@apollo-annotation/jbrowse-plugin-apollo 0.1.10 → 0.1.11

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@apollo-annotation/jbrowse-plugin-apollo",
-  "version": "0.1.10",
+  "version": "0.1.11",
   "description": "Apollo plugin for JBrowse 2",
   "repository": {
     "type": "git",
@@ -37,7 +37,7 @@
     "browse": "serve --no-request-logging --listen 8999 --no-port-switching .jbrowse",
     "test": "jest",
     "test:ci": "jest --coverage",
-    "start:collab-cypress": "yarn workspace apollo-collaboration-server run cypress:start",
+    "start:collab-cypress": "yarn workspace @apollo-annotation/collaboration-server run cypress:start",
     "test:e2e": "yarn build && start-test \"npm-run-all --parallel start:server browse start:collab-cypress\" \"9000|8999|http://localhost:3999/health\" \"npm-run-all cypress:run\"",
     "test:e2e:debug": "yarn build && start-test \"npm-run-all --parallel start:server browse start:collab-cypress\" \"9000|8999|http://localhost:3999/health\" \"npm-run-all cypress:debug\"",
     "cypress:run": "cypress run --browser chrome",
@@ -51,9 +51,9 @@
     "name": "Apollo"
   },
   "dependencies": {
-    "@apollo-annotation/apollo-common": "^0.1.10",
-    "@apollo-annotation/apollo-mst": "^0.1.10",
-    "@apollo-annotation/apollo-shared": "^0.1.10",
+    "@apollo-annotation/common": "^0.1.11",
+    "@apollo-annotation/mst": "^0.1.11",
+    "@apollo-annotation/shared": "^0.1.11",
     "@emotion/react": "^11.10.6",
     "@emotion/styled": "^11.10.6",
     "@gmod/gff": "1.2.0",

package/src/ApolloInternetAccount/model.ts

@@ -6,7 +6,7 @@
 /* eslint-disable @typescript-eslint/no-unsafe-argument */
 /* eslint-disable @typescript-eslint/unbound-method */
 /* eslint-disable @typescript-eslint/no-misused-promises */
-import { Change } from '@apollo-annotation/apollo-common'
+import { Change } from '@apollo-annotation/common'
 import {
   ChangeMessage,
   CheckResultUpdate,
@@ -15,7 +15,7 @@ import {
   UserLocationMessage,
   getDecodedToken,
   makeUserSessionId,
-} from '@apollo-annotation/apollo-shared'
+} from '@apollo-annotation/shared'
 import { ConfigurationReference, getConf } from '@jbrowse/core/configuration'
 import { InternetAccount } from '@jbrowse/core/pluggableElementTypes'
 import {

package/src/ApolloSixFrameRenderer/components/ApolloRendering.tsx

@@ -5,11 +5,11 @@
 /* eslint-disable @typescript-eslint/no-unsafe-argument */
 /* eslint-disable @typescript-eslint/no-unnecessary-condition */
 /* eslint-disable @typescript-eslint/no-misused-promises */
-import { AnnotationFeatureI } from '@apollo-annotation/apollo-mst'
+import { AnnotationFeatureI } from '@apollo-annotation/mst'
 import {
   LocationEndChange,
   LocationStartChange,
-} from '@apollo-annotation/apollo-shared'
+} from '@apollo-annotation/shared'
 import { getConf } from '@jbrowse/core/configuration'
 import { AbstractSessionModel, Region, getSession } from '@jbrowse/core/util'
 import { Menu, MenuItem } from '@mui/material'

package/src/BackendDrivers/BackendDriver.ts

@@ -1,9 +1,9 @@
-import { Change, ClientDataStore } from '@apollo-annotation/apollo-common'
+import { Change, ClientDataStore } from '@apollo-annotation/common'
 import {
   AnnotationFeatureSnapshot,
   CheckResultSnapshot,
-} from '@apollo-annotation/apollo-mst'
-import { ValidationResultSet } from '@apollo-annotation/apollo-shared'
+} from '@apollo-annotation/mst'
+import { ValidationResultSet } from '@apollo-annotation/shared'
 import { Assembly } from '@jbrowse/core/assemblyManager/assembly'
 import { Region } from '@jbrowse/core/util'
 

