@apollo-annotation/jbrowse-plugin-apollo 0.1.6 → 0.1.8

package/dist/jbrowse-plugin-apollo.umd.development.js

@@ -4624,7 +4624,7 @@
 	});
 	Validation$5.Validation = Validation$5.isContext = void 0;
 	function isContext$2(thing) {
-	  return thing.context !== undefined && thing.reflector !== undefined;
+	  return 'context' in thing && 'reflector' in thing;
 	}
 	Validation$5.isContext = isContext$2;
 	var Validation$4 = /*#__PURE__*/function () {
@@ -5859,7 +5859,7 @@
 	});
 	Validation$3.Validation = Validation$3.isContext = void 0;
 	function isContext$1(thing) {
-	  return thing.context !== undefined && thing.reflector !== undefined;
+	  return 'context' in thing && 'reflector' in thing;
 	}
 	Validation$3.isContext = isContext$1;
 	var Validation$2 = /*#__PURE__*/function () {
@@ -5992,6 +5992,8 @@
 	  tslib_1.__exportStar(Validation$3, exports);
 	})(dist$1);
 
+	/* eslint-disable @typescript-eslint/restrict-template-expressions */
+	/* eslint-disable @typescript-eslint/require-await */
 	Object.defineProperty(AddAssemblyAndFeaturesFromFileChange$1, "__esModule", {
 	  value: true
 	});
@@ -15674,10 +15676,13 @@
 
 	var require$$2 = /*@__PURE__*/getAugmentedNamespace(esm$1);
 
+	/* eslint-disable @typescript-eslint/restrict-template-expressions */
+	/* eslint-disable @typescript-eslint/no-unnecessary-condition */
 	Object.defineProperty(AddAssemblyFromExternalChange$1, "__esModule", {
 	  value: true
 	});
 	AddAssemblyFromExternalChange$1.AddAssemblyFromExternalChange = void 0;
+	/* eslint-disable @typescript-eslint/require-await */
 	var apollo_common_1$h = dist$1;
 	var indexedfasta_1 = require$$1$1;
 	var generic_filehandle_1 = require$$2;
@@ -15915,6 +15920,8 @@
 	  value: true
 	});
 	AddAssemblyFromFileChange$1.AddAssemblyFromFileChange = void 0;
+	/* eslint-disable @typescript-eslint/restrict-template-expressions */
+	/* eslint-disable @typescript-eslint/require-await */
 	var apollo_common_1$g = dist$1;
 	var AddAssemblyFromFileChange = /*#__PURE__*/function (_apollo_common_1$Asse) {
 	  _inherits(AddAssemblyFromFileChange, _apollo_common_1$Asse);
@@ -16119,6 +16126,9 @@
 	  value: true
 	});
 	DeleteFeatureChange$1.isDeleteFeatureChange = DeleteFeatureChange$1.DeleteFeatureChange = void 0;
+	/* eslint-disable @typescript-eslint/restrict-template-expressions */
+	/* eslint-disable @typescript-eslint/require-await */
+	/* eslint-disable @typescript-eslint/no-unnecessary-condition */
 	var apollo_common_1$f = dist$1;
 	var AddFeatureChange_1 = AddFeatureChange$1;
 	var DeleteFeatureChange = /*#__PURE__*/function (_apollo_common_1$Feat) {
@@ -16444,6 +16454,10 @@
 	  value: true
 	});
 	AddFeatureChange$1.isAddFeatureChange = AddFeatureChange$1.AddFeatureChange = void 0;
+	/* eslint-disable @typescript-eslint/restrict-template-expressions */
+	/* eslint-disable @typescript-eslint/no-unsafe-assignment */
+	/* eslint-disable @typescript-eslint/require-await */
+	/* eslint-disable @typescript-eslint/no-unnecessary-condition */
 	var apollo_common_1$e = dist$1;
 	var DeleteFeatureChange_1 = DeleteFeatureChange$1;
 	var AddFeatureChange = /*#__PURE__*/function (_apollo_common_1$Feat) {
@@ -16790,6 +16804,7 @@
 	  value: true
 	});
 	AddFeaturesFromFileChange$1.AddFeaturesFromFileChange = void 0;
+	/* eslint-disable @typescript-eslint/require-await */
 	var apollo_common_1$d = dist$1;
 	var AddFeaturesFromFileChange = /*#__PURE__*/function (_apollo_common_1$Asse) {
 	  _inherits(AddFeaturesFromFileChange, _apollo_common_1$Asse);
@@ -17029,6 +17044,10 @@
 	  value: true
 	});
 	DeleteAssemblyChange$1.DeleteAssemblyChange = void 0;
+	/* eslint-disable @typescript-eslint/no-unsafe-return */
+	/* eslint-disable @typescript-eslint/require-await */
+	/* eslint-disable @typescript-eslint/no-unnecessary-condition */
+	/* eslint-disable @typescript-eslint/no-unsafe-call */
 	var apollo_common_1$c = dist$1;
 	var util_1 = require$$1__default$1["default"];
 	var DeleteAssemblyChange = /*#__PURE__*/function (_apollo_common_1$Asse) {
@@ -17204,6 +17223,7 @@
 	  value: true
 	});
 	DeleteUserChange$1.DeleteUserChange = void 0;
+	/* eslint-disable @typescript-eslint/require-await */
 	var apollo_common_1$b = dist$1;
 	var DeleteUserChange = /*#__PURE__*/function (_apollo_common_1$Chan) {
 	  _inherits(DeleteUserChange, _apollo_common_1$Chan);
@@ -17333,6 +17353,9 @@
 	  value: true
 	});
 	DiscontinuousLocationEndChange$1.isDiscontinuousLocationEndChange = DiscontinuousLocationEndChange$1.DiscontinuousLocationEndChange = void 0;
+	/* eslint-disable @typescript-eslint/no-unnecessary-condition */
+	/* eslint-disable @typescript-eslint/restrict-template-expressions */
+	/* eslint-disable @typescript-eslint/require-await */
 	var apollo_common_1$a = dist$1;
 	var DiscontinuousLocationEndChange = /*#__PURE__*/function (_apollo_common_1$Feat) {
 	  _inherits(DiscontinuousLocationEndChange, _apollo_common_1$Feat);
@@ -17618,6 +17641,9 @@
 	  value: true
 	});
 	DiscontinuousLocationStartChange$1.isDiscontinuousLocationStartChange = DiscontinuousLocationStartChange$1.DiscontinuousLocationStartChange = void 0;
+	/* eslint-disable @typescript-eslint/no-unnecessary-condition */
+	/* eslint-disable @typescript-eslint/restrict-template-expressions */
+	/* eslint-disable @typescript-eslint/require-await */
 	var apollo_common_1$9 = dist$1;
 	var DiscontinuousLocationStartChange = /*#__PURE__*/function (_apollo_common_1$Feat) {
 	  _inherits(DiscontinuousLocationStartChange, _apollo_common_1$Feat);
@@ -17903,6 +17929,9 @@
 	  value: true
 	});
 	FeatureAttributeChange$1.isFeatureAttributeChange = FeatureAttributeChange$1.FeatureAttributeChange = void 0;
+	/* eslint-disable @typescript-eslint/restrict-template-expressions */
+	/* eslint-disable @typescript-eslint/require-await */
+	/* eslint-disable @typescript-eslint/no-unnecessary-condition */
 	var apollo_common_1$8 = dist$1;
 	var FeatureAttributeChange = /*#__PURE__*/function (_apollo_common_1$Feat) {
 	  _inherits(FeatureAttributeChange, _apollo_common_1$Feat);
@@ -18182,6 +18211,9 @@
 	  value: true
 	});
 	LocationEndChange$1.isLocationEndChange = LocationEndChange$1.LocationEndChange = void 0;
+	/* eslint-disable @typescript-eslint/restrict-template-expressions */
+	/* eslint-disable @typescript-eslint/require-await */
+	/* eslint-disable @typescript-eslint/no-unnecessary-condition */
 	var apollo_common_1$7 = dist$1;
 	var LocationEndChange = /*#__PURE__*/function (_apollo_common_1$Feat) {
 	  _inherits(LocationEndChange, _apollo_common_1$Feat);
@@ -18481,6 +18513,9 @@
 	  value: true
 	});
 	LocationStartChange$1.isLocationStartChange = LocationStartChange$1.LocationStartChange = void 0;
+	/* eslint-disable @typescript-eslint/restrict-template-expressions */
+	/* eslint-disable @typescript-eslint/require-await */
+	/* eslint-disable @typescript-eslint/no-unnecessary-condition */
 	var apollo_common_1$6 = dist$1;
 	var LocationStartChange = /*#__PURE__*/function (_apollo_common_1$Feat) {
 	  _inherits(LocationStartChange, _apollo_common_1$Feat);
@@ -18780,6 +18815,9 @@
 	  value: true
 	});
 	StrandChange$1.StrandChange = void 0;
+	/* eslint-disable @typescript-eslint/restrict-template-expressions */
+	/* eslint-disable @typescript-eslint/require-await */
+	/* eslint-disable @typescript-eslint/no-unnecessary-condition */
 	var apollo_common_1$5 = dist$1;
 	var StrandChange = /*#__PURE__*/function (_apollo_common_1$Feat) {
 	  _inherits(StrandChange, _apollo_common_1$Feat);
@@ -19067,6 +19105,9 @@
 	  value: true
 	});
 	TypeChange$1.TypeChange = void 0;
+	/* eslint-disable @typescript-eslint/restrict-template-expressions */
+	/* eslint-disable @typescript-eslint/require-await */
+	/* eslint-disable @typescript-eslint/no-unnecessary-condition */
 	var apollo_common_1$4 = dist$1;
 	var TypeChange = /*#__PURE__*/function (_apollo_common_1$Feat) {
 	  _inherits(TypeChange, _apollo_common_1$Feat);
@@ -19354,6 +19395,7 @@
 	  value: true
 	});
 	UserChange$1.UserChange = void 0;
+	/* eslint-disable @typescript-eslint/require-await */
 	var apollo_common_1$3 = dist$1;
 	var UserChange = /*#__PURE__*/function (_apollo_common_1$Chan) {
 	  _inherits(UserChange, _apollo_common_1$Chan);
@@ -19572,6 +19614,7 @@
 	  value: true
 	});
 	GetAssembliesOperation$1.GetAssembliesOperation = void 0;
+	/* eslint-disable @typescript-eslint/require-await */
 	var apollo_common_1$2 = dist$1;
 	var GetAssembliesOperation = /*#__PURE__*/function (_apollo_common_1$Oper) {
 	  _inherits(GetAssembliesOperation, _apollo_common_1$Oper);
@@ -19631,6 +19674,7 @@
 	  value: true
 	});
 	GetFeaturesOperation$1.GetFeaturesOperation = void 0;
+	/* eslint-disable @typescript-eslint/require-await */
 	var apollo_common_1$1 = dist$1;
 	var GetFeaturesOperation = /*#__PURE__*/function (_apollo_common_1$Oper) {
 	  _inherits(GetFeaturesOperation, _apollo_common_1$Oper);
@@ -21110,6 +21154,7 @@
 
