabled:S&&!f,InputProps:{startAdornment:M.default.createElement(P.default,{position:"start"},M.default.createElement(vd,null))}}),M.default.createElement(c.TextField,{margin:"dense",id:"fasta-index",label:"FASTA Index",helperText:".fai or .gz.fai",type:"TextField",fullWidth:!0,variant:"outlined",error:!D,onChange:e=>{R(e.target.value)},disabled:S&&!f,InputProps:{startAdornment:M.default.createElement(P.default,{position:"start"},M.default.createElement(vd,null))}}),M.default.createElement(c.TextField,{margin:"dense",id:"fasta-gzi-index",label:"FASTA GZI Index",helperText:"Only for bgz-compressed FASTA, .gz.gzi",type:"TextField",fullWidth:!0,variant:"outlined",error:Boolean(N)&&!q,onChange:e=>{I(e.target.value)},disabled:S&&!f,InputProps:{startAdornment:M.default.createElement(P.default,{position:"start"},M.default.createElement(vd,null))}})):M.default.createElement(c.Box,{style:{marginTop:20}},M.default.createElement("input",{type:"file",onChange:function(e){if(!e.target.files)return;const t=e.target.files.item(0);if(y(t),!t)return;const n=t.name.toLowerCase();n.endsWith(".fasta")||n.endsWith(".fna")||n.endsWith(".fa")?_(kd.FASTA):(n.endsWith(".gff3")||n.endsWith(".gff"))&&_(kd.GFF3)},disabled:S&&!f}),M.default.createElement(c.FormGroup,null,M.default.createElement(c.FormControlLabel,{control:M.default.createElement(c.Checkbox,{checked:v===kd.GFF3&&b,onChange:()=>{w(!b)},disabled:v!==kd.GFF3||S&&!f}),label:"Also load features from GFF3 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e={trace:function(){},yy:{},symbols_:{error:2,JSON_PATH:3,DOLLAR:4,PATH_COMPONENTS:5,LEADING_CHILD_MEMBER_EXPRESSION:6,PATH_COMPONENT:7,MEMBER_COMPONENT:8,SUBSCRIPT_COMPONENT:9,CHILD_MEMBER_COMPONENT:10,DESCENDANT_MEMBER_COMPONENT:11,DOT:12,MEMBER_EXPRESSION:13,DOT_DOT:14,STAR:15,IDENTIFIER:16,SCRIPT_EXPRESSION:17,INTEGER:18,END:19,CHILD_SUBSCRIPT_COMPONENT:20,DESCENDANT_SUBSCRIPT_COMPONENT:21,"[":22,SUBSCRIPT:23,"]":24,SUBSCRIPT_EXPRESSION:25,SUBSCRIPT_EXPRESSION_LIST:26,SUBSCRIPT_EXPRESSION_LISTABLE:27,",":28,STRING_LITERAL:29,ARRAY_SLICE:30,FILTER_EXPRESSION:31,QQ_STRING:32,Q_STRING:33,$accept:0,$end:1},terminals_:{2:"error",4:"DOLLAR",12:"DOT",14:"DOT_DOT",15:"STAR",16:"IDENTIFIER",17:"SCRIPT_EXPRESSION",18:"INTEGER",19:"END",22:"[",24:"]",28:",",30:"ARRAY_SLICE",31:"FILTER_EXPRESSION",32:"QQ_STRING",33:"Q_STRING"},productions_:[0,[3,1],[3,2],[3,1],[3,2],[5,1],[5,2],[7,1],[7,1],[8,1],[8,1],[10,2],[6,1],[11,2],[13,1],[13,1],[13,1],[13,1],[13,1],[9,1],[9,1],[20,3],[21,4],[23,1],[23,1],[26,1],[26,3],[27,1],[27,1],[27,1],[25,1],[25,1],[25,1],[29,1],[29,1]],performAction:function(e,n,r,o,i,a,s){o.ast||(o.ast=t,t.initialize());var u=a.length-1;switch(i){case 1:return o.ast.set({expression:{type:"root",value:a[u]}}),o.ast.unshift(),o.ast.yield();case 2:return o.ast.set({expression:{type:"root",value:a[u-1]}}),o.ast.unshift(),o.ast.yield();case 3:return o.ast.unshift(),o.ast.yield();case 4:return o.ast.set({operation:"member",scope:"child",expression:{type:"identifier",value:a[u-1]}}),o.ast.unshift(),o.ast.yield();case 5:case 6:case 11:case 13:case 18:case 21:case 22:case 23:break;case 7:o.ast.set({operation:"member"}),o.ast.push();break;case 8:o.ast.set({operation:"subscript"}),o.ast.push();break;case 9:case 19:o.ast.set({scope:"child"});break;case 10:case 20:o.ast.set({scope:"descendant"});break;case 12:o.ast.set({scope:"child",operation:"member"});break;case 14:o.ast.set({expression:{type:"wildcard",value:a[u]}});break;case 15:o.ast.set({expression:{type:"identifier",value:a[u]}});break;case 16:o.ast.set({expression:{type:"script_expression",value:a[u]}});break;case 17:o.ast.set({expression:{type:"numeric_literal",value:parseInt(a[u])}});break;case 24:a[u].length>1?o.ast.set({expression:{type:"union",value:a[u]}}):this.$=a[u];break;case 25:this.$=[a[u]];break;case 26:this.$=a[u-2].concat(a[u]);break;case 27:this.$={expression:{type:"numeric_literal",value:parseInt(a[u])}},o.ast.set(this.$);break;case 28:this.$={expression:{type:"string_literal",value:a[u]}},o.ast.set(this.$);break;case 29:this.$={expression:{type:"slice",value:a[u]}},o.ast.set(this.$);break;case 30:this.$={expression:{type:"wildcard",value:a[u]}},o.ast.set(this.$);break;case 31:this.$={expression:{type:"script_expression",value:a[u]}},o.ast.set(this.$);break;case 32:this.$={expression:{type:"filter_expression",value:a[u]}},o.ast.set(this.$);break;case 33:case 34:this.$=a[u]}},table:[{3:1,4:[1,2],6:3,13:4,15:[1,5],16:[1,6],17:[1,7],18:[1,8],19:[1,9]},{1:[3]},{1:[2,1],5:10,7:11,8:12,9:13,10:14,11:15,12:[1,18],14:[1,19],20:16,21:17,22:[1,20]},{1:[2,3],5:21,7:11,8:12,9:13,10:14,11:15,12:[1,18],14:[1,19],20:16,21:17,22:[1,20]},{1:[2,12],12:[2,12],14:[2,12],22:[2,12]},{1:[2,14],12:[2,14],14:[2,14],22:[2,14]},{1:[2,15],12:[2,15],14:[2,15],22:[2,15]},{1:[2,16],12:[2,16],14:[2,16],22:[2,16]},{1:[2,17],12:[2,17],14:[2,17],22:[2,17]},{1:[2,18],12:[2,18],14:[2,18],22:[2,18]},{1:[2,2],7:22,8:12,9:13,10:14,11:15,12:[1,18],14:[1,19],20:16,21:17,22:[1,20]},{1:[2,5],12:[2,5],14:[2,5],22:[2,5]},{1:[2,7],12:[2,7],14:[2,7],22:[2,7]},{1:[2,8],12:[2,8],14:[2,8],22:[2,8]},{1:[2,9],12:[2,9],14:[2,9],22:[2,9]},{1:[2,10],12:[2,10],14:[2,10],22:[2,10]},{1:[2,19],12:[2,19],14:[2,19],22:[2,19]},{1:[2,20],12:[2,20],14:[2,20],22:[2,20]},{13:23,15:[1,5],16:[1,6],17:[1,7],18:[1,8],19:[1,9]},{13:24,15:[1,5],16:[1,6],17:[1,7],18:[1,8],19:[1,9],22:[1,25]},{15:[1,29],17:[1,30],18:[1,33],23:26,25:27,26:28,27:32,29:34,30:[1,35],31:[1,31],32:[1,36],33:[1,37]},{1:[2,4],7:22,8:12,9:13,10:14,11:15,12:[1,18],14:[1,19],20:16,21:17,22:[1,20]},{1:[2,6],12:[2,6],14:[2,6],22:[2,6]},{1:[2,11],12:[2,11],14:[2,11],22:[2,11]},{1:[2,13],12:[2,13],14:[2,13],22:[2,13]},{15:[1,29],17:[1,30],18:[1,33],23:38,25:27,26:28,27:32,29:34,30:[1,35],31:[1,31],32:[1,36],33:[1,37]},{24:[1,39]},{24:[2,23]},{24:[2,24],28:[1,40]},{24:[2,30]},{24:[2,31]},{24:[2,32]},{24:[2,25],28:[2,25]},{24:[2,27],28:[2,27]},{24:[2,28],28:[2,28]},{24:[2,29],28:[2,29]},{24:[2,33],28:[2,33]},{24:[2,34],28:[2,34]},{24:[1,41]},{1:[2,21],12:[2,21],14:[2,21],22:[2,21]},{18:[1,33],27:42,29:34,30:[1,35],32:[1,36],33:[1,37]},{1:[2,22],12:[2,22],14:[2,22],22:[2,22]},{24:[2,26],28:[2,26]}],defaultActions:{27:[2,23],29:[2,30],30:[2,31],31:[2,32]},parseError:function(e,t){if(!t.recoverable)throw new Error(e);this.trace(e)},parse:function(e){var t=[0],n=[null],r=[],o=this.table,i="",a=0,s=0,u=r.slice.call(arguments,1);this.lexer.setInput(e),this.lexer.yy=this.yy,this.yy.lexer=this.lexer,this.yy.parser=this,void 0===this.lexer.yylloc&&(this.lexer.yylloc={});var c=this.lexer.yylloc;r.push(c);var l=this.lexer.options&&this.lexer.options.ranges;this.parseError="function"==typeof this.yy.parseError?this.yy.parseError:Object.getPrototypeOf(this).parseError;for(var f,d,h,p,m,g,y,v,_={};;){if(this.defaultActions[d=t[t.length-1]]?h=this.defaultActions[d]:(null==f&&(v=void 0,"number"!=typeof(v=this.lexer.lex()||1)&&(v=this.symbols_[v]||v),f=v),h=o[d]&&o[d][f]),void 0===h||!h.length||!h[0]){var b;for(m in y=[],o[d])this.terminals_[m]&&m>2&&y.push("'"+this.terminals_[m]+"'");b=this.lexer.showPosition?"Parse error on line "+(a+1)+":\n"+this.lexer.showPosition()+"\nExpecting "+y.join(", ")+", got '"+(this.terminals_[f]||f)+"'":"Parse error on line "+(a+1)+": Unexpected "+(1==f?"end of 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p;g&&(t=t.slice(0,-1*g*2),n=n.slice(0,-1*g),r=r.slice(0,-1*g)),t.push(this.productions_[h[1]][0]),n.push(_.$),r.push(_._$),t.push(o[t[t.length-2]][t[t.length-1]]);break;case 3:return!0}}return!0}},t={initialize:function(){this._nodes=[],this._node={},this._stash=[]},set:function(e){for(var t in e)this._node[t]=e[t];return this._node},node:function(e){return arguments.length&&(this._node=e),this._node},push:function(){this._nodes.push(this._node),this._node={}},unshift:function(){this._nodes.unshift(this._node),this._node={}},yield:function(){var e=this._nodes;return this.initialize(),e}},n=function(){var e={EOF:1,parseError:function(e,t){if(!this.yy.parser)throw new Error(e);this.yy.parser.parseError(e,t)},setInput:function(e){return this._input=e,this._more=this._backtrack=this.done=!1,this.yylineno=this.yyleng=0,this.yytext=this.matched=this.match="",this.conditionStack=["INITIAL"],this.yylloc={first_line:1,first_column:0,last_line:1,last_column:0},this.options.ranges&&(this.yylloc.range=[0,0]),this.offset=0,this},input:function(){var e=this._input[0];return this.yytext+=e,this.yyleng++,this.offset++,this.match+=e,this.matched+=e,e.match(/(?:\r\n?|\n).*/g)?(this.yylineno++,this.yylloc.last_line++):this.yylloc.last_column++,this.options.ranges&&this.yylloc.range[1]++,this._input=this._input.slice(1),e},unput:function(e){var t=e.length,n=e.split(/(?:\r\n?|\n)/g);this._input=e+this._input,this.yytext=this.yytext.substr(0,this.yytext.length-t-1),this.offset-=t;var r=this.match.split(/(?:\r\n?|\n)/g);this.match=this.match.substr(0,this.match.length-1),this.matched=this.matched.substr(0,this.matched.length-1),n.length-1&&(this.yylineno-=n.length-1);var o=this.yylloc.range;return this.yylloc={first_line:this.yylloc.first_line,last_line:this.yylineno+1,first_column:this.yylloc.first_column,last_column:n?(n.length===r.length?this.yylloc.first_column:0)+r[r.length-n.length].length-n[0].length:this.yylloc.first_column-t},this.options.ranges&&(this.yylloc.range=[o[0],o[0]+this.yyleng-t]),this.yyleng=this.yytext.length,this},more:function(){return this._more=!0,this},reject:function(){return this.options.backtrack_lexer?(this._backtrack=!0,this):this.parseError("Lexical error on line "+(this.yylineno+1)+". You can only invoke reject() in the lexer when the lexer is of the backtracking persuasion (options.backtrack_lexer = true).\n"+this.showPosition(),{text:"",token:null,line:this.yylineno})},less:function(e){this.unput(this.match.slice(e))},pastInput:function(){var e=this.matched.substr(0,this.matched.length-this.match.length);return(e.length>20?"...":"")+e.substr(-20).replace(/\n/g,"")},upcomingInput:function(){var e=this.match;return e.length<20&&(e+=this._input.substr(0,20-e.length)),(e.substr(0,20)+(e.length>20?"...":"")).replace(/\n/g,"")},showPosition:function(){var e=this.pastInput(),t=new Array(e.length+1).join("-");return e+this.upcomingInput()+"\n"+t+"^"},test_match:function(e,t){var n,r,o;if(this.options.backtrack_lexer&&(o={yylineno:this.yylineno,yylloc:{first_line:this.yylloc.first_line,last_line:this.last_line,first_column:this.yylloc.first_column,last_column:this.yylloc.last_column},yytext:this.yytext,match:this.match,matches:this.matches,matched:this.matched,yyleng:this.yyleng,offset:this.offset,_more:this._more,_input:this._input,yy:this.yy,conditionStack:this.conditionStack.slice(0),done:this.done},this.options.ranges&&(o.yylloc.range=this.yylloc.range.slice(0))),(r=e[0].match(/(?:\r\n?|\n).*/g))&&(this.yylineno+=r.length),this.yylloc={first_line:this.yylloc.last_line,last_line:this.yylineno+1,first_column:this.yylloc.last_column,last_column:r?r[r.length-1].length-r[r.length-1].match(/\r?\n?/)[0].length:this.yylloc.last_column+e[0].length},this.yytext+=e[0],this.match+=e[0],this.matches=e,this.yyleng=this.yytext.length,this.options.ranges&&(this.yylloc.range=[this.offset,this.offset+=this.yyleng]),this._more=!1,this._backtrack=!1,this._input=this._input.slice(e[0].length),this.matched+=e[0],n=this.performAction.call(this,this.yy,this,t,this.conditionStack[this.conditionStack.length-1]),this.done&&this._input&&(this.done=!1),n)return n;if(this._backtrack){for(var i in o)this[i]=o[i];return!1}return!1},next:function(){if(this.done)return this.EOF;var e,t,n,r;this._input||(this.done=!0),this._more||(this.yytext="",this.match="");for(var o=this._currentRules(),i=0;i<o.length;i++)if((n=this._input.match(this.rules[o[i]]))&&(!t||n[0].length>t[0].length)){if(t=n,r=i,this.options.backtrack_lexer){if(!1!==(e=this.test_match(n,o[i])))return e;if(this._backtrack){t=!1;continue}return!1}if(!this.options.flex)break}return t?!1!==(e=this.test_match(t,o[r]))&&e:""===this._input?this.EOF:this.parseError("Lexical error on line "+(this.yylineno+1)+". Unrecognized text.\n"+this.showPosition(),{text:"",token:null,line:this.yylineno})},lex:function(){return this.next()||this.lex()},begin:function(e){this.conditionStack.push(e)},popState:function(){return this.conditionStack.length-1>0?this.conditionStack.pop():this.conditionStack[0]},_currentRules:function(){return this.conditionStack.length&&this.conditionStack[this.conditionStack.length-1]?this.conditions[this.conditionStack[this.conditionStack.length-1]].rules:this.conditions.INITIAL.rules},topState:function(e){return(e=this.conditionStack.length-1-Math.abs(e||0))>=0?this.conditionStack[e]:"INITIAL"},pushState:function(e){this.begin(e)},stateStackSize:function(){return this.conditionStack.length},options:{},performAction:function(e,t,n,r){switch(n){case 0:return 4;case 1:return 14;case 2:return 12;case 3:return 15;case 4:return 16;case 5:return 22;case 6:return 24;case 7:return 28;case 8:return 30;case 9:return 18;case 10:return t.yytext=t.yytext.substr(1,t.yyleng-2),32;case 11:return t.yytext=t.yytext.substr(1,t.yyleng-2),33;case 12:return 17;case 13:return 31}},rules:[/^(?:\$)/,/^(?:\.\.)/,/^(?:\.)/,/^(?:\*)/,/^(?:[a-zA-Z_]+[a-zA-Z0-9_]*)/,/^(?:\[)/,/^(?:\])/,/^(?:,)/,/^(?:((-?(?:0|[1-9][0-9]*)))?\:((-?(?:0|[1-9][0-9]*)))?(\:((-?(?:0|[1-9][0-9]*)))?)?)/,/^(?:(-?(?:0|[1-9][0-9]*)))/,/^(?:"(?:\\["bfnrt/\\]|\\u[a-fA-F0-9]{4}|[^"\\])*")/,/^(?:'(?:\\['bfnrt/\\]|\\u[a-fA-F0-9]{4}|[^'\\])*')/,/^(?:\(.+?\)(?=\]))/,/^(?:\?\(.+?\)(?=\]))/],conditions:{INITIAL:{rules:[0,1,2,3,4,5,6,7,8,9,10,11,12,13],inclusive:!0}}};return e}();function r(){this.yy={}}return e.lexer=n,r.prototype=e,e.Parser=r,new r}();void 0!==e&&void 0!==n&&(n.parser=o,n.Parser=o.Parser,n.parse=function(){return o.parse.apply(o,arguments)},n.main=function(t){t[1]||(console.log("Usage: "+t[0]+" FILE"),r.exit(1));var o=e("fs").readFileSync(e("path").normalize(t[1]),"utf8");return n.parser.parse(o)},void 0!==t&&e.main===t&&n.main(r.argv.slice(1)))}).call(this,e("_process"))},{_process:14,fs:12,path:13}],2:[function(e,t,n){t.exports={identifier:"[a-zA-Z_]+[a-zA-Z0-9_]*",integer:"-?(?:0|[1-9][0-9]*)",qq_string:'"(?:\\\\["bfnrt/\\\\]|\\\\u[a-fA-F0-9]{4}|[^"\\\\])*"',q_string:"'(?:\\\\['bfnrt/\\\\]|\\\\u[a-fA-F0-9]{4}|[^'\\\\])*'"}},{}],3:[function(e,t,n){var r=e("./dict"),o=e("fs"),i={lex:{macros:{esc:"\\\\",int:r.integer},rules:[["\\$","return 'DOLLAR'"],["\\.\\.","return 'DOT_DOT'"],["\\.","return 'DOT'"],["\\*","return 'STAR'"],[r.identifier,"return 'IDENTIFIER'"],["\\[","return '['"],["\\]","return ']'"],[",","return ','"],["({int})?\\:({int})?(\\:({int})?)?","return 'ARRAY_SLICE'"],["{int}","return 'INTEGER'"],[r.qq_string,"yytext = yytext.substr(1,yyleng-2); return 'QQ_STRING';"],[r.q_string,"yytext = yytext.substr(1,yyleng-2); return 'Q_STRING';"],["\\(.+?\\)(?=\\])","return 'SCRIPT_EXPRESSION'"],["\\?\\(.+?\\)(?=\\])","return 'FILTER_EXPRESSION'"]]},start:"JSON_PATH",bnf:{JSON_PATH:[["DOLLAR",'yy.ast.set({ expression: { type: "root", value: $1 } }); yy.ast.unshift(); return yy.ast.yield()'],["DOLLAR PATH_COMPONENTS",'yy.ast.set({ expression: { type: "root", value: $1 } }); yy.ast.unshift(); return yy.ast.yield()'],["LEADING_CHILD_MEMBER_EXPRESSION","yy.ast.unshift(); return yy.ast.yield()"],["LEADING_CHILD_MEMBER_EXPRESSION PATH_COMPONENTS",'yy.ast.set({ operation: "member", scope: "child", expression: { type: "identifier", value: $1 }}); yy.ast.unshift(); return yy.ast.yield()']],PATH_COMPONENTS:[["PATH_COMPONENT",""],["PATH_COMPONENTS PATH_COMPONENT",""]],PATH_COMPONENT:[["MEMBER_COMPONENT",'yy.ast.set({ operation: "member" }); yy.ast.push()'],["SUBSCRIPT_COMPONENT",'yy.ast.set({ operation: "subscript" }); yy.ast.push() ']],MEMBER_COMPONENT:[["CHILD_MEMBER_COMPONENT",'yy.ast.set({ scope: "child" })'],["DESCENDANT_MEMBER_COMPONENT",'yy.ast.set({ scope: "descendant" })']],CHILD_MEMBER_COMPONENT:[["DOT 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wR{ontologyName;ontologyVersion;sourceLocation;db;options;loadOboGraphJson=vR;getTermsByFulltext=lR;openDatabase=gR;isDatabaseCurrent=bR;get textIndexFields(){return _R.call(this)}get prefixes(){return this.options.prefixes??new Map}DEFAULT_MAX_SEARCH_RESULTS=100;constructor(e,t,n,r){this.ontologyName=e,this.ontologyVersion=t,this.sourceLocation=n,this.db=this.prepareDatabase(),this.options=r??{}}validate(){const e=[],{sourceLocation:t,sourceType:n}=this;return n?"obo-graph-json"!==n&&e.push(new Error(`ontology source file ${JSON.stringify(t)} has type ${n}, which is not yet supported`)):e.push(new Error(`unable to determine format of ontology source file ${JSON.stringify(t)}, file name must end with ".json", ".obo", or ".owl"`)),e}get sourceType(){if(n.isUriLocation(this.sourceLocation)){if(this.sourceLocation.uri.endsWith(".json"))return"obo-graph-json"}else if(n.isLocalPathLocation(this.sourceLocation)&&this.sourceLocation.localPath.endsWith(".json"))return"obo-graph-json"}get dbName(){return`Apollo Ontology "${this.ontologyName}" "${this.ontologyVersion}"`}async prepareDatabase(){const e=this.validate();if(e.length>0)throw e;const t=await this.openDatabase(this.dbName);if(await this.isDatabaseCurrent(t))return t;try{const{sourceLocation:e,sourceType:n}=this;if("obo-graph-json"!==n)throw new Error(`ontology source file ${JSON.stringify(e)} has type ${n}, which is not yet supported`);return await this.loadOboGraphJson(t),t}catch(e){throw t.close(),await function(e){var t=(arguments.length>1&&void 0!==arguments[1]?arguments[1]:{}).blocked,n=indexedDB.deleteDatabase(e);return t&&n.addEventListener("blocked",(function(e){return t(e.oldVersion,e)})),Fd(n).then((function(){}))}(this.dbName),e}}async termCount(e){const t=await this.db;return(e??t.transaction("nodes")).objectStore("nodes").count()}unique(e){const t=new Map,n=[];for(const r of e)t.has(r.id)||(t.set(r.id,!0),n.push(r));return n}async getTermsWithLabelOrSynonym(e,t,n){const r=t?.includeSubclasses??!0,o=await this.db,i=n??o.transaction(["nodes","edges"]),a=i.objectStore("nodes"),s=[...await a.index("by-label").getAll(e),...await a.index("by-synonym").getAll(e)];if(r){const e=await this.recurseEdges("by-object",s.map((e=>e.id)),(e=>"is_a"===e.pred),"sub",i);for(const t of e){const e=await a.get(t);e&&s.push(e)}}return s}async getPropertiesByLabel(e,t,n){const r=t?.includeSubProperties??!0,o=await this.db,i=n??o.transaction(["nodes","edges"]),a=(await this.getTermsWithLabelOrSynonym(e,{includeSubclasses:!1},i)).filter((e=>CR(e)));if(r){const e=await this.recurseEdges("by-object",a.map((e=>e.id)),(e=>"subPropertyOf"===e.pred),"sub",i),t=i.objectStore("nodes");for(const n of e){const e=await t.get(n);e&&CR(e)&&a.push(e)}}return a}async recurseEdges(e,t,n,r,o){const i=new Set;return await async function t(a){await Promise.all([...a].map((async a=>{const s=(await o.objectStore("edges").index(e).getAll(a)).filter((e=>n(e))).map((e=>e[r]));if(s.length>0){for(const e of s)i.add(e);await t(s)}})))}(t),i.values()}async*expandNodeSet(e,t="is_a",n,r){const o=await this.db,i=r??o.transaction(["edges"]),a=[...e],s=await this.recurseEdges("subclasses"===n?"by-object":"by-subject",a,(e=>e.pred===t),"subclasses"===n?"sub":"obj",i);for(const e of a)yield e;for(const e of s)yield e}expandSubclasses(e,t="is_a",n){return this.expandNodeSet(e,t,"subclasses",n)}expandSuperclasses(e,t="is_a",n){return this.expandNodeSet(e,t,"superclasses",n)}async getClassesThat(e,t,n){const r=await this.db,o=n??r.transaction(["nodes","edges"]),i=await this.getPropertiesByLabel(e,{includeSubProperties:!0},o),a=new Set(i.map((e=>e.id))),s=await async function(e){const t=[];for await(const n of e)t.push(n);return t}(this.expandSuperclasses(t.map((e=>e.id)),"is_a",o)),u=await this.recurseEdges("by-object",s,(e=>a.has(e.pred)),"sub",o),c=this.expandSubclasses(u,"is_a",o),l=[];for await(const e of c){const t=await o.objectStore("nodes").get(e);t&&AR(t)&&!pR(t)&&l.push(t)}return 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function(n){n.preventDefault(),m("");const s=new nr.AddFeatureChange({changedIds:[o._id],typeName:"AddFeatureChange",assembly:r,addedFeature:{_id:(new Jn).toHexString(),refSeq:o.refSeq,min:Number(u)-1,max:Number(a),type:f},parentFeatureId:o._id});await e.submit(s),i("Feature added successfully","success"),t(),n.preventDefault()}},M.default.createElement(c.DialogContent,{style:{display:"flex",flexDirection:"column"}},M.default.createElement(c.TextField,{margin:"dense",id:"start",label:"Start",type:"number",fullWidth:!0,variant:"outlined",value:u,onChange:e=>{l(e.target.value)}}),M.default.createElement(c.TextField,{margin:"dense",id:"end",label:"End",type:"number",fullWidth:!0,variant:"outlined",value:a,onChange:e=>{s(e.target.value)},error:v,helperText:v?'"End" must be greater than "Start"':null}),M.default.createElement(RR,{session:n,ontologyName:"Sequence Ontology",style:{width:170},value:f,filterTerms:AR,fetchValidTerms:async function(e,t,n){const r=await OR(e,t);if(r)return 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s=[{directive:"gff-version",value:"3"}],c=r.getConf(n,["sequence","adapter","features"]);for(const e of c){const{end:t,refName:n,start:r}=e;s.push({directive:"sequence-region",value:`${n} ${r+1} ${t}`})}for(const[,e]of i){const{features:t}=e;if(t)for(const[,e]of t)s.push(nr.annotationFeatureToGFF3(u.getSnapshot(e)))}for(const e of c){const{refName:t,seq:n}=e;s.push({id:t,description:"",sequence:n})}const l=dd.formatSync(s),f=new Blob([l],{type:"text/plain;charset=utf-8"});FR.exports.saveAs(f,`${n.displayName??n.name}.gff3`)}(t),e()}},M.default.createElement(c.DialogContent,{style:{display:"flex",flexDirection:"column"}},M.default.createElement(c.DialogContentText,null,"Select assembly"),M.default.createElement(c.Select,{labelId:"label",value:n?.name??"",onChange:function(e){const t=h.find((t=>t.name===e.target.value));o(t)},disabled:0===h.length},h.map((e=>M.default.createElement(c.MenuItem,{key:e.name,value:e.name},e.displayName??e.name)))),M.default.createElement(c.DialogContentText,null,"Select assembly to export to GFF3")),M.default.createElement(c.DialogActions,null,M.default.createElement(c.Button,{disabled:!n,variant:"contained",type:"submit"},"Download"),M.default.createElement(c.Button,{variant:"outlined",type:"submit",onClick:e},"Cancel"))),i?M.default.createElement(c.DialogContent,null,M.default.createElement(c.DialogContentText,{color:"error"},i)):null)}function DR({changeManager:e,handleClose:t,session:n}){const{apolloDataStore:o}=n,[i,a]=d.useState(),[s,u]=d.useState(),[l,f]=d.useState(""),[h,p]=d.useState(!1),[m,g]=d.useState(),[y,v]=d.useState(!1),[_,b]=d.useState(!1),{collaborationServerDriver:w,getInternetAccount:S}=o,x=w.getAssemblies();return d.useEffect((()=>{s&&(async()=>{const{internetAccountConfigId:e}=r.getConf(s,["sequence","metadata"]),t=S(s.name,e);if(!t)throw new Error("No Apollo internet account found");const{baseURL:n}=t,o=new URL("features/count",n),i=new URLSearchParams({assemblyId:s.name});o.search=i.toString();const a=t.getFetcher({locationType:"UriLocation",uri:o.toString()});b(!0);const u=await a(o.toString(),{method:"GET"});if(!u.ok)throw new Error(await md(u));{const e=await u.json();g(e.count)}b(!1)})().catch((e=>{console.error(e),f(e.message??e)}))}),[S,n,s]),M.default.createElement(xd,{open:!0,title:"Import Features from GFF3 file",handleClose:t,maxWidth:!1,"data-testid":"import-features-dialog"},_?M.default.createElement(T.default,null):null,M.default.createElement("form",{onSubmit:async function(o){o.preventDefault(),f(""),b(!0),p(!0);let a="";if(!i)return void f("must select a file");if(!s)return void f("Must select assembly to 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e({id:t.uniqueId||"".concat(o,"-").concat(n),data:K({strand:r.data.strand},t),parent:r}):t})))}return ne(e,[{key:"get",value:function(e){return"subfeatures"===e?this.subfeatures:"parent"===e?this.parent():this.data[e]}},{key:"set",value:function(e,t){this.data[e]=t}},{key:"tags",value:function(){return Object.keys(this.data)}},{key:"id",value:function(){return this.uniqueId}},{key:"parent",value:function(){return this.parentHandle}},{key:"children",value:function(){return this.get("subfeatures")}},{key:"toJSON",value:function(){var e=K(K({},this.data),{},{uniqueId:this.id()}),t=this.parent();t&&(e.parentId=t.id());var n=this.children();return n&&(e.subfeatures=n.map((function(e){return e.toJSON()}))),e}}],[{key:"fromJSON",value:function(t){return new e(K({},t))}}]),e}(),ON=EN.default=CN;function RN(e){return"object"==typeof e&&null!==e&&"apollo"in e&&!0===e.apollo}const NN="undefined"==typeof sessionStorage;class IN extends S.BaseSequenceAdapter{regions;async getRefNames(e){return(await this.getRegions(e)).map((e=>e.refName))}async getRegions(e){if(this.regions)return this.regions;const t=r.readConfObject(this.config,"assemblyId");if(!NN){const e=this.pluginManager?.rootModel?.session?.apolloDataStore;if(!e)throw new Error("No Apollo data store found");const n=e.getBackendDriver(t),r=await n.getRegions(t);return this.regions=r,r}const n=await new Promise(((n,r)=>{const o=setTimeout((()=>{r("timeout")}),2e4),i=oN(),a=e=>{const{data:t}=e;RN(t)&&t.messageId===i&&(clearTimeout(o),removeEventListener("message",a),n(t.regions))};addEventListener("message",a,e),globalThis.rpcServer.emit("apollo",{apollo:!0,method:"getRegions",assembly:t,messageId:i})}));return this.regions=n,n}getFeatures(e,t){const{end:n,refName:o,start:i}=e,a=r.readConfObject(this.config,"assemblyId"),s={...e,assemblyName:a};return x.ObservableCreate((async e=>{if(!NN){const t=this.pluginManager?.rootModel?.session?.apolloDataStore;if(!t)return void e.error("No Apollo data store 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MN=p.observer((function(e){const[t,o]=d.useState(),[i,a]=d.useState(),l=d.useRef(null),f=d.useRef(null),h=d.useRef(null),[p,m]=d.useState(!1),[g,y]=d.useState(!0),[v,_]=d.useState(),[b,w]=d.useState(!1),[S,x]=d.useState([]),{bpPerPx:k,displayModel:E,regions:A}=e,{session:C}=E,{collaborators:O}=C;d.useEffect((()=>s.autorun((()=>{x(s.toJS(O))}))),[]);const[R]=A,N=(R.end-R.start)/k,{apolloFeatureUnderMouse:I,apolloRowHeight:P,apolloRowUnderMouse:T,changeManager:j,codonLayout:F,featureLayout:L,features:D,featuresHeight:q,getAssemblyId:B,selectedFeature:U,setApolloFeatureUnderMouse:z,setApolloRowUnderMouse:G,setSelectedFeature:H,showIntronLines:W,showStartCodons:V,showStopCodons:$}=E,J=[...D.values()].map((e=>[...e.values()].map((e=>u.getSnapshot(e))))),K=d.useMemo((()=>{const{internetAccounts:e}=u.getRoot(C),{assemblyName:t}=R,{assemblyManager:o}=n.getSession(E),i=o.get(t);if(!i)throw new Error(`No assembly found with name 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n=[(r[0]-i[0])/2+i[0],Math.max(1,Math.min(i[1],r[1])-P/2+2*e)];t.beginPath(),t.moveTo(i[0],i[1]+2*e),t.lineTo(...n),t.stroke(),t.moveTo(...n),t.lineTo(r[0],r[1]+2*e),t.stroke()}i=r}e+=1}}}),[W,R,k,R.start,R.end,R.reversed,N,L,q,D,P,J]),d.useEffect((()=>{const e=h.current;if(!e)return;const t=e.getContext("2d");if(t){t.clearRect(0,0,N,q);for(const[e,{starts:n,stops:r}]of F){const o=k;for(const r of n){const n=r/o;R.start/o<=n&&n<=R.end/o&&(t.fillStyle="rgba(255,0,255,1)",V?t.fillRect(Math.round(n-.5-R.start/o),e*P,1,P):t.clearRect(Math.round(n-.5-R.start/o),e*P,1,P))}for(const n of r){const r=n/o;R.start/o<=r&&r<=R.end/o&&(t.fillStyle="black",$?t.fillRect(Math.round(r-.5-R.start/o),e*P,1,P):t.clearRect(Math.round(r-.5-R.start/o),e*P,1,P))}}}}),[V,$,F,N,q,k,P,R,R.start,R.end]),d.useEffect((()=>{const e=f.current;if(!e)return;const t=e.getContext("2d");if(t){t.clearRect(0,0,N,q);for(const e of S){const{locations:n}=e;if(0===n.length)return;for(const r of n){const{end:n,start:o}=r,i=(R.reversed?R.end-o:o-R.start)/k,a=(n-o)/k;t.fillStyle="rgba(0,255,0,.2)",t.fillRect(i,1,a,100),t.fillStyle="black",t.fillText(e.name,i+1,11,a-2)}}}}),[I,T,k,q,N,R,R.start,R.end,R.reversed,v,P,S]),M.default.createElement("div",{style:{position:"relative",width:N,height:q}},M.default.createElement(c.Menu,{open:Boolean(i),anchorReference:"anchorPosition",anchorPosition:t?{left:t[0],top:t[1]}:void 0,"data-testid":"base_linear_display_context_menu",onClose:()=>{a(void 0)}},M.default.createElement(c.MenuItem,{disabled:g,key:1,value:1,onClick:()=>{if(!i)return;const e=B(R.assemblyName);C.queueDialog((t=>[NR,{session:C,handleClose:()=>{t(),a(void 0)},changeManager:j,sourceFeature:i,sourceAssemblyId:e,internetAccount:K}]))}},"Add child feature"),M.default.createElement(c.MenuItem,{disabled:g,key:2,value:2,onClick:()=>{if(!i)return;const e=B(R.assemblyName);C.queueDialog((t=>[TR,{session:C,handleClose:()=>{t(),a(void 0)},changeManager:j,sourceFeature:i,sourceAssemblyId:e}]))}},"Copy features and annotations"),M.default.createElement(c.MenuItem,{disabled:!p,key:3,value:3,onClick:()=>{if(!i)return;const e=B(R.assemblyName);C.queueDialog((t=>[jR,{session:C,handleClose:()=>{t(),a(void 0)},changeManager:j,sourceFeature:i,sourceAssemblyId:e,selectedFeature:U,setSelectedFeature:H}]))}},"Delete feature")),M.default.createElement("canvas",{ref:l,width:N,height:q,style:{position:"absolute",left:0,top:0}}),M.default.createElement("canvas",{ref:f,width:N,height:q,onMouseLeave:function(){z(),G()},onMouseUp:async function(){if(b){if(v){const e=B(R.assemblyName),{bp:t,edge:n,feature:r}=v;let o;if("end"===n){const n=r._id,i=r.max,a=Math.round(t);o=new nr.LocationEndChange({typeName:"LocationEndChange",changedIds:[n],featureId:n,oldEnd:i,newEnd:a,assembly:e})}else{const n=r._id,i=r.min,a=Math.round(t);o=new nr.LocationStartChange({typeName:"LocationStartChange",changedIds:[n],featureId:n,oldStart:i,newStart:a,assembly:e})}await j.submit(o)}}else I&&H(I);_(void 0),w(!1)},onContextMenu:function(e){e.preventDefault(),a(I),o([e.pageX,e.pageY])},style:{position:"absolute",left:0,top:0}}),M.default.createElement("canvas",{ref:h,width:N,height:6*P,style:{position:"absolute",left:0,top:0}}))})),jN=r.ConfigurationSchema("ApolloSixFrameRenderer",{},{explicitlyTyped:!0});class FN extends o.RendererType{async renderInClient(e,t){return this.render(t)}async freeResourcesInClient(e,t){return 0}}var LN={};Object.defineProperty(LN,"__esModule",{value:!0}),LN.RefSequenceResult=void 0;var DN=function(){function e(t){ee(this,e),this.label=t.label,this.locString=t.locString,this.renderingComponent=t.renderingComponent,this.displayString=t.displayString,this.matchedAttribute=t.matchedAttribute,this.matchedObject=t.matchedObject,this.textSearchAdapter=t.textSearchAdapter,this.relevance=t.relevance,this.trackId=t.trackId,this.score=t.score||1,this.results=t.results||[]}return ne(e,[{key:"getLabel",value:function(){return this.label}},{key:"getDisplayString",value:function(){return this.displayString||this.label}},{key:"getRenderingComponent",value:function(){return this.renderingComponent}},{key:"getTrackId",value:function(){return this.trackId}},{key:"getScore",value:function(){return this.score}},{key:"updateScore",value:function(e){return this.score=e,this.score}},{key:"getId",value:function(){return"".concat(this.getLabel(),"-").concat(this.getLocation(),"-").concat(this.getTrackId())}},{key:"hasLocation",value:function(){return!!this.locString}},{key:"getLocation",value:function(){return this.locString}},{key:"getComboResults",value:function(){return this.results}}]),e}(),qN=LN.default=DN,BN=function(e){oe(n,e);var t=fe(n);function n(e){var r,o;return ee(this,n),(r=t.call(this,e)).refName=null!==(o=e.refName)&&void 0!==o?o:"",r}return ne(n,[{key:"getLocation",value:function(){return this.refName}}]),n}(DN);LN.RefSequenceResult=BN;class UN extends S.BaseAdapter{get baseURL(){return r.readConfObject(this.config,"baseURL").uri}get trackId(){return r.readConfObject(this.config,"trackId")}get assemblyNames(){return r.readConfObject(this.config,"assemblyNames")}mapBaseResult(e,t,n){return e.map((e=>{const r=t.getCanonicalRefName(e.refSeq);return new qN({label:n,trackId:this.trackId,locString:`${r}:${e.min+1}..${e.max}`})}))}async searchIndex(e){const t=e.queryString,n=[],r=this.pluginManager?.rootModel?.session;if(!r)return n;const{apolloDataStore:o}=r,{assemblyManager:i}=r;for(const r of this.assemblyNames){const a=o.getBackendDriver(r),s=i.get(r);if(!a||!s)continue;const u=await a.searchFeatures(e.queryString,[r]);n.push(...this.mapBaseResult(u,s,t))}return n}freeResources(){}}var zN=r.ConfigurationSchema("ApolloTextSearchAdapter",{assemblyNames:{type:"stringArray",defaultValue:[],description:"List of assemblies covered by text search adapter"},trackId:{type:"string",defaultValue:""},baseURL:{type:"fileLocation",defaultValue:{uri:"",locationType:"UriLocation"}}},{explicitlyTyped:!0,explicitIdentifier:"textSearchAdapterId"});const GN=r.ConfigurationSchema("ApolloPlugin",{ontologies:u.types.array(ER),featureTypeOntologyName:{description:"Name of the feature type ontology",type:"string",defaultValue:"Sequence Ontology"}});function HN(e){if("LinearPileupDisplay"!==e.name)return e;const{stateModel:t}=e,r=t.views((e=>({getFirstRegion:()=>n.getContainingView(e).dynamicBlocks.contentBlocks[0],getAssembly(){const t=e.getFirstRegion(),r=n.getSession(e),{assemblyManager:o}=r,{assemblyName:i}=t,a=o.get(i);if(!a)throw new Error(`Could not find assembly named ${i}`);return a},getRefSeqId(t){const n=e.getFirstRegion(),{refName:r}=n,{refNameAliases:o}=t;if(!o)throw new Error(`Could not find aliases for ${t.name}`);const i=[...Object.entries(o)].filter((([e,t])=>e!==t)).map((([e,t])=>({_id:e,name:t??""}))),a=i.find((e=>e.name===r))?._id;if(!a)throw new Error(`Could not find refSeqId named ${r}`);return a},createFeature(){const t=e.contextMenuFeature,n=e.getAssembly(),r=e.getRefSeqId(n),o=(t.get("CIGAR").toUpperCase().match(/\d+\D/g)??[]).map((e=>[(/\D/.exec(e)??[])[0],Number.parseInt(e,10)]));let i=0;const a=t.get("start");let s;const u=[];for(const[e,t]of o)"M"===e||"="===e?void 0===s&&(s=i+a):"N"===e&&void 0!==s&&(u.push({start:s,end:i+s}),s=void 0),"I"!==e&&(i+=t);void 0!==s&&u.push({start:s,end:i+a});const c={_id:Jn().toHexString(),refSeq:r,min:t.get("start"),max:t.get("end"),type:"mRNA",strand:t.get("strand")};if(0===u.length)return c;c.children={};const[l]=u,f={_id:Jn().toHexString(),refSeq:r,min:l.start,max:l.end,type:"CDS",strand:t.get("strand")};if(c.children[f._id]=f,1===u.length){const e={_id:Jn().toHexString(),refSeq:r,min:l.start,max:l.end,type:"exon",strand:t.get("strand")};return c.children[e._id]=e,c}for(const e of u){f.min=Math.min(f.min,e.start),f.max=Math.max(f.max,e.end);const{end:n,start:o}=e,i={_id:Jn().toHexString(),refSeq:r,min:o,max:n,type:"exon",strand:t.get("strand")};c.children[i._id]=i}return c},async onPileupFeatureContext(){const t=e.createFeature(),r=e.getAssembly(),o=new nr.AddFeatureChange({changedIds:[t._id],typeName:"AddFeatureChange",assembly:r.name,addedFeature:t}),i=n.getSession(e);await i.apolloDataStore.changeManager.submit(o),i.notify("Annotation added successfully","success")}}))).views((e=>{const t=e.contextMenuItems;return{contextMenuItems:()=>e.contextMenuFeature?[...t(),{label:"Create Apollo annotation",icon:Zu,onClick:e.onPileupFeatureContext}]:t()}}));return e.stateModel=r,e}const WN=p.observer((function({onChangeCommitted:e,value:t,...n}){const[r,o]=d.useState(String(t)),[i,a]=d.useState(!1),[s,u]=d.useState(null);return d.useEffect((()=>{o(String(t))}),[t]),d.useEffect((()=>{i&&(s?.blur(),a(!1))}),[i,s]),M.default.createElement(c.TextField,{...n,type:"text",onChange:function(e){o(e.target.value)},value:r,onKeyDown:e=>{"Enter"===e.key?s?.blur():"Escape"===e.key&&(o(String(t)),a(!0))},onBlur:()=>{r!==String(t)&&e(r)},inputRef:e=>{u(e)}})})),VN=new Map([["Gene Ontology",e=>M.default.createElement(YR,{...e,ontologyName:"Gene Ontology"})],["Sequence Ontology",e=>M.default.createElement(YR,{...e,ontologyName:"Sequence Ontology"})]]),$N=["ID","Name","Alias","Target","Gap","Derives_from","Note","Dbxref","Ontology","Is_Circular"],JN=m.makeStyles()((e=>({newAttributePaper:{padding:e.spacing(2)},attributeName:{background:e.palette.secondary.main,color:e.palette.secondary.contrastText,padding:e.spacing(1)}})));function KN(e){const{onChange:t,value:n}=e;return M.default.createElement(WN,{value:n,onChangeCommitted:e=>{t(e.split(","))},variant:"outlined",fullWidth:!0,helperText:"Separate multiple values for the attribute with commas"})}const YN=p.observer((function({assembly:e,editable:t,feature:n,session:r}){const[o,i]=d.useState(""),[a,s]=d.useState(!1),{classes:l}=JN(),[f,h]=d.useState(""),p=Object.fromEntries([...n.attributes.entries()].map((([e,t])=>{if(e.startsWith("gff_")){const n=e.slice(4);return[n.charAt(0).toUpperCase()+n.slice(1),u.getSnapshot(t)]}return"_id"===e?