package/src/BackendDrivers/CollaborationServerDriver.ts

@@ -4,19 +4,13 @@
 /* eslint-disable @typescript-eslint/no-unsafe-member-access */
 /* eslint-disable @typescript-eslint/no-unsafe-call */
 /* eslint-disable @typescript-eslint/no-unnecessary-condition */
-import {
-  AssemblySpecificChange,
-  Change,
-} from '@apollo-annotation/apollo-common'
+import { AssemblySpecificChange, Change } from '@apollo-annotation/common'
 import {
   AnnotationFeatureSnapshot,
   ApolloRefSeqI,
   CheckResultSnapshot,
-} from '@apollo-annotation/apollo-mst'
-import {
-  ChangeMessage,
-  ValidationResultSet,
-} from '@apollo-annotation/apollo-shared'
+} from '@apollo-annotation/mst'
+import { ChangeMessage, ValidationResultSet } from '@apollo-annotation/shared'
 import { getConf } from '@jbrowse/core/configuration'
 import { BaseInternetAccountModel } from '@jbrowse/core/pluggableElementTypes'
 import { Region, getSession } from '@jbrowse/core/util'

package/src/BackendDrivers/DesktopFileDriver.ts

@@ -3,16 +3,16 @@ import {
   AssemblySpecificChange,
   Change,
   isAssemblySpecificChange,
-} from '@apollo-annotation/apollo-common'
+} from '@apollo-annotation/common'
 import {
   AnnotationFeatureSnapshot,
   CheckResultSnapshot,
-} from '@apollo-annotation/apollo-mst'
+} from '@apollo-annotation/mst'
 import {
   ValidationResultSet,
   makeGFF3Feature,
   splitStringIntoChunks,
-} from '@apollo-annotation/apollo-shared'
+} from '@apollo-annotation/shared'
 import gff, { GFF3Item } from '@gmod/gff'
 import { getConf } from '@jbrowse/core/configuration'
 import { Region, getSession } from '@jbrowse/core/util'

package/src/BackendDrivers/InMemoryFileDriver.ts

@@ -1,13 +1,10 @@
 /* eslint-disable @typescript-eslint/require-await */
-import {
-  AssemblySpecificChange,
-  Change,
-} from '@apollo-annotation/apollo-common'
+import { AssemblySpecificChange, Change } from '@apollo-annotation/common'
 import {
   AnnotationFeatureSnapshot,
   CheckResultSnapshot,
-} from '@apollo-annotation/apollo-mst'
-import { ValidationResultSet } from '@apollo-annotation/apollo-shared'
+} from '@apollo-annotation/mst'
+import { ValidationResultSet } from '@apollo-annotation/shared'
 import { getConf } from '@jbrowse/core/configuration'
 import { Region, getSession } from '@jbrowse/core/util'
 

package/src/ChangeManager.ts

@@ -5,11 +5,11 @@ import {
   Change,
   ClientDataStore,
   isAssemblySpecificChange,
-} from '@apollo-annotation/apollo-common'
+} from '@apollo-annotation/common'
 import {
   ValidationResultSet,
   validationRegistry,
-} from '@apollo-annotation/apollo-shared'
+} from '@apollo-annotation/shared'
 import { getSession } from '@jbrowse/core/util'
 import { IAnyStateTreeNode } from 'mobx-state-tree'
 