 	var util$1 = {};
 
+	/* eslint-disable @typescript-eslint/no-unsafe-assignment */
 	Object.defineProperty(util$1, "__esModule", {
 	  value: true
 	});
@@ -21273,7 +21318,7 @@
 	}), 'Add');
 	default_1$9 = Add["default"] = _default$b;
 
-	var version = "0.1.6";
+	var version = "0.1.8";
 
 	const ApolloConfigSchema = configuration.ConfigurationSchema('ApolloInternetAccount', {
 	    baseURL: {
@@ -28808,7 +28853,7 @@
 	    for (const ref of assembly.refSeqs.values()) {
 	        for (const feature of ref.features.values()) {
 	            for (const check of dist$3.checkRegistry.getChecks().values()) {
-	                const result = await check.checkFeature(require$$0$2.getSnapshot(feature), async (start, stop) => ref.getSequence(start, stop));
+	                const result = await check.checkFeature(require$$0$2.getSnapshot(feature), (start, stop) => Promise.resolve(ref.getSequence(start, stop)));
 	                checkResults.push(...result);
 	            }
 	        }
@@ -28900,14 +28945,14 @@
 	            }
 	        }
 	    }
-	    if (childFeatures?.length) {
+	    if (childFeatures.length > 0) {
 	        const children = {};
 	        for (const childFeature of childFeatures) {
 	            const child = createFeature(childFeature);
 	            children[child._id] = child;
 	            // Add value to gffId
 	            child.attributes?._id
-	                ? (child.gffId = child.attributes?._id.toString())
+	                ? (child.gffId = child.attributes._id.toString())
 	                : (child.gffId = child._id);
 	        }
 	        feature.children = children;
@@ -29037,6 +29082,7 @@
 	}), 'Close');
 	default_1$7 = Close["default"] = _default$9;
 
+	/* eslint-disable @typescript-eslint/unbound-method */
 	const useStyles$f = mui.makeStyles()((theme) => ({
 	    dialogTitle: {
 	        background: theme.palette.primary.main,
@@ -29059,6 +29105,7 @@
 	                React__default["default"].createElement(default_1$7, null))) }));
 	});
 
+	/* eslint-disable @typescript-eslint/no-unsafe-enum-comparison */
 	var FileType;
 	(function (FileType) {
 	    FileType["GFF3"] = "text/x-gff3";
@@ -29266,21 +29313,29 @@
 	                        React__default["default"].createElement(material.FormControlLabel, { value: FileType.EXTERNAL, control: React__default["default"].createElement(material.Radio, null), label: "External", disabled: submitted && !errorMessage }))),
 	                fileType === FileType.EXTERNAL ? (React__default["default"].createElement(material.Box, { style: { marginTop: 20 } },
 	                    React__default["default"].createElement(material.Typography, { variant: "caption" }, "Enter FASTA and FASTA index(es) URL"),
-	                    React__default["default"].createElement(material.TextField, { margin: "dense", helperText: "Can be bgz-compressed", id: "fasta", label: "FASTA", type: "TextField", fullWidth: true, variant: "outlined", error: !validFastaFile, onChange: (e) => setFastaFile(e.target.value), disabled: submitted && !errorMessage, InputProps: {
+	                    React__default["default"].createElement(material.TextField, { margin: "dense", helperText: "Can be bgz-compressed", id: "fasta", label: "FASTA", type: "TextField", fullWidth: true, variant: "outlined", error: !validFastaFile, onChange: (e) => {
+	                            setFastaFile(e.target.value);
+	                        }, disabled: submitted && !errorMessage, InputProps: {
 	                            startAdornment: (React__default["default"].createElement(InputAdornment__default["default"], { position: "start" },
 	                                React__default["default"].createElement(default_1$8, null))),
 	                        } }),
-	                    React__default["default"].createElement(material.TextField, { margin: "dense", id: "fasta-index", label: "FASTA Index", helperText: ".fai or .gz.fai", type: "TextField", fullWidth: true, variant: "outlined", error: !validFastaIndexFile, onChange: (e) => setFastaIndexFile(e.target.value), disabled: submitted && !errorMessage, InputProps: {
+	                    React__default["default"].createElement(material.TextField, { margin: "dense", id: "fasta-index", label: "FASTA Index", helperText: ".fai or .gz.fai", type: "TextField", fullWidth: true, variant: "outlined", error: !validFastaIndexFile, onChange: (e) => {
+	                            setFastaIndexFile(e.target.value);
+	                        }, disabled: submitted && !errorMessage, InputProps: {
 	                            startAdornment: (React__default["default"].createElement(InputAdornment__default["default"], { position: "start" },
 	                                React__default["default"].createElement(default_1$8, null))),
 	                        } }),
-	                    React__default["default"].createElement(material.TextField, { margin: "dense", id: "fasta-gzi-index", label: "FASTA GZI Index", helperText: "Only for bgz-compressed FASTA, .gz.gzi", type: "TextField", fullWidth: true, variant: "outlined", error: Boolean(fastaGziIndexFile) && !validFastaGziIndexFile, onChange: (e) => setFastaGziIndexFile(e.target.value), disabled: submitted && !errorMessage, InputProps: {
+	                    React__default["default"].createElement(material.TextField, { margin: "dense", id: "fasta-gzi-index", label: "FASTA GZI Index", helperText: "Only for bgz-compressed FASTA, .gz.gzi", type: "TextField", fullWidth: true, variant: "outlined", error: Boolean(fastaGziIndexFile) && !validFastaGziIndexFile, onChange: (e) => {
+	                            setFastaGziIndexFile(e.target.value);
+	                        }, disabled: submitted && !errorMessage, InputProps: {
 	                            startAdornment: (React__default["default"].createElement(InputAdornment__default["default"], { position: "start" },
 	                                React__default["default"].createElement(default_1$8, null))),
 	                        } }))) : (React__default["default"].createElement(material.Box, { style: { marginTop: 20 } },
 	                    React__default["default"].createElement("input", { type: "file", onChange: handleChangeFile, disabled: submitted && !errorMessage }),
 	                    React__default["default"].createElement(material.FormGroup, null,
-	                        React__default["default"].createElement(material.FormControlLabel, { control: React__default["default"].createElement(material.Checkbox, { checked: fileType === FileType.GFF3 && importFeatures, onChange: () => setImportFeatures(!importFeatures), disabled: fileType !== FileType.GFF3 ||
+	                        React__default["default"].createElement(material.FormControlLabel, { control: React__default["default"].createElement(material.Checkbox, { checked: fileType === FileType.GFF3 && importFeatures, onChange: () => {
+	                                    setImportFeatures(!importFeatures);
+	                                }, disabled: fileType !== FileType.GFF3 ||
 	                                    (submitted && !errorMessage) }), label: "Also load features from GFF3 file" }))))),
 	            React__default["default"].createElement(material.DialogActions, null,
 	                React__default["default"].createElement(material.Button, { disabled: !validAsm ||
@@ -35912,7 +35967,7 @@
 	    return uri;
 	}
 