["ID",u.getSnapshot(t)]:[e,u.getSnapshot(t)]}))),{notify:m}=r,{changeManager:g}=r.apolloDataStore;async function y(t,r){i("");const o={};if(p){const e=Object.entries({...p,[t]:r});for(const[t,n]of e)if(n&&"parent"!==t.toLowerCase())if([...VN.keys()].includes(t))o[t]=n;else switch(t){case"ID":o._id=n;break;case"Name":o.gff_name=n;break;case"Alias":o.gff_alias=n;break;case"Target":o.gff_target=n;break;case"Gap":o.gff_gap=n;break;case"Derives_from":o.gff_derives_from=n;break;case"Note":o.gff_note=n;break;case"Dbxref":o.gff_dbxref=n;break;case"Ontology_term":o.gff_ontology_term=n;break;case"Is_circular":o.gff_is_circular=n;break;default:o[t.toLowerCase()]=n}}const a=new nr.FeatureAttributeChange({changedIds:[n._id],typeName:"FeatureAttributeChange",assembly:e,featureId:n._id,attributes:o});await g.submit(a),m("Feature attributes modified successfully","success")}return M.default.createElement(M.default.Fragment,null,M.default.createElement(c.Typography,{variant:"h5"},"Attributes"),M.default.createElement(c.Grid,{container:!0,direction:"column",spacing:1},Object.entries(p).map((([e,n])=>{if(""===e)return null;const o=VN.get(e)??KN;return 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r){if(a.refSeq!==i.refName)continue;const{end:r,refSeq:s,start:u}=a,c=e.lgv.bpToPx({refName:s,coord:u,regionNumber:o});if(!c)continue;const l=c.offsetPx-e.lgv.offsetPx,f=(r-u)/e.lgv.bpPerPx;t.fillStyle="rgba(0,255,0,.2)",t.fillRect(l,1,f,100),t.fillStyle="black",t.fillText(n.name,l+1,11,f-2)}o++}}}}),{name:"LinearApolloDisplayRenderCollaborators"}))}})))}(0,t);return i.actions((e=>({afterAttach(){u.addDisposer(e,s.autorun((async()=>{if(!e.lgv.initialized||e.regionCannotBeRendered())return;if(e.lgv.bpPerPx>3)return;const t=e.seqTrackCanvas?.getContext("2d");if(!t)return;t.clearRect(0,0,e.lgv.dynamicBlocks.totalWidthPx,e.lgv.bpPerPx<=1?125:95);const r=e.lgv.bpPerPx<=1?[3,2,1,0,0,-1,-2,-3]:[3,2,1,-1,-2,-3];let o=0;for(const n of r){const r=e.theme?.palette.framesCDS.at(n)?.main;r&&(t.fillStyle=r,t.fillRect(0,o,e.lgv.dynamicBlocks.totalWidthPx,e.sequenceRowHeight)),o+=e.sequenceRowHeight}for(const[r,o]of e.regions.entries()){const i=e.session.apolloDataStore.getBackendDriver(o.assemblyName);if(!i)throw new Error("Failed to get the backend driver");const{seq:a}=await i.getSequence(o);if(!a)return;for(const[i,s]of[...a].entries()){const u=(e.lgv.bpToPx({refName:o.refName,coord:o.start+i,regionNumber:r})?.offsetPx??0)-e.lgv.offsetPx,c=3/e.lgv.bpPerPx,l=e.lgv.displayedRegions[r].reversed?u-c:u;for(let n=2;n>=0;n--)(o.start+i)%3===n&&AI(t,e.lgv.bpPerPx,l,e.sequenceRowHeight*(2-n),c,e.sequenceRowHeight,a,i,!1);if(e.lgv.bpPerPx<=1){const a=(e.lgv.bpToPx({refName:o.refName,coord:o.start+i,regionNumber:r})?.offsetPx??0)-e.lgv.offsetPx,u=1/e.lgv.bpPerPx,c=e.lgv.displayedRegions[r].reversed?a-u:a;t.beginPath(),t.fillStyle=kI(s,e.theme),t.rect(c,3*e.sequenceRowHeight,u,e.sequenceRowHeight),t.fill(),e.lgv.bpPerPx<=.1&&(t.stroke(),EI(t,c,u,s,3*e.sequenceRowHeight));const l=n.revcom(s);t.beginPath(),t.fillStyle=kI(l,e.theme),t.rect(c,4*e.sequenceRowHeight,u,e.sequenceRowHeight),t.fill(),e.lgv.bpPerPx<=.1&&(t.stroke(),EI(t,c,u,l,4*e.sequenceRowHeight))}for(let n=0;n<=2;n++)(o.start+i)%3===n&&AI(t,e.lgv.bpPerPx,l,e.sequenceRowHeight*((e.lgv.bpPerPx<=1?5:3)+n),c,e.sequenceRowHeight,a,i,!0)}}}),{name:"LinearApolloDisplayRenderSequence"}))}})))}(0,t).actions((e=>({afterAttach(){u.addDisposer(e,s.autorun((()=>{const{canvas:t,featureLayouts:r,featuresHeight:o,lgv:i}=e;if(!i.initialized||e.regionCannotBeRendered())return;const{displayedRegions:a,dynamicBlocks:s}=i,u=t?.getContext("2d");if(u){u.clearRect(0,0,s.totalWidthPx,o);for(const[t,o]of r.entries()){const r=a[t];for(const[i,a]of o.entries())for(const[o,s]of a)o>0||n.doesIntersect2(r.start,r.end,s.min,s.max)&&iP(s).draw(u,s,i,e,t)}}}),{name:"LinearApolloDisplayRenderFeatures"}))}})))}(0,t);return i.named("LinearApolloDisplayMouseEvents").volatile((()=>({apolloDragging:null,cursor:void 0,apolloHover:void 0}))).views((e=>({getMousePosition(t){const n=function(e,t){const n=e.currentTarget,{clientX:r,clientY:o}=e,{left:i,top:a}=n.getBoundingClientRect(),s=r-i,u=o-a,{coord:c,index:l,refName:f}=t.pxToBp(s);return{x:s,y:u,refName:f,bp:c,regionNumber:l}}(t,e.lgv),{bp:r,regionNumber:o,y:i}=n,a=Math.floor(i/e.apolloRowHeight),s=e.featureLayouts[o].get(a);if(!s)return n;const u=s.find((e=>r>=e[1].min&&r<=e[1].max));if(!u)return n;const[c,l]=u,f=iP(l),d=f.getFeatureFromLayout(l,r,c);return d?{...n,featureAndGlyphUnderMouse:{feature:d,topLevelFeature:l,glyph:f}}:n}}))).actions((e=>({continueDrag(t,n){if(!e.apolloDragging)throw new Error("continueDrag() called with no current drag in progress");n.stopPropagation(),e.apolloDragging={...e.apolloDragging,current:t}},setDragging(t){e.apolloDragging=t??null}}))).actions((e=>({setApolloHover(t){e.apolloHover=t},setCursor(t){e.cursor!==t&&(e.cursor=t)}}))).actions((()=>({onClick(){}})))}(0,t).actions((e=>({afterAttach(){u.addDisposer(e,s.autorun((()=>{if(!e.lgv.initialized||e.regionCannotBeRendered())return;const t=e.seqTrackOverlayCanvas?.getContext("2d");if(!t)return;t.clearRect(0,0,e.lgv.dynamicBlocks.totalWidthPx,e.lgv.bpPerPx<=1?125:95);const{apolloHover:r,lgv:o,regions:i,sequenceRowHeight:a,theme:s}=e;if(!r)return;const{feature:u}=r;for(const[e,r]of i.entries())if("CDS"===u.type){const i=u.parent;if(!i)continue;const c=i.cdsLocations.find((e=>u.min===e.at(0)?.min&&u.max===e.at(-1)?.max));if(!c)continue;for(const i of c){const c=OI(n.getFrame(i.min,i.max,u.strand??1,i.phase),o.bpPerPx),l=(o.bpToPx({refName:r.refName,coord:i.min,regionNumber:e})?.offsetPx??0)-o.offsetPx,f=(i.max-i.min)/o.bpPerPx;NI(t,s,o.displayedRegions[e].reversed?l-f:l,a,c,f)}}else{const n=RI(u.strand,o.bpPerPx),i=(o.bpToPx({refName:r.refName,coord:u.min,regionNumber:e})?.offsetPx??0)-o.offsetPx,c=u.length/o.bpPerPx;NI(t,s,o.displayedRegions[e].reversed?i-c:i,a,n,c)}}),{name:"LinearApolloDisplayRenderSeqHighlight"}))}})))}(0,t);return i.views((e=>({contextMenuItems(t){const{apolloHover:n}=e;if(!n||!t)return[];const{topLevelFeature:r}=n;return iP(r).getContextMenuItems(e)}}))).actions((e=>({startDrag(t,n,r){e.apolloDragging={start:t,current:t,feature:n,edge:r}},endDrag(){if(!e.apolloDragging)throw new Error("endDrag() called with no current drag in progress");const{current:t,edge:n,feature:r,start:o}=e.apolloDragging;if(Math.abs(t.x-o.x)<=4)return e.setDragging(),void e.setCursor();const{displayedRegions:i}=e.lgv,a=e.getAssemblyId(i[o.regionNumber].assemblyName);let s;if("max"===n){const e=r._id;s=new nr.LocationEndChange({typeName:"LocationEndChange",changedIds:[e],featureId:e,oldEnd:r.max,newEnd:t.bp,assembly:a})}else{const e=r._id;s=new nr.LocationStartChange({typeName:"LocationStartChange",changedIds:[e],featureId:e,oldStart:r.min,newStart:t.bp,assembly:a})}e.changeManager.submit(s),e.setDragging(),e.setCursor()}}))).actions((e=>({onMouseDown(t){const n=e.getMousePosition(t);CI(n)&&n.featureAndGlyphUnderMouse.glyph.onMouseDown(e,n,t)},onMouseMove(t){const n=e.getMousePosition(t);if(e.apolloDragging)return e.setCursor("col-resize"),void e.continueDrag(n,t);CI(n)?n.featureAndGlyphUnderMouse.glyph.onMouseMove(e,n,t):(e.setApolloHover(),e.setCursor())},onMouseLeave(t){e.setDragging(),e.setApolloHover();const n=e.getMousePosition(t);CI(n)&&n.featureAndGlyphUnderMouse.glyph.onMouseLeave(e,n,t)},onMouseUp(t){const n=e.getMousePosition(t);CI(n)&&n.featureAndGlyphUnderMouse.glyph.onMouseUp(e,n,t),e.apolloDragging&&e.endDrag()}}))).actions((e=>({afterAttach(){u.addDisposer(e,s.autorun((()=>{if(!e.lgv.initialized||e.regionCannotBeRendered())return;const t=e.overlayCanvas?.getContext("2d");if(!t)return;t.clearRect(0,0,e.lgv.dynamicBlocks.totalWidthPx,e.featuresHeight);const{apolloDragging:n,apolloHover:r}=e;if(!r)return;const{glyph:o}=r;o.drawHover(e,t),o.drawTooltip(e,t),n&&iP(n.feature.topLevelFeature).drawDragPreview(e,t)}),{name:"LinearApolloDisplayRenderMouseoverAndDrag"}))}})))}(0,t).props({tabularEditor:u.types.optional(xP,{})}).named("LinearApolloDisplay")}var EP={},AP=Ju.exports;Object.defineProperty(EP,"__esModule",{value:!0});var CP=EP.default=void 0;CP=EP.default=(0,AP(Ku).default)((0,N.default.jsx)("path",{d:"m12 8-6 6 1.41 1.41L12 10.83l4.59 4.58L18 14z"}),"ExpandLess");var OP={},RP=Ju.exports;Object.defineProperty(OP,"__esModule",{value:!0});var NP=OP.default=void 0;NP=OP.default=(0,RP(Ku).default)((0,N.default.jsx)("path",{d:"M16.59 8.59 12 13.17 7.41 8.59 6 10l6 6 6-6z"}),"ExpandMore");var IP={},PP=Ju.exports;Object.defineProperty(IP,"__esModule",{value:!0});var TP=IP.default=void 0;TP=IP.default=(0,PP(Ku).default)((0,N.default.jsx)("path",{d:"M12 2C6.48 2 2 6.48 2 12s4.48 10 10 10 10-4.48 10-10S17.52 2 12 2zm1 15h-2v-2h2v2zm0-4h-2V7h2v6z"}),"Error");const MP=m.makeStyles()((e=>({canvasContainer:{position:"relative",left:0},canvas:{position:"absolute",left:0},ellipses:{textOverflow:"ellipsis",overflow:"hidden"},avatar:{position:"absolute",color:e.palette.warning.light,backgroundColor:e.palette.warning.contrastText}}))),jP=p.observer((function(e){const t=c.useTheme(),{model:r}=e,{apolloRowHeight:o,contextMenuItems:i,cursor:a,featuresHeight:s,isShown:u,onMouseDown:l,onMouseLeave:f,onMouseMove:p,onMouseUp:m,regionCannotBeRendered:g,session:y,setCanvas:v,setCollaboratorCanvas:_,setOverlayCanvas:b,setSeqTrackCanvas:w,setSeqTrackOverlayCanvas:S,setTheme:x}=r,{classes:k}=MP(),E=n.getContainingView(r);d.useEffect((()=>{x(t)}),[t,x]);const[A,C]=d.useState(),[O,R]=d.useState([]),N=g();if(!u)return null;const{assemblyManager:I}=y;return M.default.createElement(M.default.Fragment,null,E.bpPerPx<=3?M.default.createElement("div",{className:k.canvasContainer,style:{width:E.dynamicBlocks.totalWidthPx,height:E.bpPerPx<=1?125:95}},M.default.createElement("canvas",{ref:async e=>{await Promise.resolve(),w(e)},width:E.dynamicBlocks.totalWidthPx,height:E.bpPerPx<=1?125:95,className:k.canvas,"data-testid":"seqTrackCanvas"}),M.default.createElement("canvas",{ref:async e=>{await Promise.resolve(),S(e)},width:E.dynamicBlocks.totalWidthPx,height:E.bpPerPx<=1?125:95,className:k.canvas,"data-testid":"seqTrackOverlayCanvas"})):null,M.default.createElement("div",{className:k.canvasContainer,style:{width:E.dynamicBlocks.totalWidthPx,height:s},onContextMenu:e=>{if(e.preventDefault(),O.length>0)R([]);else{const t=[e.clientX,e.clientY];C(t),R(i(t))}}},N?M.default.createElement(c.Alert,{severity:"warning",classes:{message:k.ellipses}},M.default.createElement(c.Tooltip,{title:N},M.default.createElement("div",null,N))):M.default.createElement(M.default.Fragment,null,M.default.createElement("canvas",{ref:async e=>{await Promise.resolve(),_(e)},width:E.dynamicBlocks.totalWidthPx,height:s,className:k.canvas,"data-testid":"collaboratorCanvas"}),M.default.createElement("canvas",{ref:async e=>{await Promise.resolve(),v(e)},width:E.dynamicBlocks.totalWidthPx,height:s,className:k.canvas,"data-testid":"canvas"}),M.default.createElement("canvas",{ref:async e=>{await Promise.resolve(),b(e)},width:E.dynamicBlocks.totalWidthPx,height:s,onMouseMove:p,onMouseLeave:f,onMouseDown:l,onMouseUp:m,className:k.canvas,style:{cursor:a??"default"},"data-testid":"overlayCanvas"}),E.displayedRegions.flatMap(((e,t)=>{const i=I.get(e.assemblyName);return[...y.apolloDataStore.checkResults.values()].filter((t=>i?.isValidRefName(t.refSeq)&&i.getCanonicalRefName(t.refSeq)===e.refName&&n.doesIntersect2(e.start,e.end,t.start,t.end))).map((n=>{const i=(E.bpToPx({refName:e.refName,coord:n.start,regionNumber:t})?.offsetPx??0)-E.offsetPx,[a]=n.ids;if(!a)return null;const{topLevelFeature:s}=a,u=parent?r.getFeatureLayoutPosition(s)?.layoutRow??0:0;return M.default.createElement(c.Tooltip,{key:n._id,title:n.message},M.default.createElement(c.Avatar,{className:k.avatar,style:{top:u*o,left:i,height:o,width:o}},M.default.createElement(TP,null)))}))})),M.default.createElement(h.Menu,{open:O.length>0,onMenuItemClick:(e,t)=>{t(),R([])},onClose:()=>{R([])},TransitionProps:{onExit:()=>{R([])}},anchorReference:"anchorPosition",anchorPosition:A?{top:A[1],left:A[0]}:void 0,style:{zIndex:t.zIndex.tooltip},menuItems:O}))))})),FP=p.observer((function({model:e}){const{height:t}=e;return M.default.createElement("div",{style:{position:"absolute",left:0,top:t/2,width:"100%"}},M.default.createElement("hr",{style:{margin:0,top:0,color:"black"}}))})),LP=m.makeStyles()((e=>({shading:{background:c.alpha(e.palette.primary.main,.2),overflowY:"scroll",overflowX:"hidden"},details:{background:e.palette.background.paper},accordionControl:{height:12,width:"100%","&:hover":{background:e.palette.action.hover},display:"flex",alignItems:"center",justifyContent:"center"},accordionRoot:{background:e.palette.divider},resizeHandle:{width:"100%",height:4,position:"absolute",cursor:"row-resize",zIndex:100},expandIcon:{},title:{userSelect:"none"},alertContainer:{display:"flex",alignItems:"center",justifyContent:"center"}}))),DP=({onResize:e})=>{const{classes:t}=LP(),n=d.useCallback((t=>{t.stopPropagation(),t.preventDefault(),e(t.movementY)}),[e]),r=d.useCallback((e=>{e.stopPropagation(),e.preventDefault(),globalThis.removeEventListener("mousemove",n),globalThis.removeEventListener("mouseup",r),globalThis.removeEventListener("mouseleave",r)}),[n]);return M.default.createElement("div",{onMouseDown:e=>{e.stopPropagation(),globalThis.addEventListener("mousemove",n),globalThis.addEventListener("mouseup",r),globalThis.addEventListener("mouseleave",r)},onClick:e=>{e.stopPropagation(),e.preventDefault()},className:t.resizeHandle})},qP=p.observer((function({onClick:e,onResize:t,open:n,title:r}){const{classes:o}=LP();return M.default.createElement("div",{className:o.accordionRoot},n&&t?M.default.createElement(DP,{onResize:t}):null,M.default.createElement("div",{className:o.accordionControl,onClick:e},M.default.createElement(n?CP:NP,{className:o.expandIcon}),r?M.default.createElement(c.Typography,{className:o.title,variant:"caption",component:"span"},r):null))})),BP=p.observer((function({model:e,...t}){const r=n.getSession(e),{ontologyManager:o}=r.apolloDataStore,{featureTypeOntology:i}=o,a=i?.dataStore,{classes:s}=LP(),{detailsHeight:u,graphical:l,height:f,isShown:h,selectedFeature:p,table:m,tabularEditor:g,toggleShown:y}=e,v=d.useRef(null);d.useEffect((()=>{!function(e,t){const{apolloRowHeight:n,selectedFeature:r}=e;if(t.current&&r){const o=e.getFeatureLayoutPosition(r);o&&t.current.scroll({top:(o.layoutRow+o.featureRow)*n,behavior:"smooth"})}}(e,v)}),[e,p]);const _=t=>{e.setDetailsHeight(u-t)};if(!a)return M.default.createElement("div",{className:s.alertContainer},M.default.createElement(c.Alert,{severity:"error"},"Could not load feature type ontology."));if(l&&m){const n=g.isShown?u:0,r=h?f-u-24:0;return M.default.createElement("div",{style:{height:f}},M.default.createElement(qP,{open:h,title:"Graphical",onClick:y}),M.default.createElement("div",{className:s.shading,ref:v,style:{height:r}},M.default.createElement(jP,{model:e,...t})),M.default.createElement(qP,{title:"Table",open:g.isShown,onClick:g.togglePane,onResize:_}),M.default.createElement("div",{className:s.details,style:{height:n}},M.default.createElement(SP,{model:e})))}return l?M.default.createElement("div",{className:s.shading,ref:v,style:{height:f}},M.default.createElement(jP,{model:e,...t})):M.default.createElement("div",{className:s.details,style:{height:f}},M.default.createElement(SP,{model:e}))}));var UP={},zP=Ju.exports;Object.defineProperty(UP,"__esModule",{value:!0});var GP=UP.default=void 0;GP=UP.default=(0,zP(Ku).default)((0,N.default.jsx)("path",{d:"M17 3H5c-1.11 0-2 .9-2 2v14c0 1.1.89 2 2 2h14c1.1 0 2-.9 2-2V7l-4-4zm-5 16c-1.66 0-3-1.34-3-3s1.34-3 3-3 3 1.34 3 3-1.34 3-3 3zm3-10H5V5h10v4z"}),"Save");const HP=u.types.model("JobsManager",{}).views((e=>({get jobStatusWidget(){const{widgets:t}=n.getSession(e);let r=t.get("JobsList");return r||(r=n.getSession(e).addWidget("JobsListWidget","JobsList")),r}}))).actions((e=>({update(t,n,r){e.jobStatusWidget.updateJobStatusMessage(t,n),r&&e.jobStatusWidget.updateJobProgressPct(t,r)},abortJob(t,r){const o=n.getSession(e);if(n.isSessionModelWithWidgets(o)){o.showWidget(e.jobStatusWidget),e.jobStatusWidget.updateJobStatusMessage(t,r??"Aborted unexpectedly");const n=e.jobStatusWidget.jobs.findIndex((e=>e.name===t));e.jobStatusWidget.addAbortedJob({...e.jobStatusWidget.jobs[n]}),e.jobStatusWidget.removeJob(t),o.notify("Job aborted","info")}},runJob(t){const r=n.getSession(e);n.isSessionModelWithWidgets(r)&&(r.showWidget(e.jobStatusWidget),e.jobStatusWidget.addJob(t))},done(t){const r=n.getSession(e);n.isSessionModelWithWidgets(r)&&(r.showWidget(e.jobStatusWidget),e.jobStatusWidget.removeJob(t.name),e.jobStatusWidget.addFinishedJob({name:t.name,statusMessage:"All operations successful",progressPct:100,cancelCallback:t.cancelCallback}))}})));class WP{clientStore;constructor(e){this.clientStore=e}}class VP{dataStore;constructor(e){this.dataStore=e}recentChanges=[];async submit(e,t={}){const{addToRecents:r=!0,submitToBackend:o=!0,updateJobsManager:i=!1}=t,a=n.getSession(this.dataStore),s=new AbortController,{jobsManager:u}=n.getSession(this.dataStore),c={name:e.typeName,statusMessage:"Pre-validating",progressPct:0,cancelCallback:()=>{s.abort()}};i&&u.runJob(c);const l=await nr.validationRegistry.frontendPreValidate(e);if(!l.ok){const e=`Pre-validation failed: "${l.resultsMessages}"`;return i&&u.abortJob(c.name,e),void a.notify(e,"error")}try{await e.execute(this.dataStore)}catch(e){return i&&u.abortJob(c.name,String(e)),console.error(e),void a.notify(String(e),"error")}if((await nr.validationRegistry.frontendPostValidate(e,this.dataStore)).ok||await this.revert(e),o){i&&u.update(c.name,"Submitting to driver");const{collaborationServerDriver:n,getBackendDriver:r}=this.dataStore,o=z.isAssemblySpecificChange(e)?r(e.assembly):n;let s;try{s=await o.submitChange(e,t)}catch(t){return i&&u.abortJob(c.name,String(t)),console.error(t),a.notify(String(t),"error"),void await this.revert(e,!1)}if(!s.ok){const t=`Post-validation failed: "${l.resultsMessages}"`;return i&&u.abortJob(c.name,t),a.notify(t,"error"),void await this.revert(e,!1)}e.notification&&a.notify(e.notification,"success")}r&&this.recentChanges.push(e),i&&u.done(c)}async revert(e,t=!0){const n=e.getInverse();return this.submit(n,{submitToBackend:t,addToRecents:!1})}async revertLastChange(){const e=this.recentChanges.pop();if(e)return this.revert(e);n.getSession(this.dataStore).notify("No changes to undo!","warning")}}class $P extends WP{inFlight=new Map;async fetch(e,t,n){return e.getFetcher({locationType:"UriLocation",uri:t.toString()})(t,n)}async searchFeatures(e,t){const n=this.clientStore.getInternetAccount(t[0]),{baseURL:r}=n,o=new URL("features/searchFeatures",r),i=new URLSearchParams({assemblies:t.join(","),term:e});o.search=i.toString();const a=o.toString(),s=await this.fetch(n,a);if(!s.ok){const e=await md(s,"searchFeatures failed");throw new Error(e)}return s.json()}async getFeatures(e){const{assemblyName:t,end:o,refName:i,start:a}=e,{assemblyManager:s}=n.getSession(this.clientStore),u=s.get(t);if(!u)throw new Error(`Could not find assembly with name "${t}"`);const{ids:c}=r.getConf(u,["sequence","metadata"]),l=c[i];if(!l)throw new Error(`Could not find refSeq "${i}"`);const f=this.clientStore.getInternetAccount(t),{baseURL:d}=f,h=new URL("features/getFeatures",d),p=new URLSearchParams({refSeq:l,start:String(a),end:String(o)});h.search=p.toString();const m=h.toString(),g=await this.fetch(f,m);if(!g.ok){const e=await md(g,"getFeatures failed");throw new Error(e)}return this.checkSocket(t,i,f),g.json()}checkSocket(e,t,n){const{socket:r}=n,o=n.retrieveToken(),i=`${e}-${t}`,a=new VP(this.clientStore);r.hasListeners(i)||r.on(i,(async e=>{if(n.setLastChangeSequenceNumber(Number(e.changeSequence)),e.userSessionId!==o&&e.channel===i){const t=z.Change.fromJSON(e.changeInfo);await a.submit(t,{submitToBackend:!1})}}))}async getSequence(e){const t=`${e.refName}:${e.start}-${e.end}`,o=this.inFlight.get(t),{assemblyName:i,end:a,refName:s,start:u}=e,{assemblyManager:c}=n.getSession(this.clientStore),l=c.get(i);if(!l)throw new Error(`Could not find assembly with name "${i}"`);const{ids:f}=r.getConf(l,["sequence","metadata"]),d=f[s];if(!d)throw new Error(`Could not find refSeq "${s}"`);if(o)return{seq:await o,refSeq:d};let h=this.clientStore.assemblies.get(i);h||(h=this.clientStore.addAssembly(i));let p=h.refSeqs.get(d);p||(p=h.addRefSeq(d,s));const m=p.getSequence(u,a);if(m.length===a-u)return{seq:m,refSeq:d};const g=this.clientStore.getInternetAccount(i),{baseURL:y}=g,v=new URL("sequence",y),_=new URLSearchParams({refSeq:d,start:String(u),end:String(a)});v.search=_.toString();const b=v.toString(),w=this.getSeqFromServer(g,b,p,u,a);this.inFlight.set(t,w);const S=await w;return this.checkSocket(i,s,g),this.inFlight.delete(t),{seq:S,refSeq:d}}async getSeqFromServer(e,t,n,r,o){const i=await this.fetch(e,t);if(!i.ok){let e;try{e=await i.text()}catch{e=""}throw new Error(`getSequence failed: ${i.status} (${i.statusText})${e?` (${e})`:""}`)}const a=await i.text();return n.addSequence({sequence:a,start:r,stop:o}),a}async getRefNameAliases(e){const{assemblyManager:t}=n.getSession(this.clientStore);if(!t.get(e))throw new Error(`Could not find assembly with name "${e}"`);const r=this.clientStore.getInternetAccount(e),{baseURL:o}=r,i=new URL("refSeqs",o),a=new URLSearchParams({assembly:e});i.search=a.toString();const s=i.toString(),u=await this.fetch(r,s);if(!u.ok){let e;try{e=await u.text()}catch{e=""}throw new Error(`getRefNameAliases failed: ${u.status} (${u.statusText})${e?` (${e})`:""}`)}return(await u.json()).map((e=>({refName:e.name,aliases:[e._id,...e.aliases],uniqueId:`alias-${e._id}`})))}async getRegions(e){const{assemblyManager:t}=n.getSession(this.clientStore);if(!t.get(e))throw new Error(`Could not find assembly with name "${e}"`);const r=this.clientStore.getInternetAccount(e),{baseURL:o}=r,i=new URL("refSeqs",o),a=new URLSearchParams({assembly:e});i.search=a.toString();const s=i.toString(),u=await this.fetch(r,s);if(!u.ok){let e;try{e=await u.text()}catch{e=""}throw new Error(`getRegions failed: ${u.status} (${u.statusText})${e?` (${e})`:""}`)}return(await u.json()).map((e=>({refName:e.name,start:0,end:e.length})))}getAssemblies(e){const{assemblyManager:t}=n.getSession(this.clientStore);return t.assemblies.filter((t=>{const n=r.getConf(t,["sequence","metadata"]);return!(!(n&&n.apollo&&n.internetAccountConfigId)||e&&n.internetAccountConfigId!==e)}))}async submitChange(e,t={}){const{internetAccountId:n}=t,r=this.clientStore.getInternetAccount("assembly"in e?e.assembly:void 0,n),{baseURL:o}=r,i=new URL("changes",o).href,a=await this.fetch(r,i,{method:"POST",body:JSON.stringify(e.toJSON()),headers:{"Content-Type":"application/json"}});if(!a.ok){const e=await md(a,"submitChange failed");throw new Error(e)}const s=new nr.ValidationResultSet;return a.ok||(s.ok=!1),s}}class JP extends WP{async getFeatures(){return[[],[]]}async getSequence(e){const{assemblyName:t,end:n,refName:r,start:o}=e,i=this.clientStore.assemblies.get(t);if(!i)return{seq:"",refSeq:r};const a=i.refSeqs.get(r);return a?{seq:a.getSequence(o,n),refSeq:r}:{seq:"",refSeq:r}}async getRefNameAliases(e){const t=this.clientStore.assemblies.get(e),n=[];if(!t)return n;for(const[,e]of t.refSeqs)n.push({refName:e.name,aliases:[e._id],uniqueId:`alias-${e._id}`});return n}async getRegions(e){const t=this.clientStore.assemblies.get(e);if(!t)return[];const n=[];for(const[,r]of t.refSeqs)n.push({assemblyName:e,refName:r.name,start:r.sequence[0].start,end:r.sequence[0].stop});return n}getAssemblies(){const{assemblyManager:e}=n.getSession(this.clientStore);return e.assemblies.filter((e=>{const t=r.getConf(e,["sequence","metadata"]);return Boolean(t&&t.apollo&&!t.file&&!t.internetAccountConfigId)}))}async submitChange(e,t={}){const{clientStore:n}=this,{assemblies:r}=n;n.clearCheckResults();for(const[,e]of r)if("InMemoryFileDriver"===e.backendDriverType){const t=await pd(e);n.addCheckResults(t)}return new nr.ValidationResultSet}async searchFeatures(e,t){return[]}}class KP extends WP{async loadAssembly(e){const{assemblyManager:t}=n.getSession(this.clientStore),o=t.get(e);if(!o)throw new Error(`Assembly ${e} not found`);const{file:i}=r.getConf(o,["sequence","metadata"]),a=require("node:fs");return hd(e,await a.promises.readFile(i,"utf8"),this.clientStore)}async getAssembly(e){let t=this.clientStore.assemblies.get(e);return t||(t=await this.loadAssembly(e)),t}async getRefNameAliases(e){const t=await this.getAssembly(e),n=[];for(const[,e]of t.refSeqs)n.push({refName:e.name,aliases:[e._id],uniqueId:`alias-${e._id}`});return n}async getFeatures(e){return await this.getAssembly(e.assemblyName),[[],[]]}async getSequence(e){const{assemblyName:t,end:n,refName:r,start:o}=e,i=(await this.getAssembly(t)).refSeqs.get(r);if(!i)throw new Error(`refSeq ${r} not found in client data store`);return{seq:i.getSequence(o,n),refSeq:r}}async getRegions(e){const t=await this.getAssembly(e),n=[];for(const[,r]of t.refSeqs)n.push({assemblyName:e,refName:r.name,start:r.sequence[0].start,end:r.sequence[0].stop});return n}getAssemblies(){const{assemblyManager:e}=n.getSession(this.clientStore);return e.assemblies.filter((e=>{const t=r.getConf(e,["sequence","metadata"]);return Boolean(t&&t.apollo&&!t.internetAccountConfigId&&t.file)}))}async submitChange(e){if(!z.isAssemblySpecificChange(e))throw new Error(`Cannot use this type of change with local file: "${e.typeName}"`);const{assemblyManager:t}=n.getSession(this.clientStore),o=t.get(e.assembly);if(!o)throw new Error(`Could not find assembly with name "${e.assembly}"`);const{file:i}=r.getConf(o,["sequence","metadata"]),a=this.clientStore.assemblies.get(e.assembly);if(!a)throw new Error(`Could not find assembly in client with name "${e.assembly}"`);const s=new Set(...a.refSeqs.keys()),{checkResults:c}=this.clientStore;for(const e of c.values())s.has(e.refSeq)&&c.delete(e._id);const l=await pd(a);this.clientStore.addCheckResults(l);const f=[{directive:"gff-version",value:"3"}];for(const[,e]of a.refSeqs)f.push({directive:"sequence-region",value:`${e.name} 1 ${e.sequence[0].stop}`});for(const e of a.comments)f.push({comment:e});for(const[,e]of a.refSeqs){const{features:t}=e;for(const[,e]of t)f.push(nr.annotationFeatureToGFF3(u.getSnapshot(e)))}for(const[,e]of a.refSeqs){const[t]=e.sequence,n=nr.splitStringIntoChunks(t.sequence,80).join("\n");f.push({id:e.name,description:e.description,sequence:n})}const d=dd.formatSync(f),h=require("node:fs");return await h.promises.writeFile(i,d,"utf8"),new nr.ValidationResultSet}async searchFeatures(e,t){return[]}}function YP(e,t){const o=new AbortController,{signal:i}=o,a=e.evaluateExtensionPoint("Apollo-extendAnnotationFeature",rI.AnnotationFeatureModel),c=function(e){return u.types.model("ClientDataStore",{typeName:u.types.optional(u.types.literal("Client"),"Client"),assemblies:u.types.map(rI.ApolloAssembly),checkResults:u.types.map(rI.CheckResult),ontologyManager:u.types.optional(xR,{})}).views((t=>({get internetAccounts(){return u.getRoot(t).internetAccounts},get pluginConfiguration(){return u.getRoot(t).jbrowse.configuration.ApolloPlugin},getFeature:n=>u.resolveIdentifier(e,t.assemblies,n)}))).actions((e=>({addAssembly(t,n){const r={_id:t,refSeqs:{}};return n&&(r.backendDriverType=n),e.assemblies.put(r)},addFeature(t,n){const r=e.assemblies.get(t);if(!r)throw new Error(`Could not find assembly "${t}" to add feature "${n._id}"`);const o=r.refSeqs.get(n.refSeq);if(!o)throw new Error(`Could not find refSeq "${n.refSeq}" to add feature "${n._id}"`);o.features.put(n)},deleteFeature(t){const n=e.getFeature(t);if(!n)throw new Error(`Could not find feature "${t}" to delete`);const{_id:r,parent:o}=n;o?o.deleteChild(t):u.getParentOfType(n,rI.ApolloRefSeq).deleteFeature(r)},deleteAssembly(t){e.assemblies.delete(t)},addCheckResult(t){e.checkResults.put(t)},addCheckResults(t){for(const n of t)e.checkResults.has(n._id)||e.checkResults.put(n)},deleteCheckResult(t){e.checkResults.delete(t)},clearCheckResults(){e.checkResults.clear()}}))).volatile((e=>({changeManager:new VP(e),collaborationServerDriver:new $P(e),inMemoryFileDriver:new JP(e),desktopFileDriver:n.isElectron?new KP(e):void 0}))).actions((e=>({afterCreate(){u.addDisposer(e,s.autorun((()=>{const{ontologyManager:t,pluginConfiguration:n}=e,o=n.ontologies;for(const e of o||[]){const[n,o,i,a]=[r.readConfObject(e,"name"),r.readConfObject(e,"version"),r.readConfObject(e,"source"),r.readConfObject(e,"textIndexFields")];t.findOntology(n)||t.addOntology(n,o,i,{textIndexing:{indexFields:a}})}})))}}))).views((e=>({getBackendDriver(t){if(!t)return e.collaborationServerDriver;const o=n.getSession(e),{assemblyManager:i}=o,a=i.get(t);if(!a)return e.collaborationServerDriver;const{file:s,internetAccountConfigId:u}=r.getConf(a,["sequence","metadata"]);return n.isElectron&&s?e.desktopFileDriver:u?e.collaborationServerDriver:e.inMemoryFileDriver},getInternetAccount(t,o){if(!(t??o))throw new Error("Must provide either assemblyName or internetAccountId");let i=o;if(t&&!i){const{assemblyManager:o}=n.getSession(e),a=o.get(t);if(!a)throw new Error(`No assembly found with name ${t}`);({internetAccountConfigId:i}=r.getConf(a,["sequence","metadata"]))}const{internetAccounts:a}=e,s=a.find((e=>e.internetAccountId===i));if(!s)throw new Error(`No InternetAccount found with config id ${o}`);return s}}))).actions((e=>({loadFeatures:u.flow((function*(t){for(const n of t){const t=e.getBackendDriver(n.assemblyName);if(!t)return;const[r,o]=yield t.getFeatures(n);if(0===r.length)continue;const{assemblyName:i,refName:a}=n;let s=e.assemblies.get(i);s||(s=e.assemblies.put({_id:i,refSeqs:{}}));const[u]=r;let c=s.refSeqs.get(u.refSeq);c||(c=s.refSeqs.put({_id:u.refSeq,name:a,features:{}}));for(const e of r)c.features.has(e._id)||c.features.put(e);e.addCheckResults(o)}})),loadRefSeq:u.flow((function*(t){for(const n of t){const t=e.getBackendDriver(n.assemblyName);if(!t)return;const{refSeq:r,seq:o}=yield t.getSequence(n),{assemblyName:i,end:a,refName:s,start:u}=n;let c=e.assemblies.get(i);c||(c=e.assemblies.put({_id:i,refSeqs:{}}));let l=c.refSeqs.get(r);l||(l=c.refSeqs.put({_id:r,name:s,sequence:[]})),l.addSequence({start:u,stop:a,sequence:o})}}))})))}(a),l=t.props({apolloDataStore:u.types.optional(c,{typeName:"Client"}),apolloSelectedFeature:u.types.safeReference(a),jobsManager:u.types.optional(HP,{})}).extend((()=>{const e=s.observable.array([]);return{views:{get collaborators(){return e}},actions:{addOrUpdateCollaborator(t){const n=e.find((e=>e.id===t.id));n?n.locations=t.locations:e.push(t)}}}})).actions((e=>({apolloSetSelectedFeature(t){e.apolloSelectedFeature=t},addApolloTrackConfig(t,n){const o=`apollo_track_${t.name}`;e.tracks.some((e=>e.trackId===o))||e.addTrackConf({type:"ApolloTrack",trackId:o,name:`Annotations (${r.getConf(t,"displayName")||t.name})`,assemblyNames:[t.name],textSearching:{textSearchAdapter:{type:"ApolloTextSearchAdapter",trackId:o,assemblyNames:[t.name],textSearchAdapterId:`apollo_search_${t.name}`,...n?{baseURL:{uri:n,locationType:"UriLocation"}}:{}}},displays:[{type:"LinearApolloDisplay",displayId:`${o}-LinearApolloDisplay`},{type:"SixFrameFeatureDisplay",displayId:`${o}-SixFrameFeatureDisplay`}]})},broadcastLocations(){const{internetAccounts:t}=u.getRoot(e),n=[];for(const t of e.views){if("LinearGenomeView"!==t.type)return;const r=t;if(r.initialized){const{dynamicBlocks:t}=r;t.forEach((t=>{if(void 0!==t.regionNumber){const{assemblyName:r,end:o,refName:i,start:a}=t,s=e.apolloDataStore.assemblies.get(r);s&&"CollaborationServerDriver"===s.backendDriverType&&n.push({assemblyName:r,refName:i,start:a,end:o})}}))}}if(0===n.length){for(const e of t)"baseURL"in e&&e.postUserLocation([]);return}const r=[];for(const e of t)if("baseURL"in e){for(const e of n)r.push({assemblyId:e.assemblyName,refSeq:e.refName,start:e.start,end:e.end});e.postUserLocation(r)}}}))).actions((e=>({afterCreate:u.flow((function*(){const t=u.getSnapshot(e),{id:n,name:r}=t;u.applySnapshot(e,{name:r,id:n});const{internetAccounts:o,jbrowse:a}=u.getRoot(e);s.autorun((()=>{const t=[];for(const n of e.views){if("LinearGenomeView"!==n.type)return;const r=n;if(r.initialized){const{dynamicBlocks:n}=r;n.forEach((n=>{if(void 0!==n.regionNumber){const{assemblyName:r,end:o,refName:i,start:a}=n,s=e.apolloDataStore.assemblies.get(r);s&&"CollaborationServerDriver"===s.backendDriverType&&t.push({assemblyName:r,refName:i,start:a,end:o})}}))}}if(0===t.length){for(const e of o)"baseURL"in e&&e.postUserLocation([]);return}const n=[];for(const e of o)if("baseURL"in e){for(const e of t)n.push({assemblyId:e.assemblyName,refSeq:e.refName,start:e.start,end:e.end});e.postUserLocation(n)}}),{name:"ApolloSession"});for(const n of o){if("ApolloInternetAccount"!==n.type)continue;const{baseURL:r}=n,o=new URL("jbrowse/config.json",r).href,s=n.getFetcher({locationType:"UriLocation",uri:o});let c,l;try{c=yield s(o,{signal:i})}catch(e){console.error(e);continue}if(c.ok){try{l=yield c.json()}catch(e){console.error(e);continue}u.applySnapshot(a,l),u.applySnapshot(e,t)}else{const e=yield md(c,"Failed to fetch assemblies");console.error(e)}}})),beforeDestroy(){o.abort("destroying session model")}}))).views((e=>{const t=e.getTrackActionMenuItems;return{getTrackActionMenuItems(n){if("ApolloTrack"===n.type||"ReferenceSequenceTrack"===n.type)return t?.(n);const o=r.readConfObject(n,"trackId");return o.endsWith("-sessionTrack")?[...t?.(n)??[],{label:"Save track to Apollo",onClick:async()=>{const{internetAccounts:t,jbrowse:r}=u.getRoot(e),i=u.getSnapshot(r);let a;a=nr.filterJBrowseConfig(i),0===Object.keys(a).length&&(a=void 0);const s={...u.getSnapshot(n),trackId:o.slice(0,o.length-13)};for(const n of t){if("ApolloInternetAccount"!==n.type)continue;const t=new nr.ImportJBrowseConfigChange({typeName:"ImportJBrowseConfigChange",oldJBrowseConfig:a,newJBrowseConfig:{...a,tracks:a?.tracks&&[...a.tracks,s]}}),{internetAccountId:r}=n;await e.apolloDataStore.changeManager.submit(t,{internetAccountId:r});const{notify:o}=e;o("Track added","success")}e.deleteTrackConf(n),r.addTrackConf(s)},icon:GP}]:[...t?.(n)??[],{label:"Remove track from Apollo",onClick:async()=>{const{internetAccounts:t,jbrowse:r}=u.getRoot(e),i=u.getSnapshot(r);let a;a=nr.filterJBrowseConfig(i),0===Object.keys(a).length&&(a=void 0);const s=a?.tracks?.filter((e=>e.trackId!==o));for(const n of t){if("ApolloInternetAccount"!==n.type)continue;const t=new nr.ImportJBrowseConfigChange({typeName:"ImportJBrowseConfigChange",oldJBrowseConfig:a,newJBrowseConfig:{...a,tracks:s}}),{internetAccountId:r}=n;await e.apolloDataStore.changeManager.submit(t,{internetAccountId:r});const{notify:o}=e;o("Track removed","success")}e.deleteTrackConf(n),r.deleteTrackConf(n)},icon:GP}]}}}));return u.types.snapshotProcessor(l,{postProcessor(e,t){e.apolloSelectedFeature=void 0;const n=Object.fromEntries(Object.entries(e.apolloDataStore.assemblies).filter((([,e])=>"InMemoryFileDriver"===e.backendDriverType)));if(e.apolloDataStore={typeName:"Client",assemblies:n,checkResults:{}},!t)return e;const{apolloDataStore:r}=t,{checkResults:o}=r;for(const[,t]of o){const[n]=t.ids;if(!n)continue;const o=r.assemblies.get(n.assemblyId);o&&"InMemoryFileDriver"===o.backendDriverType&&(e.apolloDataStore.checkResults[t._id]=u.getSnapshot(t))}return e}})}const ZP={0:2,1:1,2:0},XP={3:0,4:1,5:2};function QP(e,t){const o=e.getPlugin("LinearGenomeViewPlugin"),{BaseLinearDisplay:i}=o.exports;return i.named("SixFrameFeatureDisplay").props({type:u.types.literal("SixFrameFeatureDisplay"),configuration:r.ConfigurationReference(t),apolloRowHeight:20,detailsMinHeight:200,showStartCodons:!1,showStopCodons:!0,showIntronLines:!0}).volatile((()=>({apolloFeatureUnderMouse:void 0,apolloRowUnderMouse:void 0}))).views((e=>{const{configuration:t,renderProps:n}=e;return{renderProps:()=>({...n(),...k.getParentRenderProps(e),config:t.renderer})}})).views((e=>({get regions(){let t;try{({blockDefinitions:t}=e)}catch{return[]}return t.contentBlocks.map((({assemblyName:e,end:t,refName:n,start:r})=>({assemblyName:e,refName:n,start:r,end:t})))},regionCannotBeRendered(){const t=n.getContainingView(e);if(t&&t.bpPerPx>=200)return"Zoom in to see annotations"},get session(){return n.getSession(e)}}))).actions((e=>{let t=[];return{afterAttach(){u.addDisposer(e,s.autorun((()=>{const r=n.getSession(e);if(n.getContainingView(e).initialized){if(e.regionCannotBeRendered())return;const n=[],o=[];for(const r of e.blockDefinitions.contentBlocks)n.push(r.key),t.includes(r.key)||o.push(r);r.apolloDataStore.loadFeatures(o.map((({assemblyName:e,end:t,refName:n,start:r})=>({assemblyName:e,refName:n,start:r,end:t})))),r.apolloDataStore.loadRefSeq(o.map((({assemblyName:e,end:t,refName:n,start:r})=>({assemblyName:e,refName:n,start:r,end:t})))),t=n}}),{name:"SixFrameFeatureDisplay"}))}}})).views((e=>({get rendererTypeName(){return e.configuration.renderer.type},get changeManager(){return n.getSession(e).apolloDataStore.changeManager},get sequence(){const{regions:t}=e,r=n.getSession(e),o=new Map;for(const e of t){const t=r.apolloDataStore.assemblies.get(e.assemblyName),n=t?.getByRefName(e.refName),i=n?.getSequence(e.start,e.end);o.set(e.start,i??"")