package/src/FeatureDetailsWidget/Attributes.tsx

@@ -1,8 +1,8 @@
 /* eslint-disable @typescript-eslint/unbound-method */
 /* eslint-disable @typescript-eslint/no-unnecessary-condition */
 /* eslint-disable @typescript-eslint/no-misused-promises */
-import { AnnotationFeatureI } from '@apollo-annotation/apollo-mst'
-import { FeatureAttributeChange } from '@apollo-annotation/apollo-shared'
+import { AnnotationFeatureI } from '@apollo-annotation/mst'
+import { FeatureAttributeChange } from '@apollo-annotation/shared'
 import { AbstractSessionModel } from '@jbrowse/core/util'
 import DeleteIcon from '@mui/icons-material/Delete'
 import {

package/src/FeatureDetailsWidget/BasicInformation.tsx

@@ -1,11 +1,11 @@
 /* eslint-disable @typescript-eslint/no-misused-promises */
-import { AnnotationFeatureI } from '@apollo-annotation/apollo-mst'
+import { AnnotationFeatureI } from '@apollo-annotation/mst'
 import {
   LocationEndChange,
   LocationStartChange,
   StrandChange,
   TypeChange,
-} from '@apollo-annotation/apollo-shared'
+} from '@apollo-annotation/shared'
 import { AbstractSessionModel } from '@jbrowse/core/util'
 import {
   FormControl,

package/src/FeatureDetailsWidget/RelatedFeature.tsx

@@ -1,10 +1,7 @@
 /* eslint-disable @typescript-eslint/no-unsafe-assignment */
 /* eslint-disable @typescript-eslint/no-unsafe-member-access */
 /* eslint-disable @typescript-eslint/no-unsafe-argument */
-import {
-  AnnotationFeature,
-  AnnotationFeatureI,
-} from '@apollo-annotation/apollo-mst'
+import { AnnotationFeature, AnnotationFeatureI } from '@apollo-annotation/mst'
 import { SessionWithWidgets } from '@jbrowse/core/util'
 import { Button, Paper, Typography } from '@mui/material'
 import { observer } from 'mobx-react'

package/src/FeatureDetailsWidget/Sequence.tsx

@@ -1,6 +1,6 @@
 /* eslint-disable @typescript-eslint/no-unnecessary-condition */
-import { AnnotationFeatureI } from '@apollo-annotation/apollo-mst'
-import { splitStringIntoChunks } from '@apollo-annotation/apollo-shared'
+import { AnnotationFeatureI } from '@apollo-annotation/mst'
+import { splitStringIntoChunks } from '@apollo-annotation/shared'
 import { Button, Typography } from '@mui/material'
 import { observer } from 'mobx-react'
 import React, { useState } from 'react'

package/src/FeatureDetailsWidget/model.ts

@@ -1,9 +1,6 @@
 /* eslint-disable @typescript-eslint/no-unsafe-call */
 /* eslint-disable @typescript-eslint/no-unnecessary-condition */
-import {
-  AnnotationFeature,
-  AnnotationFeatureI,
-} from '@apollo-annotation/apollo-mst'
+import { AnnotationFeature, AnnotationFeatureI } from '@apollo-annotation/mst'
 import { getSession } from '@jbrowse/core/util'
 import { ElementId } from '@jbrowse/core/util/types/mst'
 import { autorun } from 'mobx'

package/src/LinearApolloDisplay/glyphs/BoxGlyph.ts

@@ -1,10 +1,10 @@
 /* eslint-disable @typescript-eslint/no-unnecessary-condition */
 /* eslint-disable @typescript-eslint/unbound-method */
-import { AnnotationFeatureI } from '@apollo-annotation/apollo-mst'
+import { AnnotationFeatureI } from '@apollo-annotation/mst'
 import {
   LocationEndChange,
   LocationStartChange,
-} from '@apollo-annotation/apollo-shared'
+} from '@apollo-annotation/shared'
 import { Theme, alpha } from '@mui/material'
 
 import { LinearApolloDisplay } from '../stateModel'