-	/* eslint-disable import/no-named-as-default-member */
+	/* eslint-disable @typescript-eslint/no-unsafe-return */
 	/** special value of jsonPath that gets the IRI (that is, ID) of the node with the configured prefixes applied */
 	const PREFIXED_ID_PATH = '$PREFIXED_ID';
 	/** small wrapper for jsonpath.query that intercepts requests for the special prefixed ID path */
@@ -36544,6 +36599,7 @@
 	  });
 	});
 
+	/* eslint-disable @typescript-eslint/no-unnecessary-condition */
 	/** schema version we are currently on, used for the IndexedDB schema open call */
 	const schemaVersion = 2;
 	/** open the IndexedDB and create the DB schema if necessary */
@@ -36673,10 +36729,11 @@
 	        return false;
 	    }
 	    // check that the index paths and prefixes are the same as our current ones
-	    return (es6(this.options.prefixes, meta.storeOptions?.prefixes) &&
-	        es6(this.options.textIndexing, meta.storeOptions?.textIndexing));
+	    return (es6(this.options.prefixes, meta.storeOptions.prefixes) &&
+	        es6(this.options.textIndexing, meta.storeOptions.textIndexing));
 	}
 
+	/* eslint-disable @typescript-eslint/no-throw-literal */
 	/**
 	 * @deprecated use the one from jbrowse core when it is published
 	 **/
@@ -36771,7 +36828,7 @@
 	        const myTx = tx ?? db.transaction('nodes');
 	        return myTx.objectStore('nodes').count();
 	    }
-	    async unique(nodes) {
+	    unique(nodes) {
 	        const seen = new Map();
 	        const result = [];
 	        for (const node of nodes) {
@@ -36836,10 +36893,7 @@
 	        const resultIds = new Set();
 	        async function recur(queryIds) {
 	            await Promise.all([...queryIds].map(async (queryId) => {
-	                const theseResults = (await myTx
-	                    .objectStore('edges')
-	                    .index(queryIndex)
-	                    .getAll(queryId))
+	                const theseResults = (await myTx.objectStore('edges').index(queryIndex).getAll(queryId))
 	                    .filter((element) => filterEdge(element))
 	                    .map((edge) => edge[resultProp]);
 	                if (theseResults.length > 0) {
@@ -37106,13 +37160,13 @@
 	    return subpartTerms;
 	}
 
+	/* eslint-disable @typescript-eslint/no-unused-vars */
 	function OntologyTermAutocomplete({ fetchValidTerms, filterTerms: filterTermsProp, includeDeprecated, onChange, ontologyName, ontologyVersion, renderInput, session, style, value: valueString, }) {
 	    const [open, setOpen] = React.useState(false);
 	    const [termChoices, setTermChoices] = React.useState();
 	    const [currentOntologyTermInvalid, setCurrentOntologyTermInvalid] = React.useState('');
 	    const [currentOntologyTerm, setCurrentOntologyTerm] = React.useState();
-	    const ontologyManager = session.apolloDataStore
-	        .ontologyManager;
+	    const { ontologyManager } = session.apolloDataStore;
 	    const ontologyStore = ontologyManager.findOntology(ontologyName, ontologyVersion)?.dataStore;
 	    const needToLoadTermChoices = ontologyStore && open && !termChoices;
 	    const needToLoadCurrentTerm = ontologyStore && !currentOntologyTerm;
@@ -37172,7 +37226,7 @@
 	        session,
 	        fetchValidTerms,
 	    ]);
-	    const handleChange = async (event, newValue) => {
+	    const handleChange = (event, newValue) => {
 	        if (!newValue) {
 	            return;
 	        }
@@ -37278,7 +37332,7 @@
 	            },
 	            parentFeatureId: sourceFeature._id,
 	        });
-	        await changeManager.submit?.(change);
+	        await changeManager.submit(change);
 	        notify('Feature added successfully', 'success');
 	        handleClose();
 	        event.preventDefault();
@@ -37294,7 +37348,7 @@
 	            setShowPhase(false);
 	        }
 	    }
-	    async function handleChangePhase(e) {
+	    function handleChangePhase(e) {
 	        setErrorMessage('');
 	        setPhase(e.target.value);
 	        switch (Number(e.target.value)) {
@@ -37320,8 +37374,12 @@
 	    return (React__default["default"].createElement(Dialog, { open: true, title: "Add new child feature", handleClose: handleClose, maxWidth: false, "data-testid": "add-feature-dialog" },
 	        React__default["default"].createElement("form", { onSubmit: onSubmit },
 	            React__default["default"].createElement(material.DialogContent, { style: { display: 'flex', flexDirection: 'column' } },
-	                React__default["default"].createElement(material.TextField, { margin: "dense", id: "start", label: "Start", type: "number", fullWidth: true, variant: "outlined", value: start, onChange: (e) => setStart(e.target.value) }),
-	                React__default["default"].createElement(material.TextField, { margin: "dense", id: "end", label: "End", type: "number", fullWidth: true, variant: "outlined", value: end, onChange: (e) => setEnd(e.target.value), error: error, helperText: error ? '"End" must be greater than "Start"' : null }),
+	                React__default["default"].createElement(material.TextField, { margin: "dense", id: "start", label: "Start", type: "number", fullWidth: true, variant: "outlined", value: start, onChange: (e) => {
+	                        setStart(e.target.value);
+	                    } }),
+	                React__default["default"].createElement(material.TextField, { margin: "dense", id: "end", label: "End", type: "number", fullWidth: true, variant: "outlined", value: end, onChange: (e) => {
+	                        setEnd(e.target.value);
+	                    }, error: error, helperText: error ? '"End" must be greater than "Start"' : null }),
 	                React__default["default"].createElement(OntologyTermAutocomplete, { session: session, ontologyName: "Sequence Ontology", style: { width: 170 }, value: type, filterTerms: isOntologyClass, fetchValidTerms: fetchValidTerms.bind(null, sourceFeature), renderInput: (params) => (React__default["default"].createElement(material.TextField, { ...params, label: "Type", variant: "outlined", fullWidth: true, error: Boolean(typeWarningText), helperText: typeWarningText })), onChange: (oldValue, newValue) => {
 	                        if (newValue) {
 	                            handleChangeType(newValue);
@@ -37375,7 +37433,7 @@
 	    const [selectedRefSeqId, setSelectedRefSeqId] = React.useState('');
 	    const [start, setStart] = React.useState(sourceFeature.start);
 	    const [errorMessage, setErrorMessage] = React.useState('');
-	    async function handleChangeAssembly(e) {
+	    function handleChangeAssembly(e) {
 	        setSelectedAssemblyId(e.target.value);
 	    }
 	    React.useEffect(() => {
@@ -37399,9 +37457,11 @@
 	            setRefNames(newRefNames);
 	            setSelectedRefSeqId(newRefNames[0]?._id || '');
 	        }
-	        getRefNames().catch((error) => setErrorMessage(String(error)));
+	        getRefNames().catch((error) => {
+	            setErrorMessage(String(error));
+	        });
 	    }, [selectedAssemblyId, assemblyManager]);
-	    async function handleChangeRefSeq(e) {
+	    function handleChangeRefSeq(e) {
 	        const refSeq = e.target.value;
 	        setSelectedRefSeqId(refSeq);
 	    }
@@ -37417,7 +37477,7 @@
 	            setErrorMessage(`Assembly not found: ${selectedAssemblyId}.`);
 	            return;
 	        }
-	        const canonicalRefName = assembly?.getCanonicalRefName(selectedRefSeqId);
+	        const canonicalRefName = assembly.getCanonicalRefName(selectedRefSeqId);
 	        const region = assembly.regions?.find((r) => r.refName === canonicalRefName);
 	        if (!region) {
 	            setErrorMessage(`RefSeq not found: ${selectedRefSeqId}.`);
@@ -37473,7 +37533,7 @@
 	            copyFeature: true,
 	            allIds: featureIds,
 	        });
-	        await changeManager.submit?.(change);
+	        await changeManager.submit(change);
 	        notify('Feature copied successfully', 'success');
 	        handleClose();
 	        event.preventDefault();
@@ -37533,6 +37593,7 @@
 	            React__default["default"].createElement(material.DialogContentText, { color: "error" }, errorMessage))) : null));
 	}
 