}return o},get features(){const{regions:t}=e,r=n.getSession(e),o=new Map;for(const e of t){const t=r.apolloDataStore.assemblies.get(e.assemblyName),n=t?.getByRefName(e.refName);let i=o.get(e.refName);i||(i=new Map,o.set(e.refName,i));for(const[t,r]of n?.features.entries()??new Map)e.start<r.end&&e.end>r.start&&i.set(t,r)}return o},get featuresMinMax(){const e={};for(const[t,n]of this.features||[]){let r,o;for(const[,e]of n)void 0===r&&({min:r}=e),void 0===o&&({max:o}=e),e.min<r&&({min:r}=e),e.max>o&&({max:o}=e);void 0!==r&&void 0!==o&&(e[t]=[r,o])}return e},get codonLayout(){const e=new Map;let t="",r=0;for(const[e,n]of this.sequence||[])n&&(t||(r=e),t+=n);for(let o=0;o<6;o++){const i=[],a=[],s=o in XP;let u,c,l;s?(u=(t.length+r)%3,c=(XP[o]+u+3)%3,l=n.reverse(t).slice(c)):(u=3-r%3,c=(ZP[o]+u+3)%3,l=t.slice(c));for(let e=0;e<l.length;e+=3){const t=l.slice(e,e+3),o=s?n.reverse(n.revcom(t)):t,u=s?r+l.length-(3+e):r+e+c;n.defaultStarts.includes(o.toUpperCase())?i.push(u):n.defaultStops.includes(o.toUpperCase())&&a.push(u)}e.set(o,{starts:i,stops:a})}return e},get featureLayout(){const e=new Map;for(const[t,n]of this.features||[]){if(!n)continue;const r=this.featuresMinMax[t];if(!r)continue;const[o,i]=r,a=[],s=6;for(let t=0;t<s;t++){const t=a.length;a[t]=Array.from({length:i-o}),e.set(t,[])}for(const t of[...n.values()].sort(((e,t)=>{const{max:n,min:r}=e,{max:o,min:i}=t;return r-i||n-o})))for(const[,n]of t.children??new Map)if("mRNA"===n.type)for(const[,r]of n.children||new Map){let o;if("CDS"===r.type){let i;r.discontinuousLocations.length>0?({discontinuousLocations:i}=r):i=[r];for(const r of i){const i=r.start+3,a=r.end-3;for(const[s,{stops:u}]of this.codonLayout)if(s<3&&1===t.strand||s>=3&&-1===t.strand){const t=u.filter((e=>e>=i&&e<=a));if(0===t.length){o=s;const t=e.get(o);t?.push([n.featureId,r]);break}}}}}}return e},getAssemblyId(t){const{assemblyManager:r}=n.getSession(e),o=r.get(t);if(!o)throw new Error(`Could not find assembly named ${t}`);return o.name},get selectedFeature(){return n.getSession(e).apolloSelectedFeature},get setSelectedFeature(){return 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n,r,o=e.max_chain_length,i=e.strstart,a=e.prev_length,s=e.nice_match,u=e.strstart>e.w_size-ni?e.strstart-(e.w_size-ni):0,c=e.window,l=e.w_mask,f=e.prev,d=e.strstart+ti,h=c[i+a-1],p=c[i+a];e.prev_length>=e.good_match&&(o>>=2),s>e.lookahead&&(s=e.lookahead);do{if(c[(n=t)+a]===p&&c[n+a-1]===h&&c[n]===c[i]&&c[++n]===c[i+1]){i+=2,n++;do{}while(c[++i]===c[++n]&&c[++i]===c[++n]&&c[++i]===c[++n]&&c[++i]===c[++n]&&c[++i]===c[++n]&&c[++i]===c[++n]&&c[++i]===c[++n]&&c[++i]===c[++n]&&i<d);if(r=ti-(d-i),i=d-ti,r>a){if(e.match_start=t,a=r,r>=s)break;h=c[i+a-1],p=c[i+a]}}}while((t=f[t&l])>u&&0!=--o);return a<=e.lookahead?a:e.lookahead}function mi(e){var t,n,r,o,i,a,s,u,c,l,f=e.w_size;do{if(o=e.window_size-e.lookahead-e.strstart,e.strstart>=f+(f-ni)){qo.arraySet(e.window,e.window,f,f,0),e.match_start-=f,e.strstart-=f,e.block_start-=f,t=n=e.hash_size;do{r=e.head[--t],e.head[t]=r>=f?r-f:0}while(--n);t=n=f;do{r=e.prev[--t],e.prev[t]=r>=f?r-f:0}while(--n);o+=f}if(0===e.strm.avail_in)break;if(s=e.window,u=e.strstart+e.lookahead,l=void 0,(l=(a=e.strm).avail_in)>(c=o)&&(l=c),n=0===l?0:(a.avail_in-=l,qo.arraySet(s,a.input,a.next_in,l,u),1===a.state.wrap?a.adler=Uo(a.adler,s,l,u):2===a.state.wrap&&(a.adler=zo(a.adler,s,l,u)),a.next_in+=l,a.total_in+=l,l),e.lookahead+=n,e.lookahead+e.insert>=ei)for(e.ins_h=e.window[i=e.strstart-e.insert],e.ins_h=(e.ins_h<<e.hash_shift^e.window[i+1])&e.hash_mask;e.insert&&(e.ins_h=(e.ins_h<<e.hash_shift^e.window[i+ei-1])&e.hash_mask,e.prev[i&e.w_mask]=e.head[e.ins_h],e.head[e.ins_h]=i,i++,e.insert--,!(e.lookahead+e.insert<ei)););}while(e.lookahead<ni&&0!==e.strm.avail_in)}function gi(e,t){var n=65535;for(n>e.pending_buf_size-5&&(n=e.pending_buf_size-5);;){if(e.lookahead<=1){if(mi(e),0===e.lookahead&&t===Ho)return 1;if(0===e.lookahead)break}e.strstart+=e.lookahead,e.lookahead=0;var r=e.block_start+n;if((0===e.strstart||e.strstart>=r)&&(e.lookahead=e.strstart-r,e.strstart=r,fi(e,!1),0===e.strm.avail_out))return 1;if(e.strstart-e.block_start>=e.w_size-ni&&(fi(e,!1),0===e.strm.avail_out))return 1}return e.insert=0,4===t?(fi(e,!0),0===e.strm.avail_out?3:4):(e.strstart>e.block_start&&fi(e,!1),1)}function yi(e,t){for(var n,r;;){if(e.lookahead<ni){if(mi(e),e.lookahead<ni&&t===Ho)return 1;if(0===e.lookahead)break}if(n=0,e.lookahead>=ei&&(e.ins_h=(e.ins_h<<e.hash_shift^e.window[e.strstart+ei-1])&e.hash_mask,n=e.prev[e.strstart&e.w_mask]=e.head[e.ins_h],e.head[e.ins_h]=e.strstart),0!==n&&e.strstart-n<=e.w_size-ni&&(e.match_length=pi(e,n)),e.match_length>=ei)if(r=Bo._tr_tally(e,e.strstart-e.match_start,e.match_length-ei),e.lookahead-=e.match_length,e.match_length<=e.max_lazy_match&&e.lookahead>=ei){e.match_length--;do{e.strstart++,e.ins_h=(e.ins_h<<e.hash_shift^e.window[e.strstart+ei-1])&e.hash_mask,n=e.prev[e.strstart&e.w_mask]=e.head[e.ins_h],e.head[e.ins_h]=e.strstart}while(0!=--e.match_length);e.strstart++}else e.strstart+=e.match_length,e.match_length=0,e.ins_h=e.window[e.strstart],e.ins_h=(e.ins_h<<e.hash_shift^e.window[e.strstart+1])&e.hash_mask;else r=Bo._tr_tally(e,0,e.window[e.strstart]),e.lookahead--,e.strstart++;if(r&&(fi(e,!1),0===e.strm.avail_out))return 1}return e.insert=e.strstart<ei-1?e.strstart:ei-1,4===t?(fi(e,!0),0===e.strm.avail_out?3:4):e.last_lit&&(fi(e,!1),0===e.strm.avail_out)?1:2}function vi(e,t){for(var n,r,o;;){if(e.lookahead<ni){if(mi(e),e.lookahead<ni&&t===Ho)return 1;if(0===e.lookahead)break}if(n=0,e.lookahead>=ei&&(e.ins_h=(e.ins_h<<e.hash_shift^e.window[e.strstart+ei-1])&e.hash_mask,n=e.prev[e.strstart&e.w_mask]=e.head[e.ins_h],e.head[e.ins_h]=e.strstart),e.prev_length=e.match_length,e.prev_match=e.match_start,e.match_length=ei-1,0!==n&&e.prev_length<e.max_lazy_match&&e.strstart-n<=e.w_size-ni&&(e.match_length=pi(e,n),e.match_length<=5&&(1===e.strategy||e.match_length===ei&&e.strstart-e.match_start>4096)&&(e.match_length=ei-1)),e.prev_length>=ei&&e.match_length<=e.prev_length){o=e.strstart+e.lookahead-ei,r=Bo._tr_tally(e,e.strstart-1-e.prev_match,e.prev_length-ei),e.lookahead-=e.prev_length-1,e.prev_length-=2;do{++e.strstart<=o&&(e.ins_h=(e.ins_h<<e.hash_shift^e.window[e.strstart+ei-1])&e.hash_mask,n=e.prev[e.strstart&e.w_mask]=e.head[e.ins_h],e.head[e.ins_h]=e.strstart)}while(0!=--e.prev_length);if(e.match_available=0,e.match_length=ei-1,e.strstart++,r&&(fi(e,!1),0===e.strm.avail_out))return 1}else if(e.match_available){if((r=Bo._tr_tally(e,0,e.window[e.strstart-1]))&&fi(e,!1),e.strstart++,e.lookahead--,0===e.strm.avail_out)return 1}else e.match_available=1,e.strstart++,e.lookahead--}return e.match_available&&(r=Bo._tr_tally(e,0,e.window[e.strstart-1]),e.match_available=0),e.insert=e.strstart<ei-1?e.strstart:ei-1,4===t?(fi(e,!0),0===e.strm.avail_out?3:4):e.last_lit&&(fi(e,!1),0===e.strm.avail_out)?1:2}function _i(e,t,n,r,o){this.good_length=e,this.max_lazy=t,this.nice_length=n,this.max_chain=r,this.func=o}function bi(){this.strm=null,this.status=0,this.pending_buf=null,this.pending_buf_size=0,this.pending_out=0,this.pending=0,this.wrap=0,this.gzhead=null,this.gzindex=0,this.method=Jo,this.last_flush=-1,this.w_size=0,this.w_bits=0,this.w_mask=0,this.window=null,this.window_size=0,this.prev=null,this.head=null,this.ins_h=0,this.hash_size=0,this.hash_bits=0,this.hash_mask=0,this.hash_shift=0,this.block_start=0,this.match_length=0,this.prev_match=0,this.match_available=0,this.strstart=0,this.match_start=0,this.lookahead=0,this.prev_length=0,this.max_chain_length=0,this.max_lazy_match=0,this.level=0,this.strategy=0,this.good_match=0,this.nice_match=0,this.dyn_ltree=new qo.Buf16(2*Xo),this.dyn_dtree=new qo.Buf16(2*(2*Yo+1)),this.bl_tree=new qo.Buf16(2*(2*Zo+1)),ci(this.dyn_ltree),ci(this.dyn_dtree),ci(this.bl_tree),this.l_desc=null,this.d_desc=null,this.bl_desc=null,this.bl_count=new qo.Buf16(Qo+1),this.heap=new qo.Buf16(2*Ko+1),ci(this.heap),this.heap_len=0,this.heap_max=0,this.depth=new qo.Buf16(2*Ko+1),ci(this.depth),this.l_buf=0,this.lit_bufsize=0,this.last_lit=0,this.d_buf=0,this.opt_len=0,this.static_len=0,this.matches=0,this.insert=0,this.bi_buf=0,this.bi_valid=0}function wi(e){var t;return e&&e.state?(e.total_in=e.total_out=0,e.data_type=$o,(t=e.state).pending=0,t.pending_out=0,t.wrap<0&&(t.wrap=-t.wrap),t.status=t.wrap?ri:ii,e.adler=2===t.wrap?0:1,t.last_flush=Ho,Bo._tr_init(t),Wo):si(e,Vo)}function Si(e){var t,n=wi(e);return n===Wo&&((t=e.state).window_size=2*t.w_size,ci(t.head),t.max_lazy_match=jo[t.level].max_lazy,t.good_match=jo[t.level].good_length,t.nice_match=jo[t.level].nice_length,t.max_chain_length=jo[t.level].max_chain,t.strstart=0,t.block_start=0,t.lookahead=0,t.insert=0,t.match_length=t.prev_length=ei-1,t.match_available=0,t.ins_h=0),n}function xi(e,t,n,r,o,i){if(!e)return Vo;var a=1;if(-1===t&&(t=6),r<0?(a=0,r=-r):r>15&&(a=2,r-=16),o<1||o>9||n!==Jo||r<8||r>15||t<0||t>9||i<0||i>4)return si(e,Vo);8===r&&(r=9);var s=new bi;return e.state=s,s.strm=e,s.wrap=a,s.gzhead=null,s.w_bits=r,s.w_size=1<<s.w_bits,s.w_mask=s.w_size-1,s.hash_bits=o+7,s.hash_size=1<<s.hash_bits,s.hash_mask=s.hash_size-1,s.hash_shift=~~((s.hash_bits+ei-1)/ei),s.window=new qo.Buf8(2*s.w_size),s.head=new qo.Buf16(s.hash_size),s.prev=new qo.Buf16(s.w_size),s.lit_bufsize=1<<o+6,s.pending_buf_size=4*s.lit_bufsize,s.pending_buf=new qo.Buf8(s.pending_buf_size),s.d_buf=1*s.lit_bufsize,s.l_buf=3*s.lit_bufsize,s.level=t,s.strategy=i,s.method=n,Si(e)}jo=[new _i(0,0,0,0,gi),new _i(4,4,8,4,yi),new _i(4,5,16,8,yi),new _i(4,6,32,32,yi),new _i(4,4,16,16,vi),new _i(8,16,32,32,vi),new _i(8,16,128,128,vi),new _i(8,32,128,256,vi),new _i(32,128,258,1024,vi),new _i(32,258,258,4096,vi)],Kr.deflateInit=function(e,t){return xi(e,t,Jo,15,8,0)},Kr.deflateInit2=xi,Kr.deflateReset=Si,Kr.deflateResetKeep=wi,Kr.deflateSetHeader=function(e,t){return e&&e.state?2!==e.state.wrap?Vo:(e.state.gzhead=t,Wo):Vo},Kr.deflate=function(e,t){var n,r,o,i;if(!e||!e.state||t>5||t<0)return e?si(e,Vo):Vo;if(r=e.state,!e.output||!e.input&&0!==e.avail_in||r.status===ai&&4!==t)return si(e,0===e.avail_out?-5:Vo);if(r.strm=e,n=r.last_flush,r.last_flush=t,r.status===ri)if(2===r.wrap)e.adler=0,di(r,31),di(r,139),di(r,8),r.gzhead?(di(r,(r.gzhead.text?1:0)+(r.gzhead.hcrc?2:0)+(r.gzhead.extra?4:0)+(r.gzhead.name?8:0)+(r.gzhead.comment?16:0)),di(r,255&r.gzhead.time),di(r,r.gzhead.time>>8&255),di(r,r.gzhead.time>>16&255),di(r,r.gzhead.time>>24&255),di(r,9===r.level?2:r.strategy>=2||r.level<2?4:0),di(r,255&r.gzhead.os),r.gzhead.extra&&r.gzhead.extra.length&&(di(r,255&r.gzhead.extra.length),di(r,r.gzhead.extra.length>>8&255)),r.gzhead.hcrc&&(e.adler=zo(e.adler,r.pending_buf,r.pending,0)),r.gzindex=0,r.status=69):(di(r,0),di(r,0),di(r,0),di(r,0),di(r,0),di(r,9===r.level?2:r.strategy>=2||r.level<2?4:0),di(r,3),r.status=ii);else{var a=Jo+(r.w_bits-8<<4)<<8;a|=(r.strategy>=2||r.level<2?0:r.level<6?1:6===r.level?2:3)<<6,0!==r.strstart&&(a|=32),a+=31-a%31,r.status=ii,hi(r,a),0!==r.strstart&&(hi(r,e.adler>>>16),hi(r,65535&e.adler)),e.adler=1}if(69===r.status)if(r.gzhead.extra){for(o=r.pending;r.gzindex<(65535&r.gzhead.extra.length)&&(r.pending!==r.pending_buf_size||(r.gzhead.hcrc&&r.pending>o&&(e.adler=zo(e.adler,r.pending_buf,r.pending-o,o)),li(e),o=r.pending,r.pending!==r.pending_buf_size));)di(r,255&r.gzhead.extra[r.gzindex]),r.gzindex++;r.gzhead.hcrc&&r.pending>o&&(e.adler=zo(e.adler,r.pending_buf,r.pending-o,o)),r.gzindex===r.gzhead.extra.length&&(r.gzindex=0,r.status=73)}else r.status=73;if(73===r.status)if(r.gzhead.name){o=r.pending;do{if(r.pending===r.pending_buf_size&&(r.gzhead.hcrc&&r.pending>o&&(e.adler=zo(e.adler,r.pending_buf,r.pending-o,o)),li(e),o=r.pending,r.pending===r.pending_buf_size)){i=1;break}i=r.gzindex<r.gzhead.name.length?255&r.gzhead.name.charCodeAt(r.gzindex++):0,di(r,i)}while(0!==i);r.gzhead.hcrc&&r.pending>o&&(e.adler=zo(e.adler,r.pending_buf,r.pending-o,o)),0===i&&(r.gzindex=0,r.status=91)}else r.status=91;if(91===r.status)if(r.gzhead.comment){o=r.pending;do{if(r.pending===r.pending_buf_size&&(r.gzhead.hcrc&&r.pending>o&&(e.adler=zo(e.adler,r.pending_buf,r.pending-o,o)),li(e),o=r.pending,r.pending===r.pending_buf_size)){i=1;break}i=r.gzindex<r.gzhead.comment.length?255&r.gzhead.comment.charCodeAt(r.gzindex++):0,di(r,i)}while(0!==i);r.gzhead.hcrc&&r.pending>o&&(e.adler=zo(e.adler,r.pending_buf,r.pending-o,o)),0===i&&(r.status=oi)}else r.status=oi;if(r.status===oi&&(r.gzhead.hcrc?(r.pending+2>r.pending_buf_size&&li(e),r.pending+2<=r.pending_buf_size&&(di(r,255&e.adler),di(r,e.adler>>8&255),e.adler=0,r.status=ii)):r.status=ii),0!==r.pending){if(li(e),0===e.avail_out)return r.last_flush=-1,Wo}else if(0===e.avail_in&&ui(t)<=ui(n)&&4!==t)return si(e,-5);if(r.status===ai&&0!==e.avail_in)return si(e,-5);if(0!==e.avail_in||0!==r.lookahead||t!==Ho&&r.status!==ai){var s=2===r.strategy?function(e,t){for(var n;;){if(0===e.lookahead&&(mi(e),0===e.lookahead)){if(t===Ho)return 1;break}if(e.match_length=0,n=Bo._tr_tally(e,0,e.window[e.strstart]),e.lookahead--,e.strstart++,n&&(fi(e,!1),0===e.strm.avail_out))return 1}return e.insert=0,4===t?(fi(e,!0),0===e.strm.avail_out?3:4):e.last_lit&&(fi(e,!1),0===e.strm.avail_out)?1:2}(r,t):3===r.strategy?function(e,t){for(var n,r,o,i,a=e.window;;){if(e.lookahead<=ti){if(mi(e),e.lookahead<=ti&&t===Ho)return 1;if(0===e.lookahead)break}if(e.match_length=0,e.lookahead>=ei&&e.strstart>0&&(r=a[o=e.strstart-1])===a[++o]&&r===a[++o]&&r===a[++o]){i=e.strstart+ti;do{}while(r===a[++o]&&r===a[++o]&&r===a[++o]&&r===a[++o]&&r===a[++o]&&r===a[++o]&&r===a[++o]&&r===a[++o]&&o<i);e.match_length=ti-(i-o),e.match_length>e.lookahead&&(e.match_length=e.lookahead)}if(e.match_length>=ei?(n=Bo._tr_tally(e,1,e.match_length-ei),e.lookahead-=e.match_length,e.strstart+=e.match_length,e.match_length=0):(n=Bo._tr_tally(e,0,e.window[e.strstart]),e.lookahead--,e.strstart++),n&&(fi(e,!1),0===e.strm.avail_out))return 1}return e.insert=0,4===t?(fi(e,!0),0===e.strm.avail_out?3:4):e.last_lit&&(fi(e,!1),0===e.strm.avail_out)?1:2}(r,t):jo[r.level].func(r,t);if(3!==s&&4!==s||(r.status=ai),1===s||3===s)return 0===e.avail_out&&(r.last_flush=-1),Wo;if(2===s&&(1===t?Bo._tr_align(r):5!==t&&(Bo._tr_stored_block(r,0,0,!1),3===t&&(ci(r.head),0===r.lookahead&&(r.strstart=0,r.block_start=0,r.insert=0))),li(e),0===e.avail_out))return r.last_flush=-1,Wo}return 4!==t?Wo:r.wrap<=0?1:(2===r.wrap?(di(r,255&e.adler),di(r,e.adler>>8&255),di(r,e.adler>>16&255),di(r,e.adler>>24&255),di(r,255&e.total_in),di(r,e.total_in>>8&255),di(r,e.total_in>>16&255),di(r,e.total_in>>24&255)):(hi(r,e.adler>>>16),hi(r,65535&e.adler)),li(e),r.wrap>0&&(r.wrap=-r.wrap),0!==r.pending?Wo:1)},Kr.deflateEnd=function(e){var t;return e&&e.state?(t=e.state.status)!==ri&&69!==t&&73!==t&&91!==t&&t!==oi&&t!==ii&&t!==ai?si(e,Vo):(e.state=null,t===ii?si(e,-3):Wo):Vo},Kr.deflateSetDictionary=function(e,t){var n,r,o,i,a,s,u,c,l=t.length;if(!e||!e.state)return Vo;if(2===(i=(n=e.state).wrap)||1===i&&n.status!==ri||n.lookahead)return Vo;for(1===i&&(e.adler=Uo(e.adler,t,l,0)),n.wrap=0,l>=n.w_size&&(0===i&&(ci(n.head),n.strstart=0,n.block_start=0,n.insert=0),c=new qo.Buf8(n.w_size),qo.arraySet(c,t,l-n.w_size,n.w_size,0),t=c,l=n.w_size),a=e.avail_in,s=e.next_in,u=e.input,e.avail_in=l,e.next_in=0,e.input=t,mi(n);n.lookahead>=ei;){r=n.strstart,o=n.lookahead-(ei-1);do{n.ins_h=(n.ins_h<<n.hash_shift^n.window[r+ei-1])&n.hash_mask,n.prev[r&n.w_mask]=n.head[n.ins_h],n.head[n.ins_h]=r,r++}while(--o);n.strstart=r,n.lookahead=ei-1,mi(n)}return n.strstart+=n.lookahead,n.block_start=n.strstart,n.insert=n.lookahead,n.lookahead=0,n.match_length=n.prev_length=ei-1,n.match_available=0,e.next_in=s,e.input=u,e.avail_in=a,n.wrap=i,Wo},Kr.deflateInfo="pako deflate (from Nodeca project)";var ki={},Ei=$r,Ai=!0,Ci=!0;try{String.fromCharCode.apply(null,[0])}catch(e){Ai=!1}try{String.fromCharCode.apply(null,new Uint8Array(1))}catch(e){Ci=!1}for(var Oi=new Ei.Buf8(256),Ri=0;Ri<256;Ri++)Oi[Ri]=Ri>=252?6:Ri>=248?5:Ri>=240?4:Ri>=224?3:Ri>=192?2:1;function Ni(e,t){if(t<65534&&(e.subarray&&Ci||!e.subarray&&Ai))return String.fromCharCode.apply(null,Ei.shrinkBuf(e,t));for(var n="",r=0;r<t;r++)n+=String.fromCharCode(e[r]);return n}Oi[254]=Oi[254]=1,ki.string2buf=function(e){var t,n,r,o,i,a=e.length,s=0;for(o=0;o<a;o++)55296==(64512&(n=e.charCodeAt(o)))&&o+1<a&&56320==(64512&(r=e.charCodeAt(o+1)))&&(n=65536+(n-55296<<10)+(r-56320),o++),s+=n<128?1:n<2048?2:n<65536?3:4;for(t=new Ei.Buf8(s),i=0,o=0;i<s;o++)55296==(64512&(n=e.charCodeAt(o)))&&o+1<a&&56320==(64512&(r=e.charCodeAt(o+1)))&&(n=65536+(n-55296<<10)+(r-56320),o++),n<128?t[i++]=n:n<2048?(t[i++]=192|n>>>6,t[i++]=128|63&n):n<65536?(t[i++]=224|n>>>12,t[i++]=128|n>>>6&63,t[i++]=128|63&n):(t[i++]=240|n>>>18,t[i++]=128|n>>>12&63,t[i++]=128|n>>>6&63,t[i++]=128|63&n);return t},ki.buf2binstring=function(e){return Ni(e,e.length)},ki.binstring2buf=function(e){for(var t=new Ei.Buf8(e.length),n=0,r=t.length;n<r;n++)t[n]=e.charCodeAt(n);return t},ki.buf2string=function(e,t){var n,r,o,i,a=t||e.length,s=new Array(2*a);for(r=0,n=0;n<a;)if((o=e[n++])<128)s[r++]=o;else 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Fi,this.strm.avail_out=0;var n=Pi.deflateInit2(this.strm,t.level,t.method,t.windowBits,t.memLevel,t.strategy);if(n!==Di)throw new Error(ji[n]);if(t.header&&Pi.deflateSetHeader(this.strm,t.header),t.dictionary){var r;if(r="string"==typeof t.dictionary?Mi.string2buf(t.dictionary):"[object ArrayBuffer]"===Li.call(t.dictionary)?new Uint8Array(t.dictionary):t.dictionary,(n=Pi.deflateSetDictionary(this.strm,r))!==Di)throw new Error(ji[n]);this._dict_set=!0}}function Gi(e,t){var n=new zi(t);if(n.push(e,!0),n.err)throw n.msg||ji[n.err];return n.result}zi.prototype.push=function(e,t){var n,r,o=this.strm,i=this.options.chunkSize;if(this.ended)return!1;r=t===~~t?t:!0===t?4:0,o.input="string"==typeof e?Mi.string2buf(e):"[object ArrayBuffer]"===Li.call(e)?new Uint8Array(e):e,o.next_in=0,o.avail_in=o.input.length;do{if(0===o.avail_out&&(o.output=new Ti.Buf8(i),o.next_out=0,o.avail_out=i),1!==(n=Pi.deflate(o,r))&&n!==Di)return this.onEnd(n),this.ended=!0,!1;0!==o.avail_out&&(0!==o.avail_in||4!==r&&2!==r)||this.onData("string"===this.options.to?Mi.buf2binstring(Ti.shrinkBuf(o.output,o.next_out)):Ti.shrinkBuf(o.output,o.next_out))}while((o.avail_in>0||0===o.avail_out)&&1!==n);return 4===r?(n=Pi.deflateEnd(this.strm),this.onEnd(n),this.ended=!0,n===Di):2!==r||(this.onEnd(Di),o.avail_out=0,!0)},zi.prototype.onData=function(e){this.chunks.push(e)},zi.prototype.onEnd=function(e){e===Di&&(this.result="string"===this.options.to?this.chunks.join(""):Ti.flattenChunks(this.chunks)),this.chunks=[],this.err=e,this.msg=this.strm.msg},Jr.Deflate=zi,Jr.deflate=Gi,Jr.deflateRaw=function(e,t){return(t=t||{}).raw=!0,Gi(e,t)},Jr.gzip=function(e,t){return(t=t||{}).gzip=!0,Gi(e,t)};var Hi={},Wi={},Vi=$r,$i=[3,4,5,6,7,8,9,10,11,13,15,17,19,23,27,31,35,43,51,59,67,83,99,115,131,163,195,227,258,0,0],Ji=[16,16,16,16,16,16,16,16,17,17,17,17,18,18,18,18,19,19,19,19,20,20,20,20,21,21,21,21,16,72,78],Ki=[1,2,3,4,5,7,9,13,17,25,33,49,65,97,129,193,257,385,513,769,1025,1537,2049,3073,4097,6145,8193,12289,16385,24577,0,0],Yi=[16,16,16,16,17,17,18,18,19,19,20,20,21,21,22,22,23,23,24,24,25,25,26,26,27,27,28,28,29,29,64,64],Zi=$r,Xi=To,Qi=Lo,ea=function(e,t){var n,r,o,i,a,s,u,c,l,f,d,h,p,m,g,y,v,_,b,w,S,x,k,E,A;E=e.input,o=(r=e.next_in)+(e.avail_in-5),A=e.output,a=(i=e.next_out)-(t-e.avail_out),s=i+(e.avail_out-257),u=(n=e.state).dmax,c=n.wsize,l=n.whave,f=n.wnext,d=n.window,h=n.hold,p=n.bits,m=n.lencode,g=n.distcode,y=(1<<n.lenbits)-1,v=(1<<n.distbits)-1;e:do{p<15&&(h+=E[r++]<<p,h+=E[r++]<<(p+=8),p+=8),_=m[h&y];t:for(;;){if(h>>>=b=_>>>24,p-=b,0==(b=_>>>16&255))A[i++]=65535&_;else{if(!(16&b)){if(0==(64&b)){_=m[(65535&_)+(h&(1<<b)-1)];continue t}if(32&b){n.mode=12;break 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e&&e.state?(t<0?(n=0,t=-t):(n=1+(t>>4),t<48&&(t&=15)),t&&(t<8||t>15)?ra:(null!==(r=e.state).window&&r.wbits!==t&&(r.window=null),r.wrap=n,r.wbits=t,da(e))):ra}function pa(e,t){var n,r;return e?(r=new la,e.state=r,r.window=null,(n=ha(e,t))!==na&&(e.state=null),n):ra}var ma,ga,ya=!0;function va(e){if(ya){var t;for(ma=new Zi.Buf32(512),ga=new Zi.Buf32(32),t=0;t<144;)e.lens[t++]=8;for(;t<256;)e.lens[t++]=9;for(;t<280;)e.lens[t++]=7;for(;t<288;)e.lens[t++]=8;for(ta(1,e.lens,0,288,ma,0,e.work,{bits:9}),t=0;t<32;)e.lens[t++]=5;ta(2,e.lens,0,32,ga,0,e.work,{bits:5}),ya=!1}e.lencode=ma,e.lenbits=9,e.distcode=ga,e.distbits=5}function _a(e,t,n,r){var o,i=e.state;return null===i.window&&(i.wsize=1<<i.wbits,i.wnext=0,i.whave=0,i.window=new Zi.Buf8(i.wsize)),r>=i.wsize?(Zi.arraySet(i.window,t,n-i.wsize,i.wsize,0),i.wnext=0,i.whave=i.wsize):((o=i.wsize-i.wnext)>r&&(o=r),Zi.arraySet(i.window,t,n-r,o,i.wnext),(r-=o)?(Zi.arraySet(i.window,t,n-r,r,0),i.wnext=r,i.whave=i.wsize):(i.wnext+=o,i.wnext===i.wsize&&(i.wnext=0),i.whave<i.wsize&&(i.whave+=o))),0}Wi.inflateReset=da,Wi.inflateReset2=ha,Wi.inflateResetKeep=fa,Wi.inflateInit=function(e){return pa(e,15)},Wi.inflateInit2=pa,Wi.inflate=function(e,t){var n,r,o,i,a,s,u,c,l,f,d,h,p,m,g,y,v,_,b,w,S,x,k,E,A=0,C=new Zi.Buf8(4),O=[16,17,18,0,8,7,9,6,10,5,11,4,12,3,13,2,14,1,15];if(!e||!e.state||!e.output||!e.input&&0!==e.avail_in)return ra;(n=e.state).mode===ia&&(n.mode=13),a=e.next_out,o=e.output,i=e.next_in,r=e.input,c=n.hold,l=n.bits,f=s=e.avail_in,d=u=e.avail_out,x=na;e:for(;;)switch(n.mode){case oa:if(0===n.wrap){n.mode=13;break}for(;l<16;){if(0===s)break 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t&&!n?-1:!t&&n?1:this.unsigned?e.high>>>0>this.high>>>0||e.high===this.high&&e.low>>>0>this.low>>>0?-1:1:this.sub(e).isNegative()?-1:1},is.comp=is.compare,is.negate=function(){return!this.unsigned&&this.eq(os)?os:this.not().add(Qa)},is.neg=is.negate,is.add=function(e){La(e)||(e=Va(e));var t=0,n=0,r=0,o=0;return r+=(o+=(65535&this.low)+(65535&e.low))>>>16,n+=(r+=(this.low>>>16)+(e.low>>>16))>>>16,t+=(n+=(65535&this.high)+(65535&e.high))>>>16,t+=(this.high>>>16)+(e.high>>>16),Ga((r&=65535)<<16|(o&=65535),(t&=65535)<<16|(n&=65535),this.unsigned)},is.subtract=function(e){return La(e)||(e=Va(e)),this.add(e.neg())},is.sub=is.subtract,is.multiply=function(e){if(this.isZero())return this;if(La(e)||(e=Va(e)),ja)return Ga(ja.mul(this.low,this.high,e.low,e.high),ja.get_high(),this.unsigned);if(e.isZero())return this.unsigned?Xa:Za;if(this.eq(os))return e.isOdd()?os:Za;if(e.eq(os))return this.isOdd()?os:Za;if(this.isNegative())return e.isNegative()?this.neg().mul(e.neg()):this.neg().mul(e).neg();if(e.isNegative())return this.mul(e.neg()).neg();if(this.lt(Ya)&&e.lt(Ya))return za(this.toNumber()*e.toNumber(),this.unsigned);var t=65535&this.high,n=this.low>>>16,r=65535&this.low,o=65535&e.high,i=e.low>>>16,a=65535&e.low,s=0,u=0,c=0,l=0;return c+=(l+=r*a)>>>16,u+=(c+=n*a)>>>16,c&=65535,u+=(c+=r*i)>>>16,s+=(u+=t*a)>>>16,u&=65535,s+=(u+=n*i)>>>16,u&=65535,s+=(u+=r*o)>>>16,s+=(this.high>>>16)*a+t*i+n*o+r*(e.high>>>16),Ga((c&=65535)<<16|(l&=65535),(s&=65535)<<16|(u&=65535),this.unsigned)},is.mul=is.multiply,is.divide=function(e){if(La(e)||(e=Va(e)),e.isZero())throw Error("division by zero");var t,n,r;if(ja)return this.unsigned||-2147483648!==this.high||-1!==e.low||-1!==e.high?Ga((this.unsigned?ja.div_u:ja.div_s)(this.low,this.high,e.low,e.high),ja.get_high(),this.unsigned):this;if(this.isZero())return this.unsigned?Xa:Za;if(this.unsigned){if(e.unsigned||(e=e.toUnsigned()),e.gt(this))return Xa;if(e.gt(this.shru(1)))return 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this.high?Math.clz32(this.high):Math.clz32(this.low)+32},is.clz=is.countLeadingZeros,is.countTrailingZeros=function(){return this.low?Da(this.low):Da(this.high)+32},is.ctz=is.countTrailingZeros,is.and=function(e){return La(e)||(e=Va(e)),Ga(this.low&e.low,this.high&e.high,this.unsigned)},is.or=function(e){return La(e)||(e=Va(e)),Ga(this.low|e.low,this.high|e.high,this.unsigned)},is.xor=function(e){return La(e)||(e=Va(e)),Ga(this.low^e.low,this.high^e.high,this.unsigned)},is.shiftLeft=function(e){return La(e)&&(e=e.toInt()),0==(e&=63)?this:e<32?Ga(this.low<<e,this.high<<e|this.low>>>32-e,this.unsigned):Ga(0,this.low<<e-32,this.unsigned)},is.shl=is.shiftLeft,is.shiftRight=function(e){return La(e)&&(e=e.toInt()),0==(e&=63)?this:e<32?Ga(this.low>>>e|this.high<<32-e,this.high>>e,this.unsigned):Ga(this.high>>e-32,this.high>=0?0:-1,this.unsigned)},is.shr=is.shiftRight,is.shiftRightUnsigned=function(e){return La(e)&&(e=e.toInt()),0==(e&=63)?this:e<32?Ga(this.low>>>e|this.high<<32-e,this.high>>>e,this.unsigned):Ga(32===e?this.high:this.high>>>e-32,0,this.unsigned)},is.shru=is.shiftRightUnsigned,is.shr_u=is.shiftRightUnsigned,is.rotateLeft=function(e){var t;return La(e)&&(e=e.toInt()),0==(e&=63)?this:32===e?Ga(this.high,this.low,this.unsigned):e<32?Ga(this.low<<e|this.high>>>(t=32-e),this.high<<e|this.low>>>t,this.unsigned):Ga(this.high<<(e-=32)|this.low>>>(t=32-e),this.low<<e|this.high>>>t,this.unsigned)},is.rotl=is.rotateLeft,is.rotateRight=function(e){var t;return La(e)&&(e=e.toInt()),0==(e&=63)?this:32===e?Ga(this.high,this.low,this.unsigned):e<32?Ga(this.high<<(t=32-e)|this.low>>>e,this.low<<t|this.high>>>e,this.unsigned):Ga(this.low<<(t=32-(e-=32))|this.high>>>e,this.high<<t|this.low>>>e,this.unsigned)},is.rotr=is.rotateRight,is.toSigned=function(){return this.unsigned?Ga(this.low,this.high,!1):this},is.toUnsigned=function(){return 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n=t.fasta,r=t.fai,o=t.path,i=t.faiPath;if(ee(this,e),n)this.fasta=n;else{if(!o)throw new Error("Need to pass filehandle for fasta or path to localfile");this.fasta=new Br(o)}if(r)this.fai=r;else if(i)this.fai=new Br(i);else{if(!o)throw new Error("Need to pass filehandle for  or path to localfile");this.fai=new Br("".concat(o,".fai"))}}var t,n,r,o,i,a,s,u,c;return ne(e,[{key:"_getIndexes",value:(c=Q(Y().mark((function e(t){return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return this.indexes||(this.indexes=cs(this.fai,t)),e.abrupt("return",this.indexes);case 2:case"end":return e.stop()}}),e,this)}))),function(e){return c.apply(this,arguments)})},{key:"getSequenceNames",value:(u=Q(Y().mark((function e(t){return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return e.t0=Object,e.next=3,this._getIndexes(t);case 3:return e.t1=e.sent.name,e.abrupt("return",e.t0.keys.call(e.t0,e.t1));case 5:case"end":return e.stop()}}),e,this)}))),function(e){return u.apply(this,arguments)})},{key:"getSequenceSizes",value:(s=Q(Y().mark((function e(t){var n,r,o;return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return n={},e.next=3,this._getIndexes(t);case 3:for(r=Object.values(e.sent.id),o=0;o<r.length;o+=1)n[r[o].name]=r[o].length;return e.abrupt("return",n);case 7:case"end":return e.stop()}}),e,this)}))),function(e){return s.apply(this,arguments)})},{key:"getSequenceSize",value:(a=Q(Y().mark((function e(t,n){var r;return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return e.next=2,this._getIndexes(n);case 2:return e.abrupt("return",null===(r=e.sent.name[t])||void 0===r?void 0:r.length);case 4:case"end":return e.stop()}}),e,this)}))),function(e,t){return a.apply(this,arguments)})},{key:"hasReferenceSequence",value:(i=Q(Y().mark((function e(t,n){return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return e.next=2,this._getIndexes(n);case 2:return e.t0=t,e.abrupt("return",!!e.sent.name[e.t0]);case 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r,o=e.fasta,i=e.path,a=e.fai,s=e.faiPath,u=e.gzi,c=e.gziPath;return ee(this,n),r=t.call(this,{fasta:o,path:i,fai:a,faiPath:s}),o&&u?r.fasta=new ss({filehandle:o,gziFilehandle:u}):i&&c&&(r.fasta=new ss({path:i,gziPath:c})),r}return ne(n)}(fs);function hs(e){return e.split(">").filter((function(e){return/\S/.test(e)})).map((function(e){var t=pe(e.split("\n")),n=t[0],r=t.slice(1),o=pe(n.split(" ")),i=o[0],a=o.slice(1),s=r.join("").replace(/\s/g,"");return{id:i,description:a.join(" "),sequence:s}}))}var ps=function(){function e(t){var n=t.fasta,r=t.path;if(ee(this,e),n)this.fasta=n;else{if(!r)throw new Error("Need to pass fasta or path");this.fasta=new Br(r)}this.data=this.fasta.readFile().then((function(e){return hs(e.toString("utf8"))}))}var t,n;return ne(e,[{key:"fetch",value:(n=Q(Y().mark((function e(t,n,r){var o,i;return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return e.next=2,this.data;case 2:if(o=e.sent.find((function(e){return e.id===t})),i=r-n,o){e.next=7;break}throw new Error("no sequence with id ".concat(t," exists"));case 7:return e.abrupt("return",o.sequence.substr(n,i));case 8:case"end":return e.stop()}}),e,this)}))),function(e,t,r){return n.apply(this,arguments)})},{key:"getSequenceNames",value:(t=Q(Y().mark((function e(){return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return e.next=2,this.data;case 2:return e.abrupt("return",e.sent.map((function(e){return e.id})));case 4:case"end":return e.stop()}}),e,this)}))),function(){return t.apply(this,arguments)})}]),e}(),ms=B({__proto__:null,parseSmallFasta:hs,FetchableSmallFasta:ps,IndexedFasta:fs,BgzipIndexedFasta:ds}),gs=B(Vr);Object.defineProperty(qr,"__esModule",{value:!0}),qr.AddAssemblyFromExternalChange=void 0;var ys=ms,vs=gs,_s=function(e){oe(i,e);var t,n,r,o=fe(i);function i(e,t){var n;return ee(this,i),re(le(n=o.call(this,e,t)),"typeName","AddAssemblyFromExternalChange"),re(le(n),"changes",void 0),n.changes="changes"in e?e.changes:[e],n}return ne(i,[{key:"notification",get:function(){return'Assembly "'.concat(this.changes[0].assemblyName,'" added successfully. To use it, please refresh the page.')}},{key:"toJSON",value:function(){var e=this.assembly,t=this.changes,n=this.typeName;if(1===t.length){var r=he(t,1)[0];return{typeName:n,assembly:e,assemblyName:r.assemblyName,externalLocation:r.externalLocation}}return{typeName:n,assembly:e,changes:t}}},{key:"executeOnServer",value:(r=Q(Y().mark((function e(t){var n,r,o,i,a,s,u,c,l,f,d,h,p,m,g,y,v,_,b,w,S,x,k,E,A,C,O;return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:n=t.assemblyModel,r=t.checkModel,o=t.refSeqModel,i=t.user,a=this.assembly,s=this.changes,u=this.logger,l=(c=qt.env.CHUNK_SIZE)&&Number(c),f=we(s),e.prev=5,f.s();case 7:if((d=f.n()).done){e.next=45;break}return m=(p=d.value).assemblyName,y=(g=p.externalLocation).fa,v=g.fai,b=(_=g.gzi)?new ys.BgzipIndexedFasta({fasta:new vs.RemoteFile(y,{fetch:fetch}),fai:new vs.RemoteFile(v,{fetch:fetch}),gzi:new vs.RemoteFile(_,{fetch:fetch})}):new ys.IndexedFasta({fasta:new vs.RemoteFile(y,{fetch:fetch}),fai:new vs.RemoteFile(v,{fetch:fetch})}),e.next=14,b.getSequenceSizes();case 14:if(w=e.sent){e.next=17;break}throw new Error("No data read from indexed fasta getSequenceSizes");case 17:return e.next=19,n.findOne({name:m}).exec();case 19:if(!e.sent){e.next=22;break}throw new Error('Assembly "'.concat(m,'" already exists'));case 22:return e.next=24,r.find({default:!0}).exec();case 24:return S=e.sent.map((function(e){return e._id.toHexString()})),e.next=28,n.create([{_id:a,name:m,user:i,status:-1,externalLocation:g,checks:S}]);case 28:x=he(e.sent,1),k=x[0],null===(h=u.debug)||void 0===h||h.call(u,'Added new assembly "'.concat(m,'", docId "').concat(k._id,'"')),e.t0=Y().keys(w);case 33:if((e.t1=e.t0()).done){e.next=43;break}return E=e.t1.value,e.next=37,o.create([K(K({name:E,assembly:k._id,length:w[E]},l?{chunkSize:l}:null),{},{user:i,status:-1})]);case 37:C=he(e.sent,1),O=C[0],null===(A=u.debug)||void 0===A||A.call(u,'Added new refSeq "'.concat(E,'", docId "').concat(O._id,'"')),e.next=33;break;case 43:e.next=7;break;case 45:e.next=50;break;case 47:e.prev=47,e.t2=e.catch(5),f.e(e.t2);case 50:return e.prev=50,f.f(),e.finish(50);case 53:case"end":return e.stop()}}),e,this,[[5,47,50,53]])}))),function(e){return r.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(n=Q(Y().mark((function e(t){return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:throw new Error("executeOnLocalGFF3 not implemented");case 1:case"end":return e.stop()}}),e)}))),function(e){return n.apply(this,arguments)})},{key:"executeOnClient",value:(t=Q(Y().mark((function e(t){return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:case"end":return e.stop()}}),e)}))),function(e){return t.apply(this,arguments)})},{key:"getInverse",value:function(){return new i({typeName:this.typeName,changes:this.changes,assembly:this.assembly},{logger:this.logger})}}]),i}(ar.AssemblySpecificChange);qr.AddAssemblyFromExternalChange=_s;var bs={};Object.defineProperty(bs,"__esModule",{value:!0}),bs.AddAssemblyFromFileChange=void 0;var ws=ms,Ss=function(e){oe(s,e);var t,n,r,o,i,a=fe(s);function s(e,t){var n;return ee(this,s),re(le(n=a.call(this,e,t)),"typeName","AddAssemblyFromFileChange"),re(le(n),"changes",void 0),n.changes="changes"in e?e.changes:[e],n}return ne(s,[{key:"notification",get:function(){return'Assembly "'.concat(this.changes[0].assemblyName,'" added successfully. To use it, please refresh the page.')}},{key:"toJSON",value:function(){var e=this.assembly,t=this.changes,n=this.typeName;if(1===t.length){var r=he(t,1)[0];return{typeName:n,assembly:e,assemblyName:r.assemblyName,fileIds:r.fileIds}}return{typeName:n,assembly:e,changes:t}}},{key:"executeOnServer",value:(i=Q(Y().mark((function e(t){var n,r,o,i,a;return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:n=we(this.changes),e.prev=2,n.s();case 4:if((r=n.n()).done){e.next=11;break}return i=(o=r.value).assemblyName,a=o.fileIds,e.next=9,"gzi"in a?this.executeOnServerIndexed(t,i,a):this.executeOnServerFasta(t,i,a.fa);case 9:e.next=4;break;case 11:e.next=16;break;case 13:e.prev=13,e.t0=e.catch(2),n.e(e.t0);case 16:return e.prev=16,n.f(),e.finish(16);case 19:case"end":return e.stop()}}),e,this,[[2,13,16,19]])}))),function(e){return i.apply(this,arguments)})},{key:"executeOnServerIndexed",value:(o=Q(Y().mark((function e(t,n,r){var o,i,a,s,u,c,l,f,d,h,p,m,g,y,v,_,b,w,S,x,k,E,A,C,O,R,N,I,P;return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:if(s=(a=qt.env.CHUNK_SIZE)&&Number(a),qt.env.FILE_UPLOAD_FOLDER){e.next=5;break}throw new Error("No FILE_UPLOAD_FOLDER found in .env file");case 5:return u=r.fa,c=r.fai,l=r.gzi,f=t.assemblyModel,d=t.checkModel,h=t.fileModel,p=t.filesService,m=t.refSeqModel,g=t.user,e.next=9,h.findById(u);case 9:if(null==(y=e.sent)?void 0:y.checksum){e.next=13;break}throw new Error("No checksum for file document ".concat(y));case 13:return e.next=15,h.findById(c);case 15:if(null==(v=e.sent)?void 0:v.checksum){e.next=19;break}throw new Error("No checksum for file document ".concat(v));case 19:return e.next=21,h.findById(l);case 21:if(null==(_=e.sent)?void 0:_.checksum){e.next=25;break}throw new Error("No checksum for file document ".concat(_));case 25:return b=p.getFileHandle(y),w=p.getFileHandle(v),S=p.getFileHandle(_),x=new ws.BgzipIndexedFasta({fasta:b,fai:w,gzi:S}),e.next=31,x.getSequenceSizes();case 31:return k=e.sent,e.next=34,Promise.all([b.close(),w.close(),S.close()]);case 34:return e.next=36,f.findOne({name:n}).exec();case 36:if(!e.sent){e.next=39;break}throw new Error('Assembly "'.concat(n,'" already exists'));case 39:return e.next=41,d.find({default:!0}).exec();case 41:return E=e.sent.map((function(e){return e._id.toHexString()})),e.next=45,f.create([{_id:this.assembly,name:n,user:g,status:-1,fileIds:r,checks:E}]);case 45:A=he(e.sent,1),C=A[0],null===(o=(i=this.logger).debug)||void 0===o||o.call(i,'Added new assembly "'.concat(n,'", docId "').concat(C._id,'"')),e.t0=Y().keys(k);case 50:if((e.t1=e.t0()).done){e.next=60;break}return O=e.t1.value,e.next=54,m.create([K(K({name:O,assembly:C._id,length:k[O]},s?