package/src/LinearApolloDisplay/glyphs/CanonicalGeneGlyph.ts

@@ -3,13 +3,13 @@
 /* eslint-disable @typescript-eslint/no-unsafe-argument */
 /* eslint-disable @typescript-eslint/unbound-method */
 /* eslint-disable @typescript-eslint/no-unnecessary-condition */
-import { AnnotationFeatureI } from '@apollo-annotation/apollo-mst'
+import { AnnotationFeatureI } from '@apollo-annotation/mst'
 import {
   DiscontinuousLocationEndChange,
   DiscontinuousLocationStartChange,
   LocationEndChange,
   LocationStartChange,
-} from '@apollo-annotation/apollo-shared'
+} from '@apollo-annotation/shared'
 import { alpha } from '@mui/material'
 
 import { LinearApolloDisplay } from '../stateModel'

package/src/LinearApolloDisplay/glyphs/GenericChildGlyph.ts

@@ -1,7 +1,7 @@
 /* eslint-disable @typescript-eslint/no-unnecessary-condition */
 /* eslint-disable @typescript-eslint/no-unsafe-argument */
 /* eslint-disable @typescript-eslint/unbound-method */
-import { AnnotationFeatureI } from '@apollo-annotation/apollo-mst'
+import { AnnotationFeatureI } from '@apollo-annotation/mst'
 
 import { LinearApolloDisplay } from '../stateModel'
 import { MousePosition } from '../stateModel/mouseEvents'

package/src/LinearApolloDisplay/glyphs/Glyph.ts

@@ -2,7 +2,7 @@
 /* eslint-disable @typescript-eslint/no-unsafe-member-access */
 /* eslint-disable @typescript-eslint/no-unsafe-assignment */
 /* eslint-disable @typescript-eslint/no-unsafe-return */
-import { AnnotationFeatureI } from '@apollo-annotation/apollo-mst'
+import { AnnotationFeatureI } from '@apollo-annotation/mst'
 import { MenuItem } from '@jbrowse/core/ui'
 import { AbstractSessionModel, SessionWithWidgets } from '@jbrowse/core/util'
 import { alpha } from '@mui/material'

package/src/LinearApolloDisplay/glyphs/ImplicitExonGeneGlyph.ts

@@ -4,11 +4,11 @@
 /* eslint-disable @typescript-eslint/no-unsafe-call */
 /* eslint-disable @typescript-eslint/unbound-method */
 /* eslint-disable @typescript-eslint/no-unnecessary-condition */
-import { AnnotationFeatureI } from '@apollo-annotation/apollo-mst'
+import { AnnotationFeatureI } from '@apollo-annotation/mst'
 import {
   LocationEndChange,
   LocationStartChange,
-} from '@apollo-annotation/apollo-shared'
+} from '@apollo-annotation/shared'
 import { alpha } from '@mui/material'
 
 import { LinearApolloDisplay } from '../stateModel'

package/src/LinearApolloDisplay/stateModel/base.ts

@@ -3,7 +3,7 @@
 /* eslint-disable @typescript-eslint/no-unsafe-assignment */
 /* eslint-disable @typescript-eslint/no-unsafe-member-access */
 /* eslint-disable @typescript-eslint/no-unnecessary-condition */
-import { AnnotationFeatureI } from '@apollo-annotation/apollo-mst'
+import { AnnotationFeatureI } from '@apollo-annotation/mst'
 import { ConfigurationReference, getConf } from '@jbrowse/core/configuration'
 import { AnyConfigurationSchemaType } from '@jbrowse/core/configuration/configurationSchema'
 import { BaseDisplay } from '@jbrowse/core/pluggableElementTypes'

package/src/LinearApolloDisplay/stateModel/getGlyph.ts

@@ -1,5 +1,5 @@
 /* eslint-disable @typescript-eslint/no-unsafe-member-access */
-import { AnnotationFeatureI } from '@apollo-annotation/apollo-mst'
+import { AnnotationFeatureI } from '@apollo-annotation/mst'
 