+	/* eslint-disable @typescript-eslint/no-misused-promises */
 	function DeleteAssembly({ changeManager, handleClose, session, }) {
 	    const { internetAccounts } = require$$0$2.getRoot(session);
 	    const [selectedAssembly, setSelectedAssembly] = React.useState();
@@ -37575,7 +37636,7 @@
 	            typeName: 'DeleteAssemblyChange',
 	            assembly: selectedAssembly.name,
 	        });
-	        await changeManager.submit?.(change, {
+	        await changeManager.submit(change, {
 	            internetAccountId: selectedInternetAccount.internetAccountId,
 	        });
 	        handleClose();
@@ -37592,7 +37653,9 @@
 	                React__default["default"].createElement(material.DialogContentText, null,
 	                    React__default["default"].createElement("strong", { style: { color: 'red' } }, "NOTE: All assembly data will be deleted and this operation cannot be undone!")),
 	                React__default["default"].createElement(material.FormGroup, null,
-	                    React__default["default"].createElement(material.FormControlLabel, { control: React__default["default"].createElement(material.Checkbox, { checked: confirmDelete, onChange: () => setconfirmDelete(!confirmDelete) }), label: "I understand that all assembly data will be deleted" }))),
+	                    React__default["default"].createElement(material.FormControlLabel, { control: React__default["default"].createElement(material.Checkbox, { checked: confirmDelete, onChange: () => {
+	                                setconfirmDelete(!confirmDelete);
+	                            } }), label: "I understand that all assembly data will be deleted" }))),
 	            React__default["default"].createElement(material.DialogActions, null,
 	                React__default["default"].createElement(material.Button, { disabled: !selectedAssembly || !confirmDelete, variant: "contained", type: "submit" }, "Delete"),
 	                React__default["default"].createElement(material.Button, { variant: "outlined", type: "submit", onClick: handleClose }, "Cancel"))),
@@ -37617,7 +37680,7 @@
 	            deletedFeature: require$$0$2.getSnapshot(sourceFeature),
 	            parentFeatureId: sourceFeature.parent?._id,
 	        });
-	        await changeManager.submit?.(change);
+	        await changeManager.submit(change);
 	        notify('Feature deleted successfully', 'success');
 	        handleClose();
 	        event.preventDefault();
@@ -37799,7 +37862,7 @@
 	            });
 	        }
 	        for (const [, refSeq] of refSeqs) {
-	            const features = refSeq?.features;
+	            const { features } = refSeq;
 	            if (!features) {
 	                continue;
 	            }
@@ -37828,6 +37891,7 @@
 	            React__default["default"].createElement(material.DialogContentText, { color: "error" }, errorMessage))) : null));
 	}
 
+	/* eslint-disable @typescript-eslint/unbound-method */
 	function ImportFeatures({ changeManager, handleClose, session, }) {
 	    const { apolloDataStore } = session;
 	    const [file, setFile] = React.useState();
@@ -37869,7 +37933,7 @@
 	                assemblyId: selectedAssembly.name,
 	            });
 	            uri.search = searchParams.toString();
-	            const fetch = apolloInternetAccount?.getFetcher({
+	            const fetch = apolloInternetAccount.getFetcher({
 	                locationType: 'UriLocation',
 	                uri: uri.toString(),
 	            });
@@ -37923,7 +37987,7 @@
 	        formData.append('file', file);
 	        formData.append('fileName', file.name);
 	        formData.append('type', 'text/x-gff3');
-	        const apolloFetchFile = apolloInternetAccount?.getFetcher({
+	        const apolloFetchFile = apolloInternetAccount.getFetcher({
 	            locationType: 'UriLocation',
 	            uri: url,
 	        });
@@ -38018,7 +38082,9 @@
 	            const data = (await response.json());
 	            setChecks(data);
 	        }
-	        getChecks().catch((error) => setErrorMessage(String(error)));
+	        getChecks().catch((error) => {
+	            setErrorMessage(String(error));
+	        });
 	    }, [selectedInternetAccount]);
 	    React.useEffect(() => {
 	        if (assemblies.length > 0 && selectedAssembly === undefined) {
@@ -38042,7 +38108,9 @@
 	            const assembly = (await response.json());
 	            setSelectedChecks(assembly.checks);
 	        }
-	        getChecks().catch((error) => setErrorMessage(String(error)));
+	        getChecks().catch((error) => {
+	            setErrorMessage(String(error));
+	        });
 	    }, [selectedAssembly, selectedInternetAccount]);
 	    function handleChangeAssembly(e) {
 	        const newAssembly = assemblies.find((asm) => asm.name === e.target.value);
@@ -38146,6 +38214,7 @@
 	}), 'Delete');
 	default_1$6 = Delete["default"] = _default$8;
 
+	/* eslint-disable @typescript-eslint/no-unnecessary-condition */
 	function ManageUsers({ changeManager, handleClose, session, }) {
 	    const { internetAccounts } = require$$0$2.getRoot(session);
 	    const apolloInternetAccounts = internetAccounts.filter((ia) => ia.type === 'ApolloInternetAccount' && ia.role?.includes('admin'));
@@ -38158,7 +38227,7 @@
 	    const getUsers = React.useCallback(async () => {
 	        const { baseURL } = selectedInternetAccount;
 	        const uri = new URL('/users', baseURL).href;
-	        const apolloFetch = selectedInternetAccount?.getFetcher({
+	        const apolloFetch = selectedInternetAccount.getFetcher({
 	            locationType: 'UriLocation',
 	            uri,
 	        });
@@ -38174,7 +38243,9 @@
 	        }
 	    }, [selectedInternetAccount]);
 	    React.useEffect(() => {
-	        getUsers().catch((error) => setErrorMessage(String(error)));
+	        getUsers().catch((error) => {
+	            setErrorMessage(String(error));
+	        });
 	    }, [getUsers]);
 	    async function deleteUser(id) {
 	        const change = new dist$2.DeleteUserChange({
@@ -38239,7 +38310,9 @@
 	                React__default["default"].createElement(material.DialogContentText, null, "Select account"),
 	                React__default["default"].createElement(material.Select, { value: selectedInternetAccount.internetAccountId, onChange: handleChangeInternetAccount, disabled: !errorMessage }, internetAccounts.map((option) => (React__default["default"].createElement(material.MenuItem, { key: option.id, value: option.internetAccountId }, option.name)))))) : null,
 	            React__default["default"].createElement("div", { style: { height: '100%', width: '100%' } },
-	                React__default["default"].createElement(xDataGrid.DataGrid, { pagination: true, rows: users, columns: gridColumns, getRowId: (row) => row._id, slots: { toolbar: xDataGrid.GridToolbar }, getRowHeight: () => 'auto', isCellEditable: (params) => !isCurrentUser(params.id), processRowUpdate: processRowUpdate, onProcessRowUpdateError: (error) => setErrorMessage(String(error)) }))),
+	                React__default["default"].createElement(xDataGrid.DataGrid, { pagination: true, rows: users, columns: gridColumns, getRowId: (row) => row._id, slots: { toolbar: xDataGrid.GridToolbar }, getRowHeight: () => 'auto', isCellEditable: (params) => !isCurrentUser(params.id), processRowUpdate: processRowUpdate, onProcessRowUpdateError: (error) => {
+	                        setErrorMessage(String(error));
+	                    } }))),
 	        React__default["default"].createElement(material.DialogActions, null,
 	            React__default["default"].createElement(material.Button, { variant: "outlined", type: "submit", onClick: handleClose }, "Close")),
 	        errorMessage ? (React__default["default"].createElement(material.DialogContent, null,
@@ -38765,6 +38838,7 @@
 	})(parse);
 	var highlightParse = parse.exports;
 
+	/* eslint-disable @typescript-eslint/no-unnecessary-condition */
 	// interface TermAutocompleteResult extends TermValue {
 	//   label: string[]
 	//   match: string
@@ -38813,8 +38887,7 @@
 	            React__namespace.createElement(material.Chip, { label: errorMessage || manager.applyPrefixes(termId), color: errorMessage ? 'error' : 'default', size: "small", ...getTagProps({ index }) }))));
 	}
 	function OntologyTermMultiSelect({ includeDeprecated, onChange, ontologyName, ontologyVersion, session, value: initialValue, }) {
-	    const ontologyManager = session.apolloDataStore
-	        .ontologyManager;
+	    const { ontologyManager } = session.apolloDataStore;
 	    const ontology = ontologyManager.findOntology(ontologyName, ontologyVersion);
 	    const [value, setValue] = React__namespace.useState(initialValue.map((id) => ({ term: { id, type: 'CLASS' } })));
 	    const [inputValue, setInputValue] = React__namespace.useState('');
@@ -39073,7 +39146,7 @@
 	            featureId: sourceFeature._id,
 	            attributes: attrs,
 	        });
-	        await changeManager.submit?.(change);
+	        await changeManager.submit(change);
 	        notify('Feature attributes modified successfully', 'success');
 	        handleClose();
 	        event.preventDefault();
@@ -39177,6 +39250,7 @@
 	                React__default["default"].createElement(material.Button, { variant: "outlined", type: "submit", disabled: showAddNewForm, onClick: handleClose }, "Cancel")))));
 	}
 