{chunkSize:s}:null),{},{user:g,status:-1})]);case 54:I=he(e.sent,1),P=I[0],null===(R=(N=this.logger).debug)||void 0===R||R.call(N,'Added new refSeq "'.concat(O,'", docId 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g=he(e.sent,1),y=g[0],null===(a=(s=this.logger).debug)||void 0===a||a.call(s,'Added new assembly "'.concat(n,'", docId "').concat(y._id,'"')),null===(u=(c=this.logger).debug)||void 0===u||u.call(c,'File type: "'.concat(p.type,'", assemblyId: "').concat(y._id,'"')),e.next=25,this.addRefSeqIntoDb(p,y._id.toString(),t);case 25:case"end":return e.stop()}}),e,this)}))),function(e,t,n){return r.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(n=Q(Y().mark((function e(t){return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:throw new Error("executeOnLocalGFF3 not implemented");case 1:case"end":return e.stop()}}),e)}))),function(e){return n.apply(this,arguments)})},{key:"executeOnClient",value:(t=Q(Y().mark((function e(t){return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:case"end":return e.stop()}}),e)}))),function(e){return t.apply(this,arguments)})},{key:"getInverse",value:function(){return new s({typeName:this.typeName,changes:this.changes,assembly:this.assembly},{logger:this.logger})}}]),s}(ir.FromFileBaseChange);bs.AddAssemblyFromFileChange=Ss;var xs={},ks={};Object.defineProperty(ks,"__esModule",{value:!0}),ks.DeleteFeatureChange=void 0,ks.isDeleteFeatureChange=function(e){return"DeleteFeatureChange"===e.typeName};var Es=xs,As=function(e){oe(i,e);var t,n,r,o=fe(i);function i(e,t){var n;return ee(this,i),re(le(n=o.call(this,e,t)),"typeName","DeleteFeatureChange"),re(le(n),"changes",void 0),n.changes="changes"in e?e.changes:[e],n}return ne(i,[{key:"toJSON",value:function(){var e=this.assembly,t=this.changedIds,n=this.changes,r=this.typeName;if(1===n.length){var o=he(n,1)[0];return{typeName:r,changedIds:t,assembly:e,deletedFeature:o.deletedFeature,parentFeatureId:o.parentFeatureId}}return{typeName:r,changedIds:t,assembly:e,changes:n}}},{key:"executeOnServer",value:(r=Q(Y().mark((function e(t){var n,r,o,i,a,s,u=this;return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:n=t.featureModel,r=t.session,o=this.logger,i=we(this.changes),e.prev=3,s=Y().mark((function e(){var t,i,s,c,l,f,d,h,p;return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return s=(i=a.value).deletedFeature,c=i.parentFeatureId,e.next=4,n.findOne({allIds:s._id}).session(r).exec();case 4:if(l=e.sent){e.next=9;break}throw f="*** ERROR: The following featureId was not found in database ='".concat(s._id,"'"),o.error(f),new Error(f);case 9:if(!l._id.equals(s._id)){e.next=16;break}if(!c){e.next=12;break}throw new Error('Feature "'.concat(s._id,'" is top-level, but received a parent feature ID'));case 12:return e.next=14,n.findByIdAndDelete(l._id);case 14:return null===(d=o.debug)||void 0===d||d.call(o,'Feature "'.concat(s._id,'" deleted from document "').concat(l._id,'". Whole document deleted.')),e.abrupt("return",1);case 16:return(h=u.findAndDeleteChildFeature(l,s._id)).push(s._id),l.allIds=l.allIds.filter((function(e){return!h.includes(e)})),l.markModified("children"),e.prev=20,e.next=23,l.save();case 23:e.next=29;break;case 25:throw e.prev=25,e.t0=e.catch(20),null===(p=o.debug)||void 0===p||p.call(o,"*** FAILED: ".concat(e.t0)),e.t0;case 29:null===(t=o.debug)||void 0===t||t.call(o,'Feature "'.concat(s._id,'" deleted from document "').concat(l._id,'"'));case 30:case"end":return e.stop()}}),e,null,[[20,25]])})),i.s();case 6:if((a=i.n()).done){e.next=12;break}return e.delegateYield(s(),"t0",8);case 8:if(!e.t0){e.next=10;break}return e.abrupt("continue",10);case 10:e.next=6;break;case 12:e.next=17;break;case 14:e.prev=14,e.t1=e.catch(3),i.e(e.t1);case 17:return e.prev=17,i.f(),e.finish(17);case 20:case"end":return e.stop()}}),e,this,[[3,14,17,20]])}))),function(e){return r.apply(this,arguments)})},{key:"findAndDeleteChildFeature",value:function(e,t){if(!e.children)throw new Error("Feature ".concat(e._id," has no children"));var n=e._id,r=e.children,o=r.get(t);if(o){var i=this.getChildFeatureIds(o);return r.delete(t),i}var a,s=we(r);try{for(s.s();!(a=s.n()).done;){var u=he(a.value,2)[1];try{return this.findAndDeleteChildFeature(u,t)}catch(e){}}}catch(e){s.e(e)}finally{s.f()}throw new Error('Feature "'.concat(t,'" not found in ').concat(n))}},{key:"executeOnLocalGFF3",value:(n=Q(Y().mark((function e(t){return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:throw new Error("executeOnLocalGFF3 not implemented");case 1:case"end":return e.stop()}}),e)}))),function(e){return n.apply(this,arguments)})},{key:"executeOnClient",value:(t=Q(Y().mark((function e(t){var n,r,o,i,a,s;return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:if(t){e.next=2;break}throw new Error("No data store");case 2:n=we(this.changes),e.prev=3,n.s();case 5:if((r=n.n()).done){e.next=18;break}if(i=(o=r.value).deletedFeature,!(a=o.parentFeatureId)){e.next=15;break}if(s=t.getFeature(a)){e.next=12;break}throw new Error('Could not find parent feature "'.concat(a,'"'));case 12:s.deleteChild(i._id),e.next=16;break;case 15:t.getFeature(i._id)&&t.deleteFeature(i._id);case 16:e.next=5;break;case 18:e.next=23;break;case 20:e.prev=20,e.t0=e.catch(3),n.e(e.t0);case 23:return e.prev=23,n.f(),e.finish(23);case 26:case"end":return e.stop()}}),e,this,[[3,20,23,26]])}))),function(e){return t.apply(this,arguments)})},{key:"getInverse",value:function(){var e,t=this.assembly,n=this.changes,r=this.logger,o=me(this.changedIds).reverse(),i=me(n).reverse().map((function(e){return{addedFeature:e.deletedFeature,parentFeatureId:e.parentFeatureId}}));return null===(e=r.debug)||void 0===e||e.call(r,"INVERSE CHANGE '".concat(JSON.stringify(i),"'")),new Es.AddFeatureChange({changedIds:o,typeName:"AddFeatureChange",changes:i,assembly:t},{logger:r})}}]),i}(ar.FeatureChange);ks.DeleteFeatureChange=As,Object.defineProperty(xs,"__esModule",{value:!0}),xs.AddFeatureChange=void 0,xs.isAddFeatureChange=function(e){return"AddFeatureChange"===e.typeName};var Cs=ks,Os=function(e){oe(i,e);var t,n,r,o=fe(i);function i(e,t){var n;return ee(this,i),re(le(n=o.call(this,e,t)),"typeName","AddFeatureChange"),re(le(n),"changes",void 0),n.changes="changes"in e?e.changes:[e],n}return ne(i,[{key:"toJSON",value:function(){var e=this.assembly,t=this.changedIds,n=this.changes,r=this.typeName;if(1===n.length){var o=he(n,1)[0];return{typeName:r,changedIds:t,assembly:e,addedFeature:o.addedFeature,parentFeatureId:o.parentFeatureId,copyFeature:o.copyFeature,allIds:o.allIds}}return{typeName:r,changedIds:t,assembly:e,changes:n}}},{key:"executeOnServer",value:(r=Q(Y().mark((function e(t){var n,r,o,i,a,s,u,c,l,f,d,h,p,m,g,y,v,_,b,w,S,x,k,E,A,C,O,R,N,I,P,T,M,j,F,L;return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return o=t.assemblyModel,i=t.featureModel,a=t.refSeqModel,s=t.session,u=t.user,c=this.assembly,l=this.changes,f=this.logger,e.next=4,o.findById(c).session(s).exec();case 4:if(e.sent){e.next=9;break}throw d='*** ERROR: Assembly with id "'.concat(c,'" not found'),f.error(d),new Error(d);case 9:h=0,null===(n=f.debug)||void 0===n||n.call(f,"changes: ".concat(JSON.stringify(l))),p=we(l),e.prev=12,p.s();case 14:if((m=p.n()).done){e.next=64;break}return y=m.value,null===(g=f.debug)||void 0===g||g.call(f,"change: ".concat(JSON.stringify(y))),_=y.allIds,b=y.copyFeature,w=y.parentFeatureId,S=(v=y.addedFeature)._id,x=v.refSeq,e.next=21,a.findById(x).session(s).exec();case 21:if(e.sent){e.next=24;break}throw new Error('RefSeq was not found by assembly "'.concat(c,'" and seq_id "').concat(x,'" not found'));case 24:if(!b){e.next=34;break}return e.next=27,i.create([K(K({},v),{},{allIds:_,status:-1,user:u})],{session:s});case 27:E=he(e.sent,1),A=E[0],null===(k=f.debug)||void 0===k||k.call(f,'Copied feature, docId "'.concat(A._id,'" to assembly "').concat(c,'"')),h++,e.next=61;break;case 34:if(!w){e.next=53;break}return e.next=37,i.findOne({allIds:w}).session(s).exec();case 37:if(R=e.sent){e.next=40;break}throw new Error('Could not find feature with ID "'.concat(w,'"'));case 40:if(N=this.getFeatureFromId(R,w)){e.next=43;break}throw new Error('Could not find feature with ID "'.concat(w,'" in feature "').concat(R._id,'"'));case 43:return N.children||(N.children=new Map),null!==(C=N.attributes)&&void 0!==C&&C._id||((I=N.attributes)||(I={}),I=K({_id:[N._id.toString()]},JSON.parse(JSON.stringify(I))),N.attributes=I),N.children.set(S,K(K({allIds:[]},v),{},{_id:S})),N.children=new Map(me(N.children.entries()).sort((function(e,t){return e[1].min-t[1].min}))),P=this.getChildFeatureIds(v),(O=R.allIds).push.apply(O,[S].concat(me(P))),e.next=51,R.save();case 51:e.next=61;break;case 53:return M=this.getChildFeatureIds(v),j=[S].concat(me(M)),e.next=57,i.create([K({allIds:j,status:0},v)],{session:s});case 57:F=he(e.sent,1),L=F[0],null===(T=f.verbose)||void 0===T||T.call(f,'Added docId "'.concat(L._id,'"'));case 61:h++;case 62:e.next=14;break;case 64:e.next=69;break;case 66:e.prev=66,e.t0=e.catch(12),p.e(e.t0);case 69:return e.prev=69,p.f(),e.finish(69);case 72:null===(r=f.debug)||void 0===r||r.call(f,"Added ".concat(h," new feature(s) into database."));case 73:case"end":return e.stop()}}),e,this,[[12,66,69,72]])}))),function(e){return r.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(n=Q(Y().mark((function e(t){return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:throw new Error("executeOnLocalGFF3 not implemented");case 1:case"end":return e.stop()}}),e)}))),function(e){return n.apply(this,arguments)})},{key:"executeOnClient",value:(t=Q(Y().mark((function e(t){var n,r,o,i,a,s,u;return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:if(t){e.next=2;break}throw new Error("No data store");case 2:n=this.assembly,r=we(this.changes),e.prev=4,r.s();case 6:if((o=r.n()).done){e.next=20;break}if(a=(i=o.value).addedFeature,!(s=i.parentFeatureId)){e.next=17;break}if(u=t.getFeature(s)){e.next=13;break}throw new Error('Could not find parent feature "'.concat(s,'"'));case 13:u.attributes.get("_id")||u.setAttribute("_id",[u._id]),u.addChild(a),e.next=18;break;case 17:t.addFeature(n,a);case 18:e.next=6;break;case 20:e.next=25;break;case 22:e.prev=22,e.t0=e.catch(4),r.e(e.t0);case 25:return e.prev=25,r.f(),e.finish(25);case 28:case"end":return e.stop()}}),e,this,[[4,22,25,28]])}))),function(e){return t.apply(this,arguments)})},{key:"getInverse",value:function(){var e=this.assembly,t=this.changes,n=this.logger,r=me(this.changedIds).reverse(),o=me(t).reverse().map((function(e){return{deletedFeature:e.addedFeature,parentFeatureId:e.parentFeatureId}}));return new Cs.DeleteFeatureChange({changedIds:r,typeName:"DeleteFeatureChange",changes:o,assembly:e},{logger:n})}}]),i}(ar.FeatureChange);xs.AddFeatureChange=Os;var Rs={};Object.defineProperty(Rs,"__esModule",{value:!0}),Rs.AddFeaturesFromFileChange=void 0;var Ns=function(e){oe(i,e);var t,n,r,o=fe(i);function i(e,t){var n,r;return ee(this,i),re(le(r=o.call(this,e,t)),"typeName","AddFeaturesFromFileChange"),re(le(r),"changes",void 0),re(le(r),"deleteExistingFeatures",!1),r.deleteExistingFeatures=null!==(n=e.deleteExistingFeatures)&&void 0!==n&&n,r.changes="changes"in e?e.changes:[e],r}return ne(i,[{key:"notification",get:function(){return"Features have been added. To see them, please refresh the page."}},{key:"toJSON",value:function(){var e=this.assembly,t=this.changes,n=this.deleteExistingFeatures,r=this.typeName;return 1===t.length?{typeName:r,assembly:e,fileId:he(t,1)[0].fileId,deleteExistingFeatures:n}:{typeName:r,assembly:e,changes:t,deleteExistingFeatures:n}}},{key:"executeOnServer",value:(r=Q(Y().mark((function e(t){var n,r,o,i,a,s,u,c,l,f,d,h,p,m,g,y,v,_,b;return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:if(r=t.fileModel,o=t.filesService,i=this.changes,a=this.logger,!this.deleteExistingFeatures){e.next=5;break}return e.next=5,this.removeExistingFeatures(t);case 5:s=we(i),e.prev=6,s.s();case 8:if((u=s.n()).done){e.next=56;break}if(l=u.value.fileId,qt.env.FILE_UPLOAD_FOLDER){e.next=14;break}throw new Error("No FILE_UPLOAD_FOLDER found in .env file");case 14:return e.next=16,r.findById(l).exec();case 16:if(f=e.sent){e.next=19;break}throw new Error('File "'.concat(l,'" not found in Mongo'));case 19:null===(c=a.debug)||void 0===c||c.call(a,'FileId "'.concat(l,'", checksum "').concat(f.checksum,'"')),d=o.parseGFF3(o.getFileStream(f)),h=0,p=!1,m=!1,e.prev=24,y=W(d);case 26:return e.next=28,y.next();case 28:if(!(p=!(v=e.sent).done)){e.next=38;break}return _=v.value,e.next=33,this.addFeatureIntoDb(_,t);case 33:++h%1e3==0&&(null===(b=a.debug)||void 0===b||b.call(a,"Processed ".concat(h," features")));case 35:p=!1,e.next=26;break;case 38:e.next=44;break;case 40:e.prev=40,e.t0=e.catch(24),m=!0,g=e.t0;case 44:if(e.prev=44,e.prev=45,!p||null==y.return){e.next=49;break}return e.next=49,y.return();case 49:if(e.prev=49,!m){e.next=52;break}throw g;case 52:return e.finish(49);case 53:return e.finish(44);case 54:e.next=8;break;case 56:e.next=61;break;case 58:e.prev=58,e.t1=e.catch(6),s.e(e.t1);case 61:return e.prev=61,s.f(),e.finish(61);case 64:null===(n=a.debug)||void 0===n||n.call(a,"New features added into database!");case 65:case"end":return e.stop()}}),e,this,[[6,58,61,64],[24,40,44,54],[45,,49,53]])}))),function(e){return r.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(n=Q(Y().mark((function e(t){return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:throw new Error("executeOnLocalGFF3 not implemented");case 1:case"end":return e.stop()}}),e)}))),function(e){return n.apply(this,arguments)})},{key:"executeOnClient",value:(t=Q(Y().mark((function e(t){return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:case"end":return e.stop()}}),e)}))),function(e){return t.apply(this,arguments)})},{key:"getInverse",value:function(){return new i({typeName:this.typeName,changes:this.changes,assembly:this.assembly},{logger:this.logger})}}]),i}(ir.FromFileBaseChange);Rs.AddFeaturesFromFileChange=Ns;var Is={};Object.defineProperty(Is,"__esModule",{value:!0}),Is.AddRefSeqAliasesChange=void 0;var Ps=O.default,Ts=function(e){oe(r,e);var t,n=fe(r);function r(e,t){var o;return ee(this,r),re(le(o=n.call(this,e,t)),"typeName","AddRefSeqAliasesChange"),re(le(o),"refSeqAliases",void 0),o.refSeqAliases=e.refSeqAliases,o}return ne(r,[{key:"executeOnClient",value:function(e){var t=(0,Ps.getSession)(e).assemblyManager.get(this.assembly);if(!t)throw new Error("assembly ".concat(this.assembly," not found"));var n=t.refNameAliases,r=t.lowerCaseRefNameAliases;if(!n||!r)throw new Error("Session refNameAliases not found in assembly");var o,i=we(this.refSeqAliases);try{for(i.s();!(o=i.n()).done;){var a,s=o.value,u=s.refName,c=we(s.aliases);try{for(c.s();!(a=c.n()).done;){var l=a.value;n[l]=u,r[l.toLowerCase()]=u}}catch(e){c.e(e)}finally{c.f()}}}catch(e){i.e(e)}finally{i.f()}return t.setRefNameAliases(n,r),Promise.resolve()}},{key:"getInverse",value:function(){throw new Error("Method not implemented.")}},{key:"toJSON",value:function(){return{assembly:this.assembly,typeName:this.typeName,refSeqAliases:this.refSeqAliases}}},{key:"executeOnServer",value:(t=Q(Y().mark((function e(t){var n,r,o,i,a,s,u,c,l,f;return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:n=t.refSeqModel,r=t.session,o=this.assembly,i=this.logger,a=we(this.refSeqAliases),e.prev=3,a.s();case 5:if((s=a.n()).done){e.next=13;break}return c=s.value,null===(u=i.debug)||void 0===u||u.call(i,"Updating Refname alias for assembly: ".concat(o,", refSeqAlias: ").concat(JSON.stringify(c))),l=c.aliases,f=c.refName,e.next=11,n.updateOne({assembly:o,name:f},{$set:{aliases:l}}).session(r);case 11:e.next=5;break;case 13:e.next=18;break;case 15:e.prev=15,e.t0=e.catch(3),a.e(e.t0);case 18:return e.prev=18,a.f(),e.finish(18);case 21:case"end":return e.stop()}}),e,this,[[3,15,18,21]])}))),function(e){return t.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:function(e){throw new Error("Method not implemented.")}},{key:"notification",get:function(){return"RefSeq aliases have been added."}}]),r}(ar.AssemblySpecificChange);Is.AddRefSeqAliasesChange=Ts;var Ms={};Object.defineProperty(Ms,"__esModule",{value:!0}),Ms.DeleteAssemblyChange=void 0;var js=O.default,Fs=function(e){oe(i,e);var t,n,r,o=fe(i);function i(){var e;ee(this,i);for(var t=arguments.length,n=new Array(t),r=0;r<t;r++)n[r]=arguments[r];return re(le(e=o.call.apply(o,[this].concat(n))),"typeName","DeleteAssemblyChange"),e}return ne(i,[{key:"notification",get:function(){return'Assembly "'.concat(this.assembly,'" deleted successfully.')}},{key:"toJSON",value:function(){return{typeName:this.typeName,assembly:this.assembly}}},{key:"executeOnServer",value:(r=Q(Y().mark((function e(t){var n,r,o,i,a,s,u,c,l,f;return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return r=t.assemblyModel,o=t.featureModel,i=t.refSeqChunkModel,a=t.refSeqModel,s=t.session,u=this.assembly,c=this.logger,e.next=4,r.findById(u).session(s).exec();case 4:if(e.sent){e.next=9;break}throw l='*** ERROR: Assembly with id "'.concat(u,'" not found'),c.error(l),new Error(l);case 9:return e.next=11,a.find({assembly:u}).exec();case 11:return f=e.sent.map((function(e){return e._id})),e.next=15,i.deleteMany({refSeq:f}).exec();case 15:return e.next=17,o.deleteMany({refSeq:f}).exec();case 17:return e.next=19,a.deleteMany({assembly:u}).exec();case 19:return e.next=21,r.findByIdAndDelete(u).exec();case 21:null===(n=c.debug)||void 0===n||n.call(c,'Assembly "'.concat(u,'" deleted from database.'));case 22:case"end":return e.stop()}}),e,this)}))),function(e){return r.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(n=Q(Y().mark((function e(t){return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:throw new Error("executeOnLocalGFF3 not implemented");case 1:case"end":return e.stop()}}),e)}))),function(e){return n.apply(this,arguments)})},{key:"executeOnClient",value:(t=Q(Y().mark((function e(t){var n,r,o,i;return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:if(o=this.assembly,t){e.next=3;break}throw new Error("No data store");case 3:return i=(0,js.getSession)(t),t.assemblies.has(o)&&t.deleteAssembly(o),e.next=7,null===(n=i.removeAssembly)||void 0===n?void 0:n.call(i,o);case 7:return e.next=9,null===(r=i.removeSessionAssembly)||void 0===r?void 0:r.call(i,o);case 9:case"end":return e.stop()}}),e,this)}))),function(e){return t.apply(this,arguments)})},{key:"getInverse",value:function(){return new i({typeName:"DeleteAssemblyChange",assembly:this.assembly},{logger:this.logger})}}]),i}(ar.AssemblySpecificChange);Ms.DeleteAssemblyChange=Fs;var Ls={};Object.defineProperty(Ls,"__esModule",{value:!0}),Ls.DeleteUserChange=void 0;var Ds=function(e){oe(i,e);var t,n,r,o=fe(i);function i(e,t){var n;return ee(this,i),re(le(n=o.call(this,e,t)),"typeName","DeleteUserChange"),re(le(n),"changes",void 0),re(le(n),"userId",void 0),n.changes="changes"in e?e.changes:[e],n.userId=e.userId,n}return ne(i,[{key:"toJSON",value:function(){return{typeName:this.typeName,userId:this.userId}}},{key:"executeOnServer",value:(r=Q(Y().mark((function e(t){var n,r,o,i,a;return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return n=t.session,r=t.userModel,o=this.logger,i=this.userId,e.next=4,r.findOneAndDelete({_id:i}).session(n).exec();case 4:if(e.sent){e.next=9;break}throw a='*** ERROR: User with id "'.concat(i,'" not found'),o.error(a),new Error(a);case 9:case"end":return e.stop()}}),e,this)}))),function(e){return r.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(n=Q(Y().mark((function e(t){return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:throw new Error("executeOnLocalGFF3 not implemented");case 1:case"end":return e.stop()}}),e)}))),function(e){return n.apply(this,arguments)})},{key:"executeOnClient",value:(t=Q(Y().mark((function e(t){return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:case"end":return e.stop()}}),e)}))),function(e){return t.apply(this,arguments)})},{key:"getInverse",value:function(){return new i({typeName:this.typeName,userId:this.userId},{logger:this.logger})}}]),i}(ar.Change);Ls.DeleteUserChange=Ds;var qs={};Object.defineProperty(qs,"__esModule",{value:!0}),qs.FeatureAttributeChange=void 0,qs.isFeatureAttributeChange=function(e){return"FeatureAttributeChange"===e.typeName};var Bs=function(e){oe(i,e);var t,n,r,o=fe(i);function i(e,t){var n;return ee(this,i),re(le(n=o.call(this,e,t)),"typeName","FeatureAttributeChange"),re(le(n),"changes",void 0),n.changes="changes"in e?e.changes:[e],n}return ne(i,[{key:"toJSON",value:function(){var e=this.assembly,t=this.changedIds,n=this.changes,r=this.typeName;if(1===n.length){var o=he(n,1)[0];return{typeName:r,changedIds:t,assembly:e,featureId:o.featureId,attributes:o.attributes}}return{typeName:r,changedIds:t,assembly:e,changes:n}}},{key:"executeOnServer",value:(r=Q(Y().mark((function e(t){var n,r,o,i,a,s,u,c,l,f,d,h,p,m,g,y,v,_,b,w,S;return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:n=t.featureModel,r=t.session,i=this.logger,a=[],s=we(o=this.changes),e.prev=4,s.s();case 6:if((u=s.n()).done){e.next=26;break}return f=u.value.featureId,e.next=11,n.findOne({allIds:f}).session(r).exec();case 11:if(d=e.sent){e.next=16;break}throw h="*** ERROR: The following featureId was not found in database ='".concat(f,"'"),i.error(h),new Error(h);case 16:if(null===(c=i.debug)||void 0===c||c.call(i,"*** Feature found: ".concat(JSON.stringify(d))),p=this.getFeatureFromId(d,f)){e.next=22;break}throw i.error("ERROR when searching feature by featureId"),new Error("ERROR when searching feature by featureId");case 22:null===(l=i.debug)||void 0===l||l.call(i,"*** Found feature: ".concat(JSON.stringify(p))),a.push({feature:p,topLevelFeature:d});case 24:e.next=6;break;case 26:e.next=31;break;case 28:e.prev=28,e.t0=e.catch(4),s.e(e.t0);case 31:return e.prev=31,s.f(),e.finish(31);case 34:m=we(o.entries()),e.prev=35,m.s();case 37:if((g=m.n()).done){e.next=55;break}return v=he(g.value,2),w=(_=a[v[0]]).topLevelFeature,(b=_.feature).attributes=v[1].attributes,w._id.equals(b._id)?w.markModified("attributes"):w.markModified("children"),e.prev=43,e.next=46,w.save();case 46:e.next=52;break;case 48:throw e.prev=48,e.t1=e.catch(43),null===(S=i.debug)||void 0===S||S.call(i,"*** FAILED: ".concat(e.t1)),e.t1;case 52:null===(y=i.debug)||void 0===y||y.call(i,"*** Feature attributes modified (added, edited or deleted), docId: ".concat(JSON.stringify(w)));case 53:e.next=37;break;case 55:e.next=60;break;case 57:e.prev=57,e.t2=e.catch(35),m.e(e.t2);case 60:return e.prev=60,m.f(),e.finish(60);case 63:case"end":return e.stop()}}),e,this,[[4,28,31,34],[35,57,60,63],[43,48]])}))),function(e){return r.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(n=Q(Y().mark((function e(t){return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:throw new Error("applyToLocalGFF3 not implemented");case 1:case"end":return e.stop()}}),e)}))),function(e){return n.apply(this,arguments)})},{key:"executeOnClient",value:(t=Q(Y().mark((function e(t){var n,r,o,i,a,s;return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:if(t){e.next=2;break}throw new Error("No data store");case 2:n=we(this.changedIds.entries()),e.prev=3,n.s();case 5:if((r=n.n()).done){e.next=13;break}if(o=he(r.value,2),i=o[0],s=t.getFeature(a=o[1])){e.next=10;break}throw new Error('Could not find feature with identifier "'.concat(a,'"'));case 10:s.setAttributes(new Map(Object.entries(this.changes[i].attributes)));case 11:e.next=5;break;case 13:e.next=18;break;case 15:e.prev=15,e.t0=e.catch(3),n.e(e.t0);case 18:return e.prev=18,n.f(),e.finish(18);case 21:case"end":return e.stop()}}),e,this,[[3,15,18,21]])}))),function(e){return t.apply(this,arguments)})},{key:"getInverse",value:function(){var e=this.assembly,t=this.changes,n=this.logger;return new 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New object: ".concat(JSON.stringify(k)));case 57:e.next=41;break;case 59:e.next=64;break;case 61:e.prev=61,e.t2=e.catch(39),v.e(e.t2);case 64:return e.prev=64,v.f(),e.finish(64);case 67:case"end":return e.stop()}}),e,this,[[4,32,35,38],[39,61,64,67],[47,52]])}))),function(e){return r.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(n=Q(Y().mark((function e(t){return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:throw new Error("executeOnLocalGFF3 not implemented");case 1:case"end":return e.stop()}}),e)}))),function(e){return n.apply(this,arguments)})},{key:"executeOnClient",value:(t=Q(Y().mark((function e(t){var n,r,o,i,a,s;return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:if(t){e.next=2;break}throw new Error("No data store");case 2:n=we(this.changedIds.entries()),e.prev=3,n.s();case 5:if((r=n.n()).done){e.next=13;break}if(o=he(r.value,2),i=o[0],s=t.getFeature(a=o[1])){e.next=10;break}throw new Error('Could not find feature with identifier "'.concat(a,'"'));case 10:s.setStrand(this.changes[i].newStrand);case 11:e.next=5;break;case 13:e.next=18;break;case 15:e.prev=15,e.t0=e.catch(3),n.e(e.t0);case 18:return e.prev=18,n.f(),e.finish(18);case 21:case"end":return e.stop()}}),e,this,[[3,15,18,21]])}))),function(e){return t.apply(this,arguments)})},{key:"getInverse",value:function(){var e=this.assembly,t=this.changes,n=this.logger,r=this.typeName;return new i({changedIds:me(this.changedIds).reverse(),typeName:r,changes:me(t).reverse().map((function(e){return{featureId:e.featureId,oldStrand:e.newStrand,newStrand:e.oldStrand}})),assembly:e},{logger:n})}}]),i}(ar.FeatureChange);Ks.StrandChange=Ys;var Zs={};Object.defineProperty(Zs,"__esModule",{value:!0}),Zs.TypeChange=void 0;var Xs=function(e){oe(i,e);var t,n,r,o=fe(i);function i(e,t){var n;return ee(this,i),re(le(n=o.call(this,e,t)),"typeName","TypeChange"),re(le(n),"changes",void 0),n.changes="changes"in e?e.changes:[e],n}return ne(i,[{key:"toJSON",value:function(){var e=this.assembly,t=this.changedIds,n=this.changes,r=this.typeName;if(1===n.length){var o=he(n,1)[0];return{typeName:r,changedIds:t,assembly:e,featureId:o.featureId,oldType:o.oldType,newType:o.newType}}return{typeName:r,changedIds:t,assembly:e,changes:n}}},{key:"executeOnServer",value:(r=Q(Y().mark((function e(t){var n,r,o,i,a,s,u,c,l,f,d,h,p,m,g,y,v,_,b,w,S,x,k,E;return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:n=t.featureModel,r=t.session,i=this.logger,a=[],s=we(o=this.changes),e.prev=4,s.s();case 6:if((u=s.n()).done){e.next=30;break}return d=(f=u.value).featureId,h=f.oldType,e.next=11,n.findOne({allIds:d}).session(r).exec();case 11:if(p=e.sent){e.next=16;break}throw m="*** ERROR: The following featureId was not found in database ='".concat(d,"'"),i.error(m),new Error(m);case 16:if(null===(c=i.debug)||void 0===c||c.call(i,"*** Feature found: ".concat(JSON.stringify(p))),g=this.getFeatureFromId(p,d)){e.next=22;break}throw i.error("ERROR when searching feature by featureId"),new Error("ERROR when searching feature by featureId");case 22:if(null===(l=i.debug)||void 0===l||l.call(i,"*** Found feature: ".concat(JSON.stringify(g))),g.type===h){e.next=27;break}throw y="*** ERROR: Feature's current type \"".concat(p.type,'" doesn\'t match with expected value "').concat(h,'"'),i.error(y),new Error(y);case 27:a.push({feature:g,topLevelFeature:p});case 28:e.next=6;break;case 30:e.next=35;break;case 32:e.prev=32,e.t0=e.catch(4),s.e(e.t0);case 35:return e.prev=35,s.f(),e.finish(35);case 38:v=we(o.entries()),e.prev=39,v.s();case 41:if((_=v.n()).done){e.next=59;break}return w=he(_.value,2),k=(S=a[w[0]]).topLevelFeature,(x=S.feature).type=w[1].newType,k._id.equals(x._id)?k.markModified("type"):k.markModified("children"),e.prev=47,e.next=50,k.save();case 50:e.next=56;break;case 52:throw e.prev=52,e.t1=e.catch(47),null===(E=i.debug)||void 0===E||E.call(i,"*** FAILED: ".concat(e.t1)),e.t1;case 56:null===(b=i.debug)||void 0===b||b.call(i,"*** Object updated in Mongo. New object: ".concat(JSON.stringify(k)));case 57:e.next=41;break;case 59:e.next=64;break;case 61:e.prev=61,e.t2=e.catch(39),v.e(e.t2);case 64:return e.prev=64,v.f(),e.finish(64);case 67:case"end":return e.stop()}}),e,this,[[4,32,35,38],[39,61,64,67],[47,52]])}))),function(e){return r.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(n=Q(Y().mark((function e(t){return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:throw new Error("executeOnLocalGFF3 not implemented");case 1:case"end":return e.stop()}}),e)}))),function(e){return n.apply(this,arguments)})},{key:"executeOnClient",value:(t=Q(Y().mark((function e(t){var n,r,o,i,a,s;return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:if(t){e.next=2;break}throw new Error("No data store");case 2:n=we(this.changedIds.entries()),e.prev=3,n.s();case 5:if((r=n.n()).done){e.next=13;break}if(o=he(r.value,2),i=o[0],s=t.getFeature(a=o[1])){e.next=10;break}throw new Error('Could not find feature with identifier "'.concat(a,'"'));case 10:s.setType(this.changes[i].newType);case 11:e.next=5;break;case 13:e.next=18;break;case 15:e.prev=15,e.t0=e.catch(3),n.e(e.t0);case 18:return e.prev=18,n.f(),e.finish(18);case 21:case"end":return e.stop()}}),e,this,[[3,15,18,21]])}))),function(e){return t.apply(this,arguments)})},{key:"getInverse",value:function(){var e=this.assembly,t=this.changes,n=this.logger,r=this.typeName;return new i({changedIds:me(this.changedIds).reverse(),typeName:r,changes:me(t).reverse().map((function(e){return{featureId:e.featureId,oldType:e.newType,newType:e.oldType}})),assembly:e},{logger:n})}}]),i}(ar.FeatureChange);Zs.TypeChange=Xs;var Qs={};Object.defineProperty(Qs,"__esModule",{value:!0}),Qs.UserChange=void 0;var eu=function(e){oe(i,e);var t,n,r,o=fe(i);function i(e,t){var n;return ee(this,i),re(le(n=o.call(this,e,t)),"typeName","UserChange"),re(le(n),"changes",void 0),re(le(n),"userId",void 0),n.changes="changes"in e?e.changes:[e],n.userId=e.userId,n}return ne(i,[{key:"toJSON",value:function(){var e=this.changes,t=this.typeName,n=this.userId;return 1===e.length?{typeName:t,userId:n,role:he(e,1)[0].role}:{typeName:t,userId:n,changes:e}}},{key:"executeOnServer",value:(r=Q(Y().mark((function e(t){var n,r,o,i,a,s,u,c,l,f,d;return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:n=t.session,r=t.userModel,i=this.logger,a=this.userId,s=we(o=this.changes),e.prev=3,s.s();case 5:if((u=s.n()).done){e.next=18;break}return l=u.value,null===(c=i.debug)||void 0===c||c.call(i,"change: ".concat(JSON.stringify(o))),f=l.role,e.next=11,r.findByIdAndUpdate(a,{role:f}).session(n).exec();case 11:if(e.sent){e.next=16;break}throw d='*** ERROR: User with id "'.concat(a,'" not found'),i.error(d),new Error(d);case 16:e.next=5;break;case 18:e.next=23;break;case 20:e.prev=20,e.t0=e.catch(3),s.e(e.t0);case 23:return e.prev=23,s.f(),e.finish(23);case 26:case"end":return e.stop()}}),e,this,[[3,20,23,26]])}))),function(e){return r.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(n=Q(Y().mark((function e(t){return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:throw new Error("executeOnLocalGFF3 not implemented");case 1:case"end":return e.stop()}}),e)}))),function(e){return n.apply(this,arguments)})},{key:"executeOnClient",value:(t=Q(Y().mark((function e(t){return Y().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:case"end":return e.stop()}}),e)}))),function(e){return t.apply(this,arguments)})},{key:"getInverse",value:function(){return new i({typeName:this.typeName,changes:this.changes,userId:this.userId},{logger:this.logger})}}]),i}(ar.Change);Qs.UserChange=eu,function(e){Object.defineProperty(e,"__esModule",{value:!0}),e.changes=void 0;var t=et;e.changes={AddAssemblyAndFeaturesFromFileChange:or.AddAssemblyAndFeaturesFromFileChange,AddAssemblyFromFileChange:bs.AddAssemblyFromFileChange,AddAssemblyFromExternalChange:qr.AddAssemblyFromExternalChange,AddFeatureChange:xs.AddFeatureChange,AddFeaturesFromFileChange:Rs.AddFeaturesFromFileChange,DeleteAssemblyChange:Ms.DeleteAssemblyChange,DeleteFeatureChange:ks.DeleteFeatureChange,DeleteUserChange:Ls.DeleteUserChange,FeatureAttributeChange:qs.FeatureAttributeChange,ImportJBrowseConfigChange:Us.ImportJBrowseConfigChange,LocationEndChange:Ws.LocationEndChange,LocationStartChange:$s.LocationStartChange,StrandChange:Ks.StrandChange,TypeChange:Zs.TypeChange,UserChange:Qs.UserChange,AddRefSeqAliasesChange:Is.AddRefSeqAliasesChange},t.__exportStar(or,e),t.__exportStar(bs,e),t.__exportStar(qr,e),t.__exportStar(xs,e),t.__exportStar(Rs,e),t.__exportStar(Ms,e),t.__exportStar(ks,e),t.__exportStar(Ls,e),t.__exportStar(qs,e),t.__exportStar(Us,e),t.__exportStar(Ws,e),t.__exportStar($s,e),t.__exportStar(Ks,e),t.__exportStar(Zs,e),t.__exportStar(Qs,e),t.__exportStar(Is,e)}(rr);var 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e;3===o.readyState&&(null===(e=t.opts.cookieJar)||void 0===e||e.parseCookies(o)),4===o.readyState&&(200===o.status||1223===o.status?t.onLoad():t.setTimeoutFn((function(){t.onError("number"==typeof o.status?o.status:0)}),0))},o.send(this.data)}catch(e){return void this.setTimeoutFn((function(){t.onError(e)}),0)}"undefined"!=typeof document&&(this.index=n.requestsCount++,n.requests[this.index]=this)}},{key:"onError",value:function(e){this.emitReserved("error",e,this.xhr),this.cleanup(!0)}},{key:"cleanup",value:function(e){if(null!=this.xhr){if(this.xhr.onreadystatechange=Fc,e)try{this.xhr.abort()}catch(e){}"undefined"!=typeof document&&delete n.requests[this.index],this.xhr=null}}},{key:"onLoad",value:function(){var e=this.xhr.responseText;null!==e&&(this.emitReserved("data",e),this.emitReserved("success"),this.cleanup())}},{key:"abort",value:function(){this.cleanup()}}]),n}(_c);function Bc(){for(var e in qc.requests)qc.requests.hasOwnProperty(e)&&qc.requests[e].abort()}qc.requestsCount=0,qc.requests={},"undefined"!=typeof document&&("function"==typeof attachEvent?attachEvent("onunload",Bc):"function"==typeof addEventListener&&addEventListener("onpagehide"in bc?"pagehide":"unload",Bc,!1));var Uc=function(){return"function"==typeof Promise&&"function"==typeof Promise.resolve?function(e){return Promise.resolve().then(e)}:function(e,t){return t(e,0)}}(),zc=bc.WebSocket||bc.MozWebSocket,Gc="undefined"!=typeof navigator&&"string"==typeof navigator.product&&"reactnative"===navigator.product.toLowerCase(),Hc=function(e){oe(n,e);var t=fe(n);function n(e){var r;return ee(this,n),(r=t.call(this,e)).supportsBinary=!e.forceBase64,r}return ne(n,[{key:"name",get:function(){return"websocket"}},{key:"doOpen",value:function(){if(this.check()){var e=this.uri(),t=this.opts.protocols,n=Gc?{}:wc(this.opts,"agent","perMessageDeflate","pfx","key","passphrase","cert","ca","ciphers","rejectUnauthorized","localAddress","protocolVersion","origin","maxPayload","family","checkServerIdentity");this.opts.extraHeaders&&(n.headers=this.opts.extraHeaders);try{this.ws=Gc?new zc(e,t,n):t?new zc(e,t):new zc(e)}catch(e){return this.emitReserved("error",e)}this.ws.binaryType=this.socket.binaryType,this.addEventListeners()}}},{key:"addEventListeners",value:function(){var e=this;this.ws.onopen=function(){e.opts.autoUnref&&e.ws._socket.unref(),e.onOpen()},this.ws.onclose=function(t){return e.onClose({description:"websocket connection closed",context:t})},this.ws.onmessage=function(t){return e.onData(t.data)},this.ws.onerror=function(t){return e.onError("websocket error",t)}}},{key:"write",value:function(e){var t=this;this.writable=!1;for(var n=function(){var n=r===e.length-1;ac(e[r],t.supportsBinary,(function(e){try{t.ws.send(e)}catch(e){}n&&Uc((function(){t.writable=!0,t.emitReserved("drain")}),t.setTimeoutFn)}))},r=0;r<e.length;r++)n()}},{key:"doClose",value:function(){void 0!==this.ws&&(this.ws.close(),this.ws=null)}},{key:"uri",value:function(){var e=this.opts.secure?"wss":"ws",t=this.query||{};return this.opts.timestampRequests&&(t[this.opts.timestampParam]=Pc()),this.supportsBinary||(t.b64=1),this.createUri(e,t)}},{key:"check",value:function(){return!!zc}}]),n}(Cc),Wc=function(e){oe(n,e);var t=fe(n);function n(){return ee(this,n),t.apply(this,arguments)}return ne(n,[{key:"name",get:function(){return"webtransport"}},{key:"doOpen",value:function(){var e=this;"function"==typeof WebTransport&&(this.transport=new WebTransport(this.createUri("https"),this.opts.transportOptions[this.name]),this.transport.closed.then((function(){e.onClose()})).catch((function(t){e.onError("webtransport error",t)})),this.transport.ready.then((function(){e.transport.createBidirectionalStream().then((function(t){var n=function(e,t){fc||(fc=new TextDecoder);var n=[],r=0,o=-1,i=!1;return new TransformStream({transform:function(a,s){for(n.push(a);;){if(0===r){if(yc(n)<1)break;var u=vc(n,1);i=128==(128&u[0]),r=(o=127&u[0])<126?3:126===o?1:2}else if(1===r){if(yc(n)<2)break;var c=vc(n,2);o=new DataView(c.buffer,c.byteOffset,c.length).getUint16(0),r=3}else if(2===r){if(yc(n)<8)break;var l=vc(n,8),f=new DataView(l.buffer,l.byteOffset,l.length),d=f.getUint32(0);if(d>Math.pow(2,21)-1){s.enqueue(nc);break}o=d*Math.pow(2,32)+f.getUint32(4),r=3}else{if(yc(n)<o)break;var h=vc(n,o);s.enqueue(hc(i?h:fc.decode(h),t)),r=0}if(0===o||o>e){s.enqueue(nc);break}}}})}(Number.MAX_SAFE_INTEGER,e.socket.binaryType),r=t.readable.pipeThrough(n).getReader(),o=new TransformStream({transform:function(e,t){!function(e,t){rc&&e.data instanceof Blob?e.data.arrayBuffer().then(uc).then(t):oc&&(e.data instanceof ArrayBuffer||ic(e.data))?t(uc(e.data)):ac(e,!1,(function(e){tc||(tc=new TextEncoder),t(tc.encode(e))}))}(e,(function(n){var r,o=n.length;if(o<126)r=new Uint8Array(1),new DataView(r.buffer).setUint8(0,o);else if(o<65536){r=new Uint8Array(3);var i=new DataView(r.buffer);i.setUint8(0,126),i.setUint16(1,o)}else{r=new Uint8Array(9);var a=new DataView(r.buffer);a.setUint8(0,127),a.setBigUint64(1,BigInt(o))}e.data&&"string"!