 import {
   BoxGlyph,

package/src/LinearApolloDisplay/stateModel/glyphs.ts

@@ -1,6 +1,6 @@
 /* eslint-disable @typescript-eslint/no-unsafe-argument */
 /* eslint-disable @typescript-eslint/no-unsafe-return */
-import { AnnotationFeatureI } from '@apollo-annotation/apollo-mst'
+import { AnnotationFeatureI } from '@apollo-annotation/mst'
 import { ObservableMap, observable } from 'mobx'
 import { types } from 'mobx-state-tree'
 

package/src/LinearApolloDisplay/stateModel/layouts.ts

@@ -1,7 +1,7 @@
 /* eslint-disable @typescript-eslint/no-unnecessary-condition */
 /* eslint-disable @typescript-eslint/no-unsafe-argument */
 /* eslint-disable @typescript-eslint/no-unsafe-member-access */
-import { AnnotationFeatureI } from '@apollo-annotation/apollo-mst'
+import { AnnotationFeatureI } from '@apollo-annotation/mst'
 import { AnyConfigurationSchemaType } from '@jbrowse/core/configuration/configurationSchema'
 import PluginManager from '@jbrowse/core/PluginManager'
 import { AbstractSessionModel, doesIntersect2 } from '@jbrowse/core/util'

package/src/LinearApolloDisplay/stateModel/mouseEvents.ts

@@ -1,6 +1,6 @@
 /* eslint-disable @typescript-eslint/no-unnecessary-condition */
 /* eslint-disable @typescript-eslint/no-unsafe-member-access */
-import { AnnotationFeatureI } from '@apollo-annotation/apollo-mst'
+import { AnnotationFeatureI } from '@apollo-annotation/mst'
 import { AnyConfigurationSchemaType } from '@jbrowse/core/configuration/configurationSchema'
 import PluginManager from '@jbrowse/core/PluginManager'
 import { MenuItem } from '@jbrowse/core/ui'

package/src/OntologyManager/util.ts

@@ -1,4 +1,4 @@
-import { AnnotationFeatureI } from '@apollo-annotation/apollo-mst'
+import { AnnotationFeatureI } from '@apollo-annotation/mst'
 
 import OntologyStore from './OntologyStore'
 import { isOntologyClass } from '.'

package/src/SixFrameFeatureDisplay/stateModel.ts

@@ -4,7 +4,7 @@
 /* eslint-disable @typescript-eslint/no-unsafe-member-access */
 /* eslint-disable @typescript-eslint/no-unsafe-argument */
 /* eslint-disable @typescript-eslint/unbound-method */
-import { AnnotationFeatureI } from '@apollo-annotation/apollo-mst'
+import { AnnotationFeatureI } from '@apollo-annotation/mst'
 import { ConfigurationReference } from '@jbrowse/core/configuration'
 import { AnyConfigurationSchemaType } from '@jbrowse/core/configuration/configurationSchema'
 import PluginManager from '@jbrowse/core/PluginManager'

package/src/TabularEditor/HybridGrid/ChangeHandling.ts

@@ -1,11 +1,11 @@
-import type { AnnotationFeatureI } from '@apollo-annotation/apollo-mst'
+import type { AnnotationFeatureI } from '@apollo-annotation/mst'
 import {
   DiscontinuousLocationEndChange,
   DiscontinuousLocationStartChange,
   LocationEndChange,
   LocationStartChange,
   TypeChange,
-} from '@apollo-annotation/apollo-shared'
+} from '@apollo-annotation/shared'
 
 import type { ChangeManager } from '../../ChangeManager'
 

package/src/TabularEditor/HybridGrid/Feature.tsx

@@ -2,7 +2,7 @@
 /* eslint-disable @typescript-eslint/no-unsafe-assignment */
 /* eslint-disable @typescript-eslint/no-unsafe-member-access */
 /* eslint-disable @typescript-eslint/no-unsafe-argument */
-import { AnnotationFeatureI } from '@apollo-annotation/apollo-mst'
+import { AnnotationFeatureI } from '@apollo-annotation/mst'
 import { AbstractSessionModel } from '@jbrowse/core/util'
 import { observer } from 'mobx-react'
 import React from 'react'