+	/* eslint-disable @typescript-eslint/unbound-method */
 	function OpenLocalFile({ handleClose, session }) {
 	    const { addApolloTrackConfig, apolloDataStore } = session;
 	    const { addAssembly, addSessionAssembly, assemblyManager, notify } = session;
@@ -39185,7 +39259,7 @@
 	    const [errorMessage, setErrorMessage] = React.useState('');
 	    const [submitted, setSubmitted] = React.useState(false);
 	    const theme = material.useTheme();
-	    async function handleChangeFile(e) {
+	    function handleChangeFile(e) {
 	        const selectedFile = e.target.files?.item(0);
 	        if (!selectedFile) {
 	            return;
@@ -39242,10 +39316,10 @@
 	        if (a) {
 	            // @ts-expect-error MST type coercion problem?
 	            addApolloTrackConfig(a);
-	            notify(`Loaded GFF3 ${file?.name}`, 'success');
+	            notify(`Loaded GFF3 ${file.name}`, 'success');
 	        }
 	        else {
-	            notify(`Error loading GFF3 ${file?.name}`, 'error');
+	            notify(`Error loading GFF3 ${file.name}`, 'error');
 	        }
 	        handleClose();
 	    }
@@ -39270,6 +39344,7 @@
 	            React__default["default"].createElement(material.DialogContentText, { color: "error" }, errorMessage))) : null));
 	}
 
+	/* eslint-disable @typescript-eslint/no-unnecessary-condition */
 	const useStyles$d = mui.makeStyles()((theme) => ({
 	    changeTextarea: {
 	        fontFamily: 'monospace',
@@ -39335,7 +39410,9 @@
 	                setAssemblyCollection(data);
 	            }
 	        }
-	        getAssemblies().catch((error) => setErrorMessage(String(error)));
+	        getAssemblies().catch((error) => {
+	            setErrorMessage(String(error));
+	        });
 	    }, [apolloInternetAccount, baseURL]);
 	    React.useEffect(() => {
 	        if (!assemblyId && assemblyCollection.length > 0) {
@@ -39369,9 +39446,11 @@
 	                setDisplayGridData(data);
 	            }
 	        }
-	        getGridData().catch((error) => setErrorMessage(String(error)));
+	        getGridData().catch((error) => {
+	            setErrorMessage(String(error));
+	        });
 	    }, [assemblyId, apolloInternetAccount, baseURL]);
-	    async function handleChangeAssembly(e) {
+	    function handleChangeAssembly(e) {
 	        setAssemblyId(e.target.value);
 	    }
 	    return (React__default["default"].createElement(Dialog, { open: true, fullScreen: true, title: "View change log", handleClose: handleClose, "data-testid": "view-changelog" },
@@ -39428,8 +39507,7 @@
 	                    handleClose: () => {
 	                        doneCallback();
 	                    },
-	                    changeManager: session.apolloDataStore
-	                        .changeManager,
+	                    changeManager: session.apolloDataStore.changeManager,
 	                },
 	            ]);
 	        },
@@ -39444,8 +39522,7 @@
 	                    handleClose: () => {
 	                        doneCallback();
 	                    },
-	                    changeManager: session.apolloDataStore
-	                        .changeManager,
+	                    changeManager: session.apolloDataStore.changeManager,
 	                },
 	            ]);
 	        },
@@ -39548,7 +39625,9 @@
 	            const data = (await response.json());
 	            setLoginTypes(data);
 	        }
-	        getAuthTypes().catch((error) => require$$1$3.isAbortException(error) ? '' : setErrorMessage(String(error)));
+	        getAuthTypes().catch((error) => {
+	            require$$1$3.isAbortException(error) ? '' : setErrorMessage(String(error));
+	        });
 	        return () => {
 	            controller.abort();
 	        };
@@ -39569,11 +39648,17 @@
 	    const allowGuest = loginTypes.includes('guest');
 	    return (React__default["default"].createElement(Dialog, { open: true, title: `Log in to ${name}`, handleClose: handleClose, maxWidth: false, "data-testid": "login-apollo" },
 	        React__default["default"].createElement(material.DialogContent, { style: { display: 'flex', flexDirection: 'column', paddingTop: 8 } },
-	            allowGoogle ? (React__default["default"].createElement(GoogleButton, { disabled: !allowGoogle, onClick: () => handleClick('google') })) : null,
-	            allowMicrosoft ? (React__default["default"].createElement(MicrosoftButton, { disabled: !allowMicrosoft, onClick: () => handleClick('microsoft') })) : null,
+	            allowGoogle ? (React__default["default"].createElement(GoogleButton, { disabled: !allowGoogle, onClick: () => {
+	                    handleClick('google');
+	                } })) : null,
+	            allowMicrosoft ? (React__default["default"].createElement(MicrosoftButton, { disabled: !allowMicrosoft, onClick: () => {
+	                    handleClick('microsoft');
+	                } })) : null,
 	            allowGuest ? (React__default["default"].createElement(React__default["default"].Fragment, null,
 	                React__default["default"].createElement(material.Divider, { className: classes.divider }),
-	                React__default["default"].createElement(GuestButton, { onClick: () => handleClick('guest') }))) : null),
+	                React__default["default"].createElement(GuestButton, { onClick: () => {
+	                        handleClick('guest');
+	                    } }))) : null),
 	        React__default["default"].createElement(material.DialogActions, null,
 	            React__default["default"].createElement(material.Button, { variant: "outlined", type: "submit", onClick: () => {
 	                    handleClose();
@@ -39582,6 +39667,7 @@
 	            React__default["default"].createElement(material.DialogContentText, { color: "error" }, errorMessage))) : null));
 	};
 
+	/* eslint-disable @typescript-eslint/no-unused-vars */
 	const inWebWorker$1 = typeof sessionStorage === 'undefined';
 	const stateModelFactory$2 = (configSchema) => {
 	    return pluggableElementTypes.InternetAccount.named('ApolloInternetAccount')
@@ -39633,8 +39719,6 @@
 	        return {
 	            addMessageChannel(resolve, reject) {
 	                listener = (event) => {
-	                    // this should probably get better handling, but ignored for now
-	                    // eslint-disable-next-line @typescript-eslint/no-floating-promises
 	                    this.finishOAuthWindow(event, resolve, reject);
 	                };
 	                window.addEventListener('message', listener);
@@ -39642,9 +39726,10 @@
 	            deleteMessageChannel() {
 	                window.removeEventListener('message', listener);
 	            },
-	            async finishOAuthWindow(event, resolve, reject) {
+	            finishOAuthWindow(event, resolve, reject) {
 	                if (event.data.name !== `JBrowseAuthWindow-${self.internetAccountId}`) {
-	                    return this.deleteMessageChannel();
+	                    this.deleteMessageChannel();
+	                    return;
 	                }
 	                const redirectUriWithInfo = event.data.redirectUri;
 	                const fixedQueryString = redirectUriWithInfo.replace('#', '?');
@@ -39654,11 +39739,12 @@
 	                const token = urlParams.get('access_token');
 	                this.deleteMessageChannel();
 	                if (!token) {
-	                    return reject(new Error('Error with token endpoint'));
+	                    reject(new Error('Error with token endpoint'));
+	                    return;
 	                }
 	                self.storeToken(token);
 	                self.setRole();
-	                return resolve(token);
+	                resolve(token);
 	            },
 	            async openAuthWindow(type, resolve, reject) {
 	                const redirectUri = require$$1$3.isElectron
@@ -39681,7 +39767,6 @@
 	                    const eventFromDesktop = new MessageEvent('message', {
 	                        data: { name: eventName, redirectUri: redirectUriFromElectron },
 	                    });
-	                    // eslint-disable-next-line @typescript-eslint/no-floating-promises
 	                    this.finishOAuthWindow(eventFromDesktop, resolve, reject);
 	                }
 	                else {
@@ -39729,7 +39814,8 @@
 	            const response = await fetch(uri);
 	            if (!response.ok) {
 	                const errorMessage = await createFetchErrorMessage(response, 'Error when logging in');
-	                return reject(new Error(errorMessage));
+	                reject(new Error(errorMessage));
+	                return;
 	            }
 	            const { token } = await response.json();
 	            resolve(token);
@@ -39765,8 +39851,7 @@
 	        }),
 	        getMissingChanges: require$$0$2.flow(function* getMissingChanges() {
 	            const { session } = require$$0$2.getRoot(self);
-	            const { changeManager } = session
-	                .apolloDataStore;
+	            const { changeManager } = session.apolloDataStore;
 	            if (!self.lastChangeSequenceNumber) {
 	                throw new Error('No LastChangeSequence stored in session. Please, refresh you browser to get last updates from server');
 	            }
@@ -39790,7 +39875,7 @@
 	            const serializedChanges = yield response.json();
 	            for (const serializedChange of serializedChanges) {
 	                const change = dist$3.Change.fromJSON(serializedChange);
-	                void changeManager?.submit(change, { submitToBackend: false });
+	                void changeManager.submit(change, { submitToBackend: false });
 	            }
 	        }),
 	    }))
@@ -39829,7 +39914,7 @@
 	                    return; // we did this change, no need to apply it again
 	                }
 	                const change = dist$3.Change.fromJSON(message.changeInfo);
-	                void changeManager?.submit(change, { submitToBackend: false });
+	                void changeManager.submit(change, { submitToBackend: false });
 	            });
 	            socket.on('USER_LOCATION', (message) => {
 	                const { channel, locations, userName, userSessionId } = message;
@@ -39884,7 +39969,9 @@
 	            let timeoutId;
 	            return (userLocation) => {
 	                clearTimeout(timeoutId);
-	                timeoutId = setTimeout(() => fn(userLocation), debounceTimeout);
+	                timeoutId = setTimeout(() => {
+	                    fn(userLocation);
+	                }, debounceTimeout);
 	            };
 	        };
 	        return { postUserLocation: debouncePostUserLocation(postUserLocation) };
@@ -40080,6 +40167,7 @@
 	}();
 	var _default$6 = simpleFeature["default"] = SimpleFeature;
 