=typeof e.data&&(r[0]|=128),t.enqueue(r),t.enqueue(n)}))}});o.readable.pipeTo(t.writable),e.writer=o.writable.getWriter(),function t(){r.read().then((function(n){n.done||(e.onPacket(n.value),t())})).catch((function(e){}))}();var i={type:"open"};e.query.sid&&(i.data='{"sid":"'.concat(e.query.sid,'"}')),e.writer.write(i).then((function(){return e.onOpen()}))}))})))}},{key:"write",value:function(e){var t=this;this.writable=!1;for(var n=function(){var n=r===e.length-1;t.writer.write(e[r]).then((function(){n&&Uc((function(){t.writable=!0,t.emitReserved("drain")}),t.setTimeoutFn)}))},r=0;r<e.length;r++)n()}},{key:"doClose",value:function(){var e;null===(e=this.transport)||void 0===e||e.close()}}]),n}(Cc),Vc={websocket:Hc,webtransport:Wc,polling:Dc},$c=/^(?:(?![^:@\/?#]+:[^:@\/]*@)(http|https|ws|wss):\/\/)?((?:(([^:@\/?#]*)(?::([^:@\/?#]*))?)?@)?((?:[a-f0-9]{0,4}:){2,7}[a-f0-9]{0,4}|[^:\/?#]*)(?::(\d*))?)(((\/(?:[^?#](?![^?#\/]*\.[^?#\/.]+(?:[?#]|$)))*\/?)?([^?#\/]*))(?:\?([^#]*))?(?:#(.*))?)/,Jc=["source","protocol","authority","userInfo","user","password","host","port","relative","path","directory","file","query","anchor"];function Kc(e){var t,n,r=e,o=e.indexOf("["),i=e.indexOf("]");-1!=o&&-1!=i&&(e=e.substring(0,o)+e.substring(o,i).replace(/:/g,";")+e.substring(i,e.length));for(var a,s=$c.exec(e||""),u={},c=14;c--;)u[Jc[c]]=s[c]||"";return-1!=o&&-1!=i&&(u.source=r,u.host=u.host.substring(1,u.host.length-1).replace(/;/g,":"),u.authority=u.authority.replace("[","").replace("]","").replace(/;/g,":"),u.ipv6uri=!0),u.pathNames=(n=(t=u.path).replace(/\/{2,9}/g,"/").split("/"),"/"!=t.slice(0,1)&&0!==t.length||n.splice(0,1),"/"==t.slice(-1)&&n.splice(n.length-1,1),n),u.queryKey=(a={},u.query.replace(/(?:^|&)([^&=]*)=?([^&]*)/g,(function(e,t,n){t&&(a[t]=n)})),a),u}var Yc=function(e){oe(n,e);var t=fe(n);function n(e){var r,o=arguments.length>1&&void 0!==arguments[1]?arguments[1]:{};return ee(this,n),(r=t.call(this)).binaryType="arraybuffer",r.writeBuffer=[],e&&"object"===Z(e)&&(o=e,e=null),e?(e=Kc(e),o.hostname=e.host,o.secure="https"===e.protocol||"wss"===e.protocol,o.port=e.port,e.query&&(o.query=e.query)):o.host&&(o.hostname=Kc(o.host).host),kc(le(r),o),r.secure=null!=o.secure?o.secure:"undefined"!=typeof location&&"https:"===location.protocol,o.hostname&&!o.port&&(o.port=r.secure?"443":"80"),r.hostname=o.hostname||("undefined"!=typeof location?location.hostname:"localhost"),r.port=o.port||("undefined"!=typeof location&&location.port?location.port:r.secure?"443":"80"),r.transports=o.transports||["polling","websocket","webtransport"],r.writeBuffer=[],r.prevBufferLen=0,r.opts=Object.assign({path:"/engine.io",agent:!1,withCredentials:!1,upgrade:!0,timestampParam:"t",rememberUpgrade:!1,addTrailingSlash:!0,rejectUnauthorized:!0,perMessageDeflate:{threshold:1024},transportOptions:{},closeOnBeforeunload:!1},o),r.opts.path=r.opts.path.replace(/\/$/,"")+(r.opts.addTrailingSlash?"/":""),"string"==typeof r.opts.query&&(r.opts.query=function(e){for(var t={},n=e.split("&"),r=0,o=n.length;r<o;r++){var i=n[r].split("=");t[decodeURIComponent(i[0])]=decodeURIComponent(i[1])}return t}(r.opts.query)),r.id=null,r.upgrades=null,r.pingInterval=null,r.pingTimeout=null,r.pingTimeoutTimer=null,"function"==typeof addEventListener&&(r.opts.closeOnBeforeunload&&(r.beforeunloadEventListener=function(){r.transport&&(r.transport.removeAllListeners(),r.transport.close())},addEventListener("beforeunload",r.beforeunloadEventListener,!1)),"localhost"!==r.hostname&&(r.offlineEventListener=function(){r.onClose("transport close",{description:"network connection lost"})},addEventListener("offline",r.offlineEventListener,!1))),r.open(),r}return ne(n,[{key:"createTransport",value:function(e){var t=Object.assign({},this.opts.query);t.EIO=4,t.transport=e,this.id&&(t.sid=this.id);var n=Object.assign({},this.opts,{query:t,socket:this,hostname:this.hostname,secure:this.secure,port:this.port},this.opts.transportOptions[e]);return new Vc[e](n)}},{key:"open",value:function(){var e,t=this;if(this.opts.rememberUpgrade&&n.priorWebsocketSuccess&&-1!==this.transports.indexOf("websocket"))e="websocket";else{if(0===this.transports.length)return void this.setTimeoutFn((function(){t.emitReserved("error","No transports available")}),0);e=this.transports[0]}this.readyState="opening";try{e=this.createTransport(e)}catch(e){return this.transports.shift(),void this.open()}e.open(),this.setTransport(e)}},{key:"setTransport",value:function(e){var t=this;this.transport&&this.transport.removeAllListeners(),this.transport=e,e.on("drain",this.onDrain.bind(this)).on("packet",this.onPacket.bind(this)).on("error",this.onError.bind(this)).on("close",(function(e){return t.onClose("transport close",e)}))}},{key:"probe",value:function(e){var t=this,r=this.createTransport(e),o=!1;n.priorWebsocketSuccess=!1;var i=function(){o||(r.send([{type:"ping",data:"probe"}]),r.once("packet",(function(e){if(!o)if("pong"===e.type&&"probe"===e.data){if(t.upgrading=!0,t.emitReserved("upgrading",r),!r)return;n.priorWebsocketSuccess="websocket"===r.name,t.transport.pause((function(){o||"closed"!==t.readyState&&(f(),t.setTransport(r),r.send([{type:"upgrade"}]),t.emitReserved("upgrade",r),r=null,t.upgrading=!1,t.flush())}))}else{var i=new Error("probe error");i.transport=r.name,t.emitReserved("upgradeError",i)}})))};function a(){o||(o=!0,f(),r.close(),r=null)}var s=function(e){var n=new Error("probe error: "+e);n.transport=r.name,a(),t.emitReserved("upgradeError",n)};function u(){s("transport closed")}function c(){s("socket closed")}function l(e){r&&e.name!==r.name&&a()}var f=function(){r.removeListener("open",i),r.removeListener("error",s),r.removeListener("close",u),t.off("close",c),t.off("upgrading",l)};r.once("open",i),r.once("error",s),r.once("close",u),this.once("close",c),this.once("upgrading",l),-1!==this.upgrades.indexOf("webtransport")&&"webtransport"!==e?this.setTimeoutFn((function(){o||r.open()}),200):r.open()}},{key:"onOpen",value:function(){if(this.readyState="open",n.priorWebsocketSuccess="websocket"===this.transport.name,this.emitReserved("open"),this.flush(),"open"===this.readyState&&this.opts.upgrade)for(var e=0,t=this.upgrades.length;e<t;e++)this.probe(this.upgrades[e])}},{key:"onPacket",value:function(e){if("opening"===this.readyState||"open"===this.readyState||"closing"===this.readyState)switch(this.emitReserved("packet",e),this.emitReserved("heartbeat"),this.resetPingTimeout(),e.type){case"open":this.onHandshake(JSON.parse(e.data));break;case"ping":this.sendPacket("pong"),this.emitReserved("ping"),this.emitReserved("pong");break;case"error":var t=new Error("server error");t.code=e.data,this.onError(t);break;case"message":this.emitReserved("data",e.data),this.emitReserved("message",e.data)}}},{key:"onHandshake",value:function(e){this.emitReserved("handshake",e),this.id=e.sid,this.transport.query.sid=e.sid,this.upgrades=this.filterUpgrades(e.upgrades),this.pingInterval=e.pingInterval,this.pingTimeout=e.pingTimeout,this.maxPayload=e.maxPayload,this.onOpen(),"closed"!==this.readyState&&this.resetPingTimeout()}},{key:"resetPingTimeout",value:function(){var e=this;this.clearTimeoutFn(this.pingTimeoutTimer),this.pingTimeoutTimer=this.setTimeoutFn((function(){e.onClose("ping timeout")}),this.pingInterval+this.pingTimeout),this.opts.autoUnref&&this.pingTimeoutTimer.unref()}},{key:"onDrain",value:function(){this.writeBuffer.splice(0,this.prevBufferLen),this.prevBufferLen=0,0===this.writeBuffer.length?this.emitReserved("drain"):this.flush()}},{key:"flush",value:function(){if("closed"!==this.readyState&&this.transport.writable&&!this.upgrading&&this.writeBuffer.length){var e=this.getWritablePackets();this.transport.send(e),this.prevBufferLen=e.length,this.emitReserved("flush")}}},{key:"getWritablePackets",value:function(){if(!(this.maxPayload&&"polling"===this.transport.name&&this.writeBuffer.length>1))return this.writeBuffer;for(var e,t=1,n=0;n<this.writeBuffer.length;n++){var r=this.writeBuffer[n].data;if(r&&(t+="string"==typeof(e=r)?function(e){for(var t=0,n=0,r=0,o=e.length;r<o;r++)(t=e.charCodeAt(r))<128?n+=1:t<2048?n+=2:t<55296||t>=57344?n+=3:(r++,n+=4);return n}(e):Math.ceil(1.33*(e.byteLength||e.size))),n>0&&t>this.maxPayload)return this.writeBuffer.slice(0,n);t+=2}return this.writeBuffer}},{key:"write",value:function(e,t,n){return this.sendPacket("message",e,t,n),this}},{key:"send",value:function(e,t,n){return this.sendPacket("message",e,t,n),this}},{key:"sendPacket",value:function(e,t,n,r){if("function"==typeof t&&(r=t,t=void 0),"function"==typeof n&&(r=n,n=null),"closing"!==this.readyState&&"closed"!==this.readyState){(n=n||{}).compress=!1!==n.compress;var o={type:e,data:t,options:n};this.emitReserved("packetCreate",o),this.writeBuffer.push(o),r&&this.once("flush",r),this.flush()}}},{key:"close",value:function(){var e=this,t=function(){e.onClose("forced close"),e.transport.close()},n=function n(){e.off("upgrade",n),e.off("upgradeError",n),t()},r=function(){e.once("upgrade",n),e.once("upgradeError",n)};return"opening"!==this.readyState&&"open"!==this.readyState||(this.readyState="closing",this.writeBuffer.length?this.once("drain",(function(){e.upgrading?r():t()})):this.upgrading?r():t()),this}},{key:"onError",value:function(e){n.priorWebsocketSuccess=!1,this.emitReserved("error",e),this.onClose("transport error",e)}},{key:"onClose",value:function(e,t){"opening"!==this.readyState&&"open"!==this.readyState&&"closing"!==this.readyState||(this.clearTimeoutFn(this.pingTimeoutTimer),this.transport.removeAllListeners("close"),this.transport.close(),this.transport.removeAllListeners(),"function"==typeof removeEventListener&&(removeEventListener("beforeunload",this.beforeunloadEventListener,!1),removeEventListener("offline",this.offlineEventListener,!1)),this.readyState="closed",this.id=null,this.emitReserved("close",e,t),this.writeBuffer=[],this.prevBufferLen=0)}},{key:"filterUpgrades",value:function(e){for(var t=[],n=0,r=e.length;n<r;n++)~this.transports.indexOf(e[n])&&t.push(e[n]);return t}}]),n}(_c);Yc.protocol=4;var Zc="function"==typeof ArrayBuffer,Xc=function(e){return"function"==typeof ArrayBuffer.isView?ArrayBuffer.isView(e):e.buffer instanceof ArrayBuffer},Qc=Object.prototype.toString,el="function"==typeof Blob||"undefined"!=typeof Blob&&"[object BlobConstructor]"===Qc.call(Blob),tl="function"==typeof File||"undefined"!=typeof File&&"[object FileConstructor]"===Qc.call(File);function nl(e){return Zc&&(e instanceof ArrayBuffer||Xc(e))||el&&e instanceof Blob||tl&&e instanceof File}function rl(e,t){if(!e||"object"!==Z(e))return!1;if(Array.isArray(e)){for(var n=0,r=e.length;n<r;n++)if(rl(e[n]))return!0;return!1}if(nl(e))return!0;if(e.toJSON&&"function"==typeof e.toJSON&&1===arguments.length)return rl(e.toJSON(),!0);for(var o in e)if(Object.prototype.hasOwnProperty.call(e,o)&&rl(e[o]))return!0;return!1}function ol(e){var t=[],n=e;return n.data=il(e.data,t),n.attachments=t.length,{packet:n,buffers:t}}function il(e,t){if(!e)return e;if(nl(e)){var n={_placeholder:!0,num:t.length};return t.push(e),n}if(Array.isArray(e)){for(var r=new Array(e.length),o=0;o<e.length;o++)r[o]=il(e[o],t);return r}if("object"===Z(e)&&!(e instanceof Date)){var i={};for(var a in e)Object.prototype.hasOwnProperty.call(e,a)&&(i[a]=il(e[a],t));return i}return e}function al(e,t){return e.data=sl(e.data,t),delete e.attachments,e}function sl(e,t){if(!e)return e;if(e&&!0===e._placeholder){if("number"==typeof e.num&&e.num>=0&&e.num<t.length)return t[e.num];throw new Error("illegal attachments")}if(Array.isArray(e))for(var n=0;n<e.length;n++)e[n]=sl(e[n],t);else if("object"===Z(e))for(var r in e)Object.prototype.hasOwnProperty.call(e,r)&&(e[r]=sl(e[r],t));return e}var ul,cl=["connect","connect_error","disconnect","disconnecting","newListener","removeListener"];!function(e){e[e.CONNECT=0]="CONNECT",e[e.DISCONNECT=1]="DISCONNECT",e[e.EVENT=2]="EVENT",e[e.ACK=3]="ACK",e[e.CONNECT_ERROR=4]="CONNECT_ERROR",e[e.BINARY_EVENT=5]="BINARY_EVENT",e[e.BINARY_ACK=6]="BINARY_ACK"}(ul||(ul={}));var ll=function(){function e(t){ee(this,e),this.replacer=t}return ne(e,[{key:"encode",value:function(e){return e.type!==ul.EVENT&&e.type!==ul.ACK||!rl(e)?[this.encodeAsString(e)]:this.encodeAsBinary({type:e.type===ul.EVENT?ul.BINARY_EVENT:ul.BINARY_ACK,nsp:e.nsp,data:e.data,id:e.id})}},{key:"encodeAsString",value:function(e){var t=""+e.type;return e.type!==ul.BINARY_EVENT&&e.type!==ul.BINARY_ACK||(t+=e.attachments+"-"),e.nsp&&"/"!==e.nsp&&(t+=e.nsp+","),null!=e.id&&(t+=e.id),null!=e.data&&(t+=JSON.stringify(e.data,this.replacer)),t}},{key:"encodeAsBinary",value:function(e){var t=ol(e),n=this.encodeAsString(t.packet),r=t.buffers;return r.unshift(n),r}}]),e}();function fl(e){return"[object Object]"===Object.prototype.toString.call(e)}var dl=function(e){oe(n,e);var t=fe(n);function n(e){var r;return ee(this,n),(r=t.call(this)).reviver=e,r}return ne(n,[{key:"add",value:function(e){var t;if("string"==typeof e){if(this.reconstructor)throw new Error("got plaintext data when reconstructing a packet");var r=(t=this.decodeString(e)).type===ul.BINARY_EVENT;r||t.type===ul.BINARY_ACK?(t.type=r?ul.EVENT:ul.ACK,this.reconstructor=new hl(t),0===t.attachments&&de(ie(n.prototype),"emitReserved",this).call(this,"decoded",t)):de(ie(n.prototype),"emitReserved",this).call(this,"decoded",t)}else{if(!nl(e)&&!e.base64)throw new Error("Unknown type: "+e);if(!this.reconstructor)throw new Error("got binary data when not reconstructing a packet");(t=this.reconstructor.takeBinaryData(e))&&(this.reconstructor=null,de(ie(n.prototype),"emitReserved",this).call(this,"decoded",t))}}},{key:"decodeString",value:function(e){var t=0,r={type:Number(e.charAt(0))};if(void 0===ul[r.type])throw new Error("unknown packet type "+r.type);if(r.type===ul.BINARY_EVENT||r.type===ul.BINARY_ACK){for(var o=t+1;"-"!==e.charAt(++t)&&t!=e.length;);var i=e.substring(o,t);if(i!=Number(i)||"-"!==e.charAt(t))throw new Error("Illegal attachments");r.attachments=Number(i)}if("/"===e.charAt(t+1)){for(var a=t+1;++t&&","!==e.charAt(t)&&t!==e.length;);r.nsp=e.substring(a,t)}else r.nsp="/";var s=e.charAt(t+1);if(""!==s&&Number(s)==s){for(var u=t+1;++t;){var c=e.charAt(t);if(null==c||Number(c)!=c){--t;break}if(t===e.length)break}r.id=Number(e.substring(u,t+1))}if(e.charAt(++t)){var l=this.tryParse(e.substr(t));if(!n.isPayloadValid(r.type,l))throw new Error("invalid payload");r.data=l}return r}},{key:"tryParse",value:function(e){try{return JSON.parse(e,this.reviver)}catch(e){return!1}}},{key:"destroy",value:function(){this.reconstructor&&(this.reconstructor.finishedReconstruction(),this.reconstructor=null)}}],[{key:"isPayloadValid",value:function(e,t){switch(e){case ul.CONNECT:return fl(t);case ul.DISCONNECT:return void 0===t;case ul.CONNECT_ERROR:return"string"==typeof t||fl(t);case ul.EVENT:case ul.BINARY_EVENT:return Array.isArray(t)&&("number"==typeof t[0]||"string"==typeof t[0]&&-1===cl.indexOf(t[0]));case ul.ACK:case ul.BINARY_ACK:return Array.isArray(t)}}}]),n}(_c),hl=function(){function e(t){ee(this,e),this.packet=t,this.buffers=[],this.reconPack=t}return ne(e,[{key:"takeBinaryData",value:function(e){if(this.buffers.push(e),this.buffers.length===this.reconPack.attachments){var t=al(this.reconPack,this.buffers);return this.finishedReconstruction(),t}return null}},{key:"finishedReconstruction",value:function(){this.reconPack=null,this.buffers=[]}}]),e}(),pl={__proto__:null,protocol:5,get PacketType(){return ul},Encoder:ll,Decoder:dl};function ml(e,t,n){return e.on(t,n),function(){e.off(t,n)}}var gl=Object.freeze({connect:1,connect_error:1,disconnect:1,disconnecting:1,newListener:1,removeListener:1}),yl=function(e){oe(n,e);var t=fe(n);function n(e,r,o){var i;return ee(this,n),(i=t.call(this)).connected=!1,i.recovered=!1,i.receiveBuffer=[],i.sendBuffer=[],i._queue=[],i._queueSeq=0,i.ids=0,i.acks={},i.flags={},i.io=e,i.nsp=r,o&&o.auth&&(i.auth=o.auth),i._opts=Object.assign({},o),i.io._autoConnect&&i.open(),i}return ne(n,[{key:"disconnected",get:function(){return!this.connected}},{key:"subEvents",value:function(){if(!this.subs){var e=this.io;this.subs=[ml(e,"open",this.onopen.bind(this)),ml(e,"packet",this.onpacket.bind(this)),ml(e,"error",this.onerror.bind(this)),ml(e,"close",this.onclose.bind(this))]}}},{key:"active",get:function(){return!!this.subs}},{key:"connect",value:function(){return this.connected||(this.subEvents(),this.io._reconnecting||this.io.open(),"open"===this.io._readyState&&this.onopen()),this}},{key:"open",value:function(){return this.connect()}},{key:"send",value:function(){for(var e=arguments.length,t=new Array(e),n=0;n<e;n++)t[n]=arguments[n];return t.unshift("message"),this.emit.apply(this,t),this}},{key:"emit",value:function(e){if(gl.hasOwnProperty(e))throw new Error('"'+e.toString()+'" is a reserved event name');for(var t=arguments.length,n=new Array(t>1?t-1:0),r=1;r<t;r++)n[r-1]=arguments[r];if(n.unshift(e),this._opts.retries&&!this.flags.fromQueue&&!this.flags.volatile)return this._addToQueue(n),this;var o={type:ul.EVENT,data:n,options:{}};if(o.options.compress=!1!==this.flags.compress,"function"==typeof n[n.length-1]){var i=this.ids++,a=n.pop();this._registerAckCallback(i,a),o.id=i}return this.flags.volatile&&(!(this.io.engine&&this.io.engine.transport&&this.io.engine.transport.writable)||!this.connected)||(this.connected?(this.notifyOutgoingListeners(o),this.packet(o)):this.sendBuffer.push(o)),this.flags={},this}},{key:"_registerAckCallback",value:function(e,t){var n,r=this,o=null!==(n=this.flags.timeout)&&void 0!==n?n:this._opts.ackTimeout;if(void 0!==o){var i=this.io.setTimeoutFn((function(){delete r.acks[e];for(var n=0;n<r.sendBuffer.length;n++)r.sendBuffer[n].id===e&&r.sendBuffer.splice(n,1);t.call(r,new Error("operation has timed out"))}),o);this.acks[e]=function(){r.io.clearTimeoutFn(i);for(var e=arguments.length,n=new Array(e),o=0;o<e;o++)n[o]=arguments[o];t.apply(r,[null].concat(n))}}else this.acks[e]=t}},{key:"emitWithAck",value:function(e){for(var t=this,n=arguments.length,r=new Array(n>1?n-1:0),o=1;o<n;o++)r[o-1]=arguments[o];var i=void 0!==this.flags.timeout||void 0!==this._opts.ackTimeout;return new Promise((function(n,o){r.push((function(e,t){return i?e?o(e):n(t):n(e)})),t.emit.apply(t,[e].concat(r))}))}},{key:"_addToQueue",value:function(e){var t,n=this;"function"==typeof e[e.length-1]&&(t=e.pop());var r={id:this._queueSeq++,tryCount:0,pending:!1,args:e,flags:Object.assign({fromQueue:!0},this.flags)};e.push((function(e){if(r===n._queue[0]){if(null!==e)r.tryCount>n._opts.retries&&(n._queue.shift(),t&&t(e));else if(n._queue.shift(),t){for(var o=arguments.length,i=new Array(o>1?o-1:0),a=1;a<o;a++)i[a-1]=arguments[a];t.apply(void 0,[null].concat(i))}return r.pending=!1,n._drainQueue()}})),this._queue.push(r),this._drainQueue()}},{key:"_drainQueue",value:function(){if(this.connected&&0!==this._queue.length){var e=this._queue[0];e.pending&&!(arguments.length>0&&void 0!==arguments[0]&&arguments[0])||(e.pending=!0,e.tryCount++,this.flags=e.flags,this.emit.apply(this,e.args))}}},{key:"packet",value:function(e){e.nsp=this.nsp,this.io._packet(e)}},{key:"onopen",value:function(){var e=this;"function"==typeof this.auth?this.auth((function(t){e._sendConnectPacket(t)})):this._sendConnectPacket(this.auth)}},{key:"_sendConnectPacket",value:function(e){this.packet({type:ul.CONNECT,data:this._pid?Object.assign({pid:this._pid,offset:this._lastOffset},e):e})}},{key:"onerror",value:function(e){this.connected||this.emitReserved("connect_error",e)}},{key:"onclose",value:function(e,t){this.connected=!1,delete this.id,this.emitReserved("disconnect",e,t)}},{key:"onpacket",value:function(e){if(e.nsp===this.nsp)switch(e.type){case ul.CONNECT:e.data&&e.data.sid?this.onconnect(e.data.sid,e.data.pid):this.emitReserved("connect_error",new Error("It seems you are trying to reach a Socket.IO server in v2.x with a v3.x client, but they are not compatible (more information here: https://socket.io/docs/v3/migrating-from-2-x-to-3-0/)"));break;case ul.EVENT:case ul.BINARY_EVENT:this.onevent(e);break;case ul.ACK:case ul.BINARY_ACK:this.onack(e);break;case ul.DISCONNECT:this.ondisconnect();break;case ul.CONNECT_ERROR:this.destroy();var t=new Error(e.data.message);t.data=e.data.data,this.emitReserved("connect_error",t)}}},{key:"onevent",value:function(e){var t=e.data||[];null!=e.id&&t.push(this.ack(e.id)),this.connected?this.emitEvent(t):this.receiveBuffer.push(Object.freeze(t))}},{key:"emitEvent",value:function(e){if(this._anyListeners&&this._anyListeners.length){var t,r=we(this._anyListeners.slice());try{for(r.s();!(t=r.n()).done;)t.value.apply(this,e)}catch(e){r.e(e)}finally{r.f()}}de(ie(n.prototype),"emit",this).apply(this,e),this._pid&&e.length&&"string"==typeof e[e.length-1]&&(this._lastOffset=e[e.length-1])}},{key:"ack",value:function(e){var t=this,n=!1;return function(){if(!n){n=!0;for(var r=arguments.length,o=new Array(r),i=0;i<r;i++)o[i]=arguments[i];t.packet({type:ul.ACK,id:e,data:o})}}}},{key:"onack",value:function(e){var t=this.acks[e.id];"function"==typeof t&&(t.apply(this,e.data),delete this.acks[e.id])}},{key:"onconnect",value:function(e,t){this.id=e,this.recovered=t&&this._pid===t,this._pid=t,this.connected=!0,this.emitBuffered(),this.emitReserved("connect"),this._drainQueue(!0)}},{key:"emitBuffered",value:function(){var e=this;this.receiveBuffer.forEach((function(t){return e.emitEvent(t)})),this.receiveBuffer=[],this.sendBuffer.forEach((function(t){e.notifyOutgoingListeners(t),e.packet(t)})),this.sendBuffer=[]}},{key:"ondisconnect",value:function(){this.destroy(),this.onclose("io server disconnect")}},{key:"destroy",value:function(){this.subs&&(this.subs.forEach((function(e){return e()})),this.subs=void 0),this.io._destroy(this)}},{key:"disconnect",value:function(){return this.connected&&this.packet({type:ul.DISCONNECT}),this.destroy(),this.connected&&this.onclose("io client disconnect"),this}},{key:"close",value:function(){return this.disconnect()}},{key:"compress",value:function(e){return this.flags.compress=e,this}},{key:"volatile",get:function(){return this.flags.volatile=!0,this}},{key:"timeout",value:function(e){return this.flags.timeout=e,this}},{key:"onAny",value:function(e){return this._anyListeners=this._anyListeners||[],this._anyListeners.push(e),this}},{key:"prependAny",value:function(e){return this._anyListeners=this._anyListeners||[],this._anyListeners.unshift(e),this}},{key:"offAny",value:function(e){if(!this._anyListeners)return this;if(e){for(var t=this._anyListeners,n=0;n<t.length;n++)if(e===t[n])return t.splice(n,1),this}else this._anyListeners=[];return this}},{key:"listenersAny",value:function(){return this._anyListeners||[]}},{key:"onAnyOutgoing",value:function(e){return this._anyOutgoingListeners=this._anyOutgoingListeners||[],this._anyOutgoingListeners.push(e),this}},{key:"prependAnyOutgoing",value:function(e){return this._anyOutgoingListeners=this._anyOutgoingListeners||[],this._anyOutgoingListeners.unshift(e),this}},{key:"offAnyOutgoing",value:function(e){if(!this._anyOutgoingListeners)return this;if(e){for(var t=this._anyOutgoingListeners,n=0;n<t.length;n++)if(e===t[n])return t.splice(n,1),this}else this._anyOutgoingListeners=[];return this}},{key:"listenersAnyOutgoing",value:function(){return this._anyOutgoingListeners||[]}},{key:"notifyOutgoingListeners",value:function(e){if(this._anyOutgoingListeners&&this._anyOutgoingListeners.length){var t,n=we(this._anyOutgoingListeners.slice());try{for(n.s();!(t=n.n()).done;)t.value.apply(this,e.data)}catch(e){n.e(e)}finally{n.f()}}}}]),n}(_c);function vl(e){this.ms=(e=e||{}).min||100,this.max=e.max||1e4,this.factor=e.factor||2,this.jitter=e.jitter>0&&e.jitter<=1?e.jitter:0,this.attempts=0}vl.prototype.duration=function(){var e=this.ms*Math.pow(this.factor,this.attempts++);if(this.jitter){var t=Math.random(),n=Math.floor(t*this.jitter*e);e=0==(1&Math.floor(10*t))?e-n:e+n}return 0|Math.min(e,this.max)},vl.prototype.reset=function(){this.attempts=0},vl.prototype.setMin=function(e){this.ms=e},vl.prototype.setMax=function(e){this.max=e},vl.prototype.setJitter=function(e){this.jitter=e};var _l=function(e){oe(n,e);var t=fe(n);function n(e,r){var o,i;ee(this,n),(o=t.call(this)).nsps={},o.subs=[],e&&"object"===Z(e)&&(r=e,e=void 0),(r=r||{}).path=r.path||"/socket.io",o.opts=r,kc(le(o),r),o.reconnection(!1!==r.reconnection),o.reconnectionAttempts(r.reconnectionAttempts||Infinity),o.reconnectionDelay(r.reconnectionDelay||1e3),o.reconnectionDelayMax(r.reconnectionDelayMax||5e3),o.randomizationFactor(null!==(i=r.randomizationFactor)&&void 0!==i?i:.5),o.backoff=new vl({min:o.reconnectionDelay(),max:o.reconnectionDelayMax(),jitter:o.randomizationFactor()}),o.timeout(null==r.timeout?2e4:r.timeout),o._readyState="closed",o.uri=e;var a=r.parser||pl;return o.encoder=new a.Encoder,o.decoder=new a.Decoder,o._autoConnect=!1!==r.autoConnect,o._autoConnect&&o.open(),o}return ne(n,[{key:"reconnection",value:function(e){return arguments.length?(this._reconnection=!!e,this):this._reconnection}},{key:"reconnectionAttempts",value:function(e){return void 0===e?this._reconnectionAttempts:(this._reconnectionAttempts=e,this)}},{key:"reconnectionDelay",value:function(e){var t;return void 0===e?this._reconnectionDelay:(this._reconnectionDelay=e,null===(t=this.backoff)||void 0===t||t.setMin(e),this)}},{key:"randomizationFactor",value:function(e){var t;return void 0===e?this._randomizationFactor:(this._randomizationFactor=e,null===(t=this.backoff)||void 0===t||t.setJitter(e),this)}},{key:"reconnectionDelayMax",value:function(e){var t;return void 0===e?this._reconnectionDelayMax:(this._reconnectionDelayMax=e,null===(t=this.backoff)||void 0===t||t.setMax(e),this)}},{key:"timeout",value:function(e){return arguments.length?(this._timeout=e,this):this._timeout}},{key:"maybeReconnectOnOpen",value:function(){!this._reconnecting&&this._reconnection&&0===this.backoff.attempts&&this.reconnect()}},{key:"open",value:function(e){var t=this;if(~this._readyState.indexOf("open"))return this;this.engine=new Yc(this.uri,this.opts);var n=this.engine,r=this;this._readyState="opening",this.skipReconnect=!1;var o=ml(n,"open",(function(){r.onopen(),e&&e()})),i=function(n){t.cleanup(),t._readyState="closed",t.emitReserved("error",n),e?e(n):t.maybeReconnectOnOpen()},a=ml(n,"error",i);if(!1!==this._timeout){var s=this.setTimeoutFn((function(){o(),i(new Error("timeout")),n.close()}),this._timeout);this.opts.autoUnref&&s.unref(),this.subs.push((function(){t.clearTimeoutFn(s)}))}return this.subs.push(o),this.subs.push(a),this}},{key:"connect",value:function(e){return this.open(e)}},{key:"onopen",value:function(){this.cleanup(),this._readyState="open",this.emitReserved("open");var e=this.engine;this.subs.push(ml(e,"ping",this.onping.bind(this)),ml(e,"data",this.ondata.bind(this)),ml(e,"error",this.onerror.bind(this)),ml(e,"close",this.onclose.bind(this)),ml(this.decoder,"decoded",this.ondecoded.bind(this)))}},{key:"onping",value:function(){this.emitReserved("ping")}},{key:"ondata",value:function(e){try{this.decoder.add(e)}catch(e){this.onclose("parse error",e)}}},{key:"ondecoded",value:function(e){var t=this;Uc((function(){t.emitReserved("packet",e)}),this.setTimeoutFn)}},{key:"onerror",value:function(e){this.emitReserved("error",e)}},{key:"socket",value:function(e,t){var n=this.nsps[e];return n?this._autoConnect&&!n.active&&n.connect():(n=new yl(this,e,t),this.nsps[e]=n),n}},{key:"_destroy",value:function(e){for(var t=0,n=Object.keys(this.nsps);t<n.length;t++)if(this.nsps[n[t]].active)return;this._close()}},{key:"_packet",value:function(e){for(var t=this.encoder.encode(e),n=0;n<t.length;n++)this.engine.write(t[n],e.options)}},{key:"cleanup",value:function(){this.subs.forEach((function(e){return e()})),this.subs.length=0,this.decoder.destroy()}},{key:"_close",value:function(){this.skipReconnect=!0,this._reconnecting=!1,this.onclose("forced close"),this.engine&&this.engine.close()}},{key:"disconnect",value:function(){return this._close()}},{key:"onclose",value:function(e,t){this.cleanup(),this.backoff.reset(),this._readyState="closed",this.emitReserved("close",e,t),this._reconnection&&!this.skipReconnect&&this.reconnect()}},{key:"reconnect",value:function(){var e=this;if(this._reconnecting||this.skipReconnect)return this;var t=this;if(this.backoff.attempts>=this._reconnectionAttempts)this.backoff.reset(),this.emitReserved("reconnect_failed"),this._reconnecting=!1;else{var n=this.backoff.duration();this._reconnecting=!0;var r=this.setTimeoutFn((function(){t.skipReconnect||(e.emitReserved("reconnect_attempt",t.backoff.attempts),t.skipReconnect||t.open((function(n){n?(t._reconnecting=!1,t.reconnect(),e.emitReserved("reconnect_error",n)):t.onreconnect()})))}),n);this.opts.autoUnref&&r.unref(),this.subs.push((function(){e.clearTimeoutFn(r)}))}}},{key:"onreconnect",value:function(){var e=this.backoff.attempts;this._reconnecting=!1,this.backoff.reset(),this.emitReserved("reconnect",e)}}]),n}(_c),bl={};function wl(e,t){"object"===Z(e)&&(t=e,e=void 0);var n,r=function(e){var t=arguments.length>1&&void 0!==arguments[1]?arguments[1]:"",n=arguments.length>2?arguments[2]:void 0,r=e;n=n||"undefined"!=typeof location&&location,null==e&&(e=n.protocol+"//"+n.host),"string"==typeof e&&("/"===e.charAt(0)&&(e="/"===e.charAt(1)?n.protocol+e:n.host+e),/^(https?|wss?):\/\//.test(e)||(e=void 0!==n?n.protocol+"//"+e:"https://"+e),r=Kc(e)),r.port||(/^(http|ws)$/.test(r.protocol)?r.port="80":/^(http|ws)s$/.test(r.protocol)&&(r.port="443")),r.path=r.path||"/";var o=-1!==r.host.indexOf(":")?"["+r.host+"]":r.host;return r.id=r.protocol+"://"+o+":"+r.port+t,r.href=r.protocol+"://"+o+(n&&n.port===r.port?"":":"+r.port),r}(e,(t=t||{}).path||"/socket.io"),o=r.source,i=r.id;return t.forceNew||t["force new connection"]||!1===t.multiplex||bl[i]&&r.path in bl[i].nsps?n=new _l(o,t):(bl[i]||(bl[i]=new _l(o,t)),n=bl[i]),r.query&&!t.query&&(t.query=r.queryKey),n.socket(r.path,t)}function Sl(){}function xl(){xl.init.call(this)}function kl(e){return void 0===e._maxListeners?xl.defaultMaxListeners:e._maxListeners}function El(e,t,n,r){var o,i,a;if("function"!=typeof n)throw new TypeError('"listener" argument must be a function');if((i=e._events)?(i.newListener&&(e.emit("newListener",t,n.listener?n.listener:n),i=e._events),a=i[t]):(i=e._events=new Sl,e._eventsCount=0),a){if("function"==typeof a?a=i[t]=r?[n,a]:[a,n]:r?a.unshift(n):a.push(n),!a.warned&&(o=kl(e))&&o>0&&a.length>o){a.warned=!0;var s=new Error("Possible EventEmitter memory leak detected. "+a.length+" "+t+" listeners added. 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i=Rf(n);i||n.corked||n.bufferProcessing||!n.bufferedRequest||Of(e,n),r?At(Cf,e,n,i,o):Cf(e,n,i,o)}}(t,e)},this.writecb=null,this.writelen=0,this.bufferedRequest=null,this.lastBufferedRequest=null,this.pendingcb=0,this.prefinished=!1,this.errorEmitted=!1,this.bufferedRequestCount=0,this.corkedRequestsFree=new Pf(this)}function Ef(e){if(!(this instanceof Ef||this instanceof Ff))return new Ef(e);this._writableState=new kf(e,this),this.writable=!0,e&&("function"==typeof e.write&&(this._write=e.write),"function"==typeof e.writev&&(this._writev=e.writev)),xl.call(this)}function Af(e,t,n,r,o,i,a){t.writelen=r,t.writecb=a,t.writing=!0,t.sync=!0,n?e._writev(o,t.onwrite):e._write(o,i,t.onwrite),t.sync=!1}function Cf(e,t,n,r){n||function(e,t){0===t.length&&t.needDrain&&(t.needDrain=!1,e.emit("drain"))}(e,t),t.pendingcb--,r(),If(e,t)}function Of(e,t){t.bufferProcessing=!0;var n=t.bufferedRequest;if(e._writev&&n&&n.next){var r=new Array(t.bufferedRequestCount),o=t.corkedRequestsFree;o.entry=n;for(var i=0;n;)r[i]=n,n=n.next,i+=1;Af(e,t,!0,t.length,r,"",o.finish),t.pendingcb++,t.lastBufferedRequest=null,o.next?(t.corkedRequestsFree=o.next,o.next=null):t.corkedRequestsFree=new Pf(t)}else{for(;n;){var a=n.chunk;if(Af(e,t,!1,t.objectMode?1:a.length,a,n.encoding,n.callback),n=n.next,t.writing)break}null===n&&(t.lastBufferedRequest=null)}t.bufferedRequestCount=0,t.bufferedRequest=n,t.bufferProcessing=!1}function Rf(e){return e.ending&&0===e.length&&null===e.bufferedRequest&&!e.finished&&!e.writing}function Nf(e,t){t.prefinished||(t.prefinished=!0,e.emit("prefinish"))}function If(e,t){var n=Rf(t);return n&&(0===t.pendingcb?(Nf(e,t),t.finished=!0,e.emit("finish")):Nf(e,t)),n}function Pf(e){var t=this;this.next=null,this.entry=null,this.finish=function(n){var r=t.entry;for(t.entry=null;r;){var o=r.callback;e.pendingcb--,o(n),r=r.next}e.corkedRequestsFree?e.corkedRequestsFree.next=t:e.corkedRequestsFree=t}}uf.prototype.read=function(e){af("read",e),e=parseInt(e,10);var t=this._readableState,n=e;if(0!==e&&(t.emittedReadable=!1),0===e&&t.needReadable&&(t.length>=t.highWaterMark||t.ended))return af("read: emitReadable",t.length,t.ended),0===t.length&&t.ended?_f(this):df(this),null;if(0===(e=ff(e,t))&&t.ended)return 0===t.length&&_f(this),null;var r,o=t.needReadable;return af("need readable",o),(0===t.length||t.length-e<t.highWaterMark)&&af("length less than watermark",o=!0),t.ended||t.reading?af("reading or ended",o=!1):o&&(af("do read"),t.reading=!0,t.sync=!0,0===t.length&&(t.needReadable=!0),this._read(t.highWaterMark),t.sync=!1,t.reading||(e=ff(n,t))),null===(r=e>0?vf(e,t):null)?(t.needReadable=!0,e=0):t.length-=e,0===t.length&&(t.ended||(t.needReadable=!0),n!==e&&t.ended&&_f(this)),null!==r&&this.emit("data",r),r},uf.prototype._read=function(e){this.emit("error",new Error("not implemented"))},uf.prototype.pipe=function(e,t){var n=this,r=this._readableState;switch(r.pipesCount){case 0:r.pipes=e;break;case 1:r.pipes=[r.pipes,e];break;default:r.pipes.push(e)}r.pipesCount+=1,af("pipe count=%d opts=%j",r.pipesCount,t);var o=t&&!1===t.end?c:a;function i(e){af("onunpipe"),e===n&&c()}function a(){af("onend"),e.end()}r.endEmitted?At(o):n.once("end",o),e.on("unpipe",i);var s=function(e){return function(){var t=e._readableState;af("pipeOnDrain",t.awaitDrain),t.awaitDrain&&t.awaitDrain--,0===t.awaitDrain&&e.listeners("data").length&&(t.flowing=!0,yf(e))}}(n);e.on("drain",s);var u=!1;function c(){af("cleanup"),e.removeListener("close",h),e.removeListener("finish",p),e.removeListener("drain",s),e.removeListener("error",d),e.removeListener("unpipe",i),n.removeListener("end",a),n.removeListener("end",c),n.removeListener("data",f),u=!0,!r.awaitDrain||e._writableState&&!e._writableState.needDrain||s()}var l=!1;function f(t){af("ondata"),l=!1,!1!==e.write(t)||l||((1===r.pipesCount&&r.pipes===e||r.pipesCount>1&&-1!==wf(r.pipes,e))&&!u&&(af("false write response, pause",n._readableState.awaitDrain),n._readableState.awaitDrain++,l=!0),n.pause())}function d(t){af("onerror",t),m(),e.removeListener("error",d),0===e.listeners("error").length&&e.emit("error",t)}function h(){e.removeListener("finish",p),m()}function p(){af("onfinish"),e.removeListener("close",h),m()}function m(){af("unpipe"),n.unpipe(e)}return n.on("data",f),function(e,t,n){if("function"==typeof e.prependListener)return e.prependListener(t,n);e._events&&e._events[t]?Array.isArray(e._events[t])?e._events[t].unshift(n):e._events[t]=[n,e._events[t]]:e.on(t,n)}(e,"error",d),e.once("close",h),e.once("finish",p),e.emit("pipe",n),r.flowing||(af("pipe resume"),n.resume()),e},uf.prototype.unpipe=function(e){var t=this._readableState;if(0===t.pipesCount)return this;if(1===t.pipesCount)return e&&e!==t.pipes||(e||(e=t.pipes),t.pipes=null,t.pipesCount=0,t.flowing=!1,e&&e.emit("unpipe",this)),this;if(!e){var n=t.pipes,r=t.pipesCount;t.pipes=null,t.pipesCount=0,t.flowing=!1;for(var o=0;o<r;o++)n[o].emit("unpipe",this);return this}var i=wf(t.pipes,e);return-1===i||(t.pipes.splice(i,1),t.pipesCount-=1,1===t.pipesCount&&(t.pipes=t.pipes[0]),e.emit("unpipe",this)),this},uf.prototype.addListener=uf.prototype.on=function(e,t){var n=xl.prototype.on.call(this,e,t);if("data"===e)!1!