@apollo-annotation/jbrowse-plugin-apollo 0.1.21 → 0.2.0

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@apollo-annotation/jbrowse-plugin-apollo",
-  "version": "0.1.21",
+  "version": "0.2.0",
   "description": "Apollo plugin for JBrowse 2",
   "keywords": [
     "jbrowse",
@@ -48,9 +48,9 @@
     }
   },
   "dependencies": {
-    "@apollo-annotation/common": "^0.1.21",
-    "@apollo-annotation/mst": "^0.1.21",
-    "@apollo-annotation/shared": "^0.1.21",
+    "@apollo-annotation/common": "^0.2.0",
+    "@apollo-annotation/mst": "^0.2.0",
+    "@apollo-annotation/shared": "^0.2.0",
     "@emotion/react": "^11.10.6",
     "@emotion/styled": "^11.10.6",
     "@gmod/gff": "1.2.0",
@@ -67,7 +67,6 @@
     "idb": "^7.1.1",
     "jsonpath": "^1.1.1",
     "nanoid": "^4.0.2",
-    "regenerator-runtime": "^0.13.9",
     "socket.io-client": "^4.5.4",
     "tslib": "^2.3.1"
   },

package/src/ApolloInternetAccount/components/AuthTypeSelector.tsx

@@ -1,5 +1,5 @@
 /* eslint-disable @typescript-eslint/use-unknown-in-catch-callback-variable */
-import { isAbortException } from '@jbrowse/core/util'
+import { isAbortException } from '@jbrowse/core/util/aborting'
 import {
   Button,
   DialogActions,
@@ -51,7 +51,9 @@ export const AuthTypeSelector = ({
       setLoginTypes(data)
     }
     getAuthTypes().catch((error) => {
-      isAbortException(error) ? '' : setErrorMessage(String(error))
+      if (!isAbortException(error)) {
+        setErrorMessage(String(error))
+      }
     })
     return () => {
       controller.abort()

package/src/ApolloInternetAccount/configSchema.ts

@@ -23,7 +23,7 @@ export type ApolloInternetAccountConfigModel = typeof ApolloConfigSchema
 
 // eslint disable because of
 // https://mobx-state-tree.js.org/tips/typescript#using-a-mst-type-at-design-time
-// eslint-disable-next-line @typescript-eslint/no-empty-interface
+// eslint-disable-next-line @typescript-eslint/no-empty-object-type
 export interface ApolloInternetAccountConfig
   extends Instance<ApolloInternetAccountConfigModel> {}
 export default ApolloConfigSchema

package/src/ApolloInternetAccount/model.ts

@@ -135,7 +135,7 @@ const stateModelFactory = (configSchema: ApolloInternetAccountConfigModel) => {
         ) {
           const redirectUri = isElectron
             ? 'http://localhost/auth'
-            : window.location.origin + window.location.pathname
+            : globalThis.location.origin + globalThis.location.pathname
           const url = new URL('auth/login', self.baseURL)
           const params = new URLSearchParams({
             type,
@@ -144,7 +144,7 @@ const stateModelFactory = (configSchema: ApolloInternetAccountConfigModel) => {
           url.search = params.toString()
           const eventName = `JBrowseAuthWindow-${self.internetAccountId}`
           if (isElectron) {
-            const { ipcRenderer } = window.require('electron')
+            const { ipcRenderer } = globalThis.require('electron')
             const redirectUriFromElectron = await ipcRenderer.invoke(
               'openAuthWindow',
               {
@@ -345,14 +345,9 @@ const stateModelFactory = (configSchema: ApolloInternetAccountConfigModel) => {
         socket.on(
           'REQUEST_INFORMATION',
           (message: RequestUserInformationMessage) => {
-            const { channel, reqType, userSessionId } = message
+            const { channel, userSessionId } = message
             if (channel === 'REQUEST_INFORMATION' && userSessionId !== token) {
-              switch (reqType) {
-                case 'CURRENT_LOCATION': {
-                  session.broadcastLocations()
-                  break
-                }
-              }
+              session.broadcastLocations()
             }
           },
         )
@@ -462,6 +457,6 @@ export type ApolloInternetAccountStateModel = ReturnType<
 >
 // eslint disable because of
 // https://mobx-state-tree.js.org/tips/typescript#using-a-mst-type-at-design-time
-// eslint-disable-next-line @typescript-eslint/no-empty-interface
+// eslint-disable-next-line @typescript-eslint/no-empty-object-type
 export interface ApolloInternetAccountModel
   extends Instance<ApolloInternetAccountStateModel> {}

package/src/ApolloRefNameAliasAdapter/ApolloRefNameAliasAdapter.ts

@@ -88,7 +88,7 @@ export default class RefNameAliasAdapter
     return refNameAliases
   }
 