+	/* eslint-disable @typescript-eslint/no-unsafe-assignment */
 	function isApolloMessageData$1(data) {
 	    return (typeof data === 'object' &&
 	        data !== null &&
@@ -40268,8 +40356,9 @@
 	    const { session } = displayModel;
 	    const { collaborators: collabs } = session;
 	    // bridging mobx observability and React useEffect observability
-	    // eslint-disable-next-line react-hooks/exhaustive-deps
-	    React.useEffect(() => mobx.autorun(() => setCollaborators(mobx.toJS(collabs))), []);
+	    React.useEffect(() => mobx.autorun(() => {
+	        setCollaborators(mobx.toJS(collabs));
+	    }), []);
 	    const [region] = regions;
 	    const totalWidth = (region.end - region.start) / bpPerPx;
 	    const { apolloFeatureUnderMouse, apolloRowHeight: height, apolloRowUnderMouse, changeManager, codonLayout, featureLayout, features, featuresHeight: totalHeight, getAssemblyId, selectedFeature, setApolloFeatureUnderMouse, setApolloRowUnderMouse, setSelectedFeature, showIntronLines: showLines, showStartCodons: showStarts, showStopCodons: showStops, } = displayModel;
@@ -40650,7 +40739,7 @@
 	                    assembly,
 	                });
 	            }
-	            await changeManager?.submit(change);
+	            await changeManager.submit(change);
 	        }
 	        // eslint-disable-next-line unicorn/no-useless-undefined
 	        setDragging(undefined);
@@ -40751,6 +40840,7 @@
 
 	var apolloSixFrameRendererConfigSchema = configuration.ConfigurationSchema('ApolloSixFrameRenderer', {}, { explicitlyTyped: true });
 
+	/* eslint-disable @typescript-eslint/require-await */
 	class ApolloSixFrameRenderer extends pluggableElementTypes.RendererType {
 	    async renderInClient(_rpcManager, args) {
 	        return this.render(args);
@@ -40857,6 +40947,7 @@
 	}(BaseResult);
 	BaseResults.RefSequenceResult = RefSequenceResult;
 
+	/* eslint-disable @typescript-eslint/no-unsafe-return */
 	class ApolloTextSearchAdapter extends BaseAdapter.BaseAdapter {
 	    get baseURL() {
 	        return configuration.readConfObject(this.config, 'baseURL').uri;
@@ -40921,6 +41012,7 @@
 	    }));
 	}
 
+	/* eslint-disable @typescript-eslint/no-unnecessary-condition */
 	var PhaseEnum;
 	(function (PhaseEnum) {
 	    PhaseEnum[PhaseEnum["zero"] = 0] = "zero";
@@ -40974,7 +41066,7 @@
 	                strand,
 	            },
 	        });
-	        await changeManager.submit?.(change);
+	        await changeManager.submit(change);
 	        notify('Feature added successfully', 'success');
 	        handleClose();
 	        event.preventDefault();
@@ -41007,7 +41099,7 @@
 	            }
 	        }
 	    }
-	    async function handleChangePhase(e) {
+	    function handleChangePhase(e) {
 	        setErrorMessage('');
 	        setPhase(e.target.value);
 	        switch (Number(e.target.value)) {
@@ -41033,8 +41125,12 @@
 	    return (React__default["default"].createElement(Dialog, { open: true, title: "Add new feature", handleClose: handleClose, maxWidth: false, "data-testid": "add-feature-dialog" },
 	        React__default["default"].createElement("form", { onSubmit: onSubmit },
 	            React__default["default"].createElement(material.DialogContent, { style: { display: 'flex', flexDirection: 'column' } },
-	                React__default["default"].createElement(material.TextField, { margin: "dense", id: "start", label: "Start", type: "number", fullWidth: true, variant: "outlined", value: Number(start), onChange: (e) => setStart(e.target.value) }),
-	                React__default["default"].createElement(material.TextField, { margin: "dense", id: "end", label: "End", type: "number", fullWidth: true, variant: "outlined", value: end, onChange: (e) => setEnd(e.target.value), error: error, helperText: error ? '"End" must be greater than "Start"' : null }),
+	                React__default["default"].createElement(material.TextField, { margin: "dense", id: "start", label: "Start", type: "number", fullWidth: true, variant: "outlined", value: Number(start), onChange: (e) => {
+	                        setStart(e.target.value);
+	                    } }),
+	                React__default["default"].createElement(material.TextField, { margin: "dense", id: "end", label: "End", type: "number", fullWidth: true, variant: "outlined", value: end, onChange: (e) => {
+	                        setEnd(e.target.value);
+	                    }, error: error, helperText: error ? '"End" must be greater than "Start"' : null }),
 	                React__default["default"].createElement(OntologyTermAutocomplete, { session: session, ontologyName: "Sequence Ontology", style: { width: 170 }, value: type, filterTerms: isOntologyClass, renderInput: (params) => (React__default["default"].createElement(material.TextField, { ...params, label: "Type", variant: "outlined", fullWidth: true })), onChange: (oldValue, newValue) => {
 	                        if (newValue) {
 	                            handleChangeType(newValue);
@@ -41114,7 +41210,9 @@
 	                setDisplayGridData(data);
 	            }
 	        }
-	        getGridData().catch((error) => setErrorMessage(String(error)));
+	        getGridData().catch((error) => {
+	            setErrorMessage(String(error));
+	        });
 	    }, [selectedAssembly, apolloInternetAccount, baseURL]);
 	    function handleChangeAssembly(e) {
 	        const newAssembly = assemblies.find((asm) => asm.name === e.target.value);
@@ -41267,7 +41365,7 @@
 	                cdsFeature.start = Math.min(cdsFeature.start, exon.start);
 	                cdsFeature.end = Math.max(cdsFeature.end, exon.end);
 	                const { end, start } = exon;
-	                discontinuousLocations?.push({ start, end, phase });
+	                discontinuousLocations.push({ start, end, phase });
 	                const localPhase = (end - start) % 3;
 	                phase = ((phase + localPhase) % 3);
 	                const newExon = {
@@ -41295,7 +41393,7 @@
 	                addedFeature: newFeature,
 	            });
 	            const session = require$$1$3.getSession(self);
-	            await session.apolloDataStore.changeManager.submit?.(change);
+	            await session.apolloDataStore.changeManager.submit(change);
 	            session.notify('Annotation added successfully', 'success');
 	        },
 	    }))
@@ -41322,6 +41420,7 @@
 	    return pluggableElement;
 	}
 
+	/* eslint-disable @typescript-eslint/no-unsafe-argument */
 	const StringTextField = mobxReact.observer(function StringTextField({ onChangeCommitted, value: initialValue, ...props }) {
 	    const [value, setValue] = React.useState(String(initialValue));
 	    const [blur, setBlur] = React.useState(false);
@@ -41350,7 +41449,9 @@
 	            if (value !== String(initialValue)) {
 	                onChangeCommitted(value);
 	            }
-	        }, inputRef: (node) => setInputNode(node) }));
+	        }, inputRef: (node) => {
+	            setInputNode(node);
+	        } }));
 	});
 
 	const reservedKeys = new Map([
@@ -41487,7 +41588,7 @@
 	            featureId: feature._id,
 	            attributes: attrs,
 	        });
-	        await changeManager.submit?.(change);
+	        await changeManager.submit(change);
 	        notify('Feature attributes modified successfully', 'success');
 	    }
 	    function handleAddNewAttributeChange() {
@@ -41570,6 +41671,7 @@
 	        errorMessage ? (React__default["default"].createElement(material.Typography, { color: "error" }, errorMessage)) : null));
 	});
 