==this._readableState.flowing&&this.resume();else if("readable"===e){var r=this._readableState;r.endEmitted||r.readableListening||(r.readableListening=r.needReadable=!0,r.emittedReadable=!1,r.reading?r.length&&df(this):At(mf,this))}return n},uf.prototype.resume=function(){var e=this._readableState;return e.flowing||(af("resume"),e.flowing=!0,function(e,t){t.resumeScheduled||(t.resumeScheduled=!0,At(gf,e,t))}(this,e)),this},uf.prototype.pause=function(){return af("call pause flowing=%j",this._readableState.flowing),!1!==this._readableState.flowing&&(af("pause"),this._readableState.flowing=!1,this.emit("pause")),this},uf.prototype.wrap=function(e){var t=this._readableState,n=!1,r=this;for(var o in e.on("end",(function(){if(af("wrapped end"),t.decoder&&!t.ended){var e=t.decoder.end();e&&e.length&&r.push(e)}r.push(null)})),e.on("data",(function(o){af("wrapped data"),t.decoder&&(o=t.decoder.write(o)),t.objectMode&&null==o||(t.objectMode||o&&o.length)&&(r.push(o)||(n=!0,e.pause()))})),e)void 0===this[o]&&"function"==typeof e[o]&&(this[o]=function(t){return function(){return e[t].apply(e,arguments)}}(o));return function(t,n){for(var o=0,i=t.length;o<i;o++)e.on(a=t[o],r.emit.bind(r,a));var a}(["error","close","destroy","pause","resume"]),r._read=function(t){af("wrapped _read",t),n&&(n=!1,e.resume())},r},uf._fromList=vf,Ef.WritableState=kf,Rl(Ef,xl),kf.prototype.getBuffer=function(){for(var e=this.bufferedRequest,t=[];e;)t.push(e),e=e.next;return t},Ef.prototype.pipe=function(){this.emit("error",new Error("Cannot pipe, not readable"))},Ef.prototype.write=function(e,t,n){var r=this._writableState,o=!1;return"function"==typeof t&&(n=t,t=null),Xt.isBuffer(e)?t="buffer":t||(t=r.defaultEncoding),"function"!=typeof n&&(n=Sf),r.ended?function(e,t){var n=new Error("write after end");e.emit("error",n),At(t,n)}(this,n):function(e,t,n,r){var o=!0,i=!1;return null===n?i=new TypeError("May not write null values to stream"):Xt.isBuffer(n)||"string"==typeof n||void 0===n||t.objectMode||(i=new TypeError("Invalid non-string/buffer chunk")),i&&(e.emit("error",i),At(r,i),o=!1),o}(this,r,e,n)&&(r.pendingcb++,o=function(e,t,n,r,o){n=function(e,t,n){return e.objectMode||!1===e.decodeStrings||"string"!=typeof t||(t=Xt.from(t,n)),t}(t,n,r),Xt.isBuffer(n)&&(r="buffer");var i=t.objectMode?1:n.length;t.length+=i;var a=t.length<t.highWaterMark;if(a||(t.needDrain=!0),t.writing||t.corked){var s=t.lastBufferedRequest;t.lastBufferedRequest=new xf(n,r,o),s?s.next=t.lastBufferedRequest:t.bufferedRequest=t.lastBufferedRequest,t.bufferedRequestCount+=1}else Af(e,t,!1,i,n,r,o);return a}(this,r,e,t,n)),o},Ef.prototype.cork=function(){this._writableState.corked++},Ef.prototype.uncork=function(){var e=this._writableState;e.corked&&(e.corked--,e.writing||e.corked||e.finished||e.bufferProcessing||!e.bufferedRequest||Of(this,e))},Ef.prototype.setDefaultEncoding=function(e){if("string"==typeof e&&(e=e.toLowerCase()),!(["hex","utf8","utf-8","ascii","binary","base64","ucs2","ucs-2","utf16le","utf-16le","raw"].indexOf((e+"").toLowerCase())>-1))throw new TypeError("Unknown encoding: "+e);return this._writableState.defaultEncoding=e,this},Ef.prototype._write=function(e,t,n){n(new Error("not implemented"))},Ef.prototype._writev=null,Ef.prototype.end=function(e,t,n){var r=this._writableState;"function"==typeof e?(n=e,e=null,t=null):"function"==typeof t&&(n=t,t=null),null!=e&&this.write(e,t),r.corked&&(r.corked=1,this.uncork()),r.ending||r.finished||function(e,t,n){t.ending=!0,If(e,t),n&&(t.finished?At(n):e.once("finish",n)),t.ended=!0,e.writable=!1}(this,r,n)},Rl(Ff,uf);for(var Tf=Object.keys(Ef.prototype),Mf=0;Mf<Tf.length;Mf++){var jf=Tf[Mf];Ff.prototype[jf]||(Ff.prototype[jf]=Ef.prototype[jf])}function Ff(e){if(!(this instanceof Ff))return new Ff(e);uf.call(this,e),Ef.call(this,e),e&&!1===e.readable&&(this.readable=!1),e&&!1===e.writable&&(this.writable=!1),this.allowHalfOpen=!0,e&&!1===e.allowHalfOpen&&(this.allowHalfOpen=!1),this.once("end",Lf)}function Lf(){this.allowHalfOpen||this._writableState.ended||At(Df,this)}function Df(e){e.end()}function qf(e){this.afterTransform=function(t,n){return function(e,t,n){var r=e._transformState;r.transforming=!1;var o=r.writecb;if(!o)return e.emit("error",new Error("no writecb in Transform class"));r.writechunk=null,r.writecb=null,null!=n&&e.push(n),o(t);var i=e._readableState;i.reading=!1,(i.needReadable||i.length<i.highWaterMark)&&e._read(i.highWaterMark)}(e,t,n)},this.needTransform=!1,this.transforming=!1,this.writecb=null,this.writechunk=null,this.writeencoding=null}function Bf(e){if(!(this instanceof Bf))return new Bf(e);Ff.call(this,e),this._transformState=new qf(this);var t=this;this._readableState.needReadable=!0,this._readableState.sync=!1,e&&("function"==typeof e.transform&&(this._transform=e.transform),"function"==typeof e.flush&&(this._flush=e.flush)),this.once("prefinish",(function(){"function"==typeof this._flush?this._flush((function(e){Uf(t,e)})):Uf(t)}))}function Uf(e,t){if(t)return e.emit("error",t);var n=e._transformState;if(e._writableState.length)throw new Error("Calling transform done when ws.length != 0");if(n.transforming)throw new Error("Calling transform done when still transforming");return e.push(null)}function zf(e){if(!(this instanceof zf))return new zf(e);Bf.call(this,e)}function Gf(){xl.call(this)}function Hf(e){return e.replace(/%([0-9A-Fa-f]{2})/g,(function(e,t){return String.fromCharCode(parseInt(t,16))}))}function Wf(e,t){return String(t).replace(e,(function(e){var t=e.charCodeAt(0).toString(16).toUpperCase().padStart(2,"0");return"%".concat(t)}))}function Vf(e){return Wf(/[\n;\r\t=%&,\x00-\x1f\x7f-\xff]/g,e)}function $f(e){return Wf(/[\n\r\t%\x00-\x1f\x7f-\xff]/g,e)}function Jf(e){if(!e||!e.length||"."===e)return{};var t={};return e.replace(/\r?\n$/,"").split(";").forEach((function(e){var n,r=e.split("=",2);if(r[1]&&r[1].length){r[0]=r[0].trim();var o=t[r[0].trim()];o||(t[r[0]]=o=[]),(n=o).push.apply(n,me(r[1].split(",").map((function(e){return e.trim()})).map(Hf)))}})),t}function Kf(e){var t=e.split("\t").map((function(e){return"."===e||""===e?null:e}));return{seq_id:t[0]&&Hf(t[0]),source:t[1]&&Hf(t[1]),type:t[2]&&Hf(t[2]),start:null===t[3]?null:parseInt(t[3],10),end:null===t[4]?null:parseInt(t[4],10),score:null===t[5]?null:parseFloat(t[5]),strand:t[6],phase:t[7],attributes:null===t[8]?null:Jf(t[8])}}function Yf(e){var t=/^\s*##\s*(\S+)\s*(.*)/.exec(e);if(!t)return null;var n=he(t,2)[1],r=he(t,3)[2],o={directive:n};if(r.length&&(r=r.replace(/\r?\n$/,""),o.value=r),"sequence-region"===n){var i=r.split(/\s+/,3);return K(K({},o),{},{seq_id:i[0],start:i[1]&&i[1].replace(/\D/g,""),end:i[2]&&i[2].replace(/\D/g,"")})}if("genome-build"===n){var a=he(r.split(/\s+/,2),2),s=a[0],u=a[1];return K(K({},o),{},{source:s,buildName:u})}return o}function Zf(e){var t=[];return Object.entries(e).forEach((function(e){var n,r=he(e,2),o=r[0],i=r[1];i&&(n=i.hasOwnProperty("toString")?Vf(i.toString()):Array.isArray(i)?i.map(Vf).join(","):Vf(i),t.push("".concat(Vf(o),"=").concat(n)))})),t.length?t.join(";"):"."}function Xf(e,t){var n=null==e.attributes?".":Zf(e.attributes),r=[null===e.seq_id?".":$f(e.seq_id),null===e.source?".":$f(e.source),null===e.type?".":$f(e.type),null===e.start?".":$f(e.start),null===e.end?".":$f(e.end),null===e.score?".":$f(e.score),null===e.strand?".":$f(e.strand),null===e.phase?".":$f(e.phase),n],o="".concat(r.join("\t"),"\n");return t[o]?"":(t[o]=!0,o)}function Qf(e,t){if(Array.isArray(e))return e.map((function(e){return Qf(e,t)})).join("");var n,r=[Xf(e,t)];return void 0!==(n=e).child_features&&void 0!==n.derived_features&&r.push.apply(r,me(e.child_features.map((function(e){return Qf(e,t)}))).concat(me(e.derived_features.map((function(e){return Qf(e,t)}))))),r.join("")}function ed(e){return Qf(e,{})}function td(e){var t="##".concat(e.directive);return e.value&&(t+=" ".concat(e.value)),t+"\n"}function nd(e){return"# ".concat(e.comment,"\n")}function rd(e){return">".concat(e.id).concat(e.description?" ".concat(e.description):"","\n").concat(e.sequence,"\n")}function od(e){function t(e){return"attributes"in e?ed(e):"directive"in e?td(e):"sequence"in e?rd(e):"comment"in e?nd(e):"# (invalid item found during format)\n"}return Array.isArray(e)?e.map(t):t(e)}Rl(Bf,Ff),Bf.prototype.push=function(e,t){return this._transformState.needTransform=!1,Ff.prototype.push.call(this,e,t)},Bf.prototype._transform=function(e,t,n){throw new Error("Not implemented")},Bf.prototype._write=function(e,t,n){var r=this._transformState;if(r.writecb=n,r.writechunk=e,r.writeencoding=t,!r.transforming){var o=this._readableState;(r.needTransform||o.needReadable||o.length<o.highWaterMark)&&this._read(o.highWaterMark)}},Bf.prototype._read=function(e){var t=this._transformState;null!==t.writechunk&&t.writecb&&!t.transforming?(t.transforming=!0,this._transform(t.writechunk,t.writeencoding,t.afterTransform)):t.needTransform=!0},Rl(zf,Bf),zf.prototype._transform=function(e,t,n){n(null,e)},Rl(Gf,xl),Gf.Readable=uf,Gf.Writable=Ef,Gf.Duplex=Ff,Gf.Transform=Bf,Gf.PassThrough=zf,Gf.Stream=Gf,Gf.prototype.pipe=function(e,t){var n=this;function r(t){e.writable&&!1===e.write(t)&&n.pause&&n.pause()}function o(){n.readable&&n.resume&&n.resume()}n.on("data",r),e.on("drain",o),e._isStdio||t&&!1===t.end||(n.on("end",a),n.on("close",s));var i=!1;function a(){i||(i=!0,e.end())}function s(){i||(i=!0,"function"==typeof e.destroy&&e.destroy())}function u(e){if(c(),0===xl.listenerCount(this,"error"))throw e}function c(){n.removeListener("data",r),e.removeListener("drain",o),n.removeListener("end",a),n.removeListener("close",s),n.removeListener("error",u),e.removeListener("error",u),n.removeListener("end",c),n.removeListener("close",c),e.removeListener("close",c)}return n.on("error",u),e.on("error",u),n.on("end",c),n.on("close",c),e.on("close",c),e.emit("pipe",n),e};var id={__proto__:null,unescape:Hf,escape:Vf,escapeColumn:$f,parseAttributes:Jf,parseFeature:Kf,parseDirective:Yf,formatAttributes:Zf,formatFeature:ed,formatDirective:td,formatComment:nd,formatSequence:rd,formatItem:od},ad=function(){function e(t){ee(this,e),this.seqCallback=t,this.currentSequence=void 0}return ne(e,[{key:"addLine",value:function(e){var t=/^>\s*(\S+)\s*(.*)/.exec(e);t?(this._flush(),this.currentSequence={id:t[1],sequence:""},t[2]&&(this.currentSequence.description=t[2].trim())):this.currentSequence&&/\S/.test(e)&&(this.currentSequence.sequence+=e.replace(/\s/g,""))}},{key:"_flush",value:function(){this.currentSequence&&this.seqCallback(this.currentSequence)}},{key:"finish",value:function(){this._flush()}}]),e}(),sd=function(){function e(t){ee(this,e),this.fastaParser=void 0,this.eof=!1,this.lineNumber=0,this._underConstructionTopLevel=[],this._underConstructionById={},this._completedReferences={},this._underConstructionOrphans={};var n=function(){};this.featureCallback=t.featureCallback||n,this.endCallback=t.endCallback||n,this.commentCallback=t.commentCallback||n,this.errorCallback=t.errorCallback||n,this.directiveCallback=t.directiveCallback||n,this.sequenceCallback=t.sequenceCallback||n,this.bufferSize=void 0===t.bufferSize?1e3:t.bufferSize}return ne(e,[{key:"addLine",value:function(e){if(this.fastaParser)this.fastaParser.addLine(e);else if(!this.eof)if(this.lineNumber+=1,/^\s*[^#\s>]/.test(e))this._bufferLine(e);else{var t=/^\s*(#+)(.*)/.exec(e);if(t){var n=he(t,2)[1],r=he(t,3)[2];if(3===n.length)this._emitAllUnderConstructionFeatures();else if(2===n.length){var o=Yf(e);o&&("FASTA"===o.directive?(this._emitAllUnderConstructionFeatures(),this.eof=!0,this.fastaParser=new ad(this.sequenceCallback)):this._emitItem(o))}else r=r.replace(/\s*/,""),this._emitItem({comment:r})}else if(/^\s*$/.test(e));else{if(!/^\s*>/.test(e)){var i=e.replace(/\r?\n?$/g,"");throw new Error("GFF3 parse error.  Cannot parse '".concat(i,"'."))}this._emitAllUnderConstructionFeatures(),this.eof=!0,this.fastaParser=new ad(this.sequenceCallback),this.fastaParser.addLine(e)}}}},{key:"finish",value:function(){this._emitAllUnderConstructionFeatures(),this.fastaParser&&this.fastaParser.finish(),this.endCallback()}},{key:"_emitItem",value:function(e){Array.isArray(e)?this.featureCallback(e):"directive"in e?this.directiveCallback(e):"comment"in e&&this.commentCallback(e)}},{key:"_enforceBufferSizeLimit",value:function(){for(var e=this,t=arguments.length>0&&void 0!==arguments[0]?arguments[0]:0,n=function t(n){n&&Array.isArray(n)&&n[0].attributes&&n[0].attributes.ID&&n[0].attributes.ID[0]&&(n[0].attributes.ID.forEach((function(t){delete e._underConstructionById[t],delete e._completedReferences[t]})),n.forEach((function(e){e.child_features&&e.child_features.forEach((function(e){return t(e)})),e.derived_features&&e.derived_features.forEach((function(e){return t(e)}))})))};this._underConstructionTopLevel.length+t>this.bufferSize;){var r=this._underConstructionTopLevel.shift();r&&(this._emitItem(r),n(r))}}},{key:"_emitAllUnderConstructionFeatures",value:function(){if(this._underConstructionTopLevel.forEach(this._emitItem.bind(this)),this._underConstructionTopLevel=[],this._underConstructionById={},this._completedReferences={},Array.from(Object.values(this._underConstructionOrphans)).length)throw new Error("some features reference other features that do not exist in the file (or in the same '###' scope). ".concat(JSON.stringify(this._underConstructionOrphans)))}},{key:"_bufferLine",value:function(e){var t,n,r,o=this,i=K(K({},Kf(e)),{},{child_features:[],derived_features:[]}),a=(null===(t=i.attributes)||void 0===t?void 0:t.ID)||[],s=(null===(n=i.attributes)||void 0===n?void 0:n.Parent)||[],u=(null===(r=i.attributes)||void 0===r?void 0:r.Derives_from)||[];if(a.length||s.length||u.length){var c=void 0;a.forEach((function(e){var t=o._underConstructionById[e];t?(t[t.length-1].type!==i.type&&o._parseError('multi-line feature "'.concat(e,'" has inconsistent types: "').concat(i.type,'", "').concat(t[t.length-1].type,'"')),t.push(i),c=t):(c=[i],o._enforceBufferSizeLimit(1),s.length||u.length||o._underConstructionTopLevel.push(c),o._underConstructionById[e]=c,o._resolveReferencesTo(c,e))})),this._resolveReferencesFrom(c||[i],{Parent:s,Derives_from:u},a)}else this._emitItem([i])}},{key:"_resolveReferencesTo",value:function(e,t){var n=this._underConstructionOrphans[t];n&&(e.forEach((function(e){var t;(t=e.child_features).push.apply(t,me(n.Parent))})),e.forEach((function(e){var t;(t=e.derived_features).push.apply(t,me(n.Derives_from))})),delete this._underConstructionOrphans[t])}},{key:"_parseError",value:function(e){this.eof=!0,this.errorCallback("".concat(this.lineNumber,": ").concat(e))}},{key:"_resolveReferencesFrom",value:function(e,t,n){var r=this;function o(e,t,n){var r=e[t];r||(e[t]=r={});var o=r[n]||!1;return r[n]=!0,o}t.Parent.forEach((function(t){var i=r._underConstructionById[t];if(i)n.filter((function(e){return o(r._completedReferences,e,"Parent,".concat(t))})).length||i.forEach((function(t){t.child_features.push(e)}));else{var a=r._underConstructionOrphans[t];a||(r._underConstructionOrphans[t]=a={Parent:[],Derives_from:[]}),a.Parent.push(e)}})),t.Derives_from.forEach((function(t){var i=r._underConstructionById[t];if(i)n.filter((function(e){return o(r._completedReferences,e,"Derives_from,".concat(t))})).length||i.forEach((function(t){t.derived_features.push(e)}));else{var a=r._underConstructionOrphans[t];a||(r._underConstructionOrphans[t]=a={Parent:[],Derives_from:[]}),a.Derives_from.push(e)}}))}}]),e}();function ud(e){qt&&At?At(e):e()}function cd(e){var t=K({encoding:"utf8",parseFeatures:!0,parseDirectives:!1,parseSequences:!0,parseComments:!1,bufferSize:1e3},e);return e.parseAll&&(t.parseFeatures=!0,t.parseDirectives=!0,t.parseComments=!0,t.parseSequences=!0),t}var ld=function(e){oe(n,e);var t=fe(n);function n(){var e,r=arguments.length>0&&void 0!==arguments[0]?arguments[0]:{};ee(this,n),(e=t.call(this,{objectMode:!0})).textBuffer="";var o=cd(r);e.encoding=r.encoding||"utf8",e.decoder=new tf;var i=e.push.bind(le(e));return e.parser=new sd({featureCallback:o.parseFeatures?i:void 0,directiveCallback:o.parseDirectives?i:void 0,commentCallback:o.parseComments?i:void 0,sequenceCallback:o.parseSequences?i:void 0,errorCallback:function(t){return e.emit("error",t)},bufferSize:o.bufferSize}),e}return ne(n,[{key:"_addLine",value:function(e){e&&this.parser.addLine(e)}},{key:"_nextText",value:function(e){var t=this,n=(this.textBuffer+e).split(/\r?\n/);this.textBuffer=n.pop()||"",n.forEach((function(e){return t._addLine(e)}))}},{key:"_transform",value:function(e,t,n){this._nextText(this.decoder.write(e)),ud(n)}},{key:"_flush",value:function(e){this.decoder.end&&this._nextText(this.decoder.end()),null!=this.textBuffer&&this._addLine(this.textBuffer),this.parser.finish(),ud(e)}}]),n}(Bf),fd=function(e){oe(n,e);var t=fe(n);function n(){var e,r=arguments.length>0&&void 0!==arguments[0]?arguments[0]:{};return ee(this,n),(e=t.call(this,Object.assign(r,{objectMode:!0}))).linesSinceLastSyncMark=0,e.haveWeEmittedData=!1,e.fastaMode=!1,e.minLinesBetweenSyncMarks=r.minSyncLines||100,e.insertVersionDirective=r.insertVersionDirective||!1,e}return ne(n,[{key:"_transform",value:function(e,t,n){var r;if(!this.haveWeEmittedData&&this.insertVersionDirective){var o=Array.isArray(e)?e[0]:e;"directive"in o&&"gff-version"!==o.directive&&this.push("##gff-version 3\n")}if("sequence"in e&&!this.fastaMode&&(this.push("##FASTA\n"),this.fastaMode=!0),r=Array.isArray(e)?e.map(od).join(""):od(e),this.push(r),this.linesSinceLastSyncMark>=this.minLinesBetweenSyncMarks)this.push("###\n"),this.linesSinceLastSyncMark=0;else{for(var i=0,a=0;a<r.length;a+=1)"\n"===r[a]&&(i+=1);this.linesSinceLastSyncMark+=i}this.haveWeEmittedData=!0,ud(n)}}]),n}(Bf),dd={parseStream:function(){return new ld(arguments.length>0&&void 0!==arguments[0]?arguments[0]:{})},parseStringSync:function(e){if(!e)return[];var t=cd(arguments.length>1&&void 0!==arguments[1]?arguments[1]:{}),n=[],r=n.push.bind(n),o=new sd({featureCallback:t.parseFeatures?r:void 0,directiveCallback:t.parseDirectives?r:void 0,commentCallback:t.parseComments?r:void 0,sequenceCallback:t.parseSequences?r:void 0,bufferSize:Infinity,errorCallback:function(e){throw e}});return e.split(/\r?\n/).forEach(o.addLine.bind(o)),o.finish(),n},formatSync:function(e){var t=[],n=[];e.forEach((function(e){"sequence"in e?n.push(e):t.push(e)}));var r=t.map(od).join("");return n.length&&(r+="##FASTA\n",r+=n.map(rd).join("")),r},formatStream:function(){return new fd(arguments.length>0&&void 0!==arguments[0]?arguments[0]:{})},formatFile:function(e,t){var n=K({insertVersionDirective:!0},arguments.length>2&&void 0!==arguments[2]?arguments[2]:{});return new Promise((function(r,o){e.pipe(new fd(n)).on("end",(function(){return r(null)})).on("error",o).pipe(t)}))},util:id};async function hd(e,t,n){const r=dd.parseStringSync(t,{parseSequences:!0,parseComments:!0,parseDirectives:!1,parseFeatures:!0});if(0===r.length)throw new Error("No features found in GFF3 file");let o=0,i=n.assemblies.get(e);i||(i=n.addAssembly(e,"InMemoryFileDriver"));for(const e of r)if(Array.isArray(e)){const t=nr.gff3ToAnnotationFeature(e),n=i.refSeqs.get(t.refSeq)??i.addRefSeq(t.refSeq,t.refSeq);n.features.has(t._id)||n.addFeature(t)}else if("comment"in e)i.addComment(e.comment);else{o++;let t=i.refSeqs.get(e.id);t||(t=i.addRefSeq(e.id,e.id,e.description)),e.description&&!t.description&&t.setDescription(e.description),t.addSequence({start:0,stop:e.sequence.length,sequence:e.sequence})}if(0===o)throw new Error("No embedded FASTA section found in GFF3");const a=await pd(i);return n.addCheckResults(a),i}async function pd(e){const t=[];for(const n of e.refSeqs.values())for(const e of n.features.values())for(const r of z.checkRegistry.getChecks().values()){const o=await r.checkFeature(u.getSnapshot(e),((e,t)=>Promise.resolve(n.getSequence(e,t))));t.push(...o)}return t}async function md(e,t){let n;try{n=await e.text()}catch{n=""}return`${t?`${t} — `:""}${e.status} ${e.statusText}${n?` (${n})`:""}`}var gd={},yd=Ju.exports;Object.defineProperty(gd,"__esModule",{value:!0});var vd=gd.default=void 0;vd=gd.default=(0,yd(Ku).default)((0,N.default.jsx)("path",{d:"M3.9 12c0-1.71 1.39-3.1 3.1-3.1h4V7H7c-2.76 0-5 2.24-5 5s2.24 5 5 5h4v-1.9H7c-1.71 0-3.1-1.39-3.1-3.1zM8 13h8v-2H8v2zm9-6h-4v1.9h4c1.71 0 3.1 1.39 3.1 3.1s-1.39 3.1-3.1 3.1h-4V17h4c2.76 0 5-2.24 5-5s-2.24-5-5-5z"}),"Link");var _d={},bd=Ju.exports;Object.defineProperty(_d,"__esModule",{value:!0});var wd=_d.default=void 0;wd=_d.default=(0,bd(Ku).default)((0,N.default.jsx)("path",{d:"M19 6.41 17.59 5 12 10.59 6.41 5 5 6.41 10.59 12 5 17.59 6.41 19 12 13.41 17.59 19 19 17.59 13.41 12z"}),"Close");const Sd=m.makeStyles()((e=>({dialogTitle:{background:e.palette.primary.main,color:e.palette.primary.contrastText,padding:e.spacing(2)},closeButton:{position:"absolute",right:e.spacing(1),top:e.spacing(1.5),color:e.palette.primary.contrastText}}))),xd=p.observer((function(e){const{classes:t}=Sd(),{handleClose:n,title:r,...o}=e;return M.default.createElement(h.Dialog,{...o,header:M.default.createElement(M.default.Fragment,null,M.default.createElement(c.DialogTitle,{className:t.dialogTitle},r),M.default.createElement(c.IconButton,{"aria-label":"close",onClick:n,className:t.closeButton},M.default.createElement(wd,null)))})}));var kd;function Ed({changeManager:e,handleClose:t,session:n}){const{internetAccounts:o}=u.getRoot(n),{notify:i}=n,a=o.filter((e=>"ApolloInternetAccount"===e.type));if(0===a.length)throw new Error("No Apollo internet account found");const[s,l]=d.useState(""),[f,h]=d.useState(""),[p,m]=d.useState(!1),[g,y]=d.useState(null),[v,_]=d.useState(kd.GFF3),[b,w]=d.useState(!0),[S,x]=d.useState(!1),[k,E]=d.useState(a[0]),[A,C]=d.useState(""),[O,R]=d.useState(""),[N,I]=d.useState(""),[j,F]=d.useState(!1);let L=!1;try{const e=new URL(A);"http:"!==e.protocol&&"https:"!==e.protocol||(L=!0)}catch{}let D=!1;try{const e=new URL(O);"http:"!==e.protocol&&"https:"!==e.protocol||(D=!0)}catch{}let q=!1;try{const e=new URL(N);"http:"!==e.protocol&&"https:"!==e.protocol||(q=!0)}catch{}return M.default.createElement(xd,{open:!0,maxWidth:!1,"data-testid":"add-assembly-dialog",title:"Add new assembly",handleClose:t},j?M.default.createElement(T.default,null):null,M.default.createElement("form",{onSubmit:async function(r){r.preventDefault(),h(""),x(!0),F(!0),i(`Assembly "${s}" is being added`,"info"),t(),r.preventDefault();const{jobsManager:o}=n,a=new AbortController,u={name:`UploadAssemblyFile for ${s}`,statusMessage:"Pre-validating",progressPct:0,cancelCallback:()=>{a.abort(),o.abortJob(u.name)}};o.runJob(u);let c="";const{baseURL:l,getFetcher:f,internetAccountId:d}=k;if(v!==kd.EXTERNAL&&g){const e=new URL("files",l);e.searchParams.set("type",v);const t=e.href,n=new FormData;n.append("file",g),n.append("fileName",g.name),n.append("type",v);const r=f({locationType:"UriLocation",uri:t});if(r){o.update(u.name,"Uploading file, this may take awhile");const{signal:e}=a,i=await r(t,{method:"POST",body:n,signal:e});if(!i.ok){const e=await md(i,"Error when inserting new assembly (while uploading file)");return o.abortJob(u.name,e),void h(e)}c=(await i.json())._id}}let p;if(v===kd.EXTERNAL)p=new nr.AddAssemblyFromExternalChange({typeName:"AddAssemblyFromExternalChange",assembly:(new Jn).toHexString(),assemblyName:s,externalLocation:{fa:A,fai:O,...N?{gzi:N}:{}}});else{const e={assembly:(new Jn).toHexString(),assemblyName:s,fileIds:{fa:c}};p=v===kd.GFF3&&b?new nr.AddAssemblyAndFeaturesFromFileChange({typeName:"AddAssemblyAndFeaturesFromFileChange",...e}):new nr.AddAssemblyFromFileChange({typeName:"AddAssemblyFromFileChange",...e})}o.done(u),await e.submit(p,{internetAccountId:d,updateJobsManager:!0}),x(!1),F(!1)}},M.default.createElement(c.DialogContent,{style:{display:"flex",flexDirection:"column"}},a.length>1?M.default.createElement(M.default.Fragment,null,M.default.createElement(c.DialogContentText,null,"Select account"),M.default.createElement(c.Select,{value:k.internetAccountId,onChange:function(e){x(!1);const t=a.find((t=>t.internetAccountId===e.target.value));if(!t)throw new Error(`Could not find internetAccount with ID "${e.target.value}"`);E(t)},disabled:S&&!f},o.map((e=>M.default.createElement(c.MenuItem,{key:e.id,value:e.internetAccountId},e.name))))):null,M.default.createElement(c.TextField,{margin:"dense",id:"name",label:"Assembly name",type:"TextField",fullWidth:!0,variant:"outlined",onChange:e=>{x(!1),l(e.target.value),function(e){const{assemblies:t}=n;t.find((t=>r.readConfObject(t,"displayName")===e))?(m(!1),h(`Assembly ${e} already exists.`)):(m(!0),h(""))}(e.target.value)},disabled:S&&!f}),M.default.createElement(c.FormControl,{style:{marginTop:20}},M.default.createElement(c.FormLabel,null,"Select GFF3, FASTA or EXTERNAL option"),M.default.createElement(c.RadioGroup,{"aria-labelledby":"demo-radio-buttons-group-label",defaultValue:kd.GFF3,name:"radio-buttons-group",onChange:function(e){_(e.target.value),w(e.target.value===kd.GFF3),C(""),R(""),y(null)},value:v},M.default.createElement(c.FormControlLabel,{value:kd.GFF3,control:M.default.createElement(c.Radio,null),label:"GFF3",disabled:S&&!f}),M.default.createElement(c.FormControlLabel,{value:kd.FASTA,control:M.default.createElement(c.Radio,null),label:"FASTA",disabled:S&&!f}),M.default.createElement(c.FormControlLabel,{value:kd.EXTERNAL,control:M.default.createElement(c.Radio,null),label:"External",disabled:S&&!f}))),v===kd.EXTERNAL?M.default.createElement(c.Box,{style:{marginTop:20}},M.default.createElement(c.Typography,{variant:"caption"},"Enter FASTA and FASTA index(es) URL"),M.default.createElement(c.TextField,{margin:"dense",helperText:"Can be bgz-compressed",id:"fasta",label:"FASTA",type:"TextField",fullWidth:!0,variant:"outlined",error:!L,onChange:e=>{C(e.target.value)},disabled:S&&!f,InputProps:{startAdornment:M.default.createElement(P.default,{position:"start"},M.default.createElement(vd,null))}}),M.default.createElement(c.TextField,{margin:"dense",id:"fasta-index",label:"FASTA Index",helperText:".fai or .gz.fai",type:"TextField",fullWidth:!0,variant:"outlined",error:!D,onChange:e=>{R(e.target.value)},disabled:S&&!f,InputProps:{startAdornment:M.default.createElement(P.default,{position:"start"},M.default.createElement(vd,null))}}),M.default.createElement(c.TextField,{margin:"dense",id:"fasta-gzi-index",label:"FASTA GZI Index",helperText:"Only for bgz-compressed FASTA, .gz.gzi",type:"TextField",fullWidth:!0,variant:"outlined",error:Boolean(N)&&!q,onChange:e=>{I(e.target.value)},disabled:S&&!f,InputProps:{startAdornment:M.default.createElement(P.default,{position:"start"},M.default.createElement(vd,null))}})):M.default.createElement(c.Box,{style:{marginTop:20}},M.default.createElement("input",{type:"file",onChange:function(e){if(!e.target.files)return;const t=e.target.files.item(0);if(y(t),!t)return;const n=t.name.toLowerCase();n.endsWith(".fasta")||n.endsWith(".fna")||n.endsWith(".fa")?_(kd.FASTA):(n.endsWith(".gff3")||n.endsWith(".gff"))&&_(kd.GFF3)},disabled:S&&!f}),M.default.createElement(c.FormGroup,null,M.default.createElement(c.FormControlLabel,{control:M.default.createElement(c.Checkbox,{checked:v===kd.GFF3&&b,onChange:()=>{w(!b)},disabled:v!==kd.GFF3||S&&!f}),label:"Also load features from GFF3 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e={trace:function(){},yy:{},symbols_:{error:2,JSON_PATH:3,DOLLAR:4,PATH_COMPONENTS:5,LEADING_CHILD_MEMBER_EXPRESSION:6,PATH_COMPONENT:7,MEMBER_COMPONENT:8,SUBSCRIPT_COMPONENT:9,CHILD_MEMBER_COMPONENT:10,DESCENDANT_MEMBER_COMPONENT:11,DOT:12,MEMBER_EXPRESSION:13,DOT_DOT:14,STAR:15,IDENTIFIER:16,SCRIPT_EXPRESSION:17,INTEGER:18,END:19,CHILD_SUBSCRIPT_COMPONENT:20,DESCENDANT_SUBSCRIPT_COMPONENT:21,"[":22,SUBSCRIPT:23,"]":24,SUBSCRIPT_EXPRESSION:25,SUBSCRIPT_EXPRESSION_LIST:26,SUBSCRIPT_EXPRESSION_LISTABLE:27,",":28,STRING_LITERAL:29,ARRAY_SLICE:30,FILTER_EXPRESSION:31,QQ_STRING:32,Q_STRING:33,$accept:0,$end:1},terminals_:{2:"error",4:"DOLLAR",12:"DOT",14:"DOT_DOT",15:"STAR",16:"IDENTIFIER",17:"SCRIPT_EXPRESSION",18:"INTEGER",19:"END",22:"[",24:"]",28:",",30:"ARRAY_SLICE",31:"FILTER_EXPRESSION",32:"QQ_STRING",33:"Q_STRING"},productions_:[0,[3,1],[3,2],[3,1],[3,2],[5,1],[5,2],[7,1],[7,1],[8,1],[8,1],[10,2],[6,1],[11,2],[13,1],[13,1],[13,1],[13,1],[13,1],[9,1],[9,1],[20,3],[21,4],[23,1],[23,1],[26,1],[26,3],[27,1],[27,1],[27,1],[25,1],[25,1],[25,1],[29,1],[29,1]],performAction:function(e,n,r,o,i,a,s){o.ast||(o.ast=t,t.initialize());var u=a.length-1;switch(i){case 1:return o.ast.set({expression:{type:"root",value:a[u]}}),o.ast.unshift(),o.ast.yield();case 2:return o.ast.set({expression:{type:"root",value:a[u-1]}}),o.ast.unshift(),o.ast.yield();case 3:return o.ast.unshift(),o.ast.yield();case 4:return o.ast.set({operation:"member",scope:"child",expression:{type:"identifier",value:a[u-1]}}),o.ast.unshift(),o.ast.yield();case 5:case 6:case 11:case 13:case 18:case 21:case 22:case 23:break;case 7:o.ast.set({operation:"member"}),o.ast.push();break;case 8:o.ast.set({operation:"subscript"}),o.ast.push();break;case 9:case 19:o.ast.set({scope:"child"});break;case 10:case 20:o.ast.set({scope:"descendant"});break;case 12:o.ast.set({scope:"child",operation:"member"});break;case 14:o.ast.set({expression:{type:"wildcard",value:a[u]}});break;case 15:o.ast.set({expression:{type:"identifier",value:a[u]}});break;case 16:o.ast.set({expression:{type:"script_expression",value:a[u]}});break;case 17:o.ast.set({expression:{type:"numeric_literal",value:parseInt(a[u])}});break;case 24:a[u].length>1?o.ast.set({expression:{type:"union",value:a[u]}}):this.$=a[u];break;case 25:this.$=[a[u]];break;case 26:this.$=a[u-2].concat(a[u]);break;case 27:this.$={expression:{type:"numeric_literal",value:parseInt(a[u])}},o.ast.set(this.$);break;case 28:this.$={expression:{type:"string_literal",value:a[u]}},o.ast.set(this.$);break;case 29:this.$={expression:{type:"slice",value:a[u]}},o.ast.set(this.$);break;case 30:this.$={expression:{type:"wildcard",value:a[u]}},o.ast.set(this.$);break;case 31:this.$={expression:{type:"script_expression",value:a[u]}},o.ast.set(this.$);break;case 32:this.$={expression:{type:"filter_expression",value:a[u]}},o.ast.set(this.$);break;case 33:case 34:this.$=a[u]}},table:[{3:1,4:[1,2],6:3,13:4,15:[1,5],16:[1,6],17:[1,7],18:[1,8],19:[1,9]},{1:[3]},{1:[2,1],5:10,7:11,8:12,9:13,10:14,11:15,12:[1,18],14:[1,19],20:16,21:17,22:[1,20]},{1:[2,3],5:21,7:11,8:12,9:13,10:14,11:15,12:[1,18],14:[1,19],20:16,21:17,22:[1,20]},{1:[2,12],12:[2,12],14:[2,12],22:[2,12]},{1:[2,14],12:[2,14],14:[2,14],22:[2,14]},{1:[2,15],12:[2,15],14:[2,15],22:[2,15]},{1:[2,16],12:[2,16],14:[2,16],22:[2,16]},{1:[2,17],12:[2,17],14:[2,17],22:[2,17]},{1:[2,18],12:[2,18],14:[2,18],22:[2,18]},{1:[2,2],7:22,8:12,9:13,10:14,11:15,12:[1,18],14:[1,19],20:16,21:17,22:[1,20]},{1:[2,5],12:[2,5],14:[2,5],22:[2,5]},{1:[2,7],12:[2,7],14:[2,7],22:[2,7]},{1:[2,8],12:[2,8],14:[2,8],22:[2,8]},{1:[2,9],12:[2,9],14:[2,9],22:[2,9]},{1:[2,10],12:[2,10],14:[2,10],22:[2,10]},{1:[2,19],12:[2,19],14:[2,19],22:[2,19]},{1:[2,20],12:[2,20],14:[2,20],22:[2,20]},{13:23,15:[1,5],16:[1,6],17:[1,7],18:[1,8],19:[1,9]},{13:24,15:[1,5],16:[1,6],17:[1,7],18:[1,8],19:[1,9],22:[1,25]},{15:[1,29],17:[1,30],18:[1,33],23:26,25:27,26:28,27:32,29:34,30:[1,35],31:[1,31],32:[1,36],33:[1,37]},{1:[2,4],7:22,8:12,9:13,10:14,11:15,12:[1,18],14:[1,19],20:16,21:17,22:[1,20]},{1:[2,6],12:[2,6],14:[2,6],22:[2,6]},{1:[2,11],12:[2,11],14:[2,11],22:[2,11]},{1:[2,13],12:[2,13],14:[2,13],22:[2,13]},{15:[1,29],17:[1,30],18:[1,33],23:38,25:27,26:28,27:32,29:34,30:[1,35],31:[1,31],32:[1,36],33:[1,37]},{24:[1,39]},{24:[2,23]},{24:[2,24],28:[1,40]},{24:[2,30]},{24:[2,31]},{24:[2,32]},{24:[2,25],28:[2,25]},{24:[2,27],28:[2,27]},{24:[2,28],28:[2,28]},{24:[2,29],28:[2,29]},{24:[2,33],28:[2,33]},{24:[2,34],28:[2,34]},{24:[1,41]},{1:[2,21],12:[2,21],14:[2,21],22:[2,21]},{18:[1,33],27:42,29:34,30:[1,35],32:[1,36],33:[1,37]},{1:[2,22],12:[2,22],14:[2,22],22:[2,22]},{24:[2,26],28:[2,26]}],defaultActions:{27:[2,23],29:[2,30],30:[2,31],31:[2,32]},parseError:function(e,t){if(!t.recoverable)throw new Error(e);this.trace(e)},parse:function(e){var t=[0],n=[null],r=[],o=this.table,i="",a=0,s=0,u=r.slice.call(arguments,1);this.lexer.setInput(e),this.lexer.yy=this.yy,this.yy.lexer=this.lexer,this.yy.parser=this,void 0===this.lexer.yylloc&&(this.lexer.yylloc={});var c=this.lexer.yylloc;r.push(c);var l=this.lexer.options&&this.lexer.options.ranges;this.parseError="function"==typeof this.yy.parseError?this.yy.parseError:Object.getPrototypeOf(this).parseError;for(var f,d,h,p,m,g,y,v,_={};;){if(this.defaultActions[d=t[t.length-1]]?h=this.defaultActions[d]:(null==f&&(v=void 0,"number"!=typeof(v=this.lexer.lex()||1)&&(v=this.symbols_[v]||v),f=v),h=o[d]&&o[d][f]),void 0===h||!h.length||!h[0]){var b;for(m in y=[],o[d])this.terminals_[m]&&m>2&&y.push("'"+this.terminals_[m]+"'");b=this.lexer.showPosition?"Parse error on line "+(a+1)+":\n"+this.lexer.showPosition()+"\nExpecting "+y.join(", ")+", got '"+(this.terminals_[f]||f)+"'":"Parse error on line "+(a+1)+": Unexpected "+(1==f?"end of 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p;g&&(t=t.slice(0,-1*g*2),n=n.slice(0,-1*g),r=r.slice(0,-1*g)),t.push(this.productions_[h[1]][0]),n.push(_.$),r.push(_._$),t.push(o[t[t.length-2]][t[t.length-1]]);break;case 3:return!0}}return!0}},t={initialize:function(){this._nodes=[],this._node={},this._stash=[]},set:function(e){for(var t in e)this._node[t]=e[t];return this._node},node:function(e){return arguments.length&&(this._node=e),this._node},push:function(){this._nodes.push(this._node),this._node={}},unshift:function(){this._nodes.unshift(this._node),this._node={}},yield:function(){var e=this._nodes;return this.initialize(),e}},n=function(){var e={EOF:1,parseError:function(e,t){if(!this.yy.parser)throw new Error(e);this.yy.parser.parseError(e,t)},setInput:function(e){return this._input=e,this._more=this._backtrack=this.done=!1,this.yylineno=this.yyleng=0,this.yytext=this.matched=this.match="",this.conditionStack=["INITIAL"],this.yylloc={first_line:1,first_column:0,last_line:1,last_column:0},this.options.ranges&&(this.yylloc.range=[0,0]),this.offset=0,this},input:function(){var e=this._input[0];return this.yytext+=e,this.yyleng++,this.offset++,this.match+=e,this.matched+=e,e.match(/(?:\r\n?|\n).*/g)?(this.yylineno++,this.yylloc.last_line++):this.yylloc.last_column++,this.options.ranges&&this.yylloc.range[1]++,this._input=this._input.slice(1),e},unput:function(e){var t=e.length,n=e.split(/(?:\r\n?|\n)/g);this._input=e+this._input,this.yytext=this.yytext.substr(0,this.yytext.length-t-1),this.offset-=t;var r=this.match.split(/(?:\r\n?|\n)/g);this.match=this.match.substr(0,this.match.length-1),this.matched=this.matched.substr(0,this.matched.length-1),n.length-1&&(this.yylineno-=n.length-1);var o=this.yylloc.range;return this.yylloc={first_line:this.yylloc.first_line,last_line:this.yylineno+1,first_column:this.yylloc.first_column,last_column:n?(n.length===r.length?this.yylloc.first_column:0)+r[r.length-n.length].length-n[0].length:this.yylloc.first_column-t},this.options.ranges&&(this.yylloc.range=[o[0],o[0]+this.yyleng-t]),this.yyleng=this.yytext.length,this},more:function(){return this._more=!0,this},reject:function(){return this.options.backtrack_lexer?(this._backtrack=!0,this):this.parseError("Lexical error on line "+(this.yylineno+1)+". You can only invoke reject() in the lexer when the lexer is of the backtracking persuasion (options.backtrack_lexer = true).\n"+this.showPosition(),{text:"",token:null,line:this.yylineno})},less:function(e){this.unput(this.match.slice(e))},pastInput:function(){var e=this.matched.substr(0,this.matched.length-this.match.length);return(e.length>20?"...":"")+e.substr(-20).replace(/\n/g,"")},upcomingInput:function(){var e=this.match;return e.length<20&&(e+=this._input.substr(0,20-e.length)),(e.substr(0,20)+(e.length>20?"...":"")).replace(/\n/g,"")},showPosition:function(){var e=this.pastInput(),t=new Array(e.length+1).join("-");return e+this.upcomingInput()+"\n"+t+"^"},test_match:function(e,t){var n,r,o;if(this.options.backtrack_lexer&&(o={yylineno:this.yylineno,yylloc:{first_line:this.yylloc.first_line,last_line:this.last_line,first_column:this.yylloc.first_column,last_column:this.yylloc.last_column},yytext:this.yytext,match:this.match,matches:this.matches,matched:this.matched,yyleng:this.yyleng,offset:this.offset,_more:this._more,_input:this._input,yy:this.yy,conditionStack:this.conditionStack.slice(0),done:this.done},this.options.ranges&&(o.yylloc.range=this.yylloc.range.slice(0))),(r=e[0].match(/(?:\r\n?