-  async freeResources() {
+  freeResources() {
     // no resources to free
   }
 }

package/src/ApolloSixFrameRenderer/components/ApolloRendering.tsx

@@ -551,7 +551,7 @@ function ApolloRendering(props: ApolloRenderingProps) {
       }
       await changeManager.submit(change)
     }
-    // eslint-disable-next-line unicorn/no-useless-undefined
+
     setDragging(undefined)
     setMovedDuringLastMouseDown(false)
   }
@@ -575,7 +575,6 @@ function ApolloRendering(props: ApolloRenderingProps) {
         }
         data-testid="base_linear_display_context_menu"
         onClose={() => {
-          // eslint-disable-next-line unicorn/no-useless-undefined
           setContextMenuFeature(undefined)
         }}
       >
@@ -595,7 +594,7 @@ function ApolloRendering(props: ApolloRenderingProps) {
                   session,
                   handleClose: () => {
                     doneCallback()
-                    // eslint-disable-next-line unicorn/no-useless-undefined
+
                     setContextMenuFeature(undefined)
                   },
                   changeManager,
@@ -625,7 +624,7 @@ function ApolloRendering(props: ApolloRenderingProps) {
                   session,
                   handleClose: () => {
                     doneCallback()
-                    // eslint-disable-next-line unicorn/no-useless-undefined
+
                     setContextMenuFeature(undefined)
                   },
                   changeManager,
@@ -654,7 +653,7 @@ function ApolloRendering(props: ApolloRenderingProps) {
                   session,
                   handleClose: () => {
                     doneCallback()
-                    // eslint-disable-next-line unicorn/no-useless-undefined
+
                     setContextMenuFeature(undefined)
                   },
                   changeManager,

package/src/BackendDrivers/DesktopFileDriver.ts

@@ -31,7 +31,8 @@ export class DesktopFileDriver extends BackendDriver {
     const { file } = getConf(assembly, ['sequence', 'metadata']) as {
       file: string
     }
-    // eslint-disable-next-line @typescript-eslint/no-var-requires
+
+    // eslint-disable-next-line @typescript-eslint/no-require-imports
     const fs = require('node:fs') as typeof import('fs')
     const fileContents = await fs.promises.readFile(file, 'utf8')
     return loadAssemblyIntoClient(assemblyName, fileContents, this.clientStore)
@@ -165,7 +166,7 @@ export class DesktopFileDriver extends BackendDriver {
 
     const gff3Contents = gff.formatSync(gff3Items)
 
-    // eslint-disable-next-line @typescript-eslint/no-var-requires
+    // eslint-disable-next-line @typescript-eslint/no-require-imports
     const fs = require('node:fs') as typeof import('fs')
     await fs.promises.writeFile(file, gff3Contents, 'utf8')
 

package/src/FeatureDetailsWidget/Attributes.tsx

@@ -242,12 +242,7 @@ export const Attributes = observer(function Attributes({
 
   return (
     <>
-      <Typography
-        style={{ display: 'inline', marginLeft: '15px' }}
-        variant="h5"
-      >
-        Attributes
-      </Typography>
+      <Typography variant="h5">Attributes</Typography>
       <Grid container direction="column" spacing={1}>
         {Object.entries(attributes).map(([key, value]) => {
           if (key === '') {

package/src/FeatureDetailsWidget/NumberTextField.tsx

@@ -1,3 +1,4 @@
+/* eslint-disable @typescript-eslint/unbound-method */
 /* eslint-disable @typescript-eslint/no-unsafe-argument */
 import { TextField, TextFieldProps } from '@mui/material'
 import { observer } from 'mobx-react'

package/src/FeatureDetailsWidget/StringTextField.tsx

@@ -1,3 +1,4 @@
+/* eslint-disable @typescript-eslint/unbound-method */
 /* eslint-disable @typescript-eslint/no-unsafe-argument */
 import { TextField, TextFieldProps } from '@mui/material'
 import { observer } from 'mobx-react'