@apollo-annotation/common 0.3.6 → 0.3.7

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@apollo-annotation/common",
-  "version": "0.3.6",
+  "version": "0.3.7",
   "repository": {
     "type": "git",
     "url": "https://github.com/GMOD/Apollo3.git",
@@ -11,13 +11,13 @@
     "build": "tsc"
   },
   "dependencies": {
-    "@apollo-annotation/schemas": "^0.3.6",
+    "@apollo-annotation/schemas": "^0.3.7",
     "@jbrowse/core": "^3.0.1",
     "bson-objectid": "^2.0.4",
     "tslib": "^2.3.1"
   },
   "devDependencies": {
-    "@apollo-annotation/mst": "^0.3.6",
+    "@apollo-annotation/mst": "^0.3.7",
     "@nestjs/common": "^10.1.0",
     "@nestjs/core": "^10.1.0",
     "@types/node": "^18.14.2",

package/src/FeatureChange.ts

@@ -116,4 +116,69 @@ export abstract class FeatureChange extends AssemblySpecificChange {
       _id: newId,
     }
   }
+
+  addChild(parentFeature: Feature, child: AnnotationFeatureSnapshot) {
+    if (!parentFeature.attributes?._id) {
+      let { attributes } = parentFeature
+      if (!attributes) {
+        attributes = {}
+      }
+      // eslint-disable-next-line @typescript-eslint/no-unsafe-assignment
+      attributes = {
+        _id: [parentFeature._id.toString()],
+        // eslint-disable-next-line unicorn/prefer-structured-clone
+        ...JSON.parse(JSON.stringify(attributes)),
+      }
+      parentFeature.attributes = attributes
+    }
+    const { _id } = child
+    if (!parentFeature.children) {
+      parentFeature.children = new Map()
+    }
+    parentFeature.children.set(_id, {
+      allIds: [],
+      ...child,
+      // eslint-disable-next-line @typescript-eslint/ban-ts-comment
+      // @ts-expect-error
+      _id,
+    })
+    // Child features should be sorted for click and drag of gene glyphs to work properly
+    parentFeature.children = new Map(
+      [...parentFeature.children.entries()].sort((a, b) => a[1].min - b[1].min),
+    )
+  }
+
+  /**
+   * Delete feature's subfeatures that match an ID and return the IDs of any
+   * sub-subfeatures that were deleted
+   * @param feature -
+   * @param featureIdToDelete -
+   * @returns - list of deleted feature IDs
+   */
+  findAndDeleteChildFeature(
+    feature: Feature,
+    featureIdToDelete: string,
+  ): string[] {
+    if (!feature.children) {
+      throw new Error(`Feature ${feature._id.toHexString()} has no children`)
+    }
+    const { _id, children } = feature
+    const child = children.get(featureIdToDelete)
+    if (child) {
+      const deletedIds = this.getChildFeatureIds(child)
+      children.delete(featureIdToDelete)
+      return deletedIds
+    }
+    for (const [, childFeature] of children) {
+      try {
+        return this.findAndDeleteChildFeature(childFeature, featureIdToDelete)
+      } catch {
+        // pass
+      }
+    }
+
+    throw new Error(
+      `Feature "${featureIdToDelete}" not found in ${_id.toHexString()}`,
+    )
+  }
 }