|\n).*/g))&&(this.yylineno+=r.length),this.yylloc={first_line:this.yylloc.last_line,last_line:this.yylineno+1,first_column:this.yylloc.last_column,last_column:r?r[r.length-1].length-r[r.length-1].match(/\r?\n?/)[0].length:this.yylloc.last_column+e[0].length},this.yytext+=e[0],this.match+=e[0],this.matches=e,this.yyleng=this.yytext.length,this.options.ranges&&(this.yylloc.range=[this.offset,this.offset+=this.yyleng]),this._more=!1,this._backtrack=!1,this._input=this._input.slice(e[0].length),this.matched+=e[0],n=this.performAction.call(this,this.yy,this,t,this.conditionStack[this.conditionStack.length-1]),this.done&&this._input&&(this.done=!1),n)return n;if(this._backtrack){for(var i in o)this[i]=o[i];return!1}return!1},next:function(){if(this.done)return this.EOF;var e,t,n,r;this._input||(this.done=!0),this._more||(this.yytext="",this.match="");for(var o=this._currentRules(),i=0;i<o.length;i++)if((n=this._input.match(this.rules[o[i]]))&&(!t||n[0].length>t[0].length)){if(t=n,r=i,this.options.backtrack_lexer){if(!1!==(e=this.test_match(n,o[i])))return e;if(this._backtrack){t=!1;continue}return!1}if(!this.options.flex)break}return t?!1!==(e=this.test_match(t,o[r]))&&e:""===this._input?this.EOF:this.parseError("Lexical error on line "+(this.yylineno+1)+". Unrecognized text.\n"+this.showPosition(),{text:"",token:null,line:this.yylineno})},lex:function(){return this.next()||this.lex()},begin:function(e){this.conditionStack.push(e)},popState:function(){return this.conditionStack.length-1>0?this.conditionStack.pop():this.conditionStack[0]},_currentRules:function(){return this.conditionStack.length&&this.conditionStack[this.conditionStack.length-1]?this.conditions[this.conditionStack[this.conditionStack.length-1]].rules:this.conditions.INITIAL.rules},topState:function(e){return(e=this.conditionStack.length-1-Math.abs(e||0))>=0?this.conditionStack[e]:"INITIAL"},pushState:function(e){this.begin(e)},stateStackSize:function(){return this.conditionStack.length},options:{},performAction:function(e,t,n,r){switch(n){case 0:return 4;case 1:return 14;case 2:return 12;case 3:return 15;case 4:return 16;case 5:return 22;case 6:return 24;case 7:return 28;case 8:return 30;case 9:return 18;case 10:return t.yytext=t.yytext.substr(1,t.yyleng-2),32;case 11:return t.yytext=t.yytext.substr(1,t.yyleng-2),33;case 12:return 17;case 13:return 31}},rules:[/^(?:\$)/,/^(?:\.\.)/,/^(?:\.)/,/^(?:\*)/,/^(?:[a-zA-Z_]+[a-zA-Z0-9_]*)/,/^(?:\[)/,/^(?:\])/,/^(?:,)/,/^(?:((-?(?:0|[1-9][0-9]*)))?\:((-?(?:0|[1-9][0-9]*)))?(\:((-?(?:0|[1-9][0-9]*)))?)?)/,/^(?:(-?(?:0|[1-9][0-9]*)))/,/^(?:"(?:\\["bfnrt/\\]|\\u[a-fA-F0-9]{4}|[^"\\])*")/,/^(?:'(?:\\['bfnrt/\\]|\\u[a-fA-F0-9]{4}|[^'\\])*')/,/^(?:\(.+?\)(?=\]))/,/^(?:\?\(.+?\)(?=\]))/],conditions:{INITIAL:{rules:[0,1,2,3,4,5,6,7,8,9,10,11,12,13],inclusive:!0}}};return e}();function r(){this.yy={}}return e.lexer=n,r.prototype=e,e.Parser=r,new r}();void 0!==e&&void 0!==n&&(n.parser=o,n.Parser=o.Parser,n.parse=function(){return o.parse.apply(o,arguments)},n.main=function(t){t[1]||(console.log("Usage: "+t[0]+" FILE"),r.exit(1));var o=e("fs").readFileSync(e("path").normalize(t[1]),"utf8");return n.parser.parse(o)},void 0!==t&&e.main===t&&n.main(r.argv.slice(1)))}).call(this,e("_process"))},{_process:14,fs:12,path:13}],2:[function(e,t,n){t.exports={identifier:"[a-zA-Z_]+[a-zA-Z0-9_]*",integer:"-?(?:0|[1-9][0-9]*)",qq_string:'"(?:\\\\["bfnrt/\\\\]|\\\\u[a-fA-F0-9]{4}|[^"\\\\])*"',q_string:"'(?:\\\\['bfnrt/\\\\]|\\\\u[a-fA-F0-9]{4}|[^'\\\\])*'"}},{}],3:[function(e,t,n){var r=e("./dict"),o=e("fs"),i={lex:{macros:{esc:"\\\\",int:r.integer},rules:[["\\$","return 'DOLLAR'"],["\\.\\.","return 'DOT_DOT'"],["\\.","return 'DOT'"],["\\*","return 'STAR'"],[r.identifier,"return 'IDENTIFIER'"],["\\[","return '['"],["\\]","return ']'"],[",","return ','"],["({int})?\\:({int})?(\\:({int})?)?","return 'ARRAY_SLICE'"],["{int}","return 'INTEGER'"],[r.qq_string,"yytext = yytext.substr(1,yyleng-2); return 'QQ_STRING';"],[r.q_string,"yytext = yytext.substr(1,yyleng-2); return 'Q_STRING';"],["\\(.+?\\)(?=\\])","return 'SCRIPT_EXPRESSION'"],["\\?\\(.+?\\)(?=\\])","return 'FILTER_EXPRESSION'"]]},start:"JSON_PATH",bnf:{JSON_PATH:[["DOLLAR",'yy.ast.set({ expression: { type: "root", value: $1 } }); yy.ast.unshift(); return yy.ast.yield()'],["DOLLAR PATH_COMPONENTS",'yy.ast.set({ expression: { type: "root", value: $1 } }); yy.ast.unshift(); return yy.ast.yield()'],["LEADING_CHILD_MEMBER_EXPRESSION","yy.ast.unshift(); return yy.ast.yield()"],["LEADING_CHILD_MEMBER_EXPRESSION PATH_COMPONENTS",'yy.ast.set({ operation: "member", scope: "child", expression: { type: "identifier", value: $1 }}); yy.ast.unshift(); return yy.ast.yield()']],PATH_COMPONENTS:[["PATH_COMPONENT",""],["PATH_COMPONENTS PATH_COMPONENT",""]],PATH_COMPONENT:[["MEMBER_COMPONENT",'yy.ast.set({ operation: "member" }); yy.ast.push()'],["SUBSCRIPT_COMPONENT",'yy.ast.set({ operation: "subscript" }); yy.ast.push() ']],MEMBER_COMPONENT:[["CHILD_MEMBER_COMPONENT",'yy.ast.set({ scope: "child" })'],["DESCENDANT_MEMBER_COMPONENT",'yy.ast.set({ scope: "descendant" })']],CHILD_MEMBER_COMPONENT:[["DOT 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wR{ontologyName;ontologyVersion;sourceLocation;db;options;loadOboGraphJson=vR;getTermsByFulltext=lR;openDatabase=gR;isDatabaseCurrent=bR;get textIndexFields(){return _R.call(this)}get prefixes(){return this.options.prefixes??new Map}DEFAULT_MAX_SEARCH_RESULTS=100;constructor(e,t,n,r){this.ontologyName=e,this.ontologyVersion=t,this.sourceLocation=n,this.db=this.prepareDatabase(),this.options=r??{}}validate(){const e=[],{sourceLocation:t,sourceType:n}=this;return n?"obo-graph-json"!==n&&e.push(new Error(`ontology source file ${JSON.stringify(t)} has type ${n}, which is not yet supported`)):e.push(new Error(`unable to determine format of ontology source file ${JSON.stringify(t)}, file name must end with ".json", ".obo", or ".owl"`)),e}get sourceType(){if(n.isUriLocation(this.sourceLocation)){if(this.sourceLocation.uri.endsWith(".json"))return"obo-graph-json"}else if(n.isLocalPathLocation(this.sourceLocation)&&this.sourceLocation.localPath.endsWith(".json"))return"obo-graph-json"}get dbName(){return`Apollo Ontology "${this.ontologyName}" "${this.ontologyVersion}"`}async prepareDatabase(){const e=this.validate();if(e.length>0)throw e;const t=await this.openDatabase(this.dbName);if(await this.isDatabaseCurrent(t))return t;try{const{sourceLocation:e,sourceType:n}=this;if("obo-graph-json"!==n)throw new Error(`ontology source file ${JSON.stringify(e)} has type ${n}, which is not yet supported`);return await this.loadOboGraphJson(t),t}catch(e){throw t.close(),await function(e){var t=(arguments.length>1&&void 0!==arguments[1]?arguments[1]:{}).blocked,n=indexedDB.deleteDatabase(e);return t&&n.addEventListener("blocked",(function(e){return t(e.oldVersion,e)})),Fd(n).then((function(){}))}(this.dbName),e}}async termCount(e){const t=await this.db;return(e??t.transaction("nodes")).objectStore("nodes").count()}unique(e){const t=new Map,n=[];for(const r of e)t.has(r.id)||(t.set(r.id,!0),n.push(r));return n}async getTermsWithLabelOrSynonym(e,t,n){const r=t?.includeSubclasses??!0,o=await this.db,i=n??o.transaction(["nodes","edges"]),a=i.objectStore("nodes"),s=[...await a.index("by-label").getAll(e),...await a.index("by-synonym").getAll(e)];if(r){const e=await this.recurseEdges("by-object",s.map((e=>e.id)),(e=>"is_a"===e.pred),"sub",i);for(const t of e){const e=await a.get(t);e&&s.push(e)}}return s}async getPropertiesByLabel(e,t,n){const r=t?.includeSubProperties??!0,o=await this.db,i=n??o.transaction(["nodes","edges"]),a=(await this.getTermsWithLabelOrSynonym(e,{includeSubclasses:!1},i)).filter((e=>CR(e)));if(r){const e=await this.recurseEdges("by-object",a.map((e=>e.id)),(e=>"subPropertyOf"===e.pred),"sub",i),t=i.objectStore("nodes");for(const n of e){const e=await t.get(n);e&&CR(e)&&a.push(e)}}return a}async recurseEdges(e,t,n,r,o){const i=new Set;return await async function t(a){await Promise.all([...a].map((async a=>{const s=(await o.objectStore("edges").index(e).getAll(a)).filter((e=>n(e))).map((e=>e[r]));if(s.length>0){for(const e of s)i.add(e);await t(s)}})))}(t),i.values()}async*expandNodeSet(e,t="is_a",n,r){const o=await this.db,i=r??o.transaction(["edges"]),a=[...e],s=await this.recurseEdges("subclasses"===n?"by-object":"by-subject",a,(e=>e.pred===t),"subclasses"===n?"sub":"obj",i);for(const e of a)yield e;for(const e of s)yield e}expandSubclasses(e,t="is_a",n){return this.expandNodeSet(e,t,"subclasses",n)}expandSuperclasses(e,t="is_a",n){return this.expandNodeSet(e,t,"superclasses",n)}async getClassesThat(e,t,n){const r=await this.db,o=n??r.transaction(["nodes","edges"]),i=await this.getPropertiesByLabel(e,{includeSubProperties:!0},o),a=new Set(i.map((e=>e.id))),s=await async function(e){const t=[];for await(const n of e)t.push(n);return t}(this.expandSuperclasses(t.map((e=>e.id)),"is_a",o)),u=await this.recurseEdges("by-object",s,(e=>a.has(e.pred)),"sub",o),c=this.expandSubclasses(u,"is_a",o),l=[];for await(const e of c){const t=await o.objectStore("nodes").get(e);t&&AR(t)&&!pR(t)&&l.push(t)}return 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function(n){n.preventDefault(),m("");const s=new nr.AddFeatureChange({changedIds:[o._id],typeName:"AddFeatureChange",assembly:r,addedFeature:{_id:(new Jn).toHexString(),refSeq:o.refSeq,min:Number(u)-1,max:Number(a),type:f},parentFeatureId:o._id});await e.submit(s),i("Feature added successfully","success"),t(),n.preventDefault()}},M.default.createElement(c.DialogContent,{style:{display:"flex",flexDirection:"column"}},M.default.createElement(c.TextField,{margin:"dense",id:"start",label:"Start",type:"number",fullWidth:!0,variant:"outlined",value:u,onChange:e=>{l(e.target.value)}}),M.default.createElement(c.TextField,{margin:"dense",id:"end",label:"End",type:"number",fullWidth:!0,variant:"outlined",value:a,onChange:e=>{s(e.target.value)},error:v,helperText:v?'"End" must be greater than "Start"':null}),M.default.createElement(RR,{session:n,ontologyName:"Sequence Ontology",style:{width:170},value:f,filterTerms:AR,fetchValidTerms:async function(e,t,n){const r=await OR(e,t);if(r)return 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s=[{directive:"gff-version",value:"3"}],c=r.getConf(n,["sequence","adapter","features"]);for(const e of c){const{end:t,refName:n,start:r}=e;s.push({directive:"sequence-region",value:`${n} ${r+1} ${t}`})}for(const[,e]of i){const{features:t}=e;if(t)for(const[,e]of t)s.push(nr.annotationFeatureToGFF3(u.getSnapshot(e)))}for(const e of c){const{refName:t,seq:n}=e;s.push({id:t,description:"",sequence:n})}const l=dd.formatSync(s),f=new Blob([l],{type:"text/plain;charset=utf-8"});FR.exports.saveAs(f,`${n.displayName??n.name}.gff3`)}(t),e()}},M.default.createElement(c.DialogContent,{style:{display:"flex",flexDirection:"column"}},M.default.createElement(c.DialogContentText,null,"Select assembly"),M.default.createElement(c.Select,{labelId:"label",value:n?.name??"",onChange:function(e){const t=h.find((t=>t.name===e.target.value));o(t)},disabled:0===h.length},h.map((e=>M.default.createElement(c.MenuItem,{key:e.name,value:e.name},e.displayName??e.name)))),M.default.createElement(c.DialogContentText,null,"Select assembly to export to GFF3")),M.default.createElement(c.DialogActions,null,M.default.createElement(c.Button,{disabled:!n,variant:"contained",type:"submit"},"Download"),M.default.createElement(c.Button,{variant:"outlined",type:"submit",onClick:e},"Cancel"))),i?M.default.createElement(c.DialogContent,null,M.default.createElement(c.DialogContentText,{color:"error"},i)):null)}function DR({changeManager:e,handleClose:t,session:n}){const{apolloDataStore:o}=n,[i,a]=d.useState(),[s,u]=d.useState(),[l,f]=d.useState(""),[h,p]=d.useState(!1),[m,g]=d.useState(),[y,v]=d.useState(!1),[_,b]=d.useState(!1),{collaborationServerDriver:w,getInternetAccount:S}=o,x=w.getAssemblies();return d.useEffect((()=>{s&&(async()=>{const{internetAccountConfigId:e}=r.getConf(s,["sequence","metadata"]),t=S(s.name,e);if(!t)throw new Error("No Apollo internet account found");const{baseURL:n}=t,o=new URL("features/count",n),i=new URLSearchParams({assemblyId:s.name});o.search=i.toString();const a=t.getFetcher({locationType:"UriLocation",uri:o.toString()});b(!0);const u=await a(o.toString(),{method:"GET"});if(!u.ok)throw new Error(await md(u));{const e=await u.json();g(e.count)}b(!1)})().catch((e=>{console.error(e),f(e.message??e)}))}),[S,n,s]),M.default.createElement(xd,{open:!0,title:"Import Features from GFF3 file",handleClose:t,maxWidth:!1,"data-testid":"import-features-dialog"},_?M.default.createElement(T.default,null):null,M.default.createElement("form",{onSubmit:async function(o){o.preventDefault(),f(""),b(!0),p(!0);let a="";if(!i)return void f("must select a file");if(!s)return void f("Must select assembly to 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e({id:t.uniqueId||"".concat(o,"-").concat(n),data:K({strand:r.data.strand},t),parent:r}):t})))}return ne(e,[{key:"get",value:function(e){return"subfeatures"===e?this.subfeatures:"parent"===e?this.parent():this.data[e]}},{key:"set",value:function(e,t){this.data[e]=t}},{key:"tags",value:function(){return Object.keys(this.data)}},{key:"id",value:function(){return this.uniqueId}},{key:"parent",value:function(){return this.parentHandle}},{key:"children",value:function(){return this.get("subfeatures")}},{key:"toJSON",value:function(){var e=K(K({},this.data),{},{uniqueId:this.id()}),t=this.parent();t&&(e.parentId=t.id());var n=this.children();return n&&(e.subfeatures=n.map((function(e){return e.toJSON()}))),e}}],[{key:"fromJSON",value:function(t){return new e(K({},t))}}]),e}(),ON=EN.default=CN;function RN(e){return"object"==typeof e&&null!==e&&"apollo"in e&&!0===e.apollo}const NN="undefined"==typeof sessionStorage;class IN extends S.BaseSequenceAdapter{regions;async getRefNames(e){return(await this.getRegions(e)).map((e=>e.refName))}async getRegions(e){if(this.regions)return this.regions;const t=r.readConfObject(this.config,"assemblyId");if(!NN){const e=this.pluginManager?.rootModel?.session?.apolloDataStore;if(!e)throw new Error("No Apollo data store found");const n=e.getBackendDriver(t),r=await n.getRegions(t);return this.regions=r,r}const n=await new Promise(((n,r)=>{const o=setTimeout((()=>{r("timeout")}),2e4),i=oN(),a=e=>{const{data:t}=e;RN(t)&&t.messageId===i&&(clearTimeout(o),removeEventListener("message",a),n(t.regions))};addEventListener("message",a,e),globalThis.rpcServer.emit("apollo",{apollo:!0,method:"getRegions",assembly:t,messageId:i})}));return this.regions=n,n}getFeatures(e,t){const{end:n,refName:o,start:i}=e,a=r.readConfObject(this.config,"assemblyId"),s={...e,assemblyName:a};return x.ObservableCreate((async e=>{if(!NN){const t=this.pluginManager?.rootModel?.session?.apolloDataStore;if(!t)return void e.error("No Apollo data store 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MN=p.observer((function(e){const[t,o]=d.useState(),[i,a]=d.useState(),l=d.useRef(null),f=d.useRef(null),h=d.useRef(null),[p,m]=d.useState(!1),[g,y]=d.useState(!0),[v,_]=d.useState(),[b,w]=d.useState(!1),[S,x]=d.useState([]),{bpPerPx:k,displayModel:E,regions:A}=e,{session:C}=E,{collaborators:O}=C;d.useEffect((()=>s.autorun((()=>{x(s.toJS(O))}))),[]);const[R]=A,N=(R.end-R.start)/k,{apolloFeatureUnderMouse:I,apolloRowHeight:P,apolloRowUnderMouse:T,changeManager:j,codonLayout:F,featureLayout:L,features:D,featuresHeight:q,getAssemblyId:B,selectedFeature:U,setApolloFeatureUnderMouse:z,setApolloRowUnderMouse:G,setSelectedFeature:H,showIntronLines:W,showStartCodons:V,showStopCodons:$}=E,J=[...D.values()].map((e=>[...e.values()].map((e=>u.getSnapshot(e))))),K=d.useMemo((()=>{const{internetAccounts:e}=u.getRoot(C),{assemblyName:t}=R,{assemblyManager:o}=n.getSession(E),i=o.get(t);if(!i)throw new Error(`No assembly found with name 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n=[(r[0]-i[0])/2+i[0],Math.max(1,Math.min(i[1],r[1])-P/2+2*e)];t.beginPath(),t.moveTo(i[0],i[1]+2*e),t.lineTo(...n),t.stroke(),t.moveTo(...n),t.lineTo(r[0],r[1]+2*e),t.stroke()}i=r}e+=1}}}),[W,R,k,R.start,R.end,R.reversed,N,L,q,D,P,J]),d.useEffect((()=>{const e=h.current;if(!e)return;const t=e.getContext("2d");if(t){t.clearRect(0,0,N,q);for(const[e,{starts:n,stops:r}]of F){const o=k;for(const r of n){const n=r/o;R.start/o<=n&&n<=R.end/o&&(t.fillStyle="rgba(255,0,255,1)",V?t.fillRect(Math.round(n-.5-R.start/o),e*P,1,P):t.clearRect(Math.round(n-.5-R.start/o),e*P,1,P))}for(const n of r){const r=n/o;R.start/o<=r&&r<=R.end/o&&(t.fillStyle="black",$?t.fillRect(Math.round(r-.5-R.start/o),e*P,1,P):t.clearRect(Math.round(r-.5-R.start/o),e*P,1,P))}}}}),[V,$,F,N,q,k,P,R,R.start,R.end]),d.useEffect((()=>{const e=f.current;if(!e)return;const t=e.getContext("2d");if(t){t.clearRect(0,0,N,q);for(const e of S){const{locations:n}=e;if(0===n.length)return;for(const r of n){const{end:n,start:o}=r,i=(R.reversed?R.end-o:o-R.start)/k,a=(n-o)/k;t.fillStyle="rgba(0,255,0,.2)",t.fillRect(i,1,a,100),t.fillStyle="black",t.fillText(e.name,i+1,11,a-2)}}}}),[I,T,k,q,N,R,R.start,R.end,R.reversed,v,P,S]),M.default.createElement("div",{style:{position:"relative",width:N,height:q}},M.default.createElement(c.Menu,{open:Boolean(i),anchorReference:"anchorPosition",anchorPosition:t?{left:t[0],top:t[1]}:void 0,"data-testid":"base_linear_display_context_menu",onClose:()=>{a(void 0)}},M.default.createElement(c.MenuItem,{disabled:g,key:1,value:1,onClick:()=>{if(!i)return;const e=B(R.assemblyName);C.queueDialog((t=>[NR,{session:C,handleClose:()=>{t(),a(void 0)},changeManager:j,sourceFeature:i,sourceAssemblyId:e,internetAccount:K}]))}},"Add child feature"),M.default.createElement(c.MenuItem,{disabled:g,key:2,value:2,onClick:()=>{if(!i)return;const e=B(R.assemblyName);C.queueDialog((t=>[TR,{session:C,handleClose:()=>{t(),a(void 0)},changeManager:j,sourceFeature:i,sourceAssemblyId:e}]))}},"Copy features and annotations"),M.default.createElement(c.MenuItem,{disabled:!p,key:3,value:3,onClick:()=>{if(!i)return;const e=B(R.assemblyName);C.queueDialog((t=>[jR,{session:C,handleClose:()=>{t(),a(void 0)},changeManager:j,sourceFeature:i,sourceAssemblyId:e,selectedFeature:U,setSelectedFeature:H}]))}},"Delete feature")),M.default.createElement("canvas",{ref:l,width:N,height:q,style:{position:"absolute",left:0,top:0}}),M.default.createElement("canvas",{ref:f,width:N,height:q,onMouseLeave:function(){z(),G()},onMouseUp:async function(){if(b){if(v){const e=B(R.assemblyName),{bp:t,edge:n,feature:r}=v;let o;if("end"===n){const n=r._id,i=r.max,a=Math.round(t);o=new nr.LocationEndChange({typeName:"LocationEndChange",changedIds:[n],featureId:n,oldEnd:i,newEnd:a,assembly:e})}else{const n=r._id,i=r.min,a=Math.round(t);o=new nr.LocationStartChange({typeName:"LocationStartChange",changedIds:[n],featureId:n,oldStart:i,newStart:a,assembly:e})}await j.submit(o)}}else I&&H(I);_(void 0),w(!1)},onContextMenu:function(e){e.preventDefault(),a(I),o([e.pageX,e.pageY])},style:{position:"absolute",left:0,top:0}}),M.default.createElement("canvas",{ref:h,width:N,height:6*P,style:{position:"absolute",left:0,top:0}}))})),jN=r.ConfigurationSchema("ApolloSixFrameRenderer",{},{explicitlyTyped:!0});class FN extends o.RendererType{async renderInClient(e,t){return this.render(t)}async freeResourcesInClient(e,t){return 0}}var LN={};Object.defineProperty(LN,"__esModule",{value:!0}),LN.RefSequenceResult=void 0;var DN=function(){function e(t){ee(this,e),this.label=t.label,this.locString=t.locString,this.renderingComponent=t.renderingComponent,this.displayString=t.displayString,this.matchedAttribute=t.matchedAttribute,this.matchedObject=t.matchedObject,this.textSearchAdapter=t.textSearchAdapter,this.relevance=t.relevance,this.trackId=t.trackId,this.score=t.score||1,this.results=t.results||[]}return ne(e,[{key:"getLabel",value:function(){return this.label}},{key:"getDisplayString",value:function(){return this.displayString||this.label}},{key:"getRenderingComponent",value:function(){return this.renderingComponent}},{key:"getTrackId",value:function(){return this.trackId}},{key:"getScore",value:function(){return this.score}},{key:"updateScore",value:function(e){return this.score=e,this.score}},{key:"getId",value:function(){return"".concat(this.getLabel(),"-").concat(this.getLocation(),"-").concat(this.getTrackId())}},{key:"hasLocation",value:function(){return!!this.locString}},{key:"getLocation",value:function(){return this.locString}},{key:"getComboResults",value:function(){return this.results}}]),e}(),qN=LN.default=DN,BN=function(e){oe(n,e);var t=fe(n);function n(e){var r,o;return ee(this,n),(r=t.call(this,e)).refName=null!==(o=e.refName)&&void 0!==o?o:"",r}return ne(n,[{key:"getLocation",value:function(){return this.refName}}]),n}(DN);LN.RefSequenceResult=BN;class UN extends S.BaseAdapter{get baseURL(){return r.readConfObject(this.config,"baseURL").uri}get trackId(){return r.readConfObject(this.config,"trackId")}get assemblyNames(){return r.readConfObject(this.config,"assemblyNames")}mapBaseResult(e,t,n){return e.map((e=>{const r=t.getCanonicalRefName(e.refSeq);return new qN({label:n,trackId:this.trackId,locString:`${r}:${e.min+1}..${e.max}`})}))}async searchIndex(e){const t=e.queryString,n=[],r=this.pluginManager?.rootModel?.session;if(!r)return n;const{apolloDataStore:o}=r,{assemblyManager:i}=r;for(const r of this.assemblyNames){const a=o.getBackendDriver(r),s=i.get(r);if(!a||!s)continue;const u=await a.searchFeatures(e.queryString,[r]);n.push(...this.mapBaseResult(u,s,t))}return n}freeResources(){}}var zN=r.ConfigurationSchema("ApolloTextSearchAdapter",{assemblyNames:{type:"stringArray",defaultValue:[],description:"List of assemblies covered by text search adapter"},trackId:{type:"string",defaultValue:""},baseURL:{type:"fileLocation",defaultValue:{uri:"",locationType:"UriLocation"}}},{explicitlyTyped:!0,explicitIdentifier:"textSearchAdapterId"});const GN=r.ConfigurationSchema("ApolloPlugin",{ontologies:u.types.array(ER),featureTypeOntologyName:{description:"Name of the feature type ontology",type:"string",defaultValue:"Sequence Ontology"}});function HN(e){if("LinearPileupDisplay"!==e.name)return e;const{stateModel:t}=e,r=t.views((e=>({getFirstRegion:()=>n.getContainingView(e).dynamicBlocks.contentBlocks[0],getAssembly(){const t=e.getFirstRegion(),r=n.getSession(e),{assemblyManager:o}=r,{assemblyName:i}=t,a=o.get(i);if(!a)throw new Error(`Could not find assembly named ${i}`);return a},getRefSeqId(t){const n=e.getFirstRegion(),{refName:r}=n,{refNameAliases:o}=t;if(!o)throw new Error(`Could not find aliases for ${t.name}`);const i=[...Object.entries(o)].filter((([e,t])=>e!==t)).map((([e,t])=>({_id:e,name:t??""}))),a=i.find((e=>e.name===r))?._id;if(!a)throw new Error(`Could not find refSeqId named ${r}`);return a},createFeature(){const t=e.contextMenuFeature,n=e.getAssembly(),r=e.getRefSeqId(n),o=(t.get("CIGAR").toUpperCase().match(/\d+\D/g)??[]).map((e=>[(/\D/.exec(e)??[])[0],Number.parseInt(e,10)]));let i=0;const a=t.get("start");let s;const u=[];for(const[e,t]of o)"M"===e||"="===e?void 0===s&&(s=i+a):"N"===e&&void 0!==s&&(u.push({start:s,end:i+s}),s=void 0),"I"!==e&&(i+=t);void 0!==s&&u.push({start:s,end:i+a});const c={_id:Jn().toHexString(),refSeq:r,min:t.get("start"),max:t.get("end"),type:"mRNA",strand:t.get("strand")};if(0===u.length)return c;c.children={};const[l]=u,f={_id:Jn().toHexString(),refSeq:r,min:l.start,max:l.end,type:"CDS",strand:t.get("strand")};if(c.children[f._id]=f,1===u.length){const e={_id:Jn().toHexString(),refSeq:r,min:l.start,max:l.end,type:"exon",strand:t.get("strand")};return c.children[e._id]=e,c}for(const e of u){f.min=Math.min(f.min,e.start),f.max=Math.max(f.max,e.end);const{end:n,start:o}=e,i={_id:Jn().toHexString(),refSeq:r,min:o,max:n,type:"exon",strand:t.get("strand")};c.children[i._id]=i}return c},async onPileupFeatureContext(){const t=e.createFeature(),r=e.getAssembly(),o=new nr.AddFeatureChange({changedIds:[t._id],typeName:"AddFeatureChange",assembly:r.name,addedFeature:t}),i=n.getSession(e);await i.apolloDataStore.changeManager.submit(o),i.notify("Annotation added successfully","success")}}))).views((e=>{const t=e.contextMenuItems;return{contextMenuItems:()=>e.contextMenuFeature?[...t(),{label:"Create Apollo annotation",icon:Zu,onClick:e.onPileupFeatureContext}]:t()}}));return e.stateModel=r,e}const WN=p.observer((function({onChangeCommitted:e,value:t,...n}){const[r,o]=d.useState(String(t)),[i,a]=d.useState(!1),[s,u]=d.useState(null);return d.useEffect((()=>{o(String(t))}),[t]),d.useEffect((()=>{i&&(s?.blur(),a(!1))}),[i,s]),M.default.createElement(c.TextField,{...n,type:"text",onChange:function(e){o(e.target.value)},value:r,onKeyDown:e=>{"Enter"===e.key?s?.blur():"Escape"===e.key&&(o(String(t)),a(!0))},onBlur:()=>{r!==String(t)&&e(r)},inputRef:e=>{u(e)}})})),VN=new Map([["Gene Ontology",e=>M.default.createElement(YR,{...e,ontologyName:"Gene Ontology"})],["Sequence Ontology",e=>M.default.createElement(YR,{...e,ontologyName:"Sequence Ontology"})]]),$N=["ID","Name","Alias","Target","Gap","Derives_from","Note","Dbxref","Ontology","Is_Circular"],JN=m.makeStyles()((e=>({newAttributePaper:{padding:e.spacing(2)},attributeName:{background:e.palette.secondary.main,color:e.palette.secondary.contrastText,padding:e.spacing(1)}})));function KN(e){const{onChange:t,value:n}=e;return M.default.createElement(WN,{value:n,onChangeCommitted:e=>{t(e.split(","))},variant:"outlined",fullWidth:!0,helperText:"Separate multiple values for the attribute with commas"})}const YN=p.observer((function({assembly:e,editable:t,feature:n,session:r}){const[o,i]=d.useState(""),[a,s]=d.useState(!1),{classes:l}=JN(),[f,h]=d.useState(""),p=Object.fromEntries([...n.attributes.entries()].map((([e,t])=>{if(e.startsWith("gff_")){const n=e.slice(4);return[n.charAt(0).toUpperCase()+n.slice(1),u.getSnapshot(t)]}return"_id"===e?["ID",u.getSnapshot(t)]:[e,u.getSnapshot(t)]}))),{notify:m}=r,{changeManager:g}=r.apolloDataStore;async function y(t,r){i("");const o={};if(p){const e=Object.entries({...p,[t]:r});for(const[t,n]of e)if(n&&"parent"!==t.toLowerCase())if([...VN.keys()].includes(t))o[t]=n;else switch(t){case"ID":o._id=n;break;case"Name":o.gff_name=n;break;case"Alias":o.gff_alias=n;break;case"Target":o.gff_target=n;break;case"Gap":o.gff_gap=n;break;case"Derives_from":o.gff_derives_from=n;break;case"Note":o.gff_note=n;break;case"Dbxref":o.gff_dbxref=n;break;case"Ontology_term":o.gff_ontology_term=n;break;case"Is_circular":o.gff_is_circular=n;break;default:o[t.toLowerCase()]=n}}const a=new nr.FeatureAttributeChange({changedIds:[n._id],typeName:"FeatureAttributeChange",assembly:e,featureId:n._id,attributes:o});await g.submit(a),m("Feature attributes modified successfully","success")}return M.default.createElement(M.default.Fragment,null,M.default.createElement(c.Typography,{variant:"h5"},"Attributes"),M.default.createElement(c.Grid,{container:!0,direction:"column",spacing:1},Object.entries(p).map((([e,n])=>{if(""===e)return null;const o=VN.get(e)??KN;return 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r){if(a.refSeq!==i.refName)continue;const{end:r,refSeq:s,start:u}=a,c=e.lgv.bpToPx({refName:s,coord:u,regionNumber:o});if(!c)continue;const l=c.offsetPx-e.lgv.offsetPx,f=(r-u)/e.lgv.bpPerPx;t.fillStyle="rgba(0,255,0,.2)",t.fillRect(l,1,f,100),t.fillStyle="black",t.fillText(n.name,l+1,11,f-2)}o++}}}}),{name:"LinearApolloDisplayRenderCollaborators"}))}})))}(0,t);return i.actions((e=>({afterAttach(){u.addDisposer(e,s.autorun((async()=>{if(!e.lgv.initialized||e.regionCannotBeRendered())return;if(e.lgv.bpPerPx>3)return;const t=e.seqTrackCanvas?.getContext("2d");if(!t)return;t.clearRect(0,0,e.lgv.dynamicBlocks.totalWidthPx,e.lgv.bpPerPx<=1?125:95);const r=e.lgv.bpPerPx<=1?[3,2,1,0,0,-1,-2,-3]:[3,2,1,-1,-2,-3];let o=0;for(const n of r){const r=e.theme?.palette.framesCDS.at(n)?.main;r&&(t.fillStyle=r,t.fillRect(0,o,e.lgv.dynamicBlocks.totalWidthPx,e.sequenceRowHeight)),o+=e.sequenceRowHeight}for(const[r,o]of e.regions.entries()){const i=e.session.apolloDataStore.getBackendDriver(o.assemblyName);if(!i)throw new Error("Failed to get the backend driver");const{seq:a}=await i.getSequence(o);if(!a)return;for(const[i,s]of[...a].entries()){const u=(e.lgv.bpToPx({refName:o.refName,coord:o.start+i,regionNumber:r})?.offsetPx??0)-e.lgv.offsetPx,c=3/e.lgv.bpPerPx,l=e.lgv.displayedRegions[r].reversed?u-c:u;for(let n=2;n>=0;n--)(o.start+i)%3===n&&AI(t,e.lgv.bpPerPx,l,e.sequenceRowHeight*(2-n),c,e.sequenceRowHeight,a,i,!1);if(e.lgv.bpPerPx<=1){const a=(e.lgv.bpToPx({refName:o.refName,coord:o.start+i,regionNumber:r})?.offsetPx??0)-e.lgv.offsetPx,u=1/e.lgv.bpPerPx,c=e.lgv.displayedRegions[r].reversed?a-u:a;t.beginPath(),t.fillStyle=kI(s,e.theme),t.rect(c,3*e.sequenceRowHeight,u,e.sequenceRowHeight),t.fill(),e.lgv.bpPerPx<=.1&&(t.stroke(),EI(t,c,u,s,3*e.sequenceRowHeight));const l=n.revcom(s);t.beginPath(),t.fillStyle=kI(l,e.theme),t.rect(c,4*e.sequenceRowHeight,u,e.sequenceRowHeight),t.fill(),e.lgv.bpPerPx<=.1&&(t.stroke(),EI(t,c,u,l,4*e.sequenceRowHeight))}for(let n=0;n<=2;n++)(o.start+i)%3===n&&AI(t,e.lgv.bpPerPx,l,e.sequenceRowHeight*((e.lgv.bpPerPx<=1?5:3)+n),c,e.sequenceRowHeight,a,i,!0)}}}),{name:"LinearApolloDisplayRenderSequence"}))}})))}(0,t).actions((e=>({afterAttach(){u.addDisposer(e,s.autorun((()=>{const{canvas:t,featureLayouts:r,featuresHeight:o,lgv:i}=e;if(!i.initialized||e.regionCannotBeRendered())return;const{displayedRegions:a,dynamicBlocks:s}=i,u=t?.getContext("2d");if(u){u.clearRect(0,0,s.totalWidthPx,o);for(const[t,o]of r.entries()){const r=a[t];for(const[i,a]of o.entries())for(const[o,s]of a)o>0||n.doesIntersect2(r.start,r.end,s.min,s.max)&&iP(s).draw(u,s,i,e,t)}}}),{name:"LinearApolloDisplayRenderFeatures"}))}})))}(0,t);return i.named("LinearApolloDisplayMouseEvents").volatile((()=>({apolloDragging:null,cursor:void 0,apolloHover:void 0}))).views((e=>({getMousePosition(t){const n=function(e,t){const n=e.currentTarget,{clientX:r,clientY:o}=e,{left:i,top:a}=n.getBoundingClientRect(),s=r-i,u=o-a,{coord:c,index:l,refName:f}=t.pxToBp(s);return{x:s,y:u,refName:f,bp:c,regionNumber:l}}(t,e.lgv),{bp:r,regionNumber:o,y:i}=n,a=Math.floor(i/e.apolloRowHeight),s=e.featureLayouts[o].get(a);if(!s)return n;const u=s.find((e=>r>=e[1].min&&r<=e[1].max));if(!u)return n;const[c,l]=u,f=iP(l),d=f.getFeatureFromLayout(l,r,c);return d?{...n,featureAndGlyphUnderMouse:{feature:d,topLevelFeature:l,glyph:f}}:n}}))).actions((e=>({continueDrag(t,n){if(!e.apolloDragging)throw new Error("continueDrag() called with no current drag in progress");n.stopPropagation(),e.apolloDragging={...e.apolloDragging,current:t}},setDragging(t){e.apolloDragging=t??null}}))).actions((e=>({setApolloHover(t){e.apolloHover=t},setCursor(t){e.cursor!==t&&(e.cursor=t)}}))).actions((()=>({onClick(){}})))}(0,t).actions((e=>({afterAttach(){u.addDisposer(e,s.autorun((()=>{if(!e.lgv.initialized||e.regionCannotBeRendered())return;const t=e.seqTrackOverlayCanvas?.getContext("2d");if(!t)return;t.clearRect(0,0,e.lgv.dynamicBlocks.totalWidthPx,e.lgv.bpPerPx<=1?125:95);const{apolloHover:r,lgv:o,regions:i,sequenceRowHeight:a,theme:s}=e;if(!r)return;const{feature:u}=r;for(const[e,r]of i.entries())if("CDS"===u.type){const i=u.parent;if(!i)continue;const c=i.cdsLocations.find((e=>u.min===e.at(0)?.min&&u.max===e.at(-1)?.max));if(!c)continue;for(const i of c){const c=OI(n.getFrame(i.min,i.max,u.strand??1,i.phase),o.bpPerPx),l=(o.bpToPx({refName:r.refName,coord:i.min,regionNumber:e})?.offsetPx??0)-o.offsetPx,f=(i.max-i.min)/o.bpPerPx;NI(t,s,o.displayedRegions[e].reversed?l-f:l,a,c,f)}}else{const n=RI(u.strand,o.bpPerPx),i=(o.bpToPx({refName:r.refName,coord:u.min,regionNumber:e})?.offsetPx??0)-o.offsetPx,c=u.length/o.bpPerPx;NI(t,s,o.displayedRegions[e].reversed?i-c:i,a,n,c)}}),{name:"LinearApolloDisplayRenderSeqHighlight"}))}})))}(0,t);return i.views((e=>({contextMenuItems(t){const{apolloHover:n}=e;if(!n||!t)return[];const{topLevelFeature:r}=n;return iP(r).getContextMenuItems(e)}}))).actions((e=>({startDrag(t,n,r){e.apolloDragging={start:t,current:t,feature:n,edge:r}},endDrag(){if(!e.apolloDragging)throw new Error("endDrag() called with no current drag in progress");const{current:t,edge:n,feature:r,start:o}=e.apolloDragging;if(Math.abs(t.x-o.x)<=4)return e.setDragging(),void e.setCursor();const{displayedRegions:i}=e.lgv,a=e.getAssemblyId(i[o.regionNumber].assemblyName);let s;if("max"===n){const e=r._id;s=new nr.LocationEndChange({typeName:"LocationEndChange",changedIds:[e],featureId:e,oldEnd:r.max,newEnd:t.bp,assembly:a})}else{const e=r._id;s=new nr.LocationStartChange({typeName:"LocationStartChange",changedIds:[e],featureId:e,oldStart:r.min,newStart:t.bp,assembly:a})}e.changeManager.submit(s),e.setDragging(),e.setCursor()}}))).actions((e=>({onMouseDown(t){const n=e.getMousePosition(t);CI(n)&&n.featureAndGlyphUnderMouse.glyph.onMouseDown(e,n,t)},onMouseMove(t){const n=e.getMousePosition(t);if(e.apolloDragging)return e.setCursor("col-resize"),void e.continueDrag(n,t);CI(n)?n.featureAndGlyphUnderMouse.glyph.onMouseMove(e,n,t):(e.setApolloHover(),e.setCursor())},onMouseLeave(t){e.setDragging(),e.setApolloHover();const n=e.getMousePosition(t);CI(n)&&n.featureAndGlyphUnderMouse.glyph.onMouseLeave(e,n,t)},onMouseUp(t){const n=e.getMousePosition(t);CI(n)&&n.featureAndGlyphUnderMouse.glyph.onMouseUp(e,n,t),e.apolloDragging&&e.endDrag()}}))).actions((e=>({afterAttach(){u.addDisposer(e,s.autorun((()=>{if(!e.lgv.initialized||e.regionCannotBeRendered())return;const t=e.overlayCanvas?.getContext("2d");if(!t)return;t.clearRect(0,0,e.lgv.dynamicBlocks.totalWidthPx,e.featuresHeight);const{apolloDragging:n,apolloHover:r}=e;if(!r)return;const{glyph:o}=r;o.drawHover(e,t),o.drawTooltip(e,t),n&&iP(n.feature.topLevelFeature).drawDragPreview(e,t)}),{name:"LinearApolloDisplayRenderMouseoverAndDrag"}))}})))}(0,t).props({tabularEditor:u.types.optional(xP,{})}).named("LinearApolloDisplay")}var EP={},AP=Ju.exports;Object.defineProperty(EP,"__esModule",{value:!0});var CP=EP.default=void 0;CP=EP.default=(0,AP(Ku).default)((0,N.default.jsx)("path",{d:"m12 8-6 6 1.41 1.41L12 10.83l4.59 4.58L18 14z"}),"ExpandLess");var OP={},RP=Ju.exports;Object.defineProperty(OP,"__esModule",{value:!0});var NP=OP.default=void 0;NP=OP.default=(0,RP(Ku).default)((0,N.default.jsx)("path",{d:"M16.59 8.59 12 13.17 7.41 8.59 6 10l6 6 6-6z"}),"ExpandMore");var IP={},PP=Ju.exports;Object.defineProperty(IP,"__esModule",{value:!0});var TP=IP.default=void 0;TP=IP.default=(0,PP(Ku).default)((0,N.default.jsx)("path",{d:"M12 2C6.48 2 2 6.48 2 12s4.48 10 10 10 10-4.48 10-10S17.52 2 12 2zm1 15h-2v-2h2v2zm0-4h-2V7h2v6z"}),"Error");const MP=m.makeStyles()((e=>({canvasContainer:{position:"relative",left:0},canvas:{position:"absolute",left:0},ellipses:{textOverflow:"ellipsis",overflow:"hidden"},avatar:{position:"absolute",color:e.palette.warning.light,backgroundColor:e.palette.warning.contrastText}}))),jP=p.observer((function(e){const t=c.useTheme(),{model:r}=e,{apolloRowHeight:o,contextMenuItems:i,cursor:a,featuresHeight:s,isShown:u,onMouseDown:l,onMouseLeave:f,onMouseMove:p,onMouseUp:m,regionCannotBeRendered:g,session:y,setCanvas:v,setCollaboratorCanvas:_,setOverlayCanvas:b,setSeqTrackCanvas:w,setSeqTrackOverlayCanvas:S,setTheme:x}=r,{classes:k}=MP(),E=n.getContainingView(r);d.useEffect((()=>{x(t)}),[t,x]);const[A,C]=d.useState(),[O,R]=d.useState([]),N=g();if(!u)return null;const{assemblyManager:I}=y;return M.default.createElement(M.default.Fragment,null,E.bpPerPx<=3?M.default.createElement("div",{className:k.canvasContainer,style:{width:E.dynamicBlocks.totalWidthPx,height:E.bpPerPx<=1?125:95}},M.default.createElement("canvas",{ref:async e=>{await Promise.resolve(),w(e)},width:E.dynamicBlocks.totalWidthPx,height:E.bpPerPx<=1?125:95,className:k.canvas,"data-testid":"seqTrackCanvas"}),M.default.createElement("canvas",{ref:async e=>{await Promise.resolve(),S(e)},width:E.dynamicBlocks.totalWidthPx,height:E.bpPerPx<=1?125:95,className:k.canvas,"data-testid":"seqTrackOverlayCanvas"})):null,M.default.createElement("div",{className:k.canvasContainer,style:{width:E.dynamicBlocks.totalWidthPx,height:s},onContextMenu:e=>{if(e.preventDefault(),O.length>0)R([]);else{const t=[e.clientX,e.clientY];C(t),R(i(t))}}},N?M.default.createElement(c.Alert,{severity:"warning",classes:{message:k.ellipses}},M.default.createElement(c.Tooltip,{title:N},M.default.createElement("div",null,N))):M.default.createElement(M.default.Fragment,null,M.default.createElement("canvas",{ref:async e=>{await Promise.resolve(),_(e)},width:E.dynamicBlocks.totalWidthPx,height:s,className:k.canvas,"data-testid":"collaboratorCanvas"}),M.default.createElement("canvas",{ref:async e=>{await Promise.resolve(),v(e)},width:E.dynamicBlocks.totalWidthPx,height:s,className:k.canvas,"data-testid":"canvas"}),M.default.createElement("canvas",{ref:async e=>{await Promise.resolve(),b(e)},width:E.dynamicBlocks.totalWidthPx,height:s,onMouseMove:p,onMouseLeave:f,onMouseDown:l,onMouseUp:m,className:k.canvas,style:{cursor:a??"default"},"data-testid":"overlayCanvas"}),E.displayedRegions.flatMap(((e,t)=>{const i=I.get(e.assemblyName);return[...y.apolloDataStore.checkResults.values()].filter((t=>i?.isValidRefName(t.refSeq)&&i.getCanonicalRefName(t.refSeq)===e.refName&&n.doesIntersect2(e.start,e.end,t.start,t.end))).map((n=>{const i=(E.bpToPx({refName:e.refName,coord:n.start,regionNumber:t})?.offsetPx??0)-E.offsetPx,[a]=n.ids;if(!a)return null;const{topLevelFeature:s}=a,u=parent?r.getFeatureLayoutPosition(s)?.layoutRow??0:0;return M.default.createElement(c.Tooltip,{key:n._id,title:n.message},M.default.createElement(c.Avatar,{className:k.avatar,style:{top:u*o,left:i,height:o,width:o}},M.default.createElement(TP,null)))}))})),M.default.createElement(h.Menu,{open:O.length>0,onMenuItemClick:(e,t)=>{t(),R([])},onClose:()=>{R([])},TransitionProps:{onExit:()=>{R([])}},anchorReference:"anchorPosition",anchorPosition:A?