+	/* eslint-disable @typescript-eslint/no-unsafe-argument */
 	const NumberTextField = mobxReact.observer(function NumberTextField({ onChangeCommitted, value: initialValue, ...props }) {
 	    const [value, setValue] = React.useState(String(initialValue));
 	    const [blur, setBlur] = React.useState(false);
@@ -41605,14 +41707,18 @@
 	                    onChangeCommitted(valueAsNumber);
 	                }
 	            }
-	        }, inputRef: (node) => setInputNode(node), error: error, helperText: error ? 'Not a valid number' : undefined }));
+	        }, inputRef: (node) => {
+	            setInputNode(node);
+	        }, error: error, helperText: error ? 'Not a valid number' : undefined }));
 	});
 
 	const BasicInformation = mobxReact.observer(function BasicInformation({ assembly, feature, session, }) {
 	    const [errorMessage, setErrorMessage] = React.useState('');
 	    const [typeWarningText, setTypeWarningText] = React.useState('');
 	    const { _id, assemblyId, end, start, strand, type } = feature;
-	    const notifyError = (e) => session.notify(e.message, 'error');
+	    const notifyError = (e) => {
+	        session.notify(e.message, 'error');
+	    };
 	    const { changeManager } = session.apolloDataStore;
 	    function handleTypeChange(newType) {
 	        setErrorMessage('');
@@ -41708,7 +41814,7 @@
 	                assembly,
 	                refName,
 	            });
-	            session.showWidget?.(apolloFeatureWidget);
+	            session.showWidget(apolloFeatureWidget);
 	        }
 	    };
 	    if (!(parent || (children && children.size > 0))) {
@@ -41720,12 +41826,16 @@
 	            React__default["default"].createElement(material.Typography, { variant: "h5" }, "Parent"),
 	            React__default["default"].createElement(material.Paper, { elevation: 6, className: classes.paper },
 	                `Start: ${parent.start}, End: ${parent.end}, Type: ${parent.type}`,
-	                React__default["default"].createElement(material.Button, { variant: "contained", onClick: () => onButtonClick(parent) }, "Go to parent")))),
+	                React__default["default"].createElement(material.Button, { variant: "contained", onClick: () => {
+	                        onButtonClick(parent);
+	                    } }, "Go to parent")))),
 	        children && children.size > 0 && (React__default["default"].createElement(React__default["default"].Fragment, null,
 	            React__default["default"].createElement(material.Typography, { variant: "h5" }, "Children"),
 	            [...children.values()].map((child) => (React__default["default"].createElement(material.Paper, { elevation: 6, className: classes.paper, key: child._id },
 	                `Start: ${child.start}, End: ${child.end}, Type: ${child.type}`,
-	                React__default["default"].createElement(material.Button, { variant: "contained", onClick: () => onButtonClick(child) }, "Go to child"))))))));
+	                React__default["default"].createElement(material.Button, { variant: "contained", onClick: () => {
+	                        onButtonClick(child);
+	                    } }, "Go to child"))))))));
 	});
 
 	function formatSequence(seq, refName, start, end, wrap) {
@@ -41823,6 +41933,10 @@
 	    value: true
 	  });
 	  exports.AnnotationFeature = exports.LateAnnotationFeature = void 0;
+	  /* eslint-disable @typescript-eslint/no-unsafe-argument */
+	  /* eslint-disable @typescript-eslint/no-unsafe-member-access */
+	  /* eslint-disable @typescript-eslint/no-unsafe-call */
+	  /* eslint-disable @typescript-eslint/no-unsafe-assignment */
 	  var mobx_state_tree_1 = require$$0__default$1["default"];
 	  var _1 = dist;
 	  exports.LateAnnotationFeature = /*#__PURE__*/mobx_state_tree_1.types.late(function () {
@@ -42276,6 +42390,7 @@
 	  tslib_1.__exportStar(CheckResult, exports);
 	})(dist);
 
+	/* eslint-disable @typescript-eslint/no-unsafe-call */
 	const ApolloFeatureDetailsWidgetModel = require$$0$2.types
 	    .model('ApolloFeatureDetailsWidget', {
 	    id: mst.ElementId,
@@ -42558,7 +42673,9 @@
 	                if (value !== initialValue) {
 	                    onChangeCommitted(value).catch(notifyError);
 	                }
-	            }, ref: (node) => setInputNode(node) })));
+	            }, ref: (node) => {
+	                setInputNode(node);
+	            } })));
 	});
 
 	const useStyles$4 = mui.makeStyles()((theme) => ({
@@ -42617,7 +42734,9 @@
 	        tabularEditorState.setFeatureCollapsed(_id, expanded);
 	    };
 	    // pop up a snackbar in the session notifying user of an error
-	    const notifyError = (e) => session.notify(e.message, 'error');
+	    const notifyError = (e) => {
+	        session.notify(e.message, 'error');
+	    };
 	    return (React__default["default"].createElement(React__default["default"].Fragment, null,
 	        React__default["default"].createElement("tr", { onMouseEnter: (_e) => {
 	                displayState.setApolloHover({
@@ -42807,6 +42926,7 @@
 	}), 'UnfoldLess');
 	default_1$3 = UnfoldLess["default"] = _default$3;
 
+	/* eslint-disable @typescript-eslint/unbound-method */
 	const useStyles$2 = mui.makeStyles()({
 	    toolbar: {
 	        width: '100%',
@@ -42826,9 +42946,13 @@
 	        React__default["default"].createElement(material.Tooltip, { title: "Collapse all" },
 	            React__default["default"].createElement(material.IconButton, { "aria-label": "collapse", sx: { marginTop: 0 }, onClick: model.collapseAllFeatures },
 	                React__default["default"].createElement(default_1$3, null))),
-	        React__default["default"].createElement(material.TextField, { className: classes.filterText, label: "Filter features", value: model.filterText, sx: { marginTop: 0 }, variant: "outlined", onChange: (event) => model.setFilterText(event.target.value), InputProps: {
+	        React__default["default"].createElement(material.TextField, { className: classes.filterText, label: "Filter features", value: model.filterText, sx: { marginTop: 0 }, variant: "outlined", onChange: (event) => {
+	                model.setFilterText(event.target.value);
+	            }, InputProps: {
 	                endAdornment: (React__default["default"].createElement(material.InputAdornment, { position: "end" },
-	                    React__default["default"].createElement(material.IconButton, { onClick: () => model.clearFilterText() },
+	                    React__default["default"].createElement(material.IconButton, { onClick: () => {
+	                            model.clearFilterText();
+	                        } },
 	                        React__default["default"].createElement(default_1$4, null)))),
 	            } })));
 	});
@@ -43130,7 +43254,7 @@
 	                        assembly: currentAssemblyId,
 	                        refName: region.refName,
 	                    });
-	                    session.showWidget?.(apolloFeatureWidget);
+	                    session.showWidget(apolloFeatureWidget);
 	                },
 	            });
 	        }
@@ -43544,7 +43668,7 @@
 	        },
 	        get changeManager() {
 	            return self.session.apolloDataStore
-	                ?.changeManager;
+	                .changeManager;
 	        },
 	        getAssemblyId(assemblyName) {
 	            const { assemblyManager } = self.session;
@@ -43561,7 +43685,7 @@
 	    }))
 	        .actions((self) => ({
 	        setSelectedFeature(feature) {
-	            return self.session.apolloSetSelectedFeature(feature);
+	            self.session.apolloSetSelectedFeature(feature);
 	        },
 	        afterAttach() {
 	            require$$0$2.addDisposer(self, mobx.autorun(() => {
@@ -43856,8 +43980,8 @@
 	        M: '#33ee33',
 	        '*': '#f44336',
 	    };
-	    if (colorMap[letter?.toUpperCase()] !== undefined) {
-	        return colorMap[letter?.toUpperCase()];
+	    if (colorMap[letter.toUpperCase()] !== undefined) {
+	        return colorMap[letter.toUpperCase()];
 	    }
 	    return bpPerPx <= 0.1 ? rowColorCode : 'lightgray';
 	}
@@ -44237,7 +44361,7 @@
 	                let featureRow;
 	                let i = 0;
 	                for (const [, f] of children ?? new Map()) {
-	                    if (f._id === apolloSelectedFeature?._id) {
+	                    if (f._id === apolloSelectedFeature._id) {
 	                        featureEntry = f;
 	                        featureRow = i;
 	                    }
@@ -44306,7 +44430,7 @@
 	        let featureRow;
 	        let i = 0;
 	        for (const [, f] of topLevelFeature.children ?? new Map()) {
-	            if (f._id === feature?._id) {
+	            if (f._id === feature._id) {
 	                featureEntry = f;
 	                featureRow = i;
 	            }
@@ -44668,10 +44792,10 @@
 	        }
 	        if (feature.type !== 'CDS') {
 	            const adjacentExons = this.adjacentExonsOfExon(feature, topLevelFeature);
-	            if (adjacentExons?.nextExon && bp >= adjacentExons?.nextExon.start - 1) {
+	            if (adjacentExons?.nextExon && bp >= adjacentExons.nextExon.start - 1) {
 	                return;
 	            }
-	            if (adjacentExons?.prevExon && bp <= adjacentExons?.prevExon.end + 1) {
+	            if (adjacentExons?.prevExon && bp <= adjacentExons.prevExon.end + 1) {
 	                return;
 	            }
 	            const dls = this.cdsDlsForExon(feature, topLevelFeature);
@@ -44945,7 +45069,7 @@
 	    }
 	    getFeatureFromLayout(feature, bp, row) {
 	        const layoutRow = this.featuresForRow(feature)[row];
-	        return layoutRow?.find((f) => bp >= f.start && bp <= f.end);
+	        return layoutRow.find((f) => bp >= f.start && bp <= f.end);
 	    }
 	    getRowForFeature(feature, childFeature) {
 	        const rows = this.featuresForRow(feature);
@@ -45105,7 +45229,7 @@
 	                let featureRow;
 	                let i = 0;
 	                for (const [, f] of children ?? new Map()) {
-	                    if (f._id === apolloSelectedFeature?._id) {
+	                    if (f._id === apolloSelectedFeature._id) {
 	                        featureEntry = f;
 	                        featureRow = i;
 	                    }
@@ -45363,7 +45487,7 @@
 	    }
 	    getFeatureFromLayout(feature, bp, row) {
 	        const layoutRow = this.featuresForRow(feature)[row];
-	        return layoutRow?.find((f) => bp >= f.start && bp <= f.end);
+	        return layoutRow.find((f) => bp >= f.start && bp <= f.end);
 	    }
 	    getRowForFeature(feature, childFeature) {
 	        const rows = this.featuresForRow(feature);
@@ -45602,7 +45726,7 @@
 	    const LinearApolloDisplayRendering = mouseEventsModelIntermediateFactory(pluginManager, configSchema);
 	    return LinearApolloDisplayRendering.actions((self) => ({
 	        afterAttach() {
-	            require$$0$2.addDisposer(self, mobx.autorun(async () => {
+	            require$$0$2.addDisposer(self, mobx.autorun(() => {
 	                if (!self.lgv.initialized || self.regionCannotBeRendered()) {
 	                    return;
 	                }
@@ -45889,6 +46013,7 @@
 	}), 'Error');
 	default_1 = _Error["default"] = _default;
 