package/src/TabularEditor/HybridGrid/FeatureAttributes.tsx

@@ -1,5 +1,5 @@
 /* eslint-disable @typescript-eslint/restrict-template-expressions */
-import { AnnotationFeatureI } from '@apollo-annotation/apollo-mst'
+import { AnnotationFeatureI } from '@apollo-annotation/mst'
 import { observer } from 'mobx-react'
 import { getSnapshot } from 'mobx-state-tree'
 import React from 'react'

package/src/TabularEditor/HybridGrid/featureContextMenuItems.ts

@@ -1,4 +1,4 @@
-import { AnnotationFeatureI } from '@apollo-annotation/apollo-mst'
+import { AnnotationFeatureI } from '@apollo-annotation/mst'
 import { MenuItem } from '@jbrowse/core/ui'
 import { AbstractSessionModel } from '@jbrowse/core/util'
 

package/src/components/AddAssembly.tsx

@@ -8,7 +8,7 @@ import {
   AddAssemblyAndFeaturesFromFileChange,
   AddAssemblyFromExternalChange,
   AddAssemblyFromFileChange,
-} from '@apollo-annotation/apollo-shared'
+} from '@apollo-annotation/shared'
 import { readConfObject } from '@jbrowse/core/configuration'
 import { AbstractSessionModel } from '@jbrowse/core/util'
 import LinkIcon from '@mui/icons-material/Link'

package/src/components/AddChildFeature.tsx

@@ -1,6 +1,6 @@
 /* eslint-disable @typescript-eslint/no-misused-promises */
-import { AnnotationFeatureI } from '@apollo-annotation/apollo-mst'
-import { AddFeatureChange } from '@apollo-annotation/apollo-shared'
+import { AnnotationFeatureI } from '@apollo-annotation/mst'
+import { AddFeatureChange } from '@apollo-annotation/shared'
 import { AbstractSessionModel } from '@jbrowse/core/util'
 import {
   Button,

package/src/components/AddFeature.tsx

@@ -1,6 +1,6 @@
 /* eslint-disable @typescript-eslint/no-unnecessary-condition */
 /* eslint-disable @typescript-eslint/no-misused-promises */
-import { AddFeatureChange } from '@apollo-annotation/apollo-shared'
+import { AddFeatureChange } from '@apollo-annotation/shared'
 import { AbstractSessionModel, Region } from '@jbrowse/core/util/types'
 import {
   Button,

package/src/components/CopyFeature.tsx

@@ -4,8 +4,8 @@
 import {
   AnnotationFeatureI,
   AnnotationFeatureSnapshot,
-} from '@apollo-annotation/apollo-mst'
-import { AddFeatureChange } from '@apollo-annotation/apollo-shared'
+} from '@apollo-annotation/mst'
+import { AddFeatureChange } from '@apollo-annotation/shared'
 import { readConfObject } from '@jbrowse/core/configuration'
 import { AbstractSessionModel } from '@jbrowse/core/util'
 import {

package/src/components/DeleteAssembly.tsx

@@ -1,5 +1,5 @@
 /* eslint-disable @typescript-eslint/no-misused-promises */
-import { DeleteAssemblyChange } from '@apollo-annotation/apollo-shared'
+import { DeleteAssemblyChange } from '@apollo-annotation/shared'
 import { Assembly } from '@jbrowse/core/assemblyManager/assembly'
 import {
   Button,

package/src/components/DeleteFeature.tsx

@@ -1,8 +1,8 @@
 /* eslint-disable @typescript-eslint/no-unsafe-assignment */
 /* eslint-disable @typescript-eslint/no-unsafe-member-access */
 /* eslint-disable @typescript-eslint/no-misused-promises */
-import { AnnotationFeatureI } from '@apollo-annotation/apollo-mst'
-import { DeleteFeatureChange } from '@apollo-annotation/apollo-shared'
+import { AnnotationFeatureI } from '@apollo-annotation/mst'
+import { DeleteFeatureChange } from '@apollo-annotation/shared'
 import { AbstractSessionModel } from '@jbrowse/core/util'
 import {
   Button,