{top:A[1],left:A[0]}:void 0,style:{zIndex:t.zIndex.tooltip},menuItems:O}))))})),FP=p.observer((function({model:e}){const{height:t}=e;return M.default.createElement("div",{style:{position:"absolute",left:0,top:t/2,width:"100%"}},M.default.createElement("hr",{style:{margin:0,top:0,color:"black"}}))})),LP=m.makeStyles()((e=>({shading:{background:c.alpha(e.palette.primary.main,.2),overflowY:"scroll",overflowX:"hidden"},details:{background:e.palette.background.paper},accordionControl:{height:12,width:"100%","&:hover":{background:e.palette.action.hover},display:"flex",alignItems:"center",justifyContent:"center"},accordionRoot:{background:e.palette.divider},resizeHandle:{width:"100%",height:4,position:"absolute",cursor:"row-resize",zIndex:100},expandIcon:{},title:{userSelect:"none"},alertContainer:{display:"flex",alignItems:"center",justifyContent:"center"}}))),DP=({onResize:e})=>{const{classes:t}=LP(),n=d.useCallback((t=>{t.stopPropagation(),t.preventDefault(),e(t.movementY)}),[e]),r=d.useCallback((e=>{e.stopPropagation(),e.preventDefault(),globalThis.removeEventListener("mousemove",n),globalThis.removeEventListener("mouseup",r),globalThis.removeEventListener("mouseleave",r)}),[n]);return M.default.createElement("div",{onMouseDown:e=>{e.stopPropagation(),globalThis.addEventListener("mousemove",n),globalThis.addEventListener("mouseup",r),globalThis.addEventListener("mouseleave",r)},onClick:e=>{e.stopPropagation(),e.preventDefault()},className:t.resizeHandle})},qP=p.observer((function({onClick:e,onResize:t,open:n,title:r}){const{classes:o}=LP();return M.default.createElement("div",{className:o.accordionRoot},n&&t?M.default.createElement(DP,{onResize:t}):null,M.default.createElement("div",{className:o.accordionControl,onClick:e},M.default.createElement(n?CP:NP,{className:o.expandIcon}),r?M.default.createElement(c.Typography,{className:o.title,variant:"caption",component:"span"},r):null))})),BP=p.observer((function({model:e,...t}){const r=n.getSession(e),{ontologyManager:o}=r.apolloDataStore,{featureTypeOntology:i}=o,a=i?.dataStore,{classes:s}=LP(),{detailsHeight:u,graphical:l,height:f,isShown:h,selectedFeature:p,table:m,tabularEditor:g,toggleShown:y}=e,v=d.useRef(null);d.useEffect((()=>{!function(e,t){const{apolloRowHeight:n,selectedFeature:r}=e;if(t.current&&r){const o=e.getFeatureLayoutPosition(r);o&&t.current.scroll({top:(o.layoutRow+o.featureRow)*n,behavior:"smooth"})}}(e,v)}),[e,p]);const _=t=>{e.setDetailsHeight(u-t)};if(!a)return M.default.createElement("div",{className:s.alertContainer},M.default.createElement(c.Alert,{severity:"error"},"Could not load feature type ontology."));if(l&&m){const n=g.isShown?u:0,r=h?f-u-24:0;return M.default.createElement("div",{style:{height:f}},M.default.createElement(qP,{open:h,title:"Graphical",onClick:y}),M.default.createElement("div",{className:s.shading,ref:v,style:{height:r}},M.default.createElement(jP,{model:e,...t})),M.default.createElement(qP,{title:"Table",open:g.isShown,onClick:g.togglePane,onResize:_}),M.default.createElement("div",{className:s.details,style:{height:n}},M.default.createElement(SP,{model:e})))}return l?M.default.createElement("div",{className:s.shading,ref:v,style:{height:f}},M.default.createElement(jP,{model:e,...t})):M.default.createElement("div",{className:s.details,style:{height:f}},M.default.createElement(SP,{model:e}))}));var UP={},zP=Ju.exports;Object.defineProperty(UP,"__esModule",{value:!0});var GP=UP.default=void 0;GP=UP.default=(0,zP(Ku).default)((0,N.default.jsx)("path",{d:"M17 3H5c-1.11 0-2 .9-2 2v14c0 1.1.89 2 2 2h14c1.1 0 2-.9 2-2V7l-4-4zm-5 16c-1.66 0-3-1.34-3-3s1.34-3 3-3 3 1.34 3 3-1.34 3-3 3zm3-10H5V5h10v4z"}),"Save");const HP=u.types.model("JobsManager",{}).views((e=>({get jobStatusWidget(){const{widgets:t}=n.getSession(e);let r=t.get("JobsList");return r||(r=n.getSession(e).addWidget("JobsListWidget","JobsList")),r}}))).actions((e=>({update(t,n,r){e.jobStatusWidget.updateJobStatusMessage(t,n),r&&e.jobStatusWidget.updateJobProgressPct(t,r)},abortJob(t,r){const o=n.getSession(e);if(n.isSessionModelWithWidgets(o)){o.showWidget(e.jobStatusWidget),e.jobStatusWidget.updateJobStatusMessage(t,r??"Aborted unexpectedly");const n=e.jobStatusWidget.jobs.findIndex((e=>e.name===t));e.jobStatusWidget.addAbortedJob({...e.jobStatusWidget.jobs[n]}),e.jobStatusWidget.removeJob(t),o.notify("Job aborted","info")}},runJob(t){const r=n.getSession(e);n.isSessionModelWithWidgets(r)&&(r.showWidget(e.jobStatusWidget),e.jobStatusWidget.addJob(t))},done(t){const r=n.getSession(e);n.isSessionModelWithWidgets(r)&&(r.showWidget(e.jobStatusWidget),e.jobStatusWidget.removeJob(t.name),e.jobStatusWidget.addFinishedJob({name:t.name,statusMessage:"All operations successful",progressPct:100,cancelCallback:t.cancelCallback}))}})));class WP{clientStore;constructor(e){this.clientStore=e}}class VP{dataStore;constructor(e){this.dataStore=e}recentChanges=[];async submit(e,t={}){const{addToRecents:r=!0,submitToBackend:o=!0,updateJobsManager:i=!1}=t,a=n.getSession(this.dataStore),s=new AbortController,{jobsManager:u}=n.getSession(this.dataStore),c={name:e.typeName,statusMessage:"Pre-validating",progressPct:0,cancelCallback:()=>{s.abort()}};i&&u.runJob(c);const l=await nr.validationRegistry.frontendPreValidate(e);if(!l.ok){const e=`Pre-validation failed: "${l.resultsMessages}"`;return i&&u.abortJob(c.name,e),void a.notify(e,"error")}try{await e.execute(this.dataStore)}catch(e){return i&&u.abortJob(c.name,String(e)),console.error(e),void a.notify(String(e),"error")}if((await nr.validationRegistry.frontendPostValidate(e,this.dataStore)).ok||await this.revert(e),o){i&&u.update(c.name,"Submitting to driver");const{collaborationServerDriver:n,getBackendDriver:r}=this.dataStore,o=z.isAssemblySpecificChange(e)?r(e.assembly):n;let s;try{s=await o.submitChange(e,t)}catch(t){return i&&u.abortJob(c.name,String(t)),console.error(t),a.notify(String(t),"error"),void await this.revert(e,!1)}if(!s.ok){const t=`Post-validation failed: "${l.resultsMessages}"`;return i&&u.abortJob(c.name,t),a.notify(t,"error"),void await this.revert(e,!1)}e.notification&&a.notify(e.notification,"success")}r&&this.recentChanges.push(e),i&&u.done(c)}async revert(e,t=!0){const n=e.getInverse();return this.submit(n,{submitToBackend:t,addToRecents:!1})}async revertLastChange(){const e=this.recentChanges.pop();if(e)return this.revert(e);n.getSession(this.dataStore).notify("No changes to undo!","warning")}}class $P extends WP{inFlight=new Map;async fetch(e,t,n){return e.getFetcher({locationType:"UriLocation",uri:t.toString()})(t,n)}async searchFeatures(e,t){const n=this.clientStore.getInternetAccount(t[0]),{baseURL:r}=n,o=new URL("features/searchFeatures",r),i=new URLSearchParams({assemblies:t.join(","),term:e});o.search=i.toString();const a=o.toString(),s=await this.fetch(n,a);if(!s.ok){const e=await md(s,"searchFeatures failed");throw new Error(e)}return s.json()}async getFeatures(e){const{assemblyName:t,end:o,refName:i,start:a}=e,{assemblyManager:s}=n.getSession(this.clientStore),u=s.get(t);if(!u)throw new Error(`Could not find assembly with name "${t}"`);const{ids:c}=r.getConf(u,["sequence","metadata"]),l=c[i];if(!l)throw new Error(`Could not find refSeq "${i}"`);const f=this.clientStore.getInternetAccount(t),{baseURL:d}=f,h=new URL("features/getFeatures",d),p=new URLSearchParams({refSeq:l,start:String(a),end:String(o)});h.search=p.toString();const m=h.toString(),g=await this.fetch(f,m);if(!g.ok){const e=await md(g,"getFeatures failed");throw new Error(e)}return this.checkSocket(t,i,f),g.json()}checkSocket(e,t,n){const{socket:r}=n,o=n.retrieveToken(),i=`${e}-${t}`,a=new VP(this.clientStore);r.hasListeners(i)||r.on(i,(async e=>{if(n.setLastChangeSequenceNumber(Number(e.changeSequence)),e.userSessionId!==o&&e.channel===i){const t=z.Change.fromJSON(e.changeInfo);await a.submit(t,{submitToBackend:!1})}}))}async getSequence(e){const t=`${e.refName}:${e.start}-${e.end}`,o=this.inFlight.get(t),{assemblyName:i,end:a,refName:s,start:u}=e,{assemblyManager:c}=n.getSession(this.clientStore),l=c.get(i);if(!l)throw new Error(`Could not find assembly with name "${i}"`);const{ids:f}=r.getConf(l,["sequence","metadata"]),d=f[s];if(!d)throw new Error(`Could not find refSeq "${s}"`);if(o)return{seq:await o,refSeq:d};let h=this.clientStore.assemblies.get(i);h||(h=this.clientStore.addAssembly(i));let p=h.refSeqs.get(d);p||(p=h.addRefSeq(d,s));const m=p.getSequence(u,a);if(m.length===a-u)return{seq:m,refSeq:d};const g=this.clientStore.getInternetAccount(i),{baseURL:y}=g,v=new URL("sequence",y),_=new URLSearchParams({refSeq:d,start:String(u),end:String(a)});v.search=_.toString();const b=v.toString(),w=this.getSeqFromServer(g,b,p,u,a);this.inFlight.set(t,w);const S=await w;return this.checkSocket(i,s,g),this.inFlight.delete(t),{seq:S,refSeq:d}}async getSeqFromServer(e,t,n,r,o){const i=await this.fetch(e,t);if(!i.ok){let e;try{e=await i.text()}catch{e=""}throw new Error(`getSequence failed: ${i.status} (${i.statusText})${e?` (${e})`:""}`)}const a=await i.text();return n.addSequence({sequence:a,start:r,stop:o}),a}async getRefNameAliases(e){const{assemblyManager:t}=n.getSession(this.clientStore);if(!t.get(e))throw new Error(`Could not find assembly with name "${e}"`);const r=this.clientStore.getInternetAccount(e),{baseURL:o}=r,i=new URL("refSeqs",o),a=new URLSearchParams({assembly:e});i.search=a.toString();const s=i.toString(),u=await this.fetch(r,s);if(!u.ok){let e;try{e=await u.text()}catch{e=""}throw new Error(`getRefNameAliases failed: ${u.status} (${u.statusText})${e?` (${e})`:""}`)}return(await u.json()).map((e=>({refName:e.name,aliases:[e._id,...e.aliases],uniqueId:`alias-${e._id}`})))}async getRegions(e){const{assemblyManager:t}=n.getSession(this.clientStore);if(!t.get(e))throw new Error(`Could not find assembly with name "${e}"`);const r=this.clientStore.getInternetAccount(e),{baseURL:o}=r,i=new URL("refSeqs",o),a=new URLSearchParams({assembly:e});i.search=a.toString();const s=i.toString(),u=await this.fetch(r,s);if(!u.ok){let e;try{e=await u.text()}catch{e=""}throw new Error(`getRegions failed: ${u.status} (${u.statusText})${e?` (${e})`:""}`)}return(await u.json()).map((e=>({refName:e.name,start:0,end:e.length})))}getAssemblies(e){const{assemblyManager:t}=n.getSession(this.clientStore);return t.assemblies.filter((t=>{const n=r.getConf(t,["sequence","metadata"]);return!(!(n&&n.apollo&&n.internetAccountConfigId)||e&&n.internetAccountConfigId!==e)}))}async submitChange(e,t={}){const{internetAccountId:n}=t,r=this.clientStore.getInternetAccount("assembly"in e?e.assembly:void 0,n),{baseURL:o}=r,i=new URL("changes",o).href,a=await this.fetch(r,i,{method:"POST",body:JSON.stringify(e.toJSON()),headers:{"Content-Type":"application/json"}});if(!a.ok){const e=await md(a,"submitChange failed");throw new Error(e)}const s=new nr.ValidationResultSet;return a.ok||(s.ok=!1),s}}class JP extends WP{async getFeatures(){return[[],[]]}async getSequence(e){const{assemblyName:t,end:n,refName:r,start:o}=e,i=this.clientStore.assemblies.get(t);if(!i)return{seq:"",refSeq:r};const a=i.refSeqs.get(r);return a?{seq:a.getSequence(o,n),refSeq:r}:{seq:"",refSeq:r}}async getRefNameAliases(e){const t=this.clientStore.assemblies.get(e),n=[];if(!t)return n;for(const[,e]of t.refSeqs)n.push({refName:e.name,aliases:[e._id],uniqueId:`alias-${e._id}`});return n}async getRegions(e){const t=this.clientStore.assemblies.get(e);if(!t)return[];const n=[];for(const[,r]of t.refSeqs)n.push({assemblyName:e,refName:r.name,start:r.sequence[0].start,end:r.sequence[0].stop});return n}getAssemblies(){const{assemblyManager:e}=n.getSession(this.clientStore);return e.assemblies.filter((e=>{const t=r.getConf(e,["sequence","metadata"]);return Boolean(t&&t.apollo&&!t.file&&!t.internetAccountConfigId)}))}async submitChange(e,t={}){const{clientStore:n}=this,{assemblies:r}=n;n.clearCheckResults();for(const[,e]of r)if("InMemoryFileDriver"===e.backendDriverType){const t=await pd(e);n.addCheckResults(t)}return new nr.ValidationResultSet}async searchFeatures(e,t){return[]}}class KP extends WP{async loadAssembly(e){const{assemblyManager:t}=n.getSession(this.clientStore),o=t.get(e);if(!o)throw new Error(`Assembly ${e} not found`);const{file:i}=r.getConf(o,["sequence","metadata"]),a=require("node:fs");return hd(e,await a.promises.readFile(i,"utf8"),this.clientStore)}async getAssembly(e){let t=this.clientStore.assemblies.get(e);return t||(t=await this.loadAssembly(e)),t}async getRefNameAliases(e){const t=await this.getAssembly(e),n=[];for(const[,e]of t.refSeqs)n.push({refName:e.name,aliases:[e._id],uniqueId:`alias-${e._id}`});return n}async getFeatures(e){return await this.getAssembly(e.assemblyName),[[],[]]}async getSequence(e){const{assemblyName:t,end:n,refName:r,start:o}=e,i=(await this.getAssembly(t)).refSeqs.get(r);if(!i)throw new Error(`refSeq ${r} not found in client data store`);return{seq:i.getSequence(o,n),refSeq:r}}async getRegions(e){const t=await this.getAssembly(e),n=[];for(const[,r]of t.refSeqs)n.push({assemblyName:e,refName:r.name,start:r.sequence[0].start,end:r.sequence[0].stop});return n}getAssemblies(){const{assemblyManager:e}=n.getSession(this.clientStore);return e.assemblies.filter((e=>{const t=r.getConf(e,["sequence","metadata"]);return Boolean(t&&t.apollo&&!t.internetAccountConfigId&&t.file)}))}async submitChange(e){if(!z.isAssemblySpecificChange(e))throw new Error(`Cannot use this type of change with local file: "${e.typeName}"`);const{assemblyManager:t}=n.getSession(this.clientStore),o=t.get(e.assembly);if(!o)throw new Error(`Could not find assembly with name "${e.assembly}"`);const{file:i}=r.getConf(o,["sequence","metadata"]),a=this.clientStore.assemblies.get(e.assembly);if(!a)throw new Error(`Could not find assembly in client with name "${e.assembly}"`);const s=new Set(...a.refSeqs.keys()),{checkResults:c}=this.clientStore;for(const e of c.values())s.has(e.refSeq)&&c.delete(e._id);const l=await pd(a);this.clientStore.addCheckResults(l);const f=[{directive:"gff-version",value:"3"}];for(const[,e]of a.refSeqs)f.push({directive:"sequence-region",value:`${e.name} 1 ${e.sequence[0].stop}`});for(const e of a.comments)f.push({comment:e});for(const[,e]of a.refSeqs){const{features:t}=e;for(const[,e]of t)f.push(nr.annotationFeatureToGFF3(u.getSnapshot(e)))}for(const[,e]of a.refSeqs){const[t]=e.sequence,n=nr.splitStringIntoChunks(t.sequence,80).join("\n");f.push({id:e.name,description:e.description,sequence:n})}const d=dd.formatSync(f),h=require("node:fs");return await h.promises.writeFile(i,d,"utf8"),new nr.ValidationResultSet}async searchFeatures(e,t){return[]}}function YP(e,t){const o=new AbortController,{signal:i}=o,a=e.evaluateExtensionPoint("Apollo-extendAnnotationFeature",rI.AnnotationFeatureModel),c=function(e){return u.types.model("ClientDataStore",{typeName:u.types.optional(u.types.literal("Client"),"Client"),assemblies:u.types.map(rI.ApolloAssembly),checkResults:u.types.map(rI.CheckResult),ontologyManager:u.types.optional(xR,{})}).views((t=>({get internetAccounts(){return u.getRoot(t).internetAccounts},get pluginConfiguration(){return u.getRoot(t).jbrowse.configuration.ApolloPlugin},getFeature:n=>u.resolveIdentifier(e,t.assemblies,n)}))).actions((e=>({addAssembly(t,n){const r={_id:t,refSeqs:{}};return n&&(r.backendDriverType=n),e.assemblies.put(r)},addFeature(t,n){const r=e.assemblies.get(t);if(!r)throw new Error(`Could not find assembly "${t}" to add feature "${n._id}"`);const o=r.refSeqs.get(n.refSeq);if(!o)throw new Error(`Could not find refSeq "${n.refSeq}" to add feature "${n._id}"`);o.features.put(n)},deleteFeature(t){const n=e.getFeature(t);if(!n)throw new Error(`Could not find feature "${t}" to delete`);const{_id:r,parent:o}=n;o?o.deleteChild(t):u.getParentOfType(n,rI.ApolloRefSeq).deleteFeature(r)},deleteAssembly(t){e.assemblies.delete(t)},addCheckResult(t){e.checkResults.put(t)},addCheckResults(t){for(const n of t)e.checkResults.has(n._id)||e.checkResults.put(n)},deleteCheckResult(t){e.checkResults.delete(t)},clearCheckResults(){e.checkResults.clear()}}))).volatile((e=>({changeManager:new VP(e),collaborationServerDriver:new $P(e),inMemoryFileDriver:new JP(e),desktopFileDriver:n.isElectron?new KP(e):void 0}))).actions((e=>({afterCreate(){u.addDisposer(e,s.autorun((()=>{const{ontologyManager:t,pluginConfiguration:n}=e,o=n.ontologies;for(const e of o||[]){const[n,o,i,a]=[r.readConfObject(e,"name"),r.readConfObject(e,"version"),r.readConfObject(e,"source"),r.readConfObject(e,"textIndexFields")];t.findOntology(n)||t.addOntology(n,o,i,{textIndexing:{indexFields:a}})}})))}}))).views((e=>({getBackendDriver(t){if(!t)return e.collaborationServerDriver;const o=n.getSession(e),{assemblyManager:i}=o,a=i.get(t);if(!a)return e.collaborationServerDriver;const{file:s,internetAccountConfigId:u}=r.getConf(a,["sequence","metadata"]);return n.isElectron&&s?e.desktopFileDriver:u?e.collaborationServerDriver:e.inMemoryFileDriver},getInternetAccount(t,o){if(!(t??o))throw new Error("Must provide either assemblyName or internetAccountId");let i=o;if(t&&!i){const{assemblyManager:o}=n.getSession(e),a=o.get(t);if(!a)throw new Error(`No assembly found with name ${t}`);({internetAccountConfigId:i}=r.getConf(a,["sequence","metadata"]))}const{internetAccounts:a}=e,s=a.find((e=>e.internetAccountId===i));if(!s)throw new Error(`No InternetAccount found with config id ${o}`);return s}}))).actions((e=>({loadFeatures:u.flow((function*(t){for(const n of t){const t=e.getBackendDriver(n.assemblyName);if(!t)return;const[r,o]=yield t.getFeatures(n);if(0===r.length)continue;const{assemblyName:i,refName:a}=n;let s=e.assemblies.get(i);s||(s=e.assemblies.put({_id:i,refSeqs:{}}));const[u]=r;let c=s.refSeqs.get(u.refSeq);c||(c=s.refSeqs.put({_id:u.refSeq,name:a,features:{}}));for(const e of r)c.features.has(e._id)||c.features.put(e);e.addCheckResults(o)}})),loadRefSeq:u.flow((function*(t){for(const n of t){const t=e.getBackendDriver(n.assemblyName);if(!t)return;const{refSeq:r,seq:o}=yield t.getSequence(n),{assemblyName:i,end:a,refName:s,start:u}=n;let c=e.assemblies.get(i);c||(c=e.assemblies.put({_id:i,refSeqs:{}}));let l=c.refSeqs.get(r);l||(l=c.refSeqs.put({_id:r,name:s,sequence:[]})),l.addSequence({start:u,stop:a,sequence:o})}}))})))}(a),l=t.props({apolloDataStore:u.types.optional(c,{typeName:"Client"}),apolloSelectedFeature:u.types.safeReference(a),jobsManager:u.types.optional(HP,{})}).extend((()=>{const e=s.observable.array([]);return{views:{get collaborators(){return e}},actions:{addOrUpdateCollaborator(t){const n=e.find((e=>e.id===t.id));n?n.locations=t.locations:e.push(t)}}}})).actions((e=>({apolloSetSelectedFeature(t){e.apolloSelectedFeature=t},addApolloTrackConfig(t,n){const o=`apollo_track_${t.name}`;e.tracks.some((e=>e.trackId===o))||e.addTrackConf({type:"ApolloTrack",trackId:o,name:`Annotations (${r.getConf(t,"displayName")||t.name})`,assemblyNames:[t.name],textSearching:{textSearchAdapter:{type:"ApolloTextSearchAdapter",trackId:o,assemblyNames:[t.name],textSearchAdapterId:`apollo_search_${t.name}`,...n?{baseURL:{uri:n,locationType:"UriLocation"}}:{}}},displays:[{type:"LinearApolloDisplay",displayId:`${o}-LinearApolloDisplay`},{type:"SixFrameFeatureDisplay",displayId:`${o}-SixFrameFeatureDisplay`}]})},broadcastLocations(){const{internetAccounts:t}=u.getRoot(e),n=[];for(const t of e.views){if("LinearGenomeView"!==t.type)return;const r=t;if(r.initialized){const{dynamicBlocks:t}=r;t.forEach((t=>{if(void 0!==t.regionNumber){const{assemblyName:r,end:o,refName:i,start:a}=t,s=e.apolloDataStore.assemblies.get(r);s&&"CollaborationServerDriver"===s.backendDriverType&&n.push({assemblyName:r,refName:i,start:a,end:o})}}))}}if(0===n.length){for(const e of t)"baseURL"in e&&e.postUserLocation([]);return}const r=[];for(const e of t)if("baseURL"in e){for(const e of n)r.push({assemblyId:e.assemblyName,refSeq:e.refName,start:e.start,end:e.end});e.postUserLocation(r)}}}))).actions((e=>({afterCreate:u.flow((function*(){const t=u.getSnapshot(e),{id:n,name:r}=t;u.applySnapshot(e,{name:r,id:n});const{internetAccounts:o,jbrowse:a}=u.getRoot(e);s.autorun((()=>{const t=[];for(const n of e.views){if("LinearGenomeView"!==n.type)return;const r=n;if(r.initialized){const{dynamicBlocks:n}=r;n.forEach((n=>{if(void 0!==n.regionNumber){const{assemblyName:r,end:o,refName:i,start:a}=n,s=e.apolloDataStore.assemblies.get(r);s&&"CollaborationServerDriver"===s.backendDriverType&&t.push({assemblyName:r,refName:i,start:a,end:o})}}))}}if(0===t.length){for(const e of o)"baseURL"in e&&e.postUserLocation([]);return}const n=[];for(const e of o)if("baseURL"in e){for(const e of t)n.push({assemblyId:e.assemblyName,refSeq:e.refName,start:e.start,end:e.end});e.postUserLocation(n)}}),{name:"ApolloSession"});for(const n of o){if("ApolloInternetAccount"!==n.type)continue;const{baseURL:r}=n,o=new URL("jbrowse/config.json",r).href,s=n.getFetcher({locationType:"UriLocation",uri:o});let c,l;try{c=yield s(o,{signal:i})}catch(e){console.error(e);continue}if(c.ok){try{l=yield c.json()}catch(e){console.error(e);continue}u.applySnapshot(a,l),u.applySnapshot(e,t)}else{const e=yield md(c,"Failed to fetch assemblies");console.error(e)}}})),beforeDestroy(){o.abort("destroying session model")}}))).views((e=>{const t=e.getTrackActionMenuItems;return{getTrackActionMenuItems(n){if("ApolloTrack"===n.type||"ReferenceSequenceTrack"===n.type)return t?.(n);const o=r.readConfObject(n,"trackId");return o.endsWith("-sessionTrack")?[...t?.(n)??[],{label:"Save track to Apollo",onClick:async()=>{const{internetAccounts:t,jbrowse:r}=u.getRoot(e),i=u.getSnapshot(r);let a;a=nr.filterJBrowseConfig(i),0===Object.keys(a).length&&(a=void 0);const s={...u.getSnapshot(n),trackId:o.slice(0,o.length-13)};for(const n of t){if("ApolloInternetAccount"!==n.type)continue;const t=new nr.ImportJBrowseConfigChange({typeName:"ImportJBrowseConfigChange",oldJBrowseConfig:a,newJBrowseConfig:{...a,tracks:a?.tracks&&[...a.tracks,s]}}),{internetAccountId:r}=n;await e.apolloDataStore.changeManager.submit(t,{internetAccountId:r});const{notify:o}=e;o("Track added","success")}e.deleteTrackConf(n),r.addTrackConf(s)},icon:GP}]:[...t?.(n)??[],{label:"Remove track from Apollo",onClick:async()=>{const{internetAccounts:t,jbrowse:r}=u.getRoot(e),i=u.getSnapshot(r);let a;a=nr.filterJBrowseConfig(i),0===Object.keys(a).length&&(a=void 0);const s=a?.tracks?.filter((e=>e.trackId!==o));for(const n of t){if("ApolloInternetAccount"!==n.type)continue;const t=new nr.ImportJBrowseConfigChange({typeName:"ImportJBrowseConfigChange",oldJBrowseConfig:a,newJBrowseConfig:{...a,tracks:s}}),{internetAccountId:r}=n;await e.apolloDataStore.changeManager.submit(t,{internetAccountId:r});const{notify:o}=e;o("Track removed","success")}e.deleteTrackConf(n),r.deleteTrackConf(n)},icon:GP}]}}}));return u.types.snapshotProcessor(l,{postProcessor(e,t){e.apolloSelectedFeature=void 0;const n=Object.fromEntries(Object.entries(e.apolloDataStore.assemblies).filter((([,e])=>"InMemoryFileDriver"===e.backendDriverType)));if(e.apolloDataStore={typeName:"Client",assemblies:n,checkResults:{}},!t)return e;const{apolloDataStore:r}=t,{checkResults:o}=r;for(const[,t]of o){const[n]=t.ids;if(!n)continue;const o=r.assemblies.get(n.assemblyId);o&&"InMemoryFileDriver"===o.backendDriverType&&(e.apolloDataStore.checkResults[t._id]=u.getSnapshot(t))}return e}})}const ZP={0:2,1:1,2:0},XP={3:0,4:1,5:2};function QP(e,t){const o=e.getPlugin("LinearGenomeViewPlugin"),{BaseLinearDisplay:i}=o.exports;return i.named("SixFrameFeatureDisplay").props({type:u.types.literal("SixFrameFeatureDisplay"),configuration:r.ConfigurationReference(t),apolloRowHeight:20,detailsMinHeight:200,showStartCodons:!1,showStopCodons:!0,showIntronLines:!0}).volatile((()=>({apolloFeatureUnderMouse:void 0,apolloRowUnderMouse:void 0}))).views((e=>{const{configuration:t,renderProps:n}=e;return{renderProps:()=>({...n(),...k.getParentRenderProps(e),config:t.renderer})}})).views((e=>({get regions(){let t;try{({blockDefinitions:t}=e)}catch{return[]}return t.contentBlocks.map((({assemblyName:e,end:t,refName:n,start:r})=>({assemblyName:e,refName:n,start:r,end:t})))},regionCannotBeRendered(){const t=n.getContainingView(e);if(t&&t.bpPerPx>=200)return"Zoom in to see annotations"},get session(){return n.getSession(e)}}))).actions((e=>{let t=[];return{afterAttach(){u.addDisposer(e,s.autorun((()=>{const r=n.getSession(e);if(n.getContainingView(e).initialized){if(e.regionCannotBeRendered())return;const n=[],o=[];for(const r of e.blockDefinitions.contentBlocks)n.push(r.key),t.includes(r.key)||o.push(r);r.apolloDataStore.loadFeatures(o.map((({assemblyName:e,end:t,refName:n,start:r})=>({assemblyName:e,refName:n,start:r,end:t})))),r.apolloDataStore.loadRefSeq(o.map((({assemblyName:e,end:t,refName:n,start:r})=>({assemblyName:e,refName:n,start:r,end:t})))),t=n}}),{name:"SixFrameFeatureDisplay"}))}}})).views((e=>({get rendererTypeName(){return e.configuration.renderer.type},get changeManager(){return n.getSession(e).apolloDataStore.changeManager},get sequence(){const{regions:t}=e,r=n.getSession(e),o=new Map;for(const e of t){const t=r.apolloDataStore.assemblies.get(e.assemblyName),n=t?.getByRefName(e.refName),i=n?.getSequence(e.start,e.end);o.set(e.start,i??"")}return o},get features(){const{regions:t}=e,r=n.getSession(e),o=new Map;for(const e of t){const t=r.apolloDataStore.assemblies.get(e.assemblyName),n=t?.getByRefName(e.refName);let i=o.get(e.refName);i||(i=new Map,o.set(e.refName,i));for(const[t,r]of n?.features.entries()??new Map)e.start<r.end&&e.end>r.start&&i.set(t,r)}return o},get featuresMinMax(){const e={};for(const[t,n]of this.features||[]){let r,o;for(const[,e]of n)void 0===r&&({min:r}=e),void 0===o&&({max:o}=e),e.min<r&&({min:r}=e),e.max>o&&({max:o}=e);void 0!==r&&void 0!==o&&(e[t]=[r,o])}return e},get codonLayout(){const e=new Map;let t="",r=0;for(const[e,n]of this.sequence||[])n&&(t||(r=e),t+=n);for(let o=0;o<6;o++){const i=[],a=[],s=o in XP;let u,c,l;s?(u=(t.length+r)%3,c=(XP[o]+u+3)%3,l=n.reverse(t).slice(c)):(u=3-r%3,c=(ZP[o]+u+3)%3,l=t.slice(c));for(let e=0;e<l.length;e+=3){const t=l.slice(e,e+3),o=s?n.reverse(n.revcom(t)):t,u=s?r+l.length-(3+e):r+e+c;n.defaultStarts.includes(o.toUpperCase())?i.push(u):n.defaultStops.includes(o.toUpperCase())&&a.push(u)}e.set(o,{starts:i,stops:a})}return e},get featureLayout(){const e=new Map;for(const[t,n]of this.features||[]){if(!n)continue;const r=this.featuresMinMax[t];if(!r)continue;const[o,i]=r,a=[],s=6;for(let t=0;t<s;t++){const t=a.length;a[t]=Array.from({length:i-o}),e.set(t,[])}for(const t of[...n.values()].sort(((e,t)=>{const{max:n,min:r}=e,{max:o,min:i}=t;return r-i||n-o})))for(const[,n]of t.children??new Map)if("mRNA"===n.type)for(const[,r]of n.children||new Map){let o;if("CDS"===r.type){let i;r.discontinuousLocations.length>0?({discontinuousLocations:i}=r):i=[r];for(const r of i){const i=r.start+3,a=r.end-3;for(const[s,{stops:u}]of this.codonLayout)if(s<3&&1===t.strand||s>=3&&-1===t.strand){const t=u.filter((e=>e>=i&&e<=a));if(0===t.length){o=s;const t=e.get(o);t?.push([n.featureId,r]);break}}}}}}return e},getAssemblyId(t){const{assemblyManager:r}=n.getSession(e),o=r.get(t);if(!o)throw new Error(`Could not find assembly named ${t}`);return o.name},get selectedFeature(){return n.getSession(e).apolloSelectedFeature},get setSelectedFeature(){return n.getSession(e).apolloSetSelectedFeature}}))).actions((e=>({setSelectedFeature(t){n.getSession(e).apolloSetSelectedFeature(t)},setApolloFeatureUnderMouse(t){e.apolloFeatureUnderMouse=t},setApolloRowUnderMouse(t){e.apolloRowUnderMouse=t},toggleShowStartCodons(){e.showStartCodons=!e.showStartCodons},toggleShowStopCodons(){e.showStopCodons=!e.showStopCodons},toggleShowIntronLines(){e.showIntronLines=!e.showIntronLines}}))).views((e=>({get highestRow(){return 0===e.featureLayout.size?0:Math.max(...e.featureLayout.keys())},get featuresHeight(){return(this.highestRow+1)*e.apolloRowHeight},get detailsHeight(){return Math.max(e.detailsMinHeight,e.height-this.featuresHeight)},trackMenuItems:()=>[{label:"Show start codons",type:"checkbox",checked:e.showStartCodons,onClick:()=>{e.toggleShowStartCodons()}},{label:"Show stop codons",type:"checkbox",checked:e.showStopCodons,onClick:()=>{e.toggleShowStopCodons()}},{label:"Show intron lines",type:"checkbox",checked:e.showIntronLines,onClick:()=>{e.toggleShowIntronLines()}}]})))}var eT=r.ConfigurationSchema("ApolloRefNameAliasAdapter",{assemblyId:{type:"string",defaultValue:""}},{explicitlyTyped:!0});const tT="undefined"==typeof sessionStorage;class nT extends S.BaseAdapter{refNameAliases;async getRefNameAliases(){const e=r.readConfObject(this.config,"assemblyId");if(!tT){const t=this.pluginManager?.rootModel?.session?.apolloDataStore;if(!t)throw new Error("No Apollo data store found");const n=t.getBackendDriver(e);return await n.getRefNameAliases(e)}const t=await new Promise(((t,n)=>{const r=setTimeout((()=>{n(new Error("timeout"))}),2e4),o=oN(),i=e=>{const n=e.data;(function(e){return"object"==typeof e&&null!==e&&"apollo"in e&&!0===e.apollo&&"refNameAliases"in e})(n)&&n.messageId===o&&(clearTimeout(r),removeEventListener("message",i),t(n.refNameAliases))};addEventListener("message",i),rpcServer.emit("apollo",{apollo:!0,method:"getRefNameAliases",assembly:e,messageId:o})}));return this.refNameAliases=t,t}freeResources(){}}const rT="WorkerGlobalScope"in globalThis;for(const[e,t]of Object.entries(nr.changes))z.changeRegistry.registerChange(e,t);const oT=new nr.CDSCheck;z.checkRegistry.registerCheck(oT.name,oT),nr.validationRegistry.registerValidation(new nr.CoreValidation),nr.validationRegistry.registerValidation(new nr.ParentChildValidation),e.default=class extends C.default{name="ApolloPlugin";version="0.3.0";configurationSchema=GN;install(e){!function(e){e.addAdapterType((()=>new D.default({name:"ApolloSequenceAdapter",configSchema:PN,adapterMetadata:{category:void 0,hiddenFromGUI:!0,description:void 0},AdapterClass:IN})))}(e),function(e){e.addAdapterType((()=>new D.default({name:"ApolloRefNameAliasAdapter",configSchema:eT,adapterMetadata:{category:void 0,hiddenFromGUI:!0,description:void 0},AdapterClass:nT})))}(e),function(e){e.addTextSearchAdapterType((()=>new o.TextSearchAdapterType({name:"ApolloTextSearchAdapter",displayName:"Apollo text search adapter",configSchema:zN,AdapterClass:UN,description:"Apollo Text Search adapter"})))}(e),e.addWidgetType((()=>{const e=r.ConfigurationSchema("ApolloFeatureDetailsWidget",{});return new o.WidgetType({name:"ApolloFeatureDetailsWidget",heading:"Apollo feature details",configSchema:e,stateModel:lI,ReactComponent:nI})})),e.addWidgetType((()=>{const e=r.ConfigurationSchema("ApolloTranscriptDetails",{});return new o.WidgetType({name:"ApolloTranscriptDetails",heading:"Apollo transcript details",configSchema:e,stateModel:fI,ReactComponent:yI})})),e.addTrackType((()=>{const t=r.ConfigurationSchema("ApolloTrack",{adapter:""},{baseConfiguration:o.createBaseTrackConfig(e),explicitIdentifier:"trackId"});return new o.TrackType({name:"ApolloTrack",configSchema:t,stateModel:o.createBaseTrackModel(e,"ApolloTrack",t)})})),e.addInternetAccountType((()=>new o.InternetAccountType({name:"ApolloInternetAccount",configSchema:Xu,stateModel:kN(Xu)}))),e.addDisplayType((()=>new o.DisplayType({name:"LinearApolloDisplay",configSchema:vI,stateModel:kP(0,vI),trackType:"ApolloTrack",viewType:"LinearGenomeView",ReactComponent:BP}))),e.addDisplayType((()=>{const t=function(e){const t=e.getPlugin("LinearGenomeViewPlugin"),{baseLinearDisplayConfigSchema:n}=t.exports;return r.ConfigurationSchema("SixFrameFeatureDisplay",{renderer:jN,height:{type:"number",defaultValue:120}},{baseConfiguration:n,explicitlyTyped:!0})}(e),n=function(e){const t=e.getPlugin("LinearGenomeViewPlugin");if(!t)throw new Error("LinearGenomeView plugin not found");const{BaseLinearDisplayComponent:n}=t.exports;return p.observer((function({model:e,...t}){const{classes:r}=LP(),{height:o,selectedFeature:i}=e;let{detailsHeight:a}=e;return i||(a=0),M.default.createElement("div",{style:{height:e.height}},M.default.createElement("div",{className:r.shading,style:{height:o-a}},M.default.createElement(n,{model:e,...t})),M.default.createElement("div",{className:"testTrackLines"},M.default.createElement(FP,{model:e})))}))}(e);return new o.DisplayType({name:"SixFrameFeatureDisplay",configSchema:t,stateModel:QP(e,t),trackType:"ApolloTrack",viewType:"LinearGenomeView",ReactComponent:n})})),e.addRendererType((()=>new FN({name:"ApolloSixFrameRenderer",ReactComponent:MN,configSchema:jN,pluginManager:e}))),e.addToExtensionPoint("Core-extendSession",YP.bind(this,e)),e.addToExtensionPoint("Core-extendPluggableElement",(e=>{if("LinearGenomeView"===e.name){const{stateModel:t}=e,r=t.views((e=>{const t=e.rubberBandMenuItems;return{rubberBandMenuItems:()=>[...t(),{label:"Add new feature",icon:Zu,onClick:()=>{const t=n.getSession(e),{leftOffset:r,rightOffset:o}=e,i=e.getSelectedRegions(r,o);t.queueDialog((e=>[IR,{session:t,handleClose:()=>{e()},region:i[0],changeManager:t.apolloDataStore.changeManager}]))}}]}}));e.stateModel=r}return e})),e.addToExtensionPoint("Core-extendPluggableElement",HN),rT||e.addToExtensionPoint("Core-extendWorker",(t=>"on"in t&&t.on?(t.on("apollo",(async n=>{if("object"!=typeof(r=n)||null===r||!("apollo"in r)||!0!==r.apollo)return;var r;const{apollo:o,messageId:i,method:a}=n;switch(a){case"getSequence":{const{region:r}=n,{assemblyName:a}=r,s=e.rootModel?.session?.apolloDataStore;if(!s)break;const u=s.getBackendDriver(a),{seq:c}=await u.getSequence(r);t.workers[0].postMessage({apollo:o,messageId:i,sequence:c});break}case"getRegions":{const{assembly:r}=n,a=e.rootModel?.session?.apolloDataStore;if(!a)break;const s=a.getBackendDriver(r),u=await s.getRegions(r);t.workers[0].postMessage({apollo:o,messageId:i,regions:u});break}case"getRefNameAliases":{const{assembly:r}=n,a=e.rootModel?.session?.apolloDataStore;if(!a)break;const s=a.getBackendDriver(r),u=await s.getRefNameAliases(r);t.workers[0].postMessage({apollo:o,messageId:i,refNameAliases:u});break}}})),t):t))}configure(e){n.isAbstractMenuManager(e.rootModel)&&(e.rootModel.appendToMenu("Apollo",{label:"Download GFF3",onClick:e=>{e.queueDialog((t=>[LR,{session:e,handleClose:()=>{t()}}]))}}),e.rootModel.appendToMenu("Apollo",{label:"Manage Checks",onClick:e=>{e.queueDialog((t=>[BR,{session:e,handleClose:()=>{t()}}]))}}),e.rootModel.appendToMenu("Apollo",{label:"View Change Log",onClick:e=>{e.queueDialog((t=>[sN,{session:e,handleClose:()=>{t()}}]))}}),e.rootModel.appendToMenu("Apollo",{label:"Open local GFF3 file",onClick:e=>{e.queueDialog((t=>[iN,{session:e,handleClose:()=>{t()},inMemoryFileDriver:e.apolloDataStore.inMemoryFileDriver}]))}}),e.rootModel.appendToMenu("Apollo",{label:"View check results",onClick:e=>{e.queueDialog((t=>[fN,{session:e,handleClose:()=>{t()}}]))}}),e.rootModel.appendToMenu("Apollo",{label:"Log out",onClick:e=>{e.queueDialog((t=>[qR,{session:e,handleClose:()=>{t()}}]))}}))}},Object.defineProperty(e,"__esModule",{value:!0})}));
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