+	/* eslint-disable @typescript-eslint/unbound-method */
 	const useStyles$1 = mui.makeStyles()((theme) => ({
 	    canvasContainer: {
 	        position: 'relative',
@@ -45914,7 +46039,9 @@
 	    const { apolloRowHeight, contextMenuItems: getContextMenuItems, cursor, featuresHeight, isShown, onMouseDown, onMouseLeave, onMouseMove, onMouseUp, regionCannotBeRendered, session, setCanvas, setCollaboratorCanvas, setOverlayCanvas, setSeqTrackCanvas, setSeqTrackOverlayCanvas, setTheme, tabularEditor, } = model;
 	    const { classes } = useStyles$1();
 	    const lgv = require$$1$3.getContainingView(model);
-	    React.useEffect(() => setTheme(theme), [theme, setTheme]);
+	    React.useEffect(() => {
+	        setTheme(theme);
+	    }, [theme, setTheme]);
 	    const [contextCoord, setContextCoord] = React.useState();
 	    const [contextMenuItems, setContextMenuItems] = React.useState([]);
 	    const message = regionCannotBeRendered();
@@ -45973,7 +46100,7 @@
 	                const assembly = assemblyManager.get(region.assemblyName);
 	                return [...session.apolloDataStore.checkResults.values()]
 	                    .filter((checkResult) => assembly?.isValidRefName(checkResult.refSeq) &&
-	                    assembly?.getCanonicalRefName(checkResult.refSeq) ===
+	                    assembly.getCanonicalRefName(checkResult.refSeq) ===
 	                        region.refName &&
 	                    require$$1$3.doesIntersect2(region.start, region.end, checkResult.start, checkResult.end))
 	                    .map((checkResult) => {
@@ -46113,7 +46240,9 @@
 	        model.setDetailsHeight(model.detailsHeight - delta);
 	    };
 	    const canvasScrollContainerRef = React.useRef(null);
-	    React.useEffect(() => scrollSelectedFeatureIntoView(model, canvasScrollContainerRef), [model, selectedFeature]);
+	    React.useEffect(() => {
+	        scrollSelectedFeatureIntoView(model, canvasScrollContainerRef);
+	    }, [model, selectedFeature]);
 	    return (React__default["default"].createElement("div", { className: classes.details, style: { height: overallHeight } },
 	        React__default["default"].createElement(AccordionControl, { open: isShown, title: "Graphical", onClick: toggleShown }),
 	        React__default["default"].createElement("div", { className: classes.shading, ref: canvasScrollContainerRef, style: { height: featureAreaHeight } },
@@ -46145,6 +46274,7 @@
 	    return mobxReact.observer(ApolloDisplayComponent);
 	}
 
+	/* eslint-disable @typescript-eslint/no-unsafe-assignment */
 	const ApolloJobModel = require$$0$2.types
 	    .model('JobsManager', {})
 	    .views((self) => ({
@@ -46232,6 +46362,7 @@
 	    }
 	}
 
+	/* eslint-disable @typescript-eslint/no-unsafe-assignment */
 	class ChangeManager {
 	    dataStore;
 	    constructor(dataStore) {
@@ -46343,6 +46474,7 @@
 	    }
 	}
 
+	/* eslint-disable @typescript-eslint/no-base-to-string */
 	class CollaborationServerDriver extends BackendDriver {
 	    inFlight = new Map();
 	    async fetch(internetAccount, info, init) {
@@ -46401,7 +46533,7 @@
 	            const errorMessage = await createFetchErrorMessage(response, 'getFeatures failed');
 	            throw new Error(errorMessage);
 	        }
-	        await this.checkSocket(assemblyName, refName, internetAccount);
+	        this.checkSocket(assemblyName, refName, internetAccount);
 	        return response.json();
 	    }
 	    /**
@@ -46410,7 +46542,7 @@
 	     * @param refSeq - refSeqName
 	     * @param internetAccount - internet account
 	     */
-	    async checkSocket(assembly, refSeq, internetAccount) {
+	    checkSocket(assembly, refSeq, internetAccount) {
 	        const { socket } = internetAccount;
 	        const token = internetAccount.retrieveToken();
 	        const channel = `${assembly}-${refSeq}`;
@@ -46453,7 +46585,7 @@
 	        if (!apolloAssembly) {
 	            apolloAssembly = this.clientStore.addAssembly(assemblyName);
 	        }
-	        let apolloRefSeq = apolloAssembly?.refSeqs.get(refSeq);
+	        let apolloRefSeq = apolloAssembly.refSeqs.get(refSeq);
 	        if (!apolloRefSeq) {
 	            apolloRefSeq = apolloAssembly.addRefSeq(refSeq, refName);
 	        }
@@ -46474,7 +46606,7 @@
 	        const seqPromise = this.getSeqFromServer(internetAccount, uri, apolloRefSeq, start, end);
 	        this.inFlight.set(inFlightKey, seqPromise);
 	        const seq = await seqPromise;
-	        await this.checkSocket(assemblyName, refName, internetAccount);
+	        this.checkSocket(assemblyName, refName, internetAccount);
 	        this.inFlight.delete(inFlightKey);
 	        return { seq, refSeq };
 	    }
@@ -46612,6 +46744,7 @@
 	    }
 	}
 
+	/* eslint-disable @typescript-eslint/require-await */
 	class DesktopFileDriver extends BackendDriver {
 	    async loadAssembly(assemblyName) {
 	        const { assemblyManager } = require$$1$3.getSession(this.clientStore);
@@ -47326,7 +47459,7 @@
 	        },
 	        get changeManager() {
 	            const session = require$$1$3.getSession(self);
-	            return session.apolloDataStore?.changeManager;
+	            return session.apolloDataStore.changeManager;
 	        },
 	        get sequence() {
 	            const { regions } = self;
@@ -47520,7 +47653,7 @@
 	        .actions((self) => ({
 	        setSelectedFeature(feature) {
 	            const session = require$$1$3.getSession(self);
-	            return session.apolloSetSelectedFeature(feature);
+	            session.apolloSetSelectedFeature(feature);
 	        },
 	        setApolloFeatureUnderMouse(feature) {
 	            self.apolloFeatureUnderMouse = feature;
@@ -47557,25 +47690,32 @@
 	                    label: 'Show start codons',
 	                    type: 'checkbox',
 	                    checked: self.showStartCodons,
-	                    onClick: () => self.toggleShowStartCodons(),
+	                    onClick: () => {
+	                        self.toggleShowStartCodons();
+	                    },
 	                },
 	                {
 	                    label: 'Show stop codons',
 	                    type: 'checkbox',
 	                    checked: self.showStopCodons,
-	                    onClick: () => self.toggleShowStopCodons(),
+	                    onClick: () => {
+	                        self.toggleShowStopCodons();
+	                    },
 	                },
 	                {
 	                    label: 'Show intron lines',
 	                    type: 'checkbox',
 	                    checked: self.showIntronLines,
-	                    onClick: () => self.toggleShowIntronLines(),
+	                    onClick: () => {
+	                        self.toggleShowIntronLines();
+	                    },
 	                },
 	            ];
 	        },
 	    }));
 	}
 
+	/* eslint-disable @typescript-eslint/no-unsafe-assignment */
 	function isApolloMessageData(data) {
 	    return (typeof data === 'object' &&
 	        data !== null &&