package/src/components/DownloadGFF3.tsx

@@ -3,8 +3,8 @@
 /* eslint-disable @typescript-eslint/no-unsafe-member-access */
 /* eslint-disable @typescript-eslint/no-unnecessary-condition */
 /* eslint-disable @typescript-eslint/no-misused-promises */
-import { ApolloAssembly } from '@apollo-annotation/apollo-mst'
-import { makeGFF3Feature } from '@apollo-annotation/apollo-shared'
+import { ApolloAssembly } from '@apollo-annotation/mst'
+import { makeGFF3Feature } from '@apollo-annotation/shared'
 import gff, { GFF3Item } from '@gmod/gff'
 import { Assembly } from '@jbrowse/core/assemblyManager/assembly'
 import { getConf } from '@jbrowse/core/configuration'

package/src/components/ImportFeatures.tsx

@@ -4,7 +4,7 @@
 /* eslint-disable @typescript-eslint/no-unsafe-member-access */
 /* eslint-disable @typescript-eslint/no-unsafe-assignment */
 /* eslint-disable @typescript-eslint/no-misused-promises */
-import { AddFeaturesFromFileChange } from '@apollo-annotation/apollo-shared'
+import { AddFeaturesFromFileChange } from '@apollo-annotation/shared'
 import { Assembly } from '@jbrowse/core/assemblyManager/assembly'
 import { getConf } from '@jbrowse/core/configuration'
 import {

package/src/components/ManageUsers.tsx

@@ -3,7 +3,7 @@
 /* eslint-disable @typescript-eslint/no-unsafe-assignment */
 /* eslint-disable @typescript-eslint/no-unsafe-member-access */
 /* eslint-disable @typescript-eslint/no-unsafe-return */
-import { DeleteUserChange, UserChange } from '@apollo-annotation/apollo-shared'
+import { DeleteUserChange, UserChange } from '@apollo-annotation/shared'
 import { AbstractRootModel } from '@jbrowse/core/util'
 import DeleteIcon from '@mui/icons-material/Delete'
 import {

package/src/components/ModifyFeatureAttribute.tsx

@@ -1,8 +1,8 @@
 /* eslint-disable @typescript-eslint/unbound-method */
 /* eslint-disable @typescript-eslint/no-unnecessary-condition */
 /* eslint-disable @typescript-eslint/no-misused-promises */
-import { AnnotationFeatureI } from '@apollo-annotation/apollo-mst'
-import { FeatureAttributeChange } from '@apollo-annotation/apollo-shared'
+import { AnnotationFeatureI } from '@apollo-annotation/mst'
+import { FeatureAttributeChange } from '@apollo-annotation/shared'
 import { AbstractSessionModel } from '@jbrowse/core/util'
 import DeleteIcon from '@mui/icons-material/Delete'
 import {

package/src/components/ViewChangeLog.tsx

@@ -3,7 +3,7 @@
 /* eslint-disable @typescript-eslint/no-unsafe-argument */
 /* eslint-disable @typescript-eslint/no-unsafe-member-access */
 /* eslint-disable @typescript-eslint/no-unsafe-return */
-import { changeRegistry } from '@apollo-annotation/apollo-common'
+import { changeRegistry } from '@apollo-annotation/common'
 import {
   Button,
   DialogActions,

package/src/extensions/annotationFromPileup.ts

@@ -3,8 +3,8 @@
 /* eslint-disable @typescript-eslint/no-unsafe-member-access */
 /* eslint-disable @typescript-eslint/no-unsafe-call */
 /* eslint-disable @typescript-eslint/no-unsafe-return */
-import { AnnotationFeatureSnapshot } from '@apollo-annotation/apollo-mst'
-import { AddFeatureChange } from '@apollo-annotation/apollo-shared'
+import { AnnotationFeatureSnapshot } from '@apollo-annotation/mst'
+import { AddFeatureChange } from '@apollo-annotation/shared'
 import { Assembly } from '@jbrowse/core/assemblyManager/assembly'
 import { DisplayType } from '@jbrowse/core/pluggableElementTypes'
 import PluggableElementBase from '@jbrowse/core/pluggableElementTypes/PluggableElementBase'

package/src/index.ts

@@ -2,14 +2,14 @@
 /* eslint-disable @typescript-eslint/unbound-method */
 /* eslint-disable @typescript-eslint/no-unnecessary-condition */
 /* eslint-disable @typescript-eslint/no-misused-promises */
-import { changeRegistry, checkRegistry } from '@apollo-annotation/apollo-common'
+import { changeRegistry, checkRegistry } from '@apollo-annotation/common'
 import {
   CDSCheck,
   CoreValidation,
   ParentChildValidation,
   changes,
   validationRegistry,
-} from '@apollo-annotation/apollo-shared'
+} from '@apollo-annotation/shared'
 import { ConfigurationSchema } from '@jbrowse/core/configuration'
 import {
   DisplayType,

package/src/session/ClientDataStore.ts

@@ -3,7 +3,7 @@
 /* eslint-disable @typescript-eslint/no-unsafe-call */
 /* eslint-disable @typescript-eslint/no-unnecessary-condition */
 /* eslint-disable @typescript-eslint/no-unsafe-argument */
-import { ClientDataStore as ClientDataStoreType } from '@apollo-annotation/apollo-common'
+import { ClientDataStore as ClientDataStoreType } from '@apollo-annotation/common'
 import {
   AnnotationFeature,
   AnnotationFeatureSnapshot,
@@ -11,7 +11,7 @@ import {
   ApolloRefSeq,
   CheckResult,
   CheckResultSnapshot,
-} from '@apollo-annotation/apollo-mst'
+} from '@apollo-annotation/mst'
 import { getConf, readConfObject } from '@jbrowse/core/configuration'
 import { ConfigurationModel } from '@jbrowse/core/configuration/types'
 import { Region, getSession, isElectron } from '@jbrowse/core/util'

package/src/session/session.ts

@@ -2,12 +2,9 @@
 /* eslint-disable @typescript-eslint/no-unnecessary-condition */
 /* eslint-disable @typescript-eslint/no-unsafe-assignment */
 /* eslint-disable @typescript-eslint/no-unsafe-argument */
-import { ClientDataStore as ClientDataStoreType } from '@apollo-annotation/apollo-common'
-import {
-  AnnotationFeature,
-  AnnotationFeatureI,
-} from '@apollo-annotation/apollo-mst'
-import { UserLocation } from '@apollo-annotation/apollo-shared'
+import { ClientDataStore as ClientDataStoreType } from '@apollo-annotation/common'
+import { AnnotationFeature, AnnotationFeatureI } from '@apollo-annotation/mst'
+import { UserLocation } from '@apollo-annotation/shared'
 import { AssemblyModel } from '@jbrowse/core/assemblyManager/assembly'
 import { getConf } from '@jbrowse/core/configuration'
 import { BaseInternetAccountModel } from '@jbrowse/core/pluggableElementTypes'

package/src/util/loadAssemblyIntoClient.ts

@@ -1,12 +1,9 @@
-import {
-  ClientDataStore,
-  checkRegistry,
-} from '@apollo-annotation/apollo-common'
+import { ClientDataStore, checkRegistry } from '@apollo-annotation/common'
 import {
   AnnotationFeatureSnapshot,
   ApolloAssemblyI,
   CheckResultSnapshot,
-} from '@apollo-annotation/apollo-mst'
+} from '@apollo-annotation/mst'
 import gff, { GFF3Comment, GFF3Feature, GFF3Sequence } from '@gmod/gff'
 import { getSnapshot } from 'mobx-state-tree'
 import { nanoid